Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 169 of 335
Found at i:50071988 original size:17 final size:17
Alignment explanation
Indices: 50071968--50072006 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
50071958 AAAAAAAGTT
*
50071968 AAAATTTTAAAAAATAA
1 AAAATTTGAAAAAATAA
* *
50071985 AAAAATTGAAAATATAA
1 AAAATTTGAAAAAATAA
50072002 AAAAT
1 AAAAT
50072007 CAAAAAATAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (17 bp):
AAAATTTGAAAAAATAA
Found at i:50072322 original size:27 final size:27
Alignment explanation
Indices: 50072283--50072334 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 27
50072273 TTTTTCTTGA
50072283 AATTATATATATTGTCTTGA-ATTTTTAT
1 AATTATATATATT-TCTT-ATATTTTTAT
50072311 AATT-TATATATTTCTTATATTTTT
1 AATTATATATATTTCTTATATTTTT
50072335 CTAAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 1 0.04
26 10 0.43
27 8 0.35
28 4 0.17
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.62
Consensus pattern (27 bp):
AATTATATATATTTCTTATATTTTTAT
Found at i:50072944 original size:30 final size:30
Alignment explanation
Indices: 50072903--50072961 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
50072893 CTCCTTCAAC
*
50072903 CTCTCACCATTGCTGTCACCACTATAGCTG
1 CTCTCAACATTGCTGTCACCACTATAGCTG
* * *
50072933 CTCTCAACATTGTTGTGACCAGTATAGCT
1 CTCTCAACATTGCTGTCACCACTATAGCT
50072962 ATTTAGTAGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.32
Consensus pattern (30 bp):
CTCTCAACATTGCTGTCACCACTATAGCTG
Found at i:50073646 original size:21 final size:21
Alignment explanation
Indices: 50073620--50073666 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
50073610 TTTGAGACGA
50073620 TGAATTTGATTTTATGATTCT
1 TGAATTTGATTTTATGATTCT
50073641 TGAATTTGATTTTATGATTCT
1 TGAATTTGATTTTATGATTCT
50073662 TGAAT
1 TGAAT
50073667 CTAAGTATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.26, C:0.04, G:0.15, T:0.55
Consensus pattern (21 bp):
TGAATTTGATTTTATGATTCT
Found at i:50073767 original size:23 final size:23
Alignment explanation
Indices: 50073722--50073767 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
50073712 AATTGTGATT
* *
50073722 TATAATTATACATATATTTTTGA
1 TATAATTATACATATAATATTGA
* *
50073745 TATAATTGTATATATAATATTGA
1 TATAATTATACATATAATATTGA
50073768 GGCTTTAATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (23 bp):
TATAATTATACATATAATATTGA
Found at i:50091916 original size:16 final size:17
Alignment explanation
Indices: 50091895--50091927 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50091885 AGTTGCCATA
50091895 CTTGAAT-GATTTTGGT
1 CTTGAATAGATTTTGGT
50091911 CTTGAATAGATTTTGGT
1 CTTGAATAGATTTTGGT
50091928 ATATGTGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.48
Consensus pattern (17 bp):
CTTGAATAGATTTTGGT
Found at i:50094891 original size:31 final size:31
Alignment explanation
Indices: 50094854--50094914 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
50094844 TCAAAAATAA
50094854 AACTAACGGTTGTTTCTAATATAACACCATT
1 AACTAACGGTTGTTTCTAATATAACACCATT
50094885 AACTAACGGTTGTTTCTAATATAACACCAT
1 AACTAACGGTTGTTTCTAATATAACACCAT
50094915 CGAAATGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (31 bp):
AACTAACGGTTGTTTCTAATATAACACCATT
Found at i:50096437 original size:64 final size:64
Alignment explanation
Indices: 50096355--50096482 Score: 256
Period size: 64 Copynumber: 2.0 Consensus size: 64
50096345 ATAAAAATAA
50096355 TTATGGGATTAAATTTATATGTCTAGAATCCTGAATGGGTCTATTTTTAATAGAAACAAACAAG
1 TTATGGGATTAAATTTATATGTCTAGAATCCTGAATGGGTCTATTTTTAATAGAAACAAACAAG
50096419 TTATGGGATTAAATTTATATGTCTAGAATCCTGAATGGGTCTATTTTTAATAGAAACAAACAAG
1 TTATGGGATTAAATTTATATGTCTAGAATCCTGAATGGGTCTATTTTTAATAGAAACAAACAAG
50096483 AACATCATTT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (64 bp):
TTATGGGATTAAATTTATATGTCTAGAATCCTGAATGGGTCTATTTTTAATAGAAACAAACAAG
Found at i:50097958 original size:23 final size:22
Alignment explanation
Indices: 50097932--50097975 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
50097922 GTGATGAGGT
50097932 TATCTT-ATAAATATGTATGAATC
1 TATCTTGA-AAATATGT-TGAATC
50097955 TATCTTGAAAATATGTTGAAT
1 TATCTTGAAAATATGTTGAAT
50097976 TGGATTGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 14 0.70
24 1 0.05
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (22 bp):
TATCTTGAAAATATGTTGAATC
Found at i:50098239 original size:12 final size:12
Alignment explanation
Indices: 50098222--50098255 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
50098212 CCCCCAGCCC
50098222 ATATTAATTTTT
1 ATATTAATTTTT
*
50098234 ATATTATTTTTT
1 ATATTAATTTTT
50098246 ATA-TAATTTT
1 ATATTAATTTT
50098256 AAAAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:50098298 original size:17 final size:18
Alignment explanation
Indices: 50098257--50098296 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
50098247 TATAATTTTA
*
50098257 AAAAATATATAAACTATC
1 AAAAATATAAAAACTATC
50098275 AAAAATACTAAAAAC-ATC
1 AAAAATA-TAAAAACTATC
50098293 AAAA
1 AAAA
50098297 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATATAAAAACTATC
Found at i:50098446 original size:16 final size:16
Alignment explanation
Indices: 50098425--50098465 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
50098415 TGTTTAAAAT
50098425 AATAAAATAAATTAAC
1 AATAAAATAAATTAAC
* *
50098441 AATAAAACAAATTTAC
1 AATAAAATAAATTAAC
*
50098457 AACAAAATA
1 AATAAAATA
50098466 GTAGCAACAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.22
Consensus pattern (16 bp):
AATAAAATAAATTAAC
Found at i:50098498 original size:11 final size:11
Alignment explanation
Indices: 50098459--50098499 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
50098449 AAATTTACAA
50098459 CAAAATAGTAG
1 CAAAATAGTAG
* *
50098470 CAACATAATAG
1 CAAAATAGTAG
*
50098481 TAAAATAGTAG
1 CAAAATAGTAG
50098492 CAAAATAG
1 CAAAATAG
50098500 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:50100338 original size:14 final size:15
Alignment explanation
Indices: 50100313--50100341 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
50100303 CGTACGTAGT
50100313 AATGAGAAATATATA
1 AATGAGAAATATATA
50100328 AATGA-AAATATATA
1 AATGAGAAATATATA
50100342 TATATAGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (15 bp):
AATGAGAAATATATA
Found at i:50100656 original size:2 final size:2
Alignment explanation
Indices: 50100651--50100687 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
50100641 TGCAAAAAAA
50100651 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50100688 AATGTTATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:50102787 original size:88 final size:88
Alignment explanation
Indices: 50102685--50102848 Score: 224
Period size: 88 Copynumber: 1.9 Consensus size: 88
50102675 TATAATTTGG
* * **
50102685 TCTGTTACTCTACTGCTTAGGGT-TTAAG-ATCTTATGGACATCAGCTTGTTACCCTACTGCTTA
1 TCTGTTACCCTACTGCTTAGGGTGAT-AGTATC-TATAAACATCAGCTTGTTACCCTACTGCTTA
50102748 GGAAGTTAAAGCTCGCTGCTTTCGA
64 GGAAGTTAAAGCTCGCTGCTTTCGA
* *
50102773 TCTGTTTCCCTACTGCTTAGGGTGATAGTATCTATAAACTTCAGCTTGTTACCCTACTGCTTAGG
1 TCTGTTACCCTACTGCTTAGGGTGATAGTATCTATAAACATCAGCTTGTTACCCTACTGCTTAGG
**
50102838 GGGTTAAAGCT
66 AAGTTAAAGCT
50102849 TGGTGGTTTG
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
88 62 0.94
89 4 0.06
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (88 bp):
TCTGTTACCCTACTGCTTAGGGTGATAGTATCTATAAACATCAGCTTGTTACCCTACTGCTTAGG
AAGTTAAAGCTCGCTGCTTTCGA
Found at i:50103274 original size:44 final size:44
Alignment explanation
Indices: 50103117--50103290 Score: 149
Period size: 44 Copynumber: 4.0 Consensus size: 44
50103107 GGGAGACAAA
** * * *
50103117 ATCTGTAATTTTCAGCCTATTACCCTACTACTTAGGGGGTTAAG
1 ATCTGTAAACTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAG
* **
50103161 GTCTGTAAA-TTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAG
1 ATCTGTAAACTTCAGCTTGTTACCCTACTGCTTAGGGGGTT-AAG
* * * * * * *
50103205 CTCAT-T-ATCTTC-GATCTGTTTCCCTATTGCTTAGGGTGATAAG
1 ATC-TGTAAACTTCAGCT-TGTTACCCTACTGCTTAGGGGGTTAAG
*
50103248 ATCTGTAAACTTCAGCTTGTTACCCTACTGCTGAGGGGGTTAA
1 ATCTGTAAACTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAA
50103291 AGCTTGGTGG
Statistics
Matches: 100, Mismatches: 23, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
42 1 0.01
43 35 0.35
44 61 0.61
45 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.37
Consensus pattern (44 bp):
ATCTGTAAACTTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAG
Found at i:50117605 original size:26 final size:27
Alignment explanation
Indices: 50117576--50117633 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
50117566 TTTTTAAAAT
* *
50117576 TTTTATAATTTTTTTAAA-AATATAAA
1 TTTTAGAATTTTTATAAATAATATAAA
* *
