Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 171 of 335
Found at i:50849210 original size:13 final size:13
Alignment explanation
Indices: 50849192--50849219 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
50849182 TTTACATATA
50849192 ATAAATCAAGATT
1 ATAAATCAAGATT
50849205 ATAAATCAAGATT
1 ATAAATCAAGATT
50849218 AT
1 AT
50849220 CAAGAATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (13 bp):
ATAAATCAAGATT
Found at i:50853691 original size:24 final size:21
Alignment explanation
Indices: 50853632--50853697 Score: 55
Period size: 24 Copynumber: 3.0 Consensus size: 21
50853622 GTATAATGTT
50853632 ATTTAAATGTATTTTTATTAAGA
1 ATTTAAATG-ATTTTTATTAA-A
*
50853655 TATTAAAAT-ATTTGTTAATTAAA
1 -ATTTAAATGATTT-TT-ATTAAA
50853678 ATTTATAATGATTTTT-TTAA
1 ATTTA-AATGATTTTTATTAA
50853698 TTGAGAAAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
21 4 0.11
22 8 0.22
23 8 0.22
24 16 0.44
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (21 bp):
ATTTAAATGATTTTTATTAAA
Found at i:50860312 original size:43 final size:42
Alignment explanation
Indices: 50860165--50860329 Score: 149
Period size: 43 Copynumber: 3.9 Consensus size: 42
50860155 TTGCGTCATA
* * *
50860165 TGATTTCATGTAAGACCACGTCTAGGAC-GTTGGCATCGACT-TC
1 TGATTACATGTAAGACCATGTCTGGGACAG-TGGCATC-A-TATC
* *
50860208 TGTTTTACATGTAAGACCATGTCTGGGATA-TCGGCATCATATC
1 TG-ATTACATGTAAGACCATGTCTGGGACAGT-GGCATCATATC
* * * * *
50860251 TGATTTCGTGAAAGACCATGTCTGGGACAGTGGCATCAATGTT
1 TGATTACATGTAAGACCATGTCTGGGACAGTGGCATC-ATATC
50860294 TGATTACATGTAAGACCATGTCTGGGAC-GTTGGCAT
1 TGATTACATGTAAGACCATGTCTGGGACAG-TGGCAT
50860330 TGTTTATGTT
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
42 30 0.30
43 43 0.43
44 27 0.27
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (42 bp):
TGATTACATGTAAGACCATGTCTGGGACAGTGGCATCATATC
Found at i:50876480 original size:8 final size:8
Alignment explanation
Indices: 50876467--50876536 Score: 54
Period size: 8 Copynumber: 8.2 Consensus size: 8
50876457 TTATTTTCTC
50876467 AAAAATTT
1 AAAAATTT
50876475 AAAAATTACT
1 AAAAATT--T
*
50876485 AATAATTT
1 AAAAATTT
*
50876493 AATAAATTG
1 AA-AAATTT
50876502 AAAAA-TT
1 AAAAATTT
50876509 AAATAATTT
1 AAA-AATTT
50876518 AATAAAATTT
1 -A-AAAATTT
50876528 -AAAATTT
1 AAAAATTT
50876535 AA
1 AA
50876537 GAGGTCTCAC
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
7 11 0.22
8 16 0.32
9 8 0.16
10 13 0.26
11 2 0.04
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.37
Consensus pattern (8 bp):
AAAAATTT
Found at i:50876519 original size:25 final size:26
Alignment explanation
Indices: 50876469--50876523 Score: 85
Period size: 25 Copynumber: 2.1 Consensus size: 26
50876459 ATTTTCTCAA
*
50876469 AAATTTAAAAATTACTAATAATTTAAT
1 AAATTGAAAAATTAC-AATAATTTAAT
50876496 AAATTGAAAAATTA-AATAATTTAAT
1 AAATTGAAAAATTACAATAATTTAAT
50876521 AAA
1 AAA
50876524 ATTTAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 14 0.52
27 13 0.48
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (26 bp):
AAATTGAAAAATTACAATAATTTAAT
Found at i:50876531 original size:25 final size:26
Alignment explanation
Indices: 50876468--50876533 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 26
50876458 TATTTTCTCA
50876468 AAAATTTAAAAATTACTAATAATTTAAT
1 AAAATTT-AAAATTAC-AATAATTTAAT
*
50876496 -AAATTGAAAAATTA-AATAATTTAAT
1 AAAATT-TAAAATTACAATAATTTAAT
50876521 AAAATTTAAAATT
1 AAAATTTAAAATT
50876534 TAAGAGGTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
25 17 0.50
26 5 0.15
27 12 0.35
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (26 bp):
AAAATTTAAAATTACAATAATTTAAT
Found at i:50876536 original size:17 final size:18
Alignment explanation
Indices: 50876468--50876529 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
50876458 TATTTTCTCA
*
50876468 AAAATTTAA-AAATTACT
1 AAAATTTAATAAATTAAT
*
50876485 AATAATTTAATAAATTGA-
1 AA-AATTTAATAAATTAAT
* *
50876503 AAAATTAAATAATTTAAT
1 AAAATTTAATAAATTAAT
50876521 AAAATTTAA
1 AAAATTTAA
50876530 AATTTAAGAG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
17 14 0.39
18 17 0.47
19 5 0.14
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
AAAATTTAATAAATTAAT
Found at i:50883670 original size:48 final size:49
Alignment explanation
Indices: 50883607--50883821 Score: 251
Period size: 48 Copynumber: 4.5 Consensus size: 49
50883597 TACCAATGTT
* * * *
50883607 ATGTCCCCGACATGGTCTTACATGAATC-CACATATCATCGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGAAGCACACATATCATCACCGATGCC
* * *
50883655 ATATCCTAGACATGGTCTTACACTG--GCACACATATCATCGCCGATGCC
1 ATGTCCCAGACATGGTCTTACA-TGAAGCACACATATCATCACCGATGCC
* *
50883703 ATGTCCCAGACATGGTCTTACA-CAGGCACACATATCATCACCGATGCC
1 ATGTCCCAGACATGGTCTTACATGAAGCACACATATCATCACCGATGCC
* * * * * *
50883751 ATGTCGCAAACATGGTCTTAGA-CAGGCACATATATCATCACCGATGCC
1 ATGTCCCAGACATGGTCTTACATGAAGCACACATATCATCACCGATGCC
50883799 ATGTCCCAGACATGGTCTTACAT
1 ATGTCCCAGACATGGTCTTACAT
50883822 AGGATCTCAT
Statistics
Matches: 146, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
47 1 0.01
48 143 0.98
49 2 0.01
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (49 bp):
ATGTCCCAGACATGGTCTTACATGAAGCACACATATCATCACCGATGCC
Found at i:50883779 original size:96 final size:96
Alignment explanation
Indices: 50883607--50883821 Score: 290
Period size: 96 Copynumber: 2.2 Consensus size: 96
50883597 TACCAATGTT
* * * * *
50883607 ATGTCCCCGACATGGTCTTACATGAATCCACATATCATCGCCAATGCCATATCCTAGACATGGTC
1 ATGTCCCAGACATGGTCTTACATCAAGCCACATATCATCACCAATGCCATATCCTAAACATGGTC
* *
50883672 TTACACTGGCACACATATCATCGCCGATGCC
66 TTACACAGGCACACATATCATCACCGATGCC
* * *
50883703 ATGTCCCAGACATGGTCTTACA-CAGGCACACATATCATCACCGATGCCATGTCGC-AAACATGG
1 ATGTCCCAGACATGGTCTTACATCAAGC-CACATATCATCACCAATGCCATATC-CTAAACATGG
* *
50883766 TCTTAGACAGGCACATATATCATCACCGATGCC
64 TCTTACACAGGCACACATATCATCACCGATGCC
50883799 ATGTCCCAGACATGGTCTTACAT
1 ATGTCCCAGACATGGTCTTACAT
50883822 AGGATCTCAT
Statistics
Matches: 104, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
95 2 0.02
96 101 0.97
97 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (96 bp):
ATGTCCCAGACATGGTCTTACATCAAGCCACATATCATCACCAATGCCATATCCTAAACATGGTC
TTACACAGGCACACATATCATCACCGATGCC
Found at i:50902416 original size:42 final size:42
Alignment explanation
Indices: 50902331--50902494 Score: 121
Period size: 42 Copynumber: 3.9 Consensus size: 42
50902321 TAGGGTTATG
* *
50902331 TGTGATTTCGTGTAAGACCATATCTAGGATATGGCATTAATA
1 TGTGATTTCGTGAAAGACCATATCTAGGATATGGCATCAATA
* * * * *
50902373 TGTGATTTTGTGAAAGACCATGTCTGGGATATGGTATCGATA
1 TGTGATTTCGTGAAAGACCATATCTAGGATATGGCATCAATA
* ** * * * * * *
50902415 TGAGACATCATGTAAGACCATAGCTGGGCTATCGGCATCGATA
1 TGTGATTTCGTGAAAGACCATATCTAGGATAT-GGCATCAATA
** * * * *
50902458 TGTGATACCATGTAAGGCCATATCTGGGATATGGCAT
1 TGTGATTTCGTGAAAGACCATATCTAGGATATGGCAT
50902495 TGGCATCTTA
Statistics
Matches: 98, Mismatches: 23, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
42 63 0.64
43 35 0.36
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTGATTTCGTGAAAGACCATATCTAGGATATGGCATCAATA
Found at i:50902470 original size:43 final size:42
Alignment explanation
Indices: 50902386--50902494 Score: 130
Period size: 43 Copynumber: 2.6 Consensus size: 42
50902376 GATTTTGTGA
* *
50902386 AAGACCAT-GTCTGGGATATGGTATCGATATGAGACATCATGT
1 AAGACCATAG-CTGGGATATGGCATCGATATGAGACACCATGT
* * *
50902428 AAGACCATAGCTGGGCTATCGGCATCGATATGTGATACCATGT
1 AAGACCATAGCTGGGATAT-GGCATCGATATGAGACACCATGT
* *
50902471 AAGGCCATATCTGGGATATGGCAT
1 AAGACCATAGCTGGGATATGGCAT
50902495 TGGCATCTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
42 21 0.37
43 36 0.63
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (42 bp):
AAGACCATAGCTGGGATATGGCATCGATATGAGACACCATGT
Found at i:50905116 original size:80 final size:80
Alignment explanation
Indices: 50904951--50905137 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
50904941 AATTGAATGA
* * * * *
50904951 TATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
50905016 TTGTGCTAGTGGCTAC
66 TTGTGCGAGT-GCTAC
*
50905032 -ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-A
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
50905095 TTCGTGCGAGT-CATTC
66 TT-GTGCGAGTGC-TAC
*
50905111 TATCCGGGCTAAGACCCGAAGG-CATTT
1 TATCCGGGCTAAGTCCCG-AGGACATTT
50905138 GTGCAAATCG
Statistics
Matches: 93, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 5 0.05
80 84 0.90
81 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCGAGTGCTAC
Found at i:50905154 original size:80 final size:79
Alignment explanation
Indices: 50904990--50905156 Score: 178
Period size: 80 Copynumber: 2.1 Consensus size: 79
50904980 GCTGGAAATT
* * *
50904990 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGTCCCGAGGACA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GCTACATCCGGGCTAAGACCCGAGGACA
* * *
50905055 TTTATGCTAGTAATT
65 TTTATGCAAATAATG
*
50905070 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-CATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGC-TAC-ATCCGGGCTAAGACCCG-AGG
* **
50905133 -CATTTGTGCAAATCGTG
62 ACATTTATGCAAATAATG
50905150 ATATCCG
1 ATATCCG
50905157 AGTTAAGTCC
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
78 1 0.01
79 5 0.07
80 64 0.88
81 3 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGCTACATCCGGGCTAAGACCCGAGGACAT
TTATGCAAATAATG
Found at i:50905156 original size:40 final size:39
Alignment explanation
Indices: 50904989--50905143 Score: 152
Period size: 40 Copynumber: 3.9 Consensus size: 39