50117602 TTTTAGAATTTTTATAAATATTTTAAA
1 TTTTAGAATTTTTATAAATAATATAAA
50117629 TTTTA
1 TTTTA
50117634 AAAATTATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (27 bp):
TTTTAGAATTTTTATAAATAATATAAA
Found at i:50120716 original size:21 final size:20
Alignment explanation
Indices: 50120692--50120730 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
50120682 AAGAGAGGCA
*
50120692 CATGCCCGTGTGGACTAGGGG
1 CATGCCCGTG-GGAATAGGGG
*
50120713 CATGGCCGTGGGAATAGG
1 CATGCCCGTGGGAATAGG
50120731 CCGTGTAGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.18, C:0.21, G:0.44, T:0.18
Consensus pattern (20 bp):
CATGCCCGTGGGAATAGGGG
Found at i:50132283 original size:15 final size:16
Alignment explanation
Indices: 50132263--50132296 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
50132253 GAGTATAATA
50132263 AAATA-TTAAAAAAAG
1 AAATATTTAAAAAAAG
50132278 AAATATTTAAAAAAAG
1 AAATATTTAAAAAAAG
50132294 AAA
1 AAA
50132297 CACATGTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (16 bp):
AAATATTTAAAAAAAG
Found at i:50137539 original size:21 final size:21
Alignment explanation
Indices: 50137515--50137574 Score: 66
Period size: 22 Copynumber: 2.8 Consensus size: 21
50137505 ACACGAGCTC
50137515 GTGCCTAAGTCACACGGGCGT
1 GTGCCTAAGTCACACGGGCGT
* *
50137536 GTGCCTCTATTCACACGGGCGT
1 GTGCCT-AAGTCACACGGGCGT
* * *
50137558 GTTCCTCAGCCACACGG
1 GTGCCTAAGTCACACGG
50137575 CCATATGCCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 14 0.44
22 18 0.56
ACGTcount: A:0.17, C:0.33, G:0.28, T:0.22
Consensus pattern (21 bp):
GTGCCTAAGTCACACGGGCGT
Found at i:50137551 original size:22 final size:22
Alignment explanation
Indices: 50137524--50137608 Score: 73
Period size: 22 Copynumber: 3.9 Consensus size: 22
50137514 CGTGCCTAAG
50137524 TCACACGGGCGTGTGCCTCTAT
1 TCACACGGGCGTGTGCCTCTAT
* *
50137546 TCACACGGGCGTGTTCCTC-AG
1 TCACACGGGCGTGTGCCTCTAT
* * * * *
50137567 CCACACGGCCATATGCCTCTTT
1 TCACACGGGCGTGTGCCTCTAT
* *
50137589 TTACACGGGCTTGTGACCTC
1 TCACACGGGCGTGTG-CCTC
50137609 CCACACAGCC
Statistics
Matches: 47, Mismatches: 14, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
21 15 0.32
22 28 0.60
23 4 0.09
ACGTcount: A:0.15, C:0.34, G:0.24, T:0.27
Consensus pattern (22 bp):
TCACACGGGCGTGTGCCTCTAT
Found at i:50140292 original size:2 final size:2
Alignment explanation
Indices: 50140285--50140327 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
50140275 AATAATACTT
*
50140285 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50140327 T
1 T
50140328 TTTTTTATGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:50146784 original size:21 final size:21
Alignment explanation
Indices: 50146758--50146798 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
50146748 ATCTGCTCAA
* *
50146758 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
50146779 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
50146799 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:50152426 original size:30 final size:30
Alignment explanation
Indices: 50152392--50152454 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
50152382 ACTTAACAAG
*
50152392 CAAATGCCTCTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
50152422 CAAATGCCTTTAAAATTATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
50152452 CAA
1 CAA
50152455 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.14, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:50152509 original size:22 final size:22
Alignment explanation
Indices: 50152484--50152526 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
50152474 TATCTAAACA
50152484 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
50152506 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
50152527 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:50153742 original size:38 final size:38
Alignment explanation
Indices: 50153694--50153866 Score: 181
Period size: 38 Copynumber: 4.6 Consensus size: 38
50153684 ATACCGACAT
* * *
50153694 AAAGCCTGCTAGGCACGGAGCCCTAATAAT-ATCTGCAC
1 AAAGCCTGCTAGGCACGAAGCCCAAAT-ATCATCGGCAC
* ** * * *
50153732 AAAGCATGCTAGATACAAAGCCCAAATAACATAGGCAC
1 AAAGCCTGCTAGGCACGAAGCCCAAATATCATCGGCAC
* *
50153770 AAAGCCTACTAGGCACGAAGCTCAAATATCATCGGCAC
1 AAAGCCTGCTAGGCACGAAGCCCAAATATCATCGGCAC
* *
50153808 AAAGCCTGTTAGGCA-GTGAGCCCAAATATCA-CTGGCAC
1 AAAGCCTGCTAGGCACG-AAGCCCAAATATCATC-GGCAC
50153846 AAAGCCTGCTAGGCACGAAGC
1 AAAGCCTGCTAGGCACGAAGC
50153867 TCGAATAACG
Statistics
Matches: 108, Mismatches: 23, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
37 3 0.03
38 104 0.96
39 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.21, T:0.16
Consensus pattern (38 bp):
AAAGCCTGCTAGGCACGAAGCCCAAATATCATCGGCAC
Found at i:50164866 original size:27 final size:27
Alignment explanation
Indices: 50164825--50164879 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
50164815 TTAAGCTAGA
*
50164825 ACTTATTTTCTATCTAACCTCACCATC
1 ACTTATTTTCCATCTAACCTCACCATC
50164852 ACTTATTTTCCATCTAACCTCACCATC
1 ACTTATTTTCCATCTAACCTCACCATC
50164879 A
1 A
50164880 TCCAAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.35, G:0.00, T:0.38
Consensus pattern (27 bp):
ACTTATTTTCCATCTAACCTCACCATC
Found at i:50165319 original size:24 final size:24
Alignment explanation
Indices: 50165290--50165362 Score: 101
Period size: 24 Copynumber: 3.0 Consensus size: 24
50165280 AACGACTCAT
*
50165290 CTGGAAGAAACAGTCATGTCAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
* *
50165314 CTGGAAGAAGCAGTCACGTAAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
* *
50165338 CTGGAAGAAGCAGCCATGGCAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
50165362 C
1 C
50165363 AATTACACTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.36, C:0.23, G:0.29, T:0.12
Consensus pattern (24 bp):
CTGGAAGAAGCAGTCATGTCAGCA
Found at i:50169286 original size:23 final size:23
Alignment explanation
Indices: 50169256--50169301 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
50169246 TAGGATTGAT
** *
50169256 ATCGCGACATGAGGGAGTTCCTC
1 ATCGCGACACAAGGAAGTTCCTC
50169279 ATCGCGACACAAGGAAGTTCCTC
1 ATCGCGACACAAGGAAGTTCCTC
50169302 GTCGTGACGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (23 bp):
ATCGCGACACAAGGAAGTTCCTC
Found at i:50176951 original size:53 final size:53
Alignment explanation
Indices: 50176810--50176960 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
50176800 ACAAGTGTGC
* **
50176810 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
50176863 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
50176916 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
50176961 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:50184464 original size:53 final size:53
Alignment explanation
Indices: 50184323--50184473 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
50184313 ACAAGTGTGC
* **
50184323 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
50184376 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
50184429 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
50184474 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:50198533 original size:16 final size:16
Alignment explanation
Indices: 50198504--50198555 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
50198494 TCAATATTCT
* *
50198504 TATAATATATAAATTA
1 TATAAAATAAAAATTA
50198520 TATAAAATAAAAATTA
1 TATAAAATAAAAATTA
*
50198536 TAAAAACATTAAAAA-TA
1 TATAAA-A-TAAAAATTA
50198553 TAT
1 TAT
50198556 TAATGATTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 19 0.63
17 5 0.17
18 6 0.20
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (16 bp):
TATAAAATAAAAATTA
Found at i:50208445 original size:101 final size:101
Alignment explanation
Indices: 50208322--50208523 Score: 395
Period size: 101 Copynumber: 2.0 Consensus size: 101
50208312 AACTAGTTAA
50208322 AAAGGACTAAATCAAAAAAGATGCAAAAGTTGGTTTCTATTAGTCAAATAGATCAAAAAGCTTTA
1 AAAGGACTAAATCAAAAAAGATGCAAAAGTTGGTTTCTATTAGTCAAATAGATCAAAAAGCTTTA
50208387 AAAAGATAAACTAATGGACTTCAATGGTAATTATAC
66 AAAAGATAAACTAATGGACTTCAATGGTAATTATAC
*
50208423 AAAGGACTAAATCGAAAAAGATGCAAAAGTTGGTTTCTATTAGTCAAATAGATCAAAAAGCTTTA
1 AAAGGACTAAATCAAAAAAGATGCAAAAGTTGGTTTCTATTAGTCAAATAGATCAAAAAGCTTTA
50208488 AAAAGATAAACTAATGGACTTCAATGGTAATTATAC
66 AAAAGATAAACTAATGGACTTCAATGGTAATTATAC
50208524 CATACTTAAA
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 100 1.00
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.27
Consensus pattern (101 bp):
AAAGGACTAAATCAAAAAAGATGCAAAAGTTGGTTTCTATTAGTCAAATAGATCAAAAAGCTTTA
AAAAGATAAACTAATGGACTTCAATGGTAATTATAC
Found at i:50211876 original size:12 final size:12
Alignment explanation