50904979 TGCTGGAAAT
* * *
50904989 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT--CA
* * * * *
50905029 TACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAA
1 TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTCA
* *
50905068 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA
*
50905108 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
50905144 ATCGTGATAT
Statistics
Matches: 96, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 90 0.94
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA
Found at i:50909186 original size:11 final size:10
Alignment explanation
Indices: 50909144--50909185 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
50909134 TAGTTAAGTA
50909144 TATTCATTTT
1 TATTCATTTT
50909154 TATT-ATTTT
1 TATTCATTTT
*
50909163 TGTTCACTTTT
1 TATTCA-TTTT
50909174 TCATTCATTTT
1 T-ATTCATTTT
50909185 T
1 T
50909186 CCATAACATA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 8 0.30
10 5 0.19
11 10 0.37
12 4 0.15
ACGTcount: A:0.17, C:0.12, G:0.02, T:0.69
Consensus pattern (10 bp):
TATTCATTTT
Found at i:50911147 original size:47 final size:47
Alignment explanation
Indices: 50911094--50911187 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
50911084 TTATTGCTTT
*
50911094 GCGATCGTTCTATGTTGCCATTATCGGCGTTAGTTTCTACACTAATC
1 GCGATCGTTCTATGTTGCCATTATCGACGTTAGTTTCTACACTAATC
50911141 GCGATCGTTCTATGTTGCCATTATCGACGTTAGTTTCTACACTAATC
1 GCGATCGTTCTATGTTGCCATTATCGACGTTAGTTTCTACACTAATC
50911188 TAATCGAGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.38
Consensus pattern (47 bp):
GCGATCGTTCTATGTTGCCATTATCGACGTTAGTTTCTACACTAATC
Found at i:50911166 original size:25 final size:25
Alignment explanation
Indices: 50911094--50911166 Score: 59
Period size: 25 Copynumber: 3.0 Consensus size: 25
50911084 TTATTGCTTT
50911094 GCGATCGTTCTATGTTGCCATTATC
1 GCGATCGTTCTATGTTGCCATTATC
* *
50911119 G-G--CG-T-TA-GTTTCTACACTAATC
1 GCGATCGTTCTATGTTGC--CA-TTATC
50911141 GCGATCGTTCTATGTTGCCATTATC
1 GCGATCGTTCTATGTTGCCATTATC
50911166 G
1 G
50911167 ACGTTAGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 18
0.61 0.07 0.32
Matches are distributed among these distances:
19 4 0.11
20 2 0.06
21 3 0.09
22 7 0.20
23 1 0.03
24 1 0.03
25 8 0.23
26 3 0.09
27 2 0.06
28 4 0.11
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (25 bp):
GCGATCGTTCTATGTTGCCATTATC
Found at i:50912021 original size:12 final size:12
Alignment explanation
Indices: 50912004--50912028 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50911994 ACTTAATCAT
50912004 TTTAATATTAAA
1 TTTAATATTAAA
50912016 TTTAATATTAAA
1 TTTAATATTAAA
50912028 T
1 T
50912029 CTTATTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:50915835 original size:43 final size:43
Alignment explanation
Indices: 50915782--50915936 Score: 156
Period size: 42 Copynumber: 3.6 Consensus size: 43
50915772 GACAAGTACA
* *
50915782 ATGCCACTGTCCCAGACGTGGTCTTACATGTAATTCAATATCG
1 ATGCCACTGTCCCAGACATGGTCTTACACGTAATTCAATATCG
* * * **
50915825 ATGCCTCTGTCCCAGACAAGGTCTTATACG-AAAACAGATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACACGTAATTCA-ATATCG
* *
50915867 ATGCCGA-TGTTCCAGACATGGTCTTACACATAAATTTCAA-ATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGT-AA-TTCAATATCG
*
50915911 ATGCCAGTGTCCCAGACATGGTCTTA
1 ATGCCACTGTCCCAGACATGGTCTTA
50915937 TATGATAATT
Statistics
Matches: 90, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
42 30 0.33
43 30 0.33
44 28 0.31
45 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGTAATTCAATATCG
Found at i:50915947 original size:44 final size:43
Alignment explanation
Indices: 50915782--50915946 Score: 151
Period size: 43 Copynumber: 3.8 Consensus size: 43
50915772 GACAAGTACA
*
50915782 ATGCCACTGTCCCAGACGTGGTCTTACATG-TAATTCAATATCG
1 ATGCCACTGTCCCAGACATGGTCTTACATGATAATTCAA-ATCG
* * * * * *
50915825 ATGCCTCTGTCCCAGACAAGGTCTTATACGA-AA-ACAGATACG
1 ATGCCACTGTCCCAGACATGGTCTTACATGATAATTCAAAT-CG
* *
50915867 ATGCCGA-TGTTCCAGACATGGTCTTACA-CATAAATTTCAAATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGAT-AA-TTCAAATCG
* *
50915911 ATGCCAGTGTCCCAGACATGGTCTTATATGATAATT
1 ATGCCACTGTCCCAGACATGGTCTTACATGATAATT
50915947 TAGATCAATA
Statistics
Matches: 96, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
41 3 0.03
42 27 0.28
43 32 0.33
44 28 0.29
45 6 0.06
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGATAATTCAAATCG
Found at i:50935618 original size:85 final size:86
Alignment explanation
Indices: 50935511--50935670 Score: 216
Period size: 86 Copynumber: 1.9 Consensus size: 86
50935501 GACAAGTACA
* * * * *
50935511 ATGCCGATGTCCTAGACGTGGTCTTACATGT-AA-TTCAATATCAATGCCTCTTTCCCAGACAAG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATTTCAA-ATCAATGCCACTGTCCCAGACAAG
50935574 GTCTTATACGAAAACAGATATG
65 GTCTTATACGAAAACAGATATG
* * * *
50935596 ATGCCGATGTCCCAGACATGGTCTTACGCGTAAATTTCAAATCGATGCCAGTGTCCCAGACACGG
1 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATTTCAAATCAATGCCACTGTCCCAGACAAGG
50935661 TCTTATACGA
66 TCTTATACGA
50935671 TAATTTAGAT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 27 0.42
86 32 0.50
87 5 0.08
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (86 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGTAAATTTCAAATCAATGCCACTGTCCCAGACAAGG
TCTTATACGAAAACAGATATG
Found at i:50935676 original size:44 final size:45
Alignment explanation
Indices: 50935563--50935680 Score: 108
Period size: 44 Copynumber: 2.7 Consensus size: 45
50935553 AATGCCTCTT
*
50935563 TCCCAGACAAGGTCTTATACGA-AA--ACAGATATGATGCCGATG
1 TCCCAGACAAGGTCTTATACGATAATTTCAGATATGATGCCGATG
* **
50935605 TCCCAGACATGGTCTTACGCG-TAAATTTCA-A-ATCGATGCC-AGTG
1 TCCCAGACAAGGTCTTATACGAT-AATTTCAGATAT-GATGCCGA-TG
*
50935649 TCCCAGACACGGTCTTATACGATAATTT-AGAT
1 TCCCAGACAAGGTCTTATACGATAATTTCAGAT
50935681 CAATACCAAC
Statistics
Matches: 60, Mismatches: 7, Indels: 15
0.73 0.09 0.18
Matches are distributed among these distances:
42 18 0.30
43 6 0.10
44 33 0.55
45 3 0.05
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.26
Consensus pattern (45 bp):
TCCCAGACAAGGTCTTATACGATAATTTCAGATATGATGCCGATG
Found at i:50942179 original size:2 final size:2
Alignment explanation
Indices: 50942172--50942198 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
50942162 ATTATTTGTG
50942172 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
50942199 AGTTAAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50959313 original size:46 final size:46
Alignment explanation
Indices: 50959263--50959428 Score: 173
Period size: 46 Copynumber: 3.6 Consensus size: 46
50959253 TCCGAACTCG
50959263 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGGA-CTCA
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGGAGCTCA
** * *
50959309 TTGAGTTGAGTCCGAGTTCGAGAGATAT-AACTAG-GCA-TCC-GAGCTCA
1 TTGAGTTGAGTCCGAGTTC---ACTTATGGA-T-GCGAAGTCCGGAGCTCA
* *
50959356 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGGAGCTCA
50959402 TTGAGTTGAGTCCGAGTTCACTTATGG
1 TTGAGTTGAGTCCGAGTTCACTTATGG
50959429 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 9, Indels: 22
0.76 0.07 0.17
Matches are distributed among these distances:
43 1 0.01
44 7 0.07
45 3 0.03
46 54 0.54
47 26 0.26
48 1 0.01
49 7 0.07
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCGGAGCTCA
Found at i:50959409 original size:93 final size:93
Alignment explanation
Indices: 50959250--50959420 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
50959240 GGATGGTTGA
* * *
50959250 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGGACTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGGACTCATTGAGT
50959315 TGAGTCCGAGTTCGAGAGATATAACTAG
66 TGAGTCCGAGTTCGAGAGATATAACTAG
* *
50959343 GCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC-GAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGGA-CTCATTGAG
50959407 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
50959421 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGGACTCATTGAGT
TGAGTCCGAGTTCGAGAGATATAACTAG
Found at i:50965654 original size:113 final size:114
Alignment explanation
Indices: 50965373--50965662 Score: 289
Period size: 113 Copynumber: 2.5 Consensus size: 114
50965363 AACTATTTGA
* * * *** *
50965373 CTAGTTTTTCTATATATTTAGAAGATCCTTAGAGATCAA-ATTCCAATATTTATGTCCAAATATG
1 CTAGTTTTTCTATATATTTAGAGGATCCTTAGAGAT-AATATTCCTATATCTATGTTTGAAGA-G
* * * * *
50965437 TGTTGGATATGGACGTCGGATACATATATTTCAAAAAGAACAAAGGTTTTT
64 TGTCGGACATGGACATCGGATACAAATATTTCAAAAAGAACAAAGATTTTT
* * * * *
50965488 CTAAGTGTTCCTATATATTTTAAAGGATCCTTAGAAATAATATTCTTATATCTATGTTTGAAGA-
1 CT-AGTTTTTCTATATA-TTTAGAGGATCCTTAGAGATAATATTCCTATATCTATGTTTGAAGAG
* * * * *
50965552 TGTCGGACATGGATATCTGATACAAATATTT-TAAAAGAATAAATATTTTT
64 TGTCGGACATGGACATCGGATACAAATATTTCAAAAAGAACAAAGATTTTT
* * *
50965602 CTAGTTTTTTCTATATATTTAGAGGATCCTTAGGGATTATATTCCTATATCTATATTTGAA
1 CTAG-TTTTTCTATATATTTAGAGGATCCTTAGAGATAATATTCCTATATCTATGTTTGAA
50965663 TATATCAAAC
Statistics
Matches: 141, Mismatches: 30, Indels: 10
0.78 0.17 0.06
Matches are distributed among these distances:
113 40 0.28
114 27 0.19
115 27 0.19
116 14 0.10
117 33 0.23
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (114 bp):
CTAGTTTTTCTATATATTTAGAGGATCCTTAGAGATAATATTCCTATATCTATGTTTGAAGAGTG
TCGGACATGGACATCGGATACAAATATTTCAAAAAGAACAAAGATTTTT
Found at i:50965730 original size:113 final size:112
Alignment explanation
Indices: 50965456--50965731 Score: 252
Period size: 113 Copynumber: 2.4 Consensus size: 112