Indices: 50211859--50211907 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
50211849 CATTAATTAA
50211859 TTAATTTTTATG
1 TTAATTTTTATG
*
50211871 TTAATTTTTTTTG
1 TTAA-TTTTTATG
*
50211884 TGACAATTTTTATG
1 T--TAATTTTTATG
50211898 TTAATTTTTA
1 TTAATTTTTA
50211908 ATAAACATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
12 12 0.40
13 8 0.27
14 8 0.27
15 2 0.07
ACGTcount: A:0.24, C:0.02, G:0.08, T:0.65
Consensus pattern (12 bp):
TTAATTTTTATG
Found at i:50211919 original size:27 final size:27
Alignment explanation
Indices: 50211861--50211919 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
50211851 TTAATTAATT
** **
50211861 AATTTTTATGTTAATTTTTTTTGTGAC
1 AATTTTTATGTTAATTTTTAATGAAAC
50211888 AATTTTTATGTTAATTTTTAAT-AAAC
1 AATTTTTATGTTAATTTTTAATGAAAC
50211914 ATATTT
1 A-ATTT
50211920 ATTACATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.11
27 24 0.89
ACGTcount: A:0.31, C:0.03, G:0.07, T:0.59
Consensus pattern (27 bp):
AATTTTTATGTTAATTTTTAATGAAAC
Found at i:50223104 original size:36 final size:36
Alignment explanation
Indices: 50223057--50223128 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
50223047 GAGATGTGGA
50223057 ATTATACACAGATATGTTCAGTTTCCTCCAAGTTTT
1 ATTATACACAGATATGTTCAGTTTCCTCCAAGTTTT
50223093 ATTATACACAGATATGTTCAGTTTCCTCCAAGTTTT
1 ATTATACACAGATATGTTCAGTTTCCTCCAAGTTTT
50223129 TCATATATGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.42
Consensus pattern (36 bp):
ATTATACACAGATATGTTCAGTTTCCTCCAAGTTTT
Found at i:50233269 original size:20 final size:19
Alignment explanation
Indices: 50233232--50233270 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
50233222 CAGAATGCTA
*
50233232 ATTTGGTATCAATTTTTTT
1 ATTTGGTATCAATATTTTT
*
50233251 ATTTGAGTATCGATATTTTT
1 ATTTG-GTATCAATATTTTT
50233271 TTATAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.23, C:0.05, G:0.13, T:0.59
Consensus pattern (19 bp):
ATTTGGTATCAATATTTTT
Found at i:50233271 original size:22 final size:19
Alignment explanation
Indices: 50233232--50233274 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 19
50233222 CAGAATGCTA
50233232 ATTTGGTATCAATTTTTTT
1 ATTTGGTATCAATTTTTTT
50233251 ATTTGAGTATCGATATTTTTTT
1 ATTTG-GTATC-A-ATTTTTTT
50233273 AT
1 AT
50233275 AAAATATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 5 0.24
21 1 0.05
22 10 0.48
ACGTcount: A:0.23, C:0.05, G:0.12, T:0.60
Consensus pattern (19 bp):
ATTTGGTATCAATTTTTTT
Found at i:50233362 original size:12 final size:12
Alignment explanation
Indices: 50233347--50233371 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50233337 TTTTGGTATC
50233347 GATTTTCAAAAA
1 GATTTTCAAAAA
50233359 GATTTTCAAAAA
1 GATTTTCAAAAA
50233371 G
1 G
50233372 GTATCGATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (12 bp):
GATTTTCAAAAA
Found at i:50234457 original size:34 final size:33
Alignment explanation
Indices: 50234405--50234500 Score: 122
Period size: 34 Copynumber: 2.9 Consensus size: 33
50234395 TTAGAGTTTT
* * *
50234405 TTTAAAA-AATTAATTAAATTAGGTTTTAAAGG
1 TTTAAAATAAATAAATAAATTAGGGTTTAAAGG
**
50234437 TTTAAAATAAATAAACTAAATTAGGGTTTATGGG
1 TTTAAAATAAATAAA-TAAATTAGGGTTTAAAGG
50234471 TTTAAAATAAATAAATAAAATTAGGGTTTA
1 TTTAAAATAAATAAAT-AAATTAGGGTTTA
50234501 GTTTTTTTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
32 7 0.12
33 6 0.11
34 43 0.77
ACGTcount: A:0.48, C:0.01, G:0.14, T:0.38
Consensus pattern (33 bp):
TTTAAAATAAATAAATAAATTAGGGTTTAAAGG
Found at i:50238093 original size:12 final size:12
Alignment explanation
Indices: 50238078--50238104 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
50238068 GCTCCCCGAT
50238078 GATGTCTCGTGC
1 GATGTCTCGTGC
50238090 GATGTCTCGTGC
1 GATGTCTCGTGC
50238102 GAT
1 GAT
50238105 CCCTCCTGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.11, C:0.22, G:0.33, T:0.33
Consensus pattern (12 bp):
GATGTCTCGTGC
Found at i:50238244 original size:18 final size:18
Alignment explanation
Indices: 50238207--50238244 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
50238197 GAAAAAGGAA
* *
50238207 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAGAAT
50238225 ACATATAAGGGCTAGAAT
1 ACATATAAGGGCTAGAAT
50238243 AC
1 AC
50238245 GCACTTGGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.24
Consensus pattern (18 bp):
ACATATAAGGGCTAGAAT
Found at i:50241752 original size:2 final size:2
Alignment explanation
Indices: 50241745--50241773 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
50241735 TTCTTTTCTT
50241745 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
50241774 GAAATGTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:50249618 original size:27 final size:26
Alignment explanation
Indices: 50249588--50249671 Score: 69
Period size: 27 Copynumber: 3.1 Consensus size: 26
50249578 AAAATATAAG
*
50249588 TACTTAATTAGGACAAAAAAACTTAAA
1 TACTTAAATAGGA-AAAAAAACTTAAA
* * *** *
50249615 TACTAAAATATTGAAGTTAAACTAAAA
1 TACTTAAATA-GGAAAAAAAACTTAAA
50249642 TACTTAAATAGGATAAAAAGAACTTAAA
1 TACTTAAATAGGA-AAAAA-AACTTAAA
50249670 TA
1 TA
50249672 TCAATTTTTT
Statistics
Matches: 41, Mismatches: 13, Indels: 5
0.69 0.22 0.08
Matches are distributed among these distances:
26 2 0.05
27 28 0.68
28 11 0.27
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.27
Consensus pattern (26 bp):
TACTTAAATAGGAAAAAAAACTTAAA
Found at i:50250093 original size:22 final size:22
Alignment explanation
Indices: 50250067--50250110 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
50250057 ATTAAGAATG
50250067 CTTAAATTATTAATTTTTCAAA
1 CTTAAATTATTAATTTTTCAAA
50250089 CTTAAATTATTAATTTTTCAAA
1 CTTAAATTATTAATTTTTCAAA
50250111 AGATTTAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (22 bp):
CTTAAATTATTAATTTTTCAAA
Found at i:50258147 original size:2 final size:2
Alignment explanation
Indices: 50258140--50258183 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
50258130 CAAAGCCTTT
50258140 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50258182 TA
1 TA
50258184 CGCGTATCGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:50259872 original size:20 final size:19
Alignment explanation
Indices: 50259834--50259876 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
50259824 TAATTTTTTT
*
50259834 ATTTTTTATTTTTTAAATA
1 ATTTTTTAATTTTTAAATA
50259853 CATTTTTATAATTTTT-AATA
1 -ATTTTT-TAATTTTTAAATA
50259873 ATTT
1 ATTT
50259877 ATTCAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 10 0.48
21 7 0.33
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (19 bp):
ATTTTTTAATTTTTAAATA
Found at i:50266695 original size:26 final size:26
Alignment explanation
Indices: 50266644--50266697 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
50266634 ATTCTGGATT
* *
50266644 ATTTGAATCCGTAAAATTGTCTTAAA
1 ATTTGAATCCGTAAAATTATCGTAAA
*
50266670 ATTTGAATCCG-CAAATTATCCGTAAA
1 ATTTGAATCCGTAAAATTAT-CGTAAA
50266696 AT
1 AT
50266698 ATTTGACTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (26 bp):
ATTTGAATCCGTAAAATTATCGTAAA
Found at i:50269261 original size:5 final size:5
Alignment explanation
Indices: 50269260--50269288 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
50269250 GACACAATAC
50269260 AAACA AAACA AAACA AAACA AAACA AAAC
1 AAACA AAACA AAACA AAACA AAACA AAAC
50269289 CACCCCCAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACA
Found at i:50278087 original size:3 final size:3
Alignment explanation
Indices: 50278079--50278126 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
50278069 AGAACTTTAA
50278079 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
50278127 TAAGCCATTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:50278833 original size:29 final size:28
Alignment explanation
Indices: 50278744--50278834 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 28
50278734 TTCTTTATAT
**
50278744 TTTTATAATTTTCTTACGACT-TAATAAAA
1 TTTTATAATTTT-TTACGA-TATTTTAAAA
* * * *
50278773 TTTTATAATTTTTTTCTATATCTTACATA
1 TTTTATAATTTTTTACGATATTTTA-AAA
*
50278802 TTTTATAATTTTTTACGATTTTTGTAAAA
1 TTTTATAATTTTTTACGATATTT-TAAAA
50278831 TTTT
1 TTTT
50278835 TAAAAAAATA
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
27 1 0.02
28 7 0.14
29 39 0.80
30 2 0.04
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.58
Consensus pattern (28 bp):
TTTTATAATTTTTTACGATATTTTAAAA
Found at i:50278871 original size:17 final size:19
Alignment explanation
Indices: 50278847--50278893 Score: 64
Period size: 17 Copynumber: 2.6 Consensus size: 19
50278837 AAAAAATATA
50278847 TAATTTTTTTAC-AATTTT
1 TAATTTTTTTACTAATTTT
50278865 T-ATTTTTTT-CTAATTTT
1 TAATTTTTTTACTAATTTT
50278882 TAATATTTTTTA
1 TAAT-TTTTTTA
50278894 GTAAAATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 1 0.04
17 15 0.60