50965446 TGGACGTCGG
* *
50965456 ATACATATATTTCAAAAAGAACAAAGGTTTTTCTAAGTGTTCCTATATATTTTAAAGGATCCTTA
1 ATACAAATATTTCAAAAA-ATCAAAGGTTTTTCTAAGT-TT-CTATATATTTTAAAGGATCCTTA
* * * ** * * * **
50965521 GAAATAATATTCTTATATCTATGTTTGAAGATGTCGGACATGGATATCTG
63 GAAATAATATTCCTATATCTATATTTGAAGATATCAAACAAGGACAACAA
* ** *
50965571 ATACAAATATTTTAAAAGAAT-AAATATTTTTCT-AGTTTTTTCTATATA-TTTAGAGGATCCTT
1 ATACAAATATTTCAAAA-AATCAAAGGTTTTTCTAAG---TTTCTATATATTTTAAAGGATCCTT
** * *
50965633 AGGGATTATATTCCTATATCTATATTTGAATATATCAAACAAGGACAACAA
62 AGAAATAATATTCCTATATCTATATTTGAAGATATCAAACAAGGACAACAA
* *
50965684 ATACAGATATTTCAAAAAATCAAAGGTTTATCTAAGTTTACATATATA
1 ATACAAATATTTCAAAAAATCAAAGGTTTTTCTAAGTTT-C-TATATA
50965732 GATGATCCTT
Statistics
Matches: 128, Mismatches: 25, Indels: 18
0.75 0.15 0.11
Matches are distributed among these distances:
111 3 0.02
112 4 0.03
113 82 0.64
114 19 0.15
115 18 0.14
116 2 0.02
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (112 bp):
ATACAAATATTTCAAAAAATCAAAGGTTTTTCTAAGTTTCTATATATTTTAAAGGATCCTTAGAA
ATAATATTCCTATATCTATATTTGAAGATATCAAACAAGGACAACAA
Found at i:50977892 original size:35 final size:35
Alignment explanation
Indices: 50977817--50977947 Score: 129
Period size: 35 Copynumber: 3.7 Consensus size: 35
50977807 AATCTAACCA
* * * * *
50977817 AAACACACCAGATGCTCATAAGAGCCAATTCATCTG
1 AAACACACCA-ATGCTCATAAAAGCTAATCCCTCCG
* ** *
50977853 -AACACACCAATGCTCGTAATGGCTAATCCCTCCT
1 AAACACACCAATGCTCATAAAAGCTAATCCCTCCG
* *
50977887 AAACACACCAATGCTCATAAAAGCTAATCCTTTCG
1 AAACACACCAATGCTCATAAAAGCTAATCCCTCCG
* *
50977922 AAACACACCAGTGCTCATAAGAGCTA
1 AAACACACCAATGCTCATAAAAGCTA
50977948 GTCCAAACAA
Statistics
Matches: 78, Mismatches: 16, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
34 17 0.22
35 61 0.78
ACGTcount: A:0.37, C:0.30, G:0.12, T:0.21
Consensus pattern (35 bp):
AAACACACCAATGCTCATAAAAGCTAATCCCTCCG
Found at i:50977961 original size:35 final size:35
Alignment explanation
Indices: 50977815--50977967 Score: 110
Period size: 35 Copynumber: 4.4 Consensus size: 35
50977805 GCAATCTAAC
* * * *
50977815 CAAAACACACCAGATGCTCATAAGAGCCAATTC-AT
1 CAAAACACACCA-ATGCTCATAAAAGCTAATCCAAA
** * ** ***
50977850 CTGAACACACCAATGCTCGTAATGGCTAATCCCTC
1 CAAAACACACCAATGCTCATAAAAGCTAATCCAAA
* ***
50977885 CTAAACACACCAATGCTCATAAAAGCTAATCCTTT
1 CAAAACACACCAATGCTCATAAAAGCTAATCCAAA
* * * *
50977920 CGAAACACACCAGTGCTCATAAGAGCTAGTCCAAA
1 CAAAACACACCAATGCTCATAAAAGCTAATCCAAA
50977955 CAAAACACACCAA
1 CAAAACACACCAA
50977968 AACAGAAAGC
Statistics
Matches: 93, Mismatches: 24, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
34 15 0.16
35 78 0.84
ACGTcount: A:0.40, C:0.31, G:0.11, T:0.18
Consensus pattern (35 bp):
CAAAACACACCAATGCTCATAAAAGCTAATCCAAA
Found at i:50993088 original size:40 final size:40
Alignment explanation
Indices: 50993009--50993185 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
50992999 CGGATGATAA
* * * * *
50993009 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * *
50993049 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATAT
* *
50993089 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
50993129 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
50993169 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
50993186 ATACTTGGGT
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 101 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:50993147 original size:80 final size:80
Alignment explanation
Indices: 50993009--50993185 Score: 261
Period size: 80 Copynumber: 2.2 Consensus size: 80
50992999 CGGATGATAA
* * * *
50993009 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
50993074 TGCTAG-TGATTATAT
66 TGCTAGTTG-TTATAT
* *
50993089 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
50993154 TGCTAGTTGTTATAT
66 TGCTAGTTGTTATAT
50993169 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
50993186 ATACTTGGGT
Statistics
Matches: 89, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
78 1 0.01
79 13 0.15
80 73 0.82
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCTAGTTGTTATAT
Found at i:50993453 original size:22 final size:22
Alignment explanation
Indices: 50993413--50993454 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
50993403 GAATGTGCAT
*
50993413 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
50993435 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
50993455 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:51001078 original size:40 final size:40
Alignment explanation
Indices: 51000999--51001175 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
51000989 CGGATGATAA
* * * *
51000999 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
51001039 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
51001079 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
51001119 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
51001159 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
51001176 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.12
40 102 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:51001443 original size:22 final size:22
Alignment explanation
Indices: 51001403--51001444 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
51001393 GAATGTGCAT
*
51001403 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
51001425 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
51001445 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:51005407 original size:7 final size:7
Alignment explanation
Indices: 51005395--51005433 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
51005385 GAATTAGTAT
51005395 TTTATTA
1 TTTATTA
51005402 TTTATTA
1 TTTATTA
51005409 TTTATTA
1 TTTATTA
51005416 TTTATTA
1 TTTATTA
51005423 TTTATTA
1 TTTATTA
51005430 TTTA
1 TTTA
51005434 ATGTTATTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTATTA
Found at i:51007261 original size:47 final size:45
Alignment explanation
Indices: 51007104--51007414 Score: 245
Period size: 47 Copynumber: 6.6 Consensus size: 45
51007094 TGATTTGTGC
* * *
51007104 GCCAGTGTAAGACATGTCTAGGACATGCTTCGCCCATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCG-CCATATGATGAGA
* * * *
51007150 GCCAGTGTAAGACTATGTCTGGGATATGGCATCGACATCCA-GACGAGG
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGCCAT--ATGATGAGA
* *
51007198 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GCCATATGATGAGA
* * * *
51007244 GCCAATGTAAAACCATGTCTGGGACATGGCATCGGCACAGA-GATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC-GC-CATATGATGAGA
* * *
51007292 GCTAGAGTAAGACATGTCTGGGACATACATCGGCC-T-TGATAGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GCCATATGAT-GAG--A
* * *
51007339 GCTAGTGTAAGACGTGTCTGGGACATGCATCAGCACACATAT-ATGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G--C-CATATGATGAGA
51007387 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
51007415 GCATTGGCAA
Statistics
Matches: 212, Mismatches: 34, Indels: 35
0.75 0.12 0.12
Matches are distributed among these distances:
44 3 0.01
45 5 0.02
46 38 0.18
47 87 0.41
48 53 0.25
49 19 0.09
50 3 0.01
51 3 0.01
52 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGCCATATGATGAGA
Found at i:51007273 original size:94 final size:94
Alignment explanation
Indices: 51007107--51007323 Score: 294
Period size: 94 Copynumber: 2.3 Consensus size: 94
51007097 TTTGTGCGCC
* * * * *
51007107 AGTGTAAGACATGTCTAGGACATGCTTCGCCCATATTATGAGAGCCAGTGTAAGACTATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGCCCATATTATGAGAGCCAATGTAAAACCATGTCTGG
*
51007172 GATATGGCATCGACATC-CAGACGAGGGCT
66 GACATGGCATCGACA-CACAGACGAGGGCT
51007201 AGTGTAAGACATGTCTGGGACATGCATCAG-CCATATTATGAGAGCCAATGTAAAACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCCATATTATGAGAGCCAATGTAAAACCATGTCTG
* * * *
51007265 GGACATGGCATCGGCACAGAGATGAGTGCT
65 GGACATGGCATCGACACACAGACGAGGGCT
* *
51007295 AGAGTAAGACATGTCTGGGACATACATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
51007324 GCCTTGATAG
Statistics
Matches: 109, Mismatches: 12, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
93 2 0.02
94 106 0.97
95 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCCATATTATGAGAGCCAATGTAAAACCATGTCTGG
GACATGGCATCGACACACAGACGAGGGCT
Found at i:51007357 original size:94 final size:93
Alignment explanation
Indices: 51007110--51007377 Score: 285
Period size: 94 Copynumber: 2.9 Consensus size: 93
51007100 GTGCGCCAGT
* * *
51007110 GTAAGACATGTCTAGGACATGCTTC-GCCCATATTATGAGAGCCAGTGTAAGACTATGTCTGGGA
1 GTAAGACATGTCTGGGACATACATCAG-CCATATTATGAGAGCCAGTGTAAGAC-ATGTCTGGGA
* * *
51007174 TATGGCATCGACATC-CAGACGAGGGCTAGT
64 CATGGCATCGGCA-CACAGACGAGGGCTAGA
* * *
51007204 GTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAATGTAAAACCATGTCTGGGAC
1 GTAAGACATGTCTGGGACATACATCAGCCATATTATGAGAGCCAGTGTAAGA-CATGTCTGGGAC
* * *
51007269 ATGGCATCGGCACAGAGATGAGTGCTAGA
65 ATGGCATCGGCACACAGACGAGGGCTAGA
* * * *
51007298 GTAAGACATGTCTGGGACATACATCGGCC-T-TGATAGAGATAGCTAGTGTAAGACGTGTCTGGG
1 GTAAGACATGTCTGGGACATACATCAGCCATATTAT-GAG--AGCCAGTGTAAGACATGTCTGGG
*
51007361 ACAT-GCATCAGCACACA
63 ACATGGCATCGGCACACA
51007378 TATATGAAAG
Statistics
Matches: 149, Mismatches: 19, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
92 3 0.02
93 16 0.11
94 118 0.79
95 12 0.08
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (93 bp):
GTAAGACATGTCTGGGACATACATCAGCCATATTATGAGAGCCAGTGTAAGACATGTCTGGGACA
TGGCATCGGCACACAGACGAGGGCTAGA
Found at i:51009657 original size:40 final size:40
Alignment explanation
Indices: 51009558--51009736 Score: 171
Period size: 40 Copynumber: 4.5 Consensus size: 40
51009548 CGAATGGTGT
* * * *
51009558 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * * *
51009599 CCGGG-TCAACTCCTGAAGGTATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
51009639 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
51009679 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
51009719 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
51009737 ACAATCGAGC
Statistics
Matches: 110, Mismatches: 26, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
40 87 0.79
41 23 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:51009705 original size:80 final size:80
Alignment explanation
Indices: 51009558--51009750 Score: 199
Period size: 80 Copynumber: 2.4 Consensus size: 80
51009548 CGAATGGTGT
* * * * * *
51009558 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCTGAAGGTATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
51009623 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * * *
51009639 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* *
51009703 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * *
51009719 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
51009751 CGCTATATCC
Statistics
Matches: 92, Mismatches: 19, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
79 1 0.01
80 66 0.72
81 25 0.27
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:51009757 original size:40 final size:40
Alignment explanation
Indices: 51009679--51009762 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
51009669 GTTATTAAAT
* * *
51009679 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
51009719 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
51009759 CCGG
1 CCGG
51009763 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:51016114 original size:178 final size:178
Alignment explanation
Indices: 51015854--51016228 Score: 642
Period size: 178 Copynumber: 2.1 Consensus size: 178
51015844 TTACTTAATT
*
51015854 AATTTAATCACAATTTACTTAATCTTATTTATCTACTAATAAAAAAAAGTGGATTCCATCATGAA
1 AATTTAAT-A-AAATTACTTAATCTTATTTATCTACTAATAAAAAAAAGTGGATTCCATCATGAA
*
51015919 ATTCCACTATCCACTATTAACAATTGCTCTTTTGCTCTATTAGCTAATTAAAAATCTATAGCAAT
64 ATTCCACTATCCACTATTAACAATTGCTCTTTTGCTCTATTAGCTAATTAAAAATCTAAAGCAAT
51015984 TAAACTTTTACCATTTTTACGATTTAATCCTTATACTTTAATTAACTATC
129 TAAACTTTTACCATTTTTACGATTTAATCCTTATACTTTAATTAACTATC
* * *
51016034 AATTTAATAAAATTACTTAATTTTATTTATCTACTAATCAAACAAAGTGGATTCCATCATGAAAT
1 AATTTAATAAAATTACTTAATCTTATTTATCTACTAATAAAAAAAAGTGGATTCCATCATGAAAT
* *
51016099 TCCACTATCCACTATTAACAATTGCTCTTTTGTTCTATTAGCTAATTAAAAATCTAAAGCGATTA
66 TCCACTATCCACTATTAACAATTGCTCTTTTGCTCTATTAGCTAATTAAAAATCTAAAGCAATTA
* *
51016164 AACTTTTACCATTTTTATGATTTAATCCTTATATTTTAATTAACTATC
131 AACTTTTACCATTTTTACGATTTAATCCTTATACTTTAATTAACTATC
*
51016212 AATTTAAAAAAATTACT
1 AATTTAATAAAATTACT
51016229 AGACCGAAAT
Statistics
Matches: 185, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
178 176 0.95
179 1 0.01
180 8 0.04
ACGTcount: A:0.38, C:0.16, G:0.05, T:0.41
Consensus pattern (178 bp):
AATTTAATAAAATTACTTAATCTTATTTATCTACTAATAAAAAAAAGTGGATTCCATCATGAAAT
TCCACTATCCACTATTAACAATTGCTCTTTTGCTCTATTAGCTAATTAAAAATCTAAAGCAATTA
AACTTTTACCATTTTTACGATTTAATCCTTATACTTTAATTAACTATC
Found at i:51016466 original size:35 final size:36
Alignment explanation
Indices: 51016390--51016466 Score: 138
Period size: 36 Copynumber: 2.2 Consensus size: 36
51016380 TGTCGTGGTA
*
51016390 GTAAGCCTATAGGAGCATAGAGTATGAATATGATTT
1 GTAAGGCTATAGGAGCATAGAGTATGAATATGATTT
51016426 GTAAGGCTATAGGAGCATAGAGTATGAAT-TGATTT
1 GTAAGGCTATAGGAGCATAGAGTATGAATATGATTT
51016461 GTAAGG
1 GTAAGG
51016467 GAAATAAGGT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
35 12 0.30
36 28 0.70
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (36 bp):
GTAAGGCTATAGGAGCATAGAGTATGAATATGATTT
Found at i:51028377 original size:30 final size:30
Alignment explanation
Indices: 51028341--51028441 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
51028331 GACAAGATTG
* * *
51028341 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
51028371 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
51028399 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
51028428 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
51028442 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:51028453 original size:29 final size:28
Alignment explanation
Indices: 51028370--51028445 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
51028360 AAAATTGTAC
* *
51028370 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
51028398 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
51028427 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
51028446 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:51036265 original size:30 final size:30
Alignment explanation
Indices: 51036229--51036329 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
51036219 GACAAGATTG
* * *
51036229 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
51036259 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
51036287 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
51036316 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
51036330 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:51036341 original size:29 final size:28
Alignment explanation
Indices: 51036258--51036333 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
51036248 AAAATTGTAC
* *
51036258 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
51036286 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
51036315 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
51036334 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:51039374 original size:42 final size:40
Alignment explanation
Indices: 51039314--51039480 Score: 129
Period size: 40 Copynumber: 4.1 Consensus size: 40
51039304 ATGCTGCAAT
* * *
51039314 AGGTAAAGCAGTACCGGTGTTTTTGATAAAAAAACGCAACAAA
1 AGGT-AAGCAATAGCGGTGTTTGTGAT--AAAAACGCAACAAA
**
51039357 AGGTAAGCAATAGCGGTGTTTGTGATAAAAACGCCGCAAA
1 AGGTAAGCAATAGCGGTGTTTGTGATAAAAACGCAACAAA
* **** * **
51039397 AGATAAGCAATAGCTACATTTAT-AGTAAAAACGCTGCAAA
1 AGGTAAGCAATAGCGGTGTTTGTGA-TAAAAACGCAACAAA
*** * *
51039437 AGGTAAGCAATAGCGACATTTGTGTTAAAAACGCTACAAA
1 AGGTAAGCAATAGCGGTGTTTGTGATAAAAACGCAACAAA
51039477 AGGT
1 AGGT
51039481 TTTTTACTTT
Statistics
Matches: 105, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 81 0.77
42 19 0.18
43 4 0.04
ACGTcount: A:0.43, C:0.14, G:0.22, T:0.22
Consensus pattern (40 bp):
AGGTAAGCAATAGCGGTGTTTGTGATAAAAACGCAACAAA
Found at i:51039395 original size:43 final size:39
Alignment explanation
Indices: 51039309--51039410 Score: 96
Period size: 42 Copynumber: 2.5 Consensus size: 39
51039299 GGAAAATGCT
* * * *
51039309 GCAATAGGTAAAGCAGTACCGGTGTTTTTGATAAAAAAAC
1 GCAAAAGGT-AAGCAATAGCGGTGTTTGTGATAAAAAAAC
**
51039349 GCAACAAAAGGTAAGCAATAGCGGTGTTTGTGATAAAAACGCC
1 G---CAAAAGGTAAGCAATAGCGGTGTTTGTGATAAAAA-AAC
*
51039392 GCAAAAGATAAGCAATAGC
1 GCAAAAGGTAAGCAATAGC
51039411 TACATTTATA
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
40 18 0.35
42 24 0.47
43 9 0.18
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.20
Consensus pattern (39 bp):
GCAAAAGGTAAGCAATAGCGGTGTTTGTGATAAAAAAAC
Found at i:51039398 original size:40 final size:40
Alignment explanation
Indices: 51039343--51039480 Score: 161
Period size: 40 Copynumber: 3.5 Consensus size: 40
51039333 TTTTTGATAA
** ***
51039343 AAAAACGCAACAAAAGGTAAGCAATAGCGGTGTTTGTGAT
1 AAAAACGCTGCAAAAGGTAAGCAATAGCGACATTTGTGAT
* * * *
51039383 AAAAACGCCGCAAAAGATAAGCAATAGCTACATTTAT-AGT
1 AAAAACGCTGCAAAAGGTAAGCAATAGCGACATTTGTGA-T
*
51039423 AAAAACGCTGCAAAAGGTAAGCAATAGCGACATTTGTGTT
1 AAAAACGCTGCAAAAGGTAAGCAATAGCGACATTTGTGAT
*
51039463 AAAAACGCTACAAAAGGT
1 AAAAACGCTGCAAAAGGT
51039481 TTTTTACTTT
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 81 0.99
ACGTcount: A:0.45, C:0.15, G:0.20, T:0.20
Consensus pattern (40 bp):
AAAAACGCTGCAAAAGGTAAGCAATAGCGACATTTGTGAT
Found at i:51039646 original size:46 final size:46
Alignment explanation
Indices: 51039549--51039700 Score: 144
Period size: 46 Copynumber: 3.2 Consensus size: 46
51039539 ATACGAATTA
* * ***
51039549 TTTTCTTTCTCGATATTTTCTTTGCTTGAAACCTCAAAATCATTTCCC
1 TTTTCTTTCTCGA-CTTTT-TTTGCTTGAAACCACAAAATCCCATCCC
51039597 TTTTCTTTCTCGGACTTTTTTTGCTTGAAACCAC-AAATCCCATCCC
1 TTTTCTTTCTC-GACTTTTTTTGCTTGAAACCACAAAATCCCATCCC
* * * * *
51039643 TTTTCTTTCTCAGTCTTTTTGTTGCTCGAAAACCCCAAAATCCCGTCCT
1 TTTTCTTTCTC-GACTTTTT-TTGCTTG-AAACCACAAAATCCCATCCC
51039692 TTATTCTTT
1 TT-TTCTTT
51039701 TATTTTAGCT
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
46 27 0.31
47 20 0.23
48 21 0.24
49 14 0.16
50 6 0.07
ACGTcount: A:0.19, C:0.28, G:0.08, T:0.45
Consensus pattern (46 bp):
TTTTCTTTCTCGACTTTTTTTGCTTGAAACCACAAAATCCCATCCC
Found at i:51042328 original size:41 final size:41
Alignment explanation
Indices: 51042283--51042364 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
51042273 TGGAGGTAAA
* *
51042283 TCCCCAACGAACTTGGACTCTCCCCATAAAGATTCTGAAAT
1 TCCCCAACGAACCTGAACTCTCCCCATAAAGATTCTGAAAT
* * *
51042324 TCCCCAATGGACCTGAACTCTTCCCATAAAGATTCTGAAAT
1 TCCCCAACGAACCTGAACTCTCCCCATAAAGATTCTGAAAT
51042365 AAATTGACCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (41 bp):
TCCCCAACGAACCTGAACTCTCCCCATAAAGATTCTGAAAT