18 3 0.12
19 6 0.24
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (19 bp):
TAATTTTTTTACTAATTTT
Found at i:50278923 original size:20 final size:19
Alignment explanation
Indices: 50278849--50278923 Score: 64
Period size: 20 Copynumber: 3.9 Consensus size: 19
50278839 AAAATATATA
*
50278849 ATTTTTT-TACAATTTTTAT
1 ATTTTTTATA-AATTTTAAT
* *
50278868 -TTTTTTCTAATTTTTAAT
1 ATTTTTTATAAATTTTAAT
*
50278886 ATTTTTTAGTAAAATTTAAT
1 ATTTTTTA-TAAATTTTAAT
*
50278906 AATTTTTTATAACTTTTA
1 -ATTTTTTATAAATTTTA
50278924 TTAAATAACA
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
18 13 0.29
19 8 0.18
20 16 0.36
21 8 0.18
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (19 bp):
ATTTTTTATAAATTTTAAT
Found at i:50282613 original size:20 final size:19
Alignment explanation
Indices: 50282577--50282618 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
50282567 AATTTTTATT
50282577 TTTAATTTTTTAATTTTGAA
1 TTTAATTTTTTAATTTT-AA
*
50282597 TTTAATTTTATT-TTTTTAA
1 TTTAATTTT-TTAATTTTAA
50282616 TTT
1 TTT
50282619 TTTTATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 5 0.25
20 13 0.65
21 2 0.10
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTAATTTTTTAATTTTAA
Found at i:50284545 original size:16 final size:17
Alignment explanation
Indices: 50284520--50284553 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
50284510 AAATTTATAA
*
50284520 ATAAAGTATT-AAAAAT
1 ATAAAATATTCAAAAAT
50284536 ATAAAATATTCAAAAAT
1 ATAAAATATTCAAAAAT
50284553 A
1 A
50284554 ATCAATCGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (17 bp):
ATAAAATATTCAAAAAT
Found at i:50285364 original size:30 final size:31
Alignment explanation
Indices: 50285323--50285395 Score: 107
Period size: 30 Copynumber: 2.4 Consensus size: 31
50285313 TTTATGTAAC
50285323 TATATATATATTTTATATTTTTATAA-AATTT
1 TATA-ATATATTTTATATTTTTATAATAATTT
*
50285354 TATAATATATTTTATCTTTTTATAATAATTT
1 TATAATATATTTTATATTTTTATAATAATTT
50285385 T-T-ATATATTTT
1 TATAATATATTTT
50285396 GAAGTTTTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
29 9 0.22
30 21 0.52
31 10 0.25
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (31 bp):
TATAATATATTTTATATTTTTATAATAATTT
Found at i:50285385 original size:12 final size:11
Alignment explanation
Indices: 50285337--50285395 Score: 54
Period size: 10 Copynumber: 5.6 Consensus size: 11
50285327 TATATATTTT
50285337 ATATTTTTATA
1 ATATTTTTATA
*
50285348 A-AATTTTATA
1 ATATTTTTATA
*
50285358 ATATATTT-T-
1 ATATTTTTATA
*
50285367 ATCTTTTTATA
1 ATATTTTTATA
50285378 ATAATTTTTAT-
1 AT-ATTTTTATA
50285389 ATATTTT
1 ATATTTT
50285396 GAAGTTTTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
9 6 0.16
10 16 0.42
11 9 0.24
12 7 0.18
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (11 bp):
ATATTTTTATA
Found at i:50285404 original size:30 final size:28
Alignment explanation
Indices: 50285325--50285410 Score: 95
Period size: 30 Copynumber: 3.0 Consensus size: 28
50285315 TATGTAACTA
50285325 TATATATATTTTATATTTTTATAAAATTT
1 TATATATATTTTA-ATTTTTATAAAATTT
*
50285354 TATAATATATTTTATCTTTTTATAATAATTT
1 TAT-ATATATTTTA-ATTTTTATAA-AATTT
*
50285385 T-TATATATTTTGAAGTTTT-TAAAATT
1 TATATATATTTT-AATTTTTATAAAATT
50285411 ATAATTTTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
27 4 0.08
28 3 0.06
29 16 0.31
30 22 0.43
31 6 0.12
ACGTcount: A:0.36, C:0.01, G:0.02, T:0.60
Consensus pattern (28 bp):
TATATATATTTTAATTTTTATAAAATTT
Found at i:50298936 original size:28 final size:28
Alignment explanation
Indices: 50298868--50298959 Score: 102
Period size: 28 Copynumber: 3.4 Consensus size: 28
50298858 GATATGACAT
* * *
50298868 TGTGCTAAGTGGAATAAGACCATGAC-A
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
50298895 --T-CTAAGTGAAATAAGTCTATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
50298920 TGTGCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
50298948 TGTGCTCAGTGA
1 TGTGCTAAGTGA
50298960 GAAATTTCCC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
24 18 0.33
25 2 0.04
27 1 0.02
28 33 0.61
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGTCCATGGCAA
Found at i:50299067 original size:51 final size:51
Alignment explanation
Indices: 50298983--50299080 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 51
50298973 TGAACCTTAG
*
50298983 GAATAAAATAACTTTGGAAACAAGTGTGATACTATGTGAAGGCCACTTTGT
1 GAATAAAATAACTTTGGAAACAAGGGTGATACTATGTGAAGGCCACTTTGT
* ** *
50299034 GAATAAAATAGCTTTGGCTACAAGGGTGGTACTATGTGAAGGCCACT
1 GAATAAAATAACTTTGGAAACAAGGGTGATACTATGTGAAGGCCACT
50299081 GTGTATCCAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (51 bp):
GAATAAAATAACTTTGGAAACAAGGGTGATACTATGTGAAGGCCACTTTGT
Found at i:50300847 original size:40 final size:41
Alignment explanation
Indices: 50300758--50300907 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
50300748 CGCTGACTCA
*
50300758 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCTC
* * * * * * * *
50300799 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTT
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCTC
50300839 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCTC
50300880 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
50300908 TAAACCCCAA
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 60 0.66
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCTC
Found at i:50308914 original size:40 final size:41
Alignment explanation
Indices: 50308825--50308974 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
50308815 CGCTGACTCA
* *
50308825 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * * *
50308866 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTT
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
50308906 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
50308947 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
50308975 TAAACCCCGA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 61 0.66
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:50318160 original size:40 final size:40
Alignment explanation
Indices: 50318104--50318321 Score: 208
Period size: 40 Copynumber: 5.5 Consensus size: 40
50318094 CATGAGCATT
* *
50318104 TGAATGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAAT-ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* *
50318145 TGAATATATCCGGGCTAAGTCCCGAAGGCATTTACGCTAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* ** *
50318185 TGATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* * *
50318225 TTG-TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG
1 -TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
** * * * * *
50318265 AT-ACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTG
1 -TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
**
50318305 TGGTTATATCC-GGCTAA
1 TGAATATATCCGGGCTAA
50318322 ATTCCGAAGA
Statistics
Matches: 151, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
39 6 0.04
40 138 0.91
41 7 0.05
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
Found at i:50326705 original size:10 final size:10
Alignment explanation
Indices: 50326682--50326726 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
50326672 ATTCTAAAAA
50326682 ATAAATACAA-
1 ATAAATA-AAG
50326692 ATAAATAAAG
1 ATAAATAAAG
*
50326702 ATAATTAAAG
1 ATAAATAAAG
*
50326712 ATAAATAAAT
1 ATAAATAAAG
50326722 ATAAA
1 ATAAA
50326727 AGCTAAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
9 2 0.06
10 29 0.94
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.24
Consensus pattern (10 bp):
ATAAATAAAG
Found at i:50328003 original size:9 final size:9
Alignment explanation
Indices: 50327989--50328058 Score: 52
Period size: 9 Copynumber: 7.4 Consensus size: 9
50327979 ATTATTTTAG
50327989 AAAATTTTT
1 AAAATTTTT
50327998 AAAA-TTTT
1 AAAATTTTT
*
50328006 AACATTTTTT
1 AA-AATTTTT
*
50328016 ATATATTTTTT
1 A-A-AATTTTT
*
50328027 AAATTTTTTT
1 AAA-ATTTTT
*
50328037 AAAATTTTA
1 AAAATTTTT
*
50328046 AAAATATTT
1 AAAATTTTT
50328055 AAAA
1 AAAA
50328059 ATATAAATTT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
8 6 0.12
9 21 0.41
10 15 0.29
11 9 0.18
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.54
Consensus pattern (9 bp):
AAAATTTTT
Found at i:50328025 original size:11 final size:11
Alignment explanation
Indices: 50328009--50328054 Score: 51
Period size: 10 Copynumber: 4.4 Consensus size: 11
50327999 AAATTTTAAC
*
50328009 ATTTTTTATAT
1 ATTTTTTAAAT
50328020 ATTTTTTAAAT
1 ATTTTTTAAAT
50328031 -TTTTTTAAA-
1 ATTTTTTAAAT
**
50328040 ATTTTAAAAAT
1 ATTTTTTAAAT
50328051 ATTT
1 ATTT
50328055 AAAAATATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
10 16 0.53
11 14 0.47
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