Found at i:51042329 original size:21 final size:22
Alignment explanation
Indices: 51042301--51042364 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 22
51042291 GAACTTGGAC
51042301 TCTCCCCATAAAGATTCTGAAA
1 TCTCCCCATAAAGATTCTGAAA
** * *
51042323 T-TCCCCA-ATGGA-CCTGAAC
1 TCTCCCCATAAAGATTCTGAAA
*
51042342 TCTTCCCATAAAGATTCTGAAA
1 TCTCCCCATAAAGATTCTGAAA
51042364 T
1 T
51042365 AAATTGACCA
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
19 6 0.20
20 8 0.27
21 9 0.30
22 7 0.23
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (22 bp):
TCTCCCCATAAAGATTCTGAAA
Found at i:51044203 original size:48 final size:48
Alignment explanation
Indices: 51043992--51044220 Score: 166
Period size: 48 Copynumber: 4.7 Consensus size: 48
51043982 GTATAATACG
* * * * * *
51043992 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCATCCATCAAGT--C
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTAT-ATGTGCC
* * *
51044039 GATGCCATGTCCCAG-CTATAGTCTTACACTGACTA--T-TAAAATTGAGGCC
1 GATGCCATGTCCCAGAC-ATGGTCTTACACTGAC-ACCTCT-ATA-TG-TGCC
* * * * *
51044088 GACGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCTATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-CTC-TATATGTGCC
* *
51044138 GATGCTATGTCCTAGACATGGTCTTACACTGACACCTCTATATGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATATGTGCC
* *
51044186 GATGCCATGTCCCAGACATGGTCGTATACTGACAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACAC
51044221 ATCTCGTAGC
Statistics
Matches: 140, Mismatches: 27, Indels: 29
0.71 0.14 0.15
Matches are distributed among these distances:
45 1 0.01
46 4 0.03
47 28 0.20
48 40 0.29
49 30 0.21
50 33 0.24
51 2 0.01
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATATGTGCC
Found at i:51044359 original size:48 final size:47
Alignment explanation
Indices: 51043992--51044402 Score: 212
Period size: 46 Copynumber: 8.7 Consensus size: 47
51043982 GTATAATACG
* *
51043992 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCATC-CATCAA-GTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCTC-TCAATGCC
* * * **
51044039 GATGCCATGTCCCAG-CTATAGTCTTACACTGACTAT-T-AAAATTGAGGCC
1 GATGCCATGTCCCAGAC-ATGGTCTTACACTGGCTCTCTCTCAA-T---GCC
* * * *
51044088 GACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--C-TCTCAATGCC
* * * *
51044138 GATGCTATGTCCTAGACATGGTCTTACACTGACAC-CTCT-ATATGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTCTCA-A--TGCC
* * * *
51044186 GATGCCATGTCCCAGACATGGTCGTATACTGACACATCTCGT--A-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCTC-TCAATGCC
* * * * *
51044232 AATG-CATGTCTCAAACAT-GTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-C-TCTCAATGCC
* * * *
51044278 GATG-CATGTCCCAAACAT-GTTTTACACTAGCTCTCGTCTCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-TCTCAATGCC
* *
51044324 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTC-AT-AATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTCTCAA--T-GCC
* *
51044372 GATG-CATGTCCCAAACAT-ATCTTACACTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC
51044403 ACACAAATAA
Statistics
Matches: 283, Mismatches: 51, Indels: 61
0.72 0.13 0.15
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 14 0.05
45 15 0.05
46 67 0.24
47 56 0.20
48 56 0.20
49 32 0.11
50 36 0.13
51 1 0.00
53 2 0.01
54 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTCTCAATGCC
Found at i:51053207 original size:24 final size:24
Alignment explanation
Indices: 51053178--51053235 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
51053168 ATAAATAACG
51053178 TATAAAAATATAATAAAAATATTT-T
1 TATAAAAATA-AAT-AAAATATTTCT
* *
51053203 T-TAAAATTAAATATAATATTTCT
1 TATAAAAATAAATAAAATATTTCT
51053226 TATAAAAATA
1 TATAAAAATA
51053236 GATTATTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 8 0.29
23 5 0.18
24 14 0.50
25 1 0.04
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
TATAAAAATAAATAAAATATTTCT
Found at i:51055982 original size:26 final size:26
Alignment explanation
Indices: 51055946--51056029 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
51055936 CATGAAATTC
51055946 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
51055972 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
51055998 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
51056024 TTATCA
1 TTATCA
51056030 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:51057372 original size:13 final size:13
Alignment explanation
Indices: 51057354--51057379 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51057344 ATTGATTTGC
51057354 TTCAAATCAGTGT
1 TTCAAATCAGTGT
51057367 TTCAAATCAGTGT
1 TTCAAATCAGTGT
51057380 AAGTGAGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTCAAATCAGTGT
Found at i:51066065 original size:23 final size:23
Alignment explanation
Indices: 51066007--51066094 Score: 88
Period size: 23 Copynumber: 3.8 Consensus size: 23
51065997 TTATTAACAT
* *
51066007 TGTTCGTGAACATATTCAATTATA
1 TGTTCGTGAACATGTTCGATTA-A
* *
51066031 TGTTCATGAACATGTTCGTTTAA
1 TGTTCGTGAACATGTTCGATTAA
*
51066054 TGTTCGTAAACATGTTCGATTAA
1 TGTTCGTGAACATGTTCGATTAA
**
51066077 -GTTAAATGAACATGTTCG
1 TGTT-CGTGAACATGTTCG
51066095 TGAATATTAA
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
22 3 0.06
23 32 0.60
24 18 0.34
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (23 bp):
TGTTCGTGAACATGTTCGATTAA
Found at i:51066066 original size:47 final size:46
Alignment explanation
Indices: 51066007--51066095 Score: 117
Period size: 47 Copynumber: 1.9 Consensus size: 46
51065997 TTATTAACAT
* *
51066007 TGTTCGTGAACATATTCAATTATATGTT-CATGAACATGTTCGTTTAA
1 TGTTCGTAAACATATTCAATTA-A-GTTAAATGAACATGTTCGTTTAA
* *
51066054 TGTTCGTAAACATGTTCGATTAAGTTAAATGAACATGTTCGT
1 TGTTCGTAAACATATTCAATTAAGTTAAATGAACATGTTCGT
51066096 GAATATTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 3 0.08
46 15 0.41
47 19 0.51
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.40
Consensus pattern (46 bp):
TGTTCGTAAACATATTCAATTAAGTTAAATGAACATGTTCGTTTAA
Found at i:51073292 original size:20 final size:20
Alignment explanation
Indices: 51073269--51073313 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
51073259 TTAAAAAAAT
51073269 AAAAAAAT-TCAAAAAATCTA
1 AAAAAAATAT-AAAAAATCTA
* *
51073289 AAAAATATATAAAAAATTTA
1 AAAAAAATATAAAAAATCTA
51073309 AAAAA
1 AAAAA
51073314 TTACAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (20 bp):
AAAAAAATATAAAAAATCTA
Found at i:51073310 original size:9 final size:9
Alignment explanation
Indices: 51073258--51073315 Score: 62
Period size: 9 Copynumber: 6.2 Consensus size: 9
51073248 AAATATATTT
51073258 TTTAAAAAA
1 TTTAAAAAA
* *
51073267 ATAAAAAAA
1 TTTAAAAAA
*
51073276 TTCAAAAAA
1 TTTAAAAAA
*
51073285 TCTAAAAAA
1 TTTAAAAAA
51073294 TATATAAAAAA
1 T-T-TAAAAAA
51073305 TTTAAAAAA
1 TTTAAAAAA
51073314 TT
1 TT
51073316 ACAAATTTTC
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
9 31 0.77
10 1 0.03
11 8 0.20
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:51073779 original size:37 final size:37
Alignment explanation
Indices: 51073738--51073808 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
51073728 AAATTATTAA
*
51073738 AAATATTTTTTTATATTTTAAATAAA-CTATATAATAT
1 AAATATATTTTTATATTTTAAATAAATCTA-ATAATAT
*
51073775 AAATATATTTTTATATTTTTAATAAATCTAATAA
1 AAATATATTTTTATATTTTAAATAAATCTAATAA
51073809 AACAATTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 28 0.90
38 3 0.10
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (37 bp):
AAATATATTTTTATATTTTAAATAAATCTAATAATAT
Found at i:51080492 original size:37 final size:37
Alignment explanation
Indices: 51080433--51080539 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
51080423 AGCTTAGACG
* * *
51080433 AAATCTCCACACGAAGTTATCGGGTCTCACCCGGAAA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAA
*
51080470 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAA
*
51080507 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
51080540 AAATATATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAA
Found at i:51080657 original size:48 final size:48
Alignment explanation
Indices: 51080586--51081113 Score: 876
Period size: 48 Copynumber: 11.0 Consensus size: 48
51080576 TGTTACAACG
* * * *
51080586 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
51080634 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
51080682 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
51080730 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
51080778 TTCACATTAGCTATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
51080826 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
51080874 TTCACATTAGTCATTCGGCTTTACCACATATACATATTACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
51080922 TTCATATTAGCTATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
51080970 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
51081018 TTCACATTGGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
**
51081066 TTCACATTAGCCGCTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
51081114 ACATATCACA
Statistics
Matches: 447, Mismatches: 33, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 447 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:51081115 original size:17 final size:17
Alignment explanation
Indices: 51081093--51081130 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
51081083 GCTTTACCAC
51081093 ATATACATATCACACAT
1 ATATACATATCACACAT
51081110 ATATACATATCACACAT
1 ATATACATATCACACAT
51081127 ATAT
1 ATAT