ATTTTTTAAAT
Found at i:50330923 original size:48 final size:48
Alignment explanation
Indices: 50330852--50330951 Score: 191
Period size: 48 Copynumber: 2.1 Consensus size: 48
50330842 TTTCACAACT
50330852 CAAATCTTATGAGCTCCTCAACGAATTCAAGATTAAGCATTTGAAGAC
1 CAAATCTTATGAGCTCCTCAACGAATTCAAGATTAAGCATTTGAAGAC
*
50330900 CAAATCTTATGTGCTCCTCAACGAATTCAAGATTAAGCATTTGAAGAC
1 CAAATCTTATGAGCTCCTCAACGAATTCAAGATTAAGCATTTGAAGAC
50330948 CAAA
1 CAAA
50330952 AAAGATGTCA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (48 bp):
CAAATCTTATGAGCTCCTCAACGAATTCAAGATTAAGCATTTGAAGAC
Found at i:50333262 original size:6 final size:6
Alignment explanation
Indices: 50333251--50333290 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
50333241 TGAATTAATT
*
50333251 CAAATC CAAATC TAAATC CAAATC CAAATC CAAATC CAAA
1 CAAATC CAAATC CAAATC CAAATC CAAATC CAAATC CAAA
50333291 CAACGGTCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.53, C:0.30, G:0.00, T:0.17
Consensus pattern (6 bp):
CAAATC
Found at i:50335208 original size:18 final size:18
Alignment explanation
Indices: 50335171--50335209 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
50335161 ATGATGACAT
***
50335171 TTTTTGTTTTCGTTTTTG
1 TTTTTGTTTTCGTGCGTG
50335189 TTTTTGTTTTCGTGCGTG
1 TTTTTGTTTTCGTGCGTG
50335207 TTT
1 TTT
50335210 GGTATAGTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.08, G:0.21, T:0.72
Consensus pattern (18 bp):
TTTTTGTTTTCGTGCGTG
Found at i:50336754 original size:8 final size:8
Alignment explanation
Indices: 50336743--50336767 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
50336733 TTTGGTATTG
50336743 ATTTAAAA
1 ATTTAAAA
50336751 ATTTAAAA
1 ATTTAAAA
50336759 ATTTAAAA
1 ATTTAAAA
50336767 A
1 A
50336768 CATTATATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
ATTTAAAA
Found at i:50339460 original size:15 final size:17
Alignment explanation
Indices: 50339440--50339471 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
50339430 ATGAAAGAAT
50339440 CTTGAG-CTT-CAAAGA
1 CTTGAGACTTGCAAAGA
50339455 CTTGAGACTTGCAAAGA
1 CTTGAGACTTGCAAAGA
50339472 GAATACGACC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 3 0.20
17 6 0.40
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (17 bp):
CTTGAGACTTGCAAAGA
Found at i:50341392 original size:15 final size:15
Alignment explanation
Indices: 50341372--50341403 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
50341362 GTCAACTCCA
50341372 ACAAATAATCCAAAG
1 ACAAATAATCCAAAG
50341387 ACAAATAATCCAAAG
1 ACAAATAATCCAAAG
50341402 AC
1 AC
50341404 CTCCATTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.22, G:0.06, T:0.12
Consensus pattern (15 bp):
ACAAATAATCCAAAG
Found at i:50341907 original size:9 final size:8
Alignment explanation
Indices: 50341894--50341934 Score: 50
Period size: 7 Copynumber: 5.2 Consensus size: 8
50341884 ATAAAAGGAC
*
50341894 TAAAATTA
1 TAAAAATA
50341902 TAAAAATA
1 TAAAAATA
50341910 T-AAAATA
1 TAAAAATA
50341917 T-AAAATA
1 TAAAAATA
50341924 TAAAAACTA
1 TAAAAA-TA
50341933 TA
1 TA
50341935 TTCTATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
7 14 0.47
8 12 0.40
9 4 0.13
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (8 bp):
TAAAAATA
Found at i:50341916 original size:7 final size:7
Alignment explanation
Indices: 50341894--50341928 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
50341884 ATAAAAGGAC
50341894 TAAAATTA
1 TAAAA-TA
50341902 TAAAAATA
1 T-AAAATA
50341910 TAAAATA
1 TAAAATA
50341917 TAAAATA
1 TAAAATA
50341924 TAAAA
1 TAAAA
50341929 ACTATATTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 18 0.69
8 4 0.15
9 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
TAAAATA
Found at i:50342476 original size:9 final size:9
Alignment explanation
Indices: 50342462--50342529 Score: 73
Period size: 9 Copynumber: 7.6 Consensus size: 9
50342452 ATAAGTATAA
50342462 AATTAACCG
1 AATTAACCG
50342471 AATTAACCG
1 AATTAACCG
* *
50342480 AATTACCCA
1 AATTAACCG
*
50342489 AATTACCCG
1 AATTAACCG
* *
50342498 AATTATCCA
1 AATTAACCG
*
50342507 AATTAACAG
1 AATTAACCG
*
50342516 AATTAACTG
1 AATTAACCG
50342525 AATTA
1 AATTA
50342530 TCTGTATAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.46, C:0.21, G:0.07, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:50342530 original size:27 final size:27
Alignment explanation
Indices: 50342461--50342531 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
50342451 AATAAGTATA
* * *
50342461 AAATTAACCGAATTAACCGAATTACCC
1 AAATTAACCGAATTATCCAAATTACAC
*
50342488 AAATTACCCGAATTATCCAAATTA-AC
1 AAATTAACCGAATTATCCAAATTACAC
*
50342514 AGAATTAACTGAATTATC
1 A-AATTAACCGAATTATC
50342532 TGTATAAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
26 2 0.05
27 35 0.95
ACGTcount: A:0.45, C:0.21, G:0.07, T:0.27
Consensus pattern (27 bp):
AAATTAACCGAATTATCCAAATTACAC
Found at i:50342771 original size:19 final size:19
Alignment explanation
Indices: 50342747--50342793 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
50342737 TATTAATTTT
50342747 TTCGGTTAAACCGAAAAAA
1 TTCGGTTAAACCGAAAAAA
*
50342766 TTCGGTTAAATCGAAAAAA
1 TTCGGTTAAACCGAAAAAA
50342785 TTCGGTTAA
1 TTCGGTTAA
50342794 CTGACTGGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.28
Consensus pattern (19 bp):
TTCGGTTAAACCGAAAAAA
Found at i:50343119 original size:23 final size:22
Alignment explanation
Indices: 50343093--50343141 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
50343083 TTTCTTTTTA
50343093 TTTTATTT-TTTATTTTCTCTCAT
1 TTTTATTTCTTT-TTTTCT-TCAT
* *
50343116 TTTTGTTTCTTTTTTTCTTCTT
1 TTTTATTTCTTTTTTTCTTCAT
50343138 TTTT
1 TTTT
50343142 CTGGCTCTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 7 0.30
23 13 0.57
24 3 0.13
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.80
Consensus pattern (22 bp):
TTTTATTTCTTTTTTTCTTCAT
Found at i:50344124 original size:11 final size:11
Alignment explanation
Indices: 50344108--50344147 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
50344098 GGGGAGAAAG
50344108 TTAAAATTTTT
1 TTAAAATTTTT
50344119 TTAAAATATTTT
1 TTAAAAT-TTTT
*
50344131 TT-AAATATTT
1 TTAAAATTTTT
50344141 TTAAAAT
1 TTAAAAT
50344148 GATGATGTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 5 0.19
11 15 0.58
12 6 0.23
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
TTAAAATTTTT
Found at i:50351350 original size:40 final size:39
Alignment explanation
Indices: 50351239--50351389 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
50351229 TTAATCACGT
* * *
50351239 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
50351279 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
50351319 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
50351359 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
50351390 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:50351373 original size:80 final size:79
Alignment explanation
Indices: 50351239--50351389 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
50351229 TTAATCACGT
*
50351239 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
50351304 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
50351319 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
50351382 CCGGATAT
64 CCGGATAT
50351390 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:50359359 original size:40 final size:39
Alignment explanation
Indices: 50359248--50359398 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
50359238 TTAATCACGT
* * *
50359248 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
50359288 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
50359328 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
50359368 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
50359399 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:50359382 original size:80 final size:79
Alignment explanation
Indices: 50359248--50359398 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
50359238 TTAATCACGT
*
50359248 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
50359313 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
50359328 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
50359391 CCGGATAT
64 CCGGATAT
50359399 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:50362260 original size:22 final size:22
Alignment explanation
Indices: 50362235--50362282 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
50362225 GTATTGTTAG
**
50362235 TTAAGGGTGGTAAATAACTTAA
1 TTAAGGGTAATAAATAACTTAA
* *
50362257 TTAAGGGTAATAATTAGCTTAA
1 TTAAGGGTAATAAATAACTTAA
50362279 TTAA
1 TTAA
50362283 TAATTAATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.04, G:0.19, T:0.35
Consensus pattern (22 bp):
TTAAGGGTAATAAATAACTTAA
Found at i:50363728 original size:47 final size:48
Alignment explanation
Indices: 50363657--50363877 Score: 198
Period size: 46 Copynumber: 4.8 Consensus size: 48
50363647 TATGAGAGTC
50363657 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC-ATGAGCT
* * * * * *
50363705 AGTGTAAGA-AATGTCTGGGACAT-GCATCGGCCTCGTGACATAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACATGAGCT
* * *
50363751 AGTGTAAGA-CATGCCTGGGACAT-GCATCGGC--T-ACGAGATGTG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GACATGAGCT
*
50363794 CAGTGTAAGACCATGTCTGGGACATGGTATC--CACTTGATGA-ATGAG-T
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TTGA-GACATGAGCT
*
50363841 CAGTGTAAGACCATGTCTGGGATATGGCATCGGCATT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
50363878 ATACCCTGTA
Statistics
Matches: 142, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
44 15 0.11
45 14 0.10
46 49 0.35
47 48 0.34
48 14 0.10
49 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACATGAGCT
Found at i:50366124 original size:14 final size:14
Alignment explanation
Indices: 50366107--50366133 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50366097 TCTTTACTTT
50366107 TTTTTTAATTTTTG
1 TTTTTTAATTTTTG
50366121 TTTTTTAATTTTT
1 TTTTTTAATTTTT
50366134 CTTGTTTGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.04, T:0.81
Consensus pattern (14 bp):
TTTTTTAATTTTTG
Found at i:50371399 original size:5 final size:5
Alignment explanation
Indices: 50371389--50371416 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
50371379 CCAATTTGTA
50371389 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
50371417 GAACACCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:50374505 original size:225 final size:221
Alignment explanation
Indices: 50374124--50374560 Score: 739
Period size: 225 Copynumber: 2.0 Consensus size: 221
50374114 TAATTAGATC
* * * *
50374124 ATTCAACAAAATAAGAAATCTGAATCCTATGTTATTCGGATTTGGGTGAGTCTGTGTTCAGTTTT
1 ATTCAACAAAACAAGAAATCTGAATACTATGTTATTCGGATTTGGATGAGTCTGAGTTCAGTTTT
* * *
50374189 TCATGTATTTGGTAGGTTCTTGCCTATCCGTATATATATGTCGAAATGTGTTGAATACAGTTATT
66 TCATGTATTTGGTAGGTTCTTGCCTATCCCTATATATATGTCGAAATGTATTGAATACAGGTATT
50374254 TCAGTCAGAATGAACAGTTGAAGCAGCACAGTCTGAATTTTCTAGTAGTTTTAGCACCAGCCATA
131 TCAGTCAGAATGAACAGTTGAAGCAGCACAGTCTGAATTTTCTAGTAGTTTTAGCACCAGCCATA
50374319 TTGGTAATAATAATGAATCCTATGTT
196 TTGGTAATAATAATGAATCCTATGTT
* *
50374345 ATTCAACAAAACAAGAAATTTGAATACTATGTTATTCGGATTTGGATGAGTTTGAGTTCAGTTTT
1 ATTCAACAAAACAAGAAATCTGAATACTATGTTATTCGGATTTGGATGAGTCTGAGTTCAGTTTT
*
50374410 TCATGTATTTGGTGGGTTCTTGGGGTCCTATCCCTATATATATGTCGAAATGTATTGAATACAGG
66 TCATGTATTTGGTAGGTTCTT---G-CCTATCCCTATATATATGTCGAAATGTATTGAATACAGG
*
50374475 TATTTCCGTCAGAATGAACAGTTGAAGCAGCACAGTCTGAATTTTCTAGTAGTTTTAGCACCAGC
127 TATTTCAGTCAGAATGAACAGTTGAAGCAGCACAGTCTGAATTTTCTAGTAGTTTTAGCACCAGC
50374540 CATATTGGTAATAATAATGAA
192 CATATTGGTAATAATAATGAA
50374561 ACTACGATGC
Statistics
Matches: 201, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
221 79 0.39
224 1 0.00
225 121 0.60
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (221 bp):
ATTCAACAAAACAAGAAATCTGAATACTATGTTATTCGGATTTGGATGAGTCTGAGTTCAGTTTT
TCATGTATTTGGTAGGTTCTTGCCTATCCCTATATATATGTCGAAATGTATTGAATACAGGTATT
TCAGTCAGAATGAACAGTTGAAGCAGCACAGTCTGAATTTTCTAGTAGTTTTAGCACCAGCCATA
TTGGTAATAATAATGAATCCTATGTT
Found at i:50380195 original size:21 final size:21
Alignment explanation
Indices: 50380171--50380226 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
50380161 TACTGCTGTT
* *
50380171 TCTAATCACACCGCTATAGTA
1 TCTAATCTCACCGCTACAGTA
**
50380192 TCTAATCTCACTACTACAGTA
1 TCTAATCTCACCGCTACAGTA
*
50380213 TCCAATCTCACCGC
1 TCTAATCTCACCGC
50380227 CACCATTGTT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.34, G:0.07, T:0.29
Consensus pattern (21 bp):
TCTAATCTCACCGCTACAGTA
Found at i:50380729 original size:53 final size:53
Alignment explanation
Indices: 50380623--50380730 Score: 164
Period size: 53 Copynumber: 2.0 Consensus size: 53
50380613 AAGAACCCCT
* * *
50380623 ATAATCAAGGATTGACTCAATCCTAAATAAAGAAATAAATAAAATATCTTCAA
1 ATAATCAAGGATTGACTCAATCCTAAAGAAAGAAAGAAATAAAATACCTTCAA
*
50380676 ATAATCAAGGATTGACTTAATCCTAAAGAAAGAAAGAAATAAAAT-CCTATCAA
1 ATAATCAAGGATTGACTCAATCCTAAAGAAAGAAAGAAATAAAATACCT-TCAA
50380729 AT
1 AT
50380731 TTGTCTCAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
52 2 0.04
53 48 0.96
ACGTcount: A:0.53, C:0.13, G:0.09, T:0.25
Consensus pattern (53 bp):
ATAATCAAGGATTGACTCAATCCTAAAGAAAGAAAGAAATAAAATACCTTCAA
Found at i:50390288 original size:13 final size:12
Alignment explanation
Indices: 50390254--50390306 Score: 56
Period size: 12 Copynumber: 4.2 Consensus size: 12
50390244 ACAGACTTTA
50390254 TTTTTAAAATAT
1 TTTTTAAAATAT
50390266 TTTTAATAAATATAT
1 TTTT--TAAA-ATAT
50390281 TTTTTAAAAT-T
1 TTTTTAAAATAT
50390292 TTATTTAAAAT-T
1 TT-TTTAAAATAT
50390304 TTT
1 TTT
50390307 ATAATTTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
11 4 0.11
12 17 0.46
13 4 0.11
14 4 0.11
15 8 0.22
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTTAAAATAT
Found at i:50393535 original size:40 final size:40
Alignment explanation
Indices: 50393491--50393676 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
50393481 ACTACTCGTT
* *
50393491 CAAATGCCTTCGGGACATGGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
50393531 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
50393571 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
50393611 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
50393652 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50393677 CATCATTCGA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:50401647 original size:78 final size:80
Alignment explanation
Indices: 50401518--50401691 Score: 234
Period size: 78 Copynumber: 2.2 Consensus size: 80
50401508 GCTACTCGTT
50401518 CAAATGCCTTCGGGAC-ATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTC-GGACTATA-CCCGGTTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
50401581 GGATT-TAGTAACTCGCA
63 GGATTATAGTAACTAGCA
**
50401598 CAAATGCCTTCGGACTATA-CCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGACTATACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
50401661 ATTATAGTCACTAGCA
65 ATTATAGTAACTAGCA
50401677 CAAA-GCCTTCGGACT
1 CAAATGCCTTCGGACT
50401692 TAGCGANTAA
Statistics
Matches: 86, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
77 3 0.03
78 49 0.57
79 20 0.23
80 14 0.16
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGACTATACCCGGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTATAGTAACTAGCA
Found at i:50401689 original size:40 final size:39
Alignment explanation
Indices: 50401518--50401694 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 39
50401508 GCTACTCGTT
* *
50401518 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGTCCGGATT-TAGTAACTCGCA
**
50401558 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGTCCGGATTTAGTAACTCGCA
50401598 CAAATGCCTTCGGAC-TA-TACCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGT-CCGGATTTAGTAACTCGCA
* *
50401636 CAAATGCCTTCGGATCTTAGTCCGGATTATAGTCACTAGCA
1 CAAATGCCTTCGGA-CTTAGTCCGGATT-TAGTAACTCGCA
50401677 CAAA-GCCTTCGGACTTAG
1 CAAATGCCTTCGGACTTAG
50401695 CGANTAATGT
Statistics
Matches: 126, Mismatches: 5, Indels: 13
0.88 0.03 0.09
Matches are distributed among these distances:
38 35 0.28
39 10 0.08
40 64 0.51
41 17 0.13
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGTCCGGATTTAGTAACTCGCA
Found at i:50403445 original size:40 final size:40
Alignment explanation
Indices: 50403360--50403510 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
50403350 AATTGAATGA
* * * **
50403360 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
50403400 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
50403441 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
50403480 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
50403511 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:50403524 original size:40 final size:40
Alignment explanation
Indices: 50403397--50403526 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
50403387 ATGCTGGAAA
* * *
50403397 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
50403437 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
50403477 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
50403517 TTATATCCGG
1 TTATATCCGG
50403527 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:50412319 original size:29 final size:29
Alignment explanation
Indices: 50412286--50412417 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
50412276 GTGACGAGAT
*