51081131 TTCACATTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (17 bp):
ATATACATATCACACAT
Found at i:51081125 original size:65 final size:65
Alignment explanation
Indices: 51081045--51081178 Score: 259
Period size: 65 Copynumber: 2.1 Consensus size: 65
51081035 GCTTTACCAC
*
51081045 ATATACATATCACACATATATTTCACATTAGCCGCTCGGCTTTACCACATATACATATCACACAT
1 ATATACATATCACACATATATTTCACATTAGCCGCTCAGCTTTACCACATATACATATCACACAT
51081110 ATATACATATCACACATATATTTCACATTAGCCGCTCAGCTTTACCACATATACATATCACACAT
1 ATATACATATCACACATATATTTCACATTAGCCGCTCAGCTTTACCACATATACATATCACACAT
51081175 ATAT
1 ATAT
51081179 TTCATATTAG
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
65 68 1.00
ACGTcount: A:0.37, C:0.27, G:0.05, T:0.31
Consensus pattern (65 bp):
ATATACATATCACACATATATTTCACATTAGCCGCTCAGCTTTACCACATATACATATCACACAT
Found at i:51081152 original size:113 final size:113
Alignment explanation
Indices: 51080997--51081226 Score: 363
Period size: 113 Copynumber: 2.0 Consensus size: 113
51080987 GCTTTACCAC
* * * *
51080997 ATATACATATCTCATACATATTTCACATTGGCCCTTCGGCTTTACCACATATACATATCACACAT
1 ATATACATATCACACACATATTTCACATTAGCCCTTCAGCTTTACCACATATACATATCACACAT
*
51081062 ATATTTCACATTAGCCGCTCGGCTTTACCACATATACATATCACACAT
66 ATATTTCACATTAGCCACTCGGCTTTACCACATATACATATCACACAT
*
51081110 ATATACATATCACACATATATTTCACATTAGCCGC-TCAGCTTTACCACATATACATATCACACA
1 ATATACATATCACACACATATTTCACATTAGCC-CTTCAGCTTTACCACATATACATATCACACA
* * *
51081174 TATATTTCATATTAGCTATTCGGCTTTACCACATATACATATCACACAT
65 TATATTTCACATTAGCCACTCGGCTTTACCACATATACATATCACACAT
51081223 ATAT
1 ATAT
51081227 TTATTTATCT
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
113 106 0.99
114 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.06, T:0.33
Consensus pattern (113 bp):
ATATACATATCACACACATATTTCACATTAGCCCTTCAGCTTTACCACATATACATATCACACAT
ATATTTCACATTAGCCACTCGGCTTTACCACATATACATATCACACAT
Found at i:51081165 original size:48 final size:48
Alignment explanation
Indices: 51081110--51081228 Score: 193
Period size: 48 Copynumber: 2.5 Consensus size: 48
51081100 TATCACACAT
*
51081110 ATATACATATCACACATATATTTCACATTAGCCGCTCAGCTTTACCAC
1 ATATACATATCACACATATATTTCACATTAGCCACTCAGCTTTACCAC
* * * *
51081158 ATATACATATCACACATATATTTCATATTAGCTATTCGGCTTTACCAC
1 ATATACATATCACACATATATTTCACATTAGCCACTCAGCTTTACCAC
51081206 ATATACATATCACACATATATTT
1 ATATACATATCACACATATATTT
51081229 ATTTATCTTG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 66 1.00
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.35
Consensus pattern (48 bp):
ATATACATATCACACATATATTTCACATTAGCCACTCAGCTTTACCAC
Found at i:51096319 original size:38 final size:39
Alignment explanation
Indices: 51096263--51096370 Score: 123
Period size: 38 Copynumber: 2.8 Consensus size: 39
51096253 TGCGNACTGT
* *
51096263 GCACAAATGCCTTCGGGTCTTAGCCCGGA-AGA-ATACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
* *
51096301 GCACGAATGCCTTCGGGTCTTAG-CCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
*
51096340 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
51096371 TAATTTCCAG
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
37 5 0.08
38 26 0.43
39 22 0.37
40 7 0.12
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAGACACTA
Found at i:51096388 original size:40 final size:40
Alignment explanation
Indices: 51096263--51096411 Score: 119
Period size: 40 Copynumber: 3.8 Consensus size: 40
51096253 TGCGNACTGT
* * * *
51096263 GCACAAATGCCTTCGGGTCTTAGCCCGGA-AGAA-TACTC-
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAACCAC-CA
* * *
51096301 GCACGAA-TGCCTTCGGGTCTT-AGCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAACCCGGATATAACCACCA
***
51096340 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAACCACCA
* * * *
51096380 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAACCCGGATAT
51096412 CATTCAATTT
Statistics
Matches: 89, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
37 5 0.06
38 22 0.25
39 22 0.25
40 40 0.45
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGATATAACCACCA
Found at i:51104263 original size:40 final size:40
Alignment explanation
Indices: 51104218--51104384 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
51104208 CGGAATATAA
*
51104218 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
51104258 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
51104298 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
51104338 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
51104377 CCGGATAT
1 CCGGATAT
51104385 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.87
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51104368 original size:80 final size:79
Alignment explanation
Indices: 51104234--51104384 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
51104224 ATAACCATGT
*
51104234 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
51104299 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
51104314 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
51104377 CCGGATAT
64 CCGGATAT
51104385 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:51112626 original size:20 final size:19
Alignment explanation
Indices: 51112578--51112631 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
51112568 AAGCCAATTT
51112578 TGGGCCGTGTGAG-CCACAC
1 TGGG-CGTGTGAGCCCACAC
* *
51112597 -GGGTGAGTGAGCCCACAC
1 TGGGCGTGTGAGCCCACAC
51112615 ATGGGCGTGTGAGCCCA
1 -TGGGCGTGTGAGCCCA
51112632 TTTTTCTGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
17 6 0.21
18 9 0.32
20 13 0.46
ACGTcount: A:0.19, C:0.28, G:0.39, T:0.15
Consensus pattern (19 bp):
TGGGCGTGTGAGCCCACAC
Found at i:51115699 original size:23 final size:23
Alignment explanation
Indices: 51115669--51115713 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
51115659 AGAACTTTTA
*
51115669 ATCAGGAAACTCACAAATAGCCT
1 ATCAGGAAACTCACAAAGAGCCT
*
51115692 ATCAGGAAGCTCACAAAGAGCC
1 ATCAGGAAACTCACAAAGAGCC
51115714 ATGTAATAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.42, C:0.27, G:0.18, T:0.13
Consensus pattern (23 bp):
ATCAGGAAACTCACAAAGAGCCT
Found at i:51116317 original size:21 final size:21
Alignment explanation
Indices: 51116291--51116336 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
51116281 TATACGAGTA
*
51116291 AATTTA-ACATCAATTTAATAC
1 AATTTATAC-TCAATTCAATAC
*
51116312 AATTTATACTCAATTCAATCC
1 AATTTATACTCAATTCAATAC
51116333 AATT
1 AATT
51116337 CACATTTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.39
Consensus pattern (21 bp):
AATTTATACTCAATTCAATAC
Found at i:51121470 original size:46 final size:46
Alignment explanation
Indices: 51121356--51121477 Score: 156
Period size: 48 Copynumber: 2.6 Consensus size: 46
51121346 TGATATGTGT
* * *
51121356 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACA--TAA
* * *
51121404 GTTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGACA-AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACATA-A
51121450 GCTAGTGTAAGACATGTCTGGGACATGC
1 GCTAGTGTAAGACATGTCTGGGACATGC
51121478 GTCAGCTTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
45 1 0.02
46 28 0.42
48 37 0.56
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACATAA
Found at i:51123247 original size:39 final size:39
Alignment explanation
Indices: 51123129--51123311 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
51123119 TCGTTCAAAC
* * ** * **
51123129 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
51123169 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
51123209 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
51123248 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
*
51123287 GCCTTCGGGCTTAGCCCGAATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
51123312 CTCGAACATT
Statistics
Matches: 125, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 87 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:51126114 original size:30 final size:30
Alignment explanation
Indices: 51126078--51126145 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
51126068 TGATAGGTTT
51126078 TAAATATTTATAATTAATCATTCTTGAAAC
1 TAAATATTTATAATTAATCATTCTTGAAAC
51126108 TAAATATTTATAATTAATCATTCTTGAAAC
1 TAAATATTTATAATTAATCATTCTTGAAAC
*
51126138 TAACTATT
1 TAAATATT
51126146 ATCGTGATGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.44
Consensus pattern (30 bp):
TAAATATTTATAATTAATCATTCTTGAAAC
Found at i:51141722 original size:46 final size:48
Alignment explanation
Indices: 51141651--51141817 Score: 175
Period size: 46 Copynumber: 3.6 Consensus size: 48
51141641 TATGTGTGCT
*
51141651 AGTGTAAGACATGTTTGGGACATGCATCAGCCAC-AG-CA-TGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACATTGA-AGCC
* * * * * *
51141697 AGTGTAAGACATGTCTAGGATATGCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACATTGAAGCC
* * *
51141745 AGTGTAAGACATGTCTGGGACATGCATCAG-CATTGAGACA-AG-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCA-CGAGACATTGAAGCC
*
51141791 AATGTAAGACATGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
51141818 GGATCATAAA
Statistics
Matches: 100, Mismatches: 17, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 58 0.58
47 3 0.03
48 37 0.37
49 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACGAGACATTGAAGCC
Found at i:51142182 original size:11 final size:11
Alignment explanation
Indices: 51142163--51142210 Score: 87
Period size: 11 Copynumber: 4.4 Consensus size: 11
51142153 ACCAAGAGTC
*
51142163 AAAAGGAGCCA
1 AAAACGAGCCA
51142174 AAAACGAGCCA