50412286 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
50412315 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
50412344 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
50412373 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
50412402 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50412418 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:50414792 original size:40 final size:40
Alignment explanation
Indices: 50414665--50414794 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
50414655 ATGCTGGAAA
* * *
50414665 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
50414705 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
50414745 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
50414785 TTATATCCGG
1 TTATATCCGG
50414795 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:50416312 original size:3 final size:3
Alignment explanation
Indices: 50416304--50416354 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
50416294 GAATGGTAAG
50416304 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
50416352 TAT
1 TAT
50416355 GGTATTGAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:50438773 original size:24 final size:24
Alignment explanation
Indices: 50438746--50438793 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
50438736 TCTTCAAACT
* *
50438746 TACCCCTGTTCTGCTATCTGACAG
1 TACCCCTGTCCTGCTATCTAACAG
50438770 TACCCCTGTCCTGCTATCTAACAG
1 TACCCCTGTCCTGCTATCTAACAG
50438794 CTTCGACCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (24 bp):
TACCCCTGTCCTGCTATCTAACAG
Found at i:50450357 original size:44 final size:44
Alignment explanation
Indices: 50450294--50450458 Score: 201
Period size: 44 Copynumber: 3.7 Consensus size: 44
50450284 CCCCCCTAAG
*
50450294 TGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTT-GCATCCATAA
* *
50450338 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTGCATCCATAA
* * *
50450385 CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTTGCATCCATAA
50450429 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
50450459 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
42 5 0.05
43 1 0.01
44 59 0.57
47 31 0.30
48 2 0.02
49 3 0.03
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (44 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACGTTGCATCCATAA
Found at i:50450404 original size:91 final size:91
Alignment explanation
Indices: 50450295--50450461 Score: 291
Period size: 91 Copynumber: 1.8 Consensus size: 91
50450285 CCCCCTAAGT
*
50450295 GAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCATAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-GCATCCATAATGAACTCGGACTCAACTCAAC
50450359 GAGTTCGGATGCCTAGTTACATCTCAC
65 GAGTTCGGATGCCTAGTTACATCTCAC
* *
50450386 GAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCATAGTGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTGCATCCATAATGAACTCGGACTCAACTCAACG
50450451 AGTTCGGATGC
66 AGTTCGGATGC
50450462 TCAACCATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 69 0.96
92 3 0.04
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTGCATCCATAATGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:50450915 original size:30 final size:30
Alignment explanation
Indices: 50450881--50450940 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50450871 ATTTAATACG
50450881 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
50450911 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
50450941 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:50457941 original size:47 final size:49
Alignment explanation
Indices: 50457826--50457999 Score: 172
Period size: 44 Copynumber: 3.8 Consensus size: 49
50457816 AACCCGCCCC
* * * *
50457826 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGT-TC-G---CATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
**
50457870 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCA
* * *
50457918 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
*
50457963 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
50458000 TCAACCATCC
Statistics
Matches: 108, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
43 6 0.06
44 34 0.31
45 3 0.03
46 29 0.27
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (49 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
Found at i:50457988 original size:93 final size:91
Alignment explanation
Indices: 50457831--50457999 Score: 284
Period size: 93 Copynumber: 1.8 Consensus size: 91
50457821 GCCCCTAAGT
*
50457831 GAACTCGGACTCAACTCAACGAGCTCGGGTTCGCATCCATAAATGAACTCGGACTCAACTCAACG
1 GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAATGAACTCGGACTCAACTCAACG
50457896 AGTTCGGATGCCTAGTTACATCTCAC
66 AGTTCGGATGCCTAGTTACATCTCAC
* * *
50457922 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG--ATTCGCATCCATAAATGAACTCGGACTCAACTCAA
50457987 CGAGTTCGGATGC
64 CGAGTTCGGATGC
50458000 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 27 0.38
93 45 0.62
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATTCGCATCCATAAATGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:50465496 original size:46 final size:45
Alignment explanation
Indices: 50465352--50465519 Score: 153
Period size: 46 Copynumber: 3.7 Consensus size: 45
50465342 CTCCCCTAAG
* * * *
50465352 TGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATTAA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA-TAA
* * * * *
50465398 TAAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCATAA
* * *
50465445 -CAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAA
50465489 GTGAACTCGGACTCAACTCAACGAGCTCGGA
1 -TGAACTCGGACTCAACTCAACGAGCTCGGA
50465520 TGCTCAACCA
Statistics
Matches: 97, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
42 6 0.06
43 2 0.02
44 2 0.02
46 79 0.81
47 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAA
Found at i:50465511 original size:92 final size:92
Alignment explanation
Indices: 50465354--50465522 Score: 250
Period size: 92 Copynumber: 1.8 Consensus size: 92
50465344 CCCCTAAGTG
* * * *
50465354 AACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATTAATAAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATTAATAAACTCGGACTCAACTCAAC
*
50465419 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGCTCGGATGCCTAGTTACATCTCAC
* * *
50465446 AACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA-TAAGTGAACTCGGACTCAACTCAA
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATTAA-TAAACTCGGACTCAACTCAA
50465510 CGAGCTCGGATGC
65 CGAGCTCGGATGC
50465523 TCAACCATCC
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
91 3 0.04
92 65 0.96
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (92 bp):
AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATTAATAAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCAC
Found at i:50468888 original size:27 final size:27
Alignment explanation
Indices: 50468858--50468972 Score: 185
Period size: 27 Copynumber: 4.3 Consensus size: 27
50468848 CCTGTAAGAT
50468858 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
** *
50468885 AGAATTACTGTCTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
50468912 AGAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
50468939 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
50468966 AAAATTA
1 AGAATTA
50468973 TTGAAATACC
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.37
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:50468982 original size:27 final size:27
Alignment explanation
Indices: 50468691--50469092 Score: 177
Period size: 27 Copynumber: 14.9 Consensus size: 27
50468681 AATACTTTAG
* *
50468691 TTTACCAAATTACCCAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ** * *
50468718 CTTGTAAAATTACCAAAGTACCCTCAA
1 TTTACAAAATTACCAAAATACCCTCGA
* * *
50468745 TTTATAAAATTACCCAAATATCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** * * *
50468772 TTTGTAAAATAATCGAAATACCCTC-A
1 TTTACAAAATTACCAAAATACCCTCGA
* ** *
50468798 GTTTGCAAAATTACTGAAATACCCTCAA
1 -TTTACAAAATTACCAAAATACCCTCGA
** ** *
50468826 TTTGTAAAATTACTGAAATAGTCCT-G-
1 TTTACAAAATTACCAAAATA-CCCTCGA
* * ***
50468852 -TAAGATAGAATTACCATTTTACCCTCGA
1 TTTACA-A-AATTACCAAAATACCCTCGA
* *****
50468880 TTTACAGAATTACTGTCTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* ***
50468907 TTTACAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
* * ***
50468934 TTTATAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
*** * *
50468961 TTTACAAAATTATTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTCGA
50468988 TTTACAAAATTACCAAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCTCGA
** * *
50469015 TCAATAAAATTACCAAAATACCC-CTGG
1 TTTACAAAATTACCAAAATACCCTC-GA