1 AAAACGAGCCA
51142185 AAAACGAGCCA
1 AAAACGAGCCA
51142196 AAAACGAGCCA
1 AAAACGAGCCA
51142207 AAAA
1 AAAA
51142211 GGGACAAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 36 1.00
ACGTcount: A:0.58, C:0.23, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAACGAGCCA
Found at i:51146468 original size:161 final size:162
Alignment explanation
Indices: 51146181--51146505 Score: 544
Period size: 161 Copynumber: 2.0 Consensus size: 162
51146171 CTTCTCAGGA
* *
51146181 GGCAACCTGAGCACTAACATTATTGATTTCTTTAAATTCTGATATCTAACTCCTAACCTACTAAT
1 GGCAACCCGAGCACTAACATTATTGATTTCTTTAAATTATGATATCTAACTCCTAACCTACTAAT
* * * * *
51146246 ACAAATCTTGAATACAGGTGTTTCCATAGAGACACGGCCAATCACACGAGTGTGTTTAAGGCCGT
66 ACAAATATTGAATACAGGTGTTTCCATAGAGACACGACCAACCACACGAGCGTGCTTAAGGCCGT
51146311 -TGAAAACAGGGCAAAAGATTTCCCCAACACG
131 GTGAAAACAGGGCAAAAGATTTCCCCAACACG
51146342 GGCAACCCGAGCACTAACATTATTGATTTCTTTAAATTATGATATCTAACTCCTAACCTACTAAT
1 GGCAACCCGAGCACTAACATTATTGATTTCTTTAAATTATGATATCTAACTCCTAACCTACTAAT
* * *
51146407 AGAAATATTGAATACAGGTGTTTCCATAGAGATACGACCAACCACACTAGCGTGCTTAAGGCCGT
66 ACAAATATTGAATACAGGTGTTTCCATAGAGACACGACCAACCACACGAGCGTGCTTAAGGCCGT
*
51146472 GTGAAAACAGGGCAAAAGATTTCCCTAACACG
131 GTGAAAACAGGGCAAAAGATTTCCCCAACACG
51146504 GG
1 GG
51146506 ATACGATAAA
Statistics
Matches: 152, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
161 120 0.79
162 32 0.21
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (162 bp):
GGCAACCCGAGCACTAACATTATTGATTTCTTTAAATTATGATATCTAACTCCTAACCTACTAAT
ACAAATATTGAATACAGGTGTTTCCATAGAGACACGACCAACCACACGAGCGTGCTTAAGGCCGT
GTGAAAACAGGGCAAAAGATTTCCCCAACACG
Found at i:51157392 original size:94 final size:92
Alignment explanation
Indices: 51157258--51157428 Score: 270
Period size: 94 Copynumber: 1.8 Consensus size: 92
51157248 TTTGTATGCC
* *
51157258 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGATAGCAAATGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTATGAGAGCAAATGTAAGA-CATGTCTGG
51157323 GACATGGCATCAGCATTAAGACGAGGGCT
65 GACAT-GCATCAGCATTAAGACGAGGGCT
* * * *
51157352 AGTGTAAGACATGTCTGGGACATGTATCAGCCATAGTATGAGAGCCAGTGTAAGACATGTTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTATGAGAGCAAATGTAAGACATGTCTGGG
51157417 ACATGCATCAGC
66 ACATGCATCAGC
51157429 CTCGAGATTT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 8 0.11
93 13 0.18
94 50 0.70
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATAGTATGAGAGCAAATGTAAGACATGTCTGGG
ACATGCATCAGCATTAAGACGAGGGCT
Found at i:51157404 original size:46 final size:45
Alignment explanation
Indices: 51157255--51157518 Score: 248
Period size: 46 Copynumber: 5.8 Consensus size: 45
51157245 AGATTTGTAT
* *
51157255 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATA-GATGAGA
* * * *
51157301 GCAAATGTAAGACCATGTCTGGGACATGGCATCAG-CATTAAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCA-T-AGATGAGA
* *
51157349 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCCATAGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATAG-ATGAGA
* ***
51157395 GCCAGTGTAAGACATGTTTGGGACATGCATCAGCC-TCGAGATTTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--AGATGAGA
* * * * * *
51157441 GCCAGTGTCAGACATGTCTTGGACATGCGTCGGCTAT-GA-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATAGATGA-GA
*
51157485 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGC
51157519 ACGGTCACAT
Statistics
Matches: 176, Mismatches: 32, Indels: 22
0.77 0.14 0.10
Matches are distributed among these distances:
44 31 0.18
45 3 0.02
46 85 0.48
47 35 0.20
48 21 0.12
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATAGATGAGA
Found at i:51171038 original size:40 final size:39
Alignment explanation
Indices: 51170873--51171056 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
51170863 AAATTGAATG
* * *
51170873 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
51170913 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
51170953 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
51170993 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
51171032 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
51171057 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:51171081 original size:80 final size:81
Alignment explanation
Indices: 51170913--51171101 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
51170903 GCTGGAAATT
* * * *
51170913 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
51170978 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
51170994 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
51171057 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
51171073 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
51171102 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:51179155 original size:40 final size:39
Alignment explanation
Indices: 51178990--51179173 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
51178980 AAATTGAATG
* * *
51178990 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
51179030 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
51179070 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
51179110 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
51179149 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
51179174 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:51179198 original size:80 final size:81
Alignment explanation
Indices: 51179030--51179218 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
51179020 GCTGGAAATT
* * * *
51179030 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
51179095 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
51179111 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
51179174 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
51179190 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
51179219 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:51181446 original size:66 final size:68
Alignment explanation
Indices: 51181368--51181554 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
51181358 TAGTACCACT
*
51181368 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
51181430 CACG
65 CACG
51181434 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
51181499 ATCACG
63 ATCACG
51181505 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
51181555 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:51181479 original size:71 final size:71
Alignment explanation
Indices: 51181391--51181554 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51181381 CGATTTGTCT
51181391 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
51181456 CTTTCA
66 CTTTCA
51181462 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
51181527 CTTTCA
66 CTTTCA
51181533 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
51181555 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:51181592 original size:71 final size:70
Alignment explanation
Indices: 51181391--51181588 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
51181381 CGATTTGTCT
* * * *
51181391 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51181456 CTTTCA
65 CTTTCA
* * * *
51181462 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51181527 CTTTCA
65 CTTTCA
* *
51181533 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
51181589 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:51188861 original size:71 final size:71
Alignment explanation
Indices: 51188775--51188938 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51188765 CGATTTGTCT
51188775 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
51188840 CTTTCA
66 CTTTCA
51188846 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
51188911 CTTTCA
66 CTTTCA
51188917 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
51188939 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:51188976 original size:71 final size:70
Alignment explanation
Indices: 51188775--51188972 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
51188765 CGATTTGTCT
* * * *
51188775 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51188840 CTTTCA
65 CTTTCA
* * * *
51188846 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51188911 CTTTCA
65 CTTTCA
* *
51188917 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
51188973 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:51195243 original size:41 final size:41
Alignment explanation
Indices: 51195198--51195315 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
51195188 TGAAAGATAA
51195198 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
51195239 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51195269 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51195310 ATGTAG
1 ATGTAG
51195316 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:51195254 original size:71 final size:71
Alignment explanation
Indices: 51195166--51195329 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51195156 GAGATGTATC
51195166 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51195231 AGGACA
66 AGGACA
51195237 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51195302 AGGACA
66 AGGACA
51195308 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
51195330 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:51202844 original size:70 final size:71
Alignment explanation
Indices: 51202693--51202855 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
51202683 GAGATGTATC
51202693 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51202758 AGGACA