**
50469042 TTTGTAAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTACCAAAATACCCTC-GA
*** *
50469069 TTTGTGAAATTACCGAAATACCCT
1 TTTACAAAATTACCAAAATACCCT
50469093 TGTAGGGTAG
Statistics
Matches: 296, Mismatches: 69, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
25 2 0.01
26 6 0.02
27 281 0.95
28 4 0.01
29 3 0.01
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTCGA
Found at i:50468983 original size:81 final size:81
Alignment explanation
Indices: 50468790--50469029 Score: 234
Period size: 81 Copynumber: 3.0 Consensus size: 81
50468780 ATAATCGAAA
* * ** ** *
50468790 TACCCTC-AGTTTGCAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAATAGTCCT-G-
1 TACCCTCGA-TTTACAAAATTACTGAAATACCCTCGATTTACAAAATTACCAAAATA-CCCTCGA
*
50468852 TAAGATAGAATTACCATTT
64 TCA-ATAGAATTACCATTT
* *** * *** *
50468871 TACCCTCGATTTACAGAATTACTGTCTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATC
*
50468936 TATAGAATTACCATTT
66 AATAGAATTACCATTT
* * *
50468952 TACCCTCGATTTACAAAATTATTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATC
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATC
*
50469017 AATAAAATTACCA
66 AATAGAATTACCA
50469030 AAATACCCCT
Statistics
Matches: 125, Mismatches: 31, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
80 3 0.02
81 120 0.96
82 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATC
AATAGAATTACCATTT
Found at i:50469037 original size:81 final size:81
Alignment explanation
Indices: 50468697--50469037 Score: 222
Period size: 81 Copynumber: 4.2 Consensus size: 81
50468687 TTAGTTTACC
* * ** * * * *
50468697 AAATTACCCAAATACCCTCGACTTGTAAAATTAC-CAAAGTACCCTCAATTTATAAAATTACCCA
1 AAATTACCAAAATACCCTCGATTTACAAAATTACTGAAA-TACCCTCGATTTACAAAATTACCAA
* ***
50468761 AATATCCTCGATTTGTA
65 AATACCCTCGATCAATA
* * * * * ** **
50468778 AAATAATCGAAATACCCTC-AGTTTGCAAAATTACTGAAATACCCTCAATTTGTAAAATTACTGA
1 AAATTACCAAAATACCCTCGA-TTTACAAAATTACTGAAATACCCTCGATTTACAAAATTACCAA
* *
50468842 AATAGTCCT-G-TAAGATA
65 AATA-CCCTCGATCA-ATA
* *** * *** * **
50468859 GAATTACCATTTTACCCTCGATTTACAGAATTACTGTCTTACCCTCGATTTACAGAATTACCATT
1 AAATTACCAAAATACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTACAAAATTACCAAA
* **
50468924 TTACCCTCGATTTATA
66 ATACCCTCGATCAATA
* *** * * *
50468940 GAATTACCATTTTACCCTCGATTTACAAAATTATTGAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTACAAAATTACCAAA
50469005 ATACCCTCGATCAATA
66 ATACCCTCGATCAATA
50469021 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
50469038 CTGGTTTGTA
Statistics
Matches: 200, Mismatches: 53, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
80 5 0.03
81 186 0.93
82 9 0.05
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.32
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTACAAAATTACCAAA
ATACCCTCGATCAATA
Found at i:50469106 original size:27 final size:27
Alignment explanation
Indices: 50469076--50469298 Score: 275
Period size: 27 Copynumber: 8.3 Consensus size: 27
50469066 TGATTTGTGA
50469076 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
50469103 AATTACTGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
50469130 AATTATCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
50469157 AATTATCGAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
50469184 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
50469211 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
50469238 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** * * *
50469265 AATTACCGGGATACTCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
50469292 AATTACC
1 AATTACC
50469299 ATTTTGCCCC
Statistics
Matches: 167, Mismatches: 29, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 167 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:50469107 original size:54 final size:54
Alignment explanation
Indices: 50469021--50469271 Score: 249
Period size: 54 Copynumber: 4.6 Consensus size: 54
50469011 TCGATCAATA
* ** * **
50469021 AAATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTG-ATTTGTG
1 AAATTACCGAAATACCCCT-GTAAGGTAGAATTACCAAAATACCCCTGTA-GGGTG
* * ** *
50469075 AAATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTG
* * * * **
50469129 AAATTATCGAAATACCCTTGTAAGGTAGAATTATCGAAATACCTTTGTAGGGT-
1 AAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTG
* * *
50469182 AGAATTACTGAAATACCCCTGTAAGGTAGAATTACTAAAATACCCTTGTAGGGTAG
1 A-AATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGGT-G
*
50469238 AAA-TACCGAAATACCCCTGTAGGGTAGAATTACC
1 AAATTACCGAAATACCCCTGTAAGGTAGAATTACC
50469272 GGGATACTCT
Statistics
Matches: 166, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
53 3 0.02
54 159 0.96
55 3 0.02
56 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (54 bp):
AAATTACCGAAATACCCCTGTAAGGTAGAATTACCAAAATACCCCTGTAGGGTG
Found at i:50469107 original size:81 final size:80
Alignment explanation
Indices: 50469022--50469299 Score: 274
Period size: 81 Copynumber: 3.4 Consensus size: 80
50469012 CGATCAATAA
* ** * **
50469022 AATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAA
1 AATTACCGAAATACCCCT-GTAAGGTAAAATTACCAAAATACCCTTG-TAAGTGAAATTACCGAA
50469086 ATACCCTTGTAGGGTAG
64 ATACCCTTGTAGGGTAG
* * * * *
50469103 AATTACTGAAATACCCCTGTAGGGTAAAATTATCGAAATACCCTTGTAAG-GTAGAATTATCGAA
1 AATTACCGAAATACCCCTGTAAGGTAAAATTACCAAAATACCCTTGTAAGTG-A-AATTACCGAA
*
50469167 ATACCTTTGTAGGGTAG
64 ATACCCTTGTAGGGTAG
* * * *
50469184 AATTACTGAAATACCCCTGTAAGGTAGAATTACTAAAATACCCTTGTAGGGTAGAAA-TACCGAA
1 AATTACCGAAATACCCCTGTAAGGTAAAATTACCAAAATACCCTTGTA-AGT-GAAATTACCGAA
*
50469248 ATACCCCTGTAGGGTAG
64 ATACCCTTGTAGGGTAG
** * * **
50469265 AATTACCGGGATACTCTTGTGGGGTAAAATTACCA
1 AATTACCGAAATACCCCTGTAAGGTAAAATTACCA
50469300 TTTTGCCCCT
Statistics
Matches: 162, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
79 1 0.01
80 5 0.03
81 151 0.93
82 3 0.02
83 1 0.01
84 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (80 bp):
AATTACCGAAATACCCCTGTAAGGTAAAATTACCAAAATACCCTTGTAAGTGAAATTACCGAAAT
ACCCTTGTAGGGTAG
Found at i:50469732 original size:6 final size:6
Alignment explanation
Indices: 50469701--50469757 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
50469691 TTGCATTCAC
* *
50469701 ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
50469749 AGTTCTG AT
1 A-TTCTG AT
50469758 AATGTTTCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 2 0.05
6 35 0.83
7 4 0.10
8 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:50471670 original size:93 final size:93
Alignment explanation
Indices: 50471563--50471735 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
50471553 CGCCCATAAG
* * * *
50471563 CGAACTCAGACTCAACTCAACGAGCTT-GGGCGTTTGCATCCATAAGTGAACTCGGGCTCAACTC
1 CGAACTCAGACTCAACTCAACGAG-TTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTC
50471627 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
50471656 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
50471721 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
50471736 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:50471726 original size:46 final size:46
Alignment explanation
Indices: 50471556--50471731 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
50471546 TGTAACCCGC
* * * *
50471556 CCATAAGCGAACTCAGACTCAACTCAACGAGCTT-GGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACGCTAGCAT
* * * *
50471602 CCATAAGTGAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG-CTAG---CAT
* *
50471652 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTAGCAT
*
50471695 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
50471732 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 3 0.03
46 63 0.59
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTAGCAT
Found at i:50471750 original size:46 final size:45
Alignment explanation
Indices: 50471607--50471750 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
50471597 TGCATCCATA
* * * *
50471607 AGTGAACTCGGGCTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
50471655 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
50471700 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
50471746 AGTGA
1 AGTGA
50471751 CATGTCACTT
Statistics
Matches: 76, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.49
47 29 0.38
48 5 0.07
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:50477864 original size:5 final size:5
Alignment explanation
Indices: 50477854--50477884 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
50477844 CATAGGATTA
*
50477854 TTCTT TTCTT TTTTT TTCTT TTCTT TTCTT T
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT T
50477885 CTTCTTCTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (5 bp):
TTCTT
Done.