66 AGGACA
51202764 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
51202828 CGGACA
66 AGGACA
51202834 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
51202856 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:51205689 original size:48 final size:48
Alignment explanation
Indices: 51205562--51205895 Score: 314
Period size: 48 Copynumber: 6.9 Consensus size: 48
51205552 AAAAGGGTAA
** * * *
51205562 AATGCCGATGCCATG-TCCTGGACATGGTTTTACAATGGCTCTCATACATC
1 AATGCCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCACATA-A-C
** *
51205612 GGTGCCGATGCCATG-TCGCAGACATGGTCTTACACTGGCTCACATAAC
1 AATGCCGATGCCATGTTC-CAAACATGGTCTTACACTGGCTCACATAAC
* * * **
51205660 AATGCCAATGCCATGTTCCAAACATGGTCTTACATTGGCTCGCATATT
1 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAAC
* * *
51205708 GAGGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAC
1 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAAC
* * ** **
51205756 AATGCCGATGCCATCTTCCAAACATGGTCTTGCACTGGCTTGCATATT
1 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAAC
* * * * * * * *
51205804 GAGGTCGATGCCATATCCCAGACATGGTCTTACATTGACTCACATAAC
1 AATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAAC
**
51205852 AATGTTGATGCCAAT-TTCCAAACATGGTCTTACACTGGCTCACA
1 AATGCCGATGCC-ATGTTCCAAACATGGTCTTACACTGGCTCACA
51205896 CATAACCCTA
Statistics
Matches: 230, Mismatches: 51, Indels: 8
0.80 0.18 0.03
Matches are distributed among these distances:
48 186 0.81
49 5 0.02
50 38 0.17
51 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (48 bp):
AATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAAC
Found at i:51205747 original size:96 final size:95
Alignment explanation
Indices: 51205562--51205892 Score: 421
Period size: 96 Copynumber: 3.4 Consensus size: 95
51205552 AAAAGGGTAA
* ** * * * *
51205562 AATGCCGATGCCATGTCCTGGACATGGTTTTACAATGGCTCTCATACATCG-GTGCCGATGCCAT
1 AATGCCGATGCCATTTCC-AAACATGGTCTTACACTGGCTCGCAT--ATTGAG-GCCGATGCCAT
*
51205626 GTCGCAGACATGGTCTTACACTGGCTCACATAAC
62 GTCCCAGACATGGTCTTACACTGGCTCACATAAC
* *
51205660 AATGCCAATGCCATGTTCCAAACATGGTCTTACATTGGCTCGCATATTGAGGCCGATGCCATGTC
1 AATGCCGATGCCAT-TTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCCGATGCCATGTC
*
51205725 CCAAACATGGTCTTACACTGGCTCACATAAC
65 CCAGACATGGTCTTACACTGGCTCACATAAC
* * * *
51205756 AATGCCGATGCCATCTTCCAAACATGGTCTTGCACTGGCTTGCATATTGAGGTCGATGCCATATC
1 AATGCCGATGCCAT-TTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCCGATGCCATGTC
* *
51205821 CCAGACATGGTCTTACATTGACTCACATAAC
65 CCAGACATGGTCTTACACTGGCTCACATAAC
**
51205852 AATGTTGATGCCAATTTCCAAACATGGTCTTACACTGGCTC
1 AATGCCGATGCC-ATTTCCAAACATGGTCTTACACTGGCTC
51205893 ACACATAACC
Statistics
Matches: 206, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
96 166 0.81
97 3 0.01
98 34 0.17
99 3 0.01
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (95 bp):
AATGCCGATGCCATTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCCGATGCCATGTCC
CAGACATGGTCTTACACTGGCTCACATAAC
Found at i:51211574 original size:2 final size:2
Alignment explanation
Indices: 51211567--51211599 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
51211557 CATTTTAACT
51211567 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
51211600 CACAAATCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:51214286 original size:29 final size:29
Alignment explanation
Indices: 51214252--51214354 Score: 163
Period size: 29 Copynumber: 3.6 Consensus size: 29
51214242 TAATCAACCA
51214252 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
51214281 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
* * *
51214310 CGCACACTTAGTGCCATGCA-TTTCAAGCC
1 CGCACACTTAGTGCCATGTACTTT-AAACT
51214339 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
51214355 ATCTCACAAC
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
28 3 0.04
29 67 0.96
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGTACTTTAAACT
Found at i:51218448 original size:35 final size:35
Alignment explanation
Indices: 51218409--51218481 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
51218399 TCAAACAGTC
51218409 ATACAACACATAGAGGTATTTTGGTCTTTTACCTA
1 ATACAACACATAGAGGTATTTTGGTCTTTTACCTA
51218444 ATACAACACATAGAGGTATTTTGGTCTTTTACCTA
1 ATACAACACATAGAGGTATTTTGGTCTTTTACCTA
51218479 ATA
1 ATA
51218482 GGGGTAAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (35 bp):
ATACAACACATAGAGGTATTTTGGTCTTTTACCTA
Found at i:51235394 original size:28 final size:29
Alignment explanation
Indices: 51235361--51235459 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
51235351 CTAATAAGCC
* *
51235361 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
*
51235389 TGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* ** *
51235417 CGCACACTTAGTGC-TATACAATTTGAACC
1 CGCACACTTAGTGCTTATATAA-TCAAACT
51235446 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51235460 CAATCTCATG
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 2 0.03
28 41 0.67
29 18 0.30
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:51237162 original size:28 final size:29
Alignment explanation
Indices: 51237122--51237232 Score: 122
Period size: 28 Copynumber: 3.9 Consensus size: 29
51237112 CATGACTATA
*
51237122 AATGTGATTTGGGCCTAGT-GGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
51237150 AATGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * *
51237179 AATGTGA-ATAGGCTTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * *
51237207 CAA-GAGA-TTGGGCCTAGTGGGTCATA
1 -AATGTGATTTGGGCCTAATGGGCCATA
51237233 AATAGGTATG
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
28 53 0.75
29 18 0.25
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.29
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATG
Found at i:51240017 original size:2 final size:2
Alignment explanation
Indices: 51240010--51240035 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
51240000 CGGCTCTAGC
51240010 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
51240036 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51240843 original size:40 final size:40
Alignment explanation
Indices: 51240749--51240921 Score: 161
Period size: 40 Copynumber: 4.3 Consensus size: 40
51240739 ATATCTGGGC
* * *
51240749 TAAGTCCTGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAATCCGGGT
* * * *
51240790 CAATTCCCGAAGGCATTTGTGCAAGTTACCAAAACCGGGT
1 TAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGT
* * * *
51240830 TAAGTCCCAAAGGCATTTATGCGAGTTACTAAATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGT
* * * *
51240870 TAATTCCCGAAGGCAATTGTGCGAA-TCACTATAA-CCGGGC
1 TAAGTCCCGAAGGCATTTGTGC-AAGTTACTA-AATCCGGGT
*
51240910 TATGTCCCGAAG
1 TAAGTCCCGAAG
51240922 ACAATCGAGC
Statistics
Matches: 107, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
40 86 0.80
41 21 0.20
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCGGGT
Found at i:51240934 original size:80 final size:80
Alignment explanation
Indices: 51240777--51240935 Score: 180
Period size: 80 Copynumber: 2.0 Consensus size: 80
51240767 GTGCTAAGTG
* * *
51240777 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCAAGTTACCAAAACCGGGTTAAGTCCCAAAG
1 ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCAAGTCACCAAAACCGGGCTAAGTCCCAAAG
* **
51240842 GCATTTATGCGAGTT
66 ACATCGATGCGAGTT
* * * *
51240857 ACTAAATCCGGG-CTAATTCCCGAAGGCAATTGTGCGAA-TCACTATAACCGGGCTATGTCCCGA
1 ACTAAATCCGGGTC-AATTCCCGAAGGCAATTGTGC-AAGTCACCAAAACCGGGCTAAGTCCCAA
51240920 AGACAATCGA-GCGAGT
64 AGAC-ATCGATGCGAGT
51240936 CGCTATATCT
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
79 1 0.02
80 60 0.91
81 5 0.08
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCAATTGTGCAAGTCACCAAAACCGGGCTAAGTCCCAAAG
ACATCGATGCGAGTT
Found at i:51240942 original size:40 final size:40
Alignment explanation
Indices: 51240864--51240942 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
51240854 GTTACTAAAT
* * *
51240864 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* *
51240904 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATA
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATA
51240943 TCTGGTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
39 2 0.06
40 31 0.94
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:51243118 original size:26 final size:26
Alignment explanation
Indices: 51243088--51243143 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
51243078 CACCTTGGAA
*
51243088 GAAAGTTCTTCAGCTTGGCTGTAAAG
1 GAAAGTTCTTCAGCTTGGCCGTAAAG
*
51243114 GAAAGTTCTTCGGCTTGGCCGTAAAG
1 GAAAGTTCTTCAGCTTGGCCGTAAAG
51243140 GAAA
1 GAAA
51243144 ACTGAGTCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
GAAAGTTCTTCAGCTTGGCCGTAAAG
Found at i:51244215 original size:12 final size:12
Alignment explanation
Indices: 51244200--51244224 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51244190 ATTAGAGGAC
51244200 ACATGACCGTGT
1 ACATGACCGTGT
51244212 ACATGACCGTGT
1 ACATGACCGTGT
51244224 A
1 A
51244225 TCACACACGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (12 bp):
ACATGACCGTGT
Found at i:51245283 original size:48 final size:48
Alignment explanation
Indices: 51245231--51245361 Score: 144
Period size: 48 Copynumber: 2.8 Consensus size: 48
51245221 CTTGCACTCG
* *
51245231 AAGTGCTAATATC-TTAGCCAGTAGCCAAATCAATGAAGCTCGTACCCA
1 AAGTGCTAATATCATGAGCCAGTAGCCAAATCAATGAA-CTCGCACCCA
* * * *
51245279 AAGTGCGACTATCATGACCCA-AAGCCAAATCAAAAT-AACTCGCACCCA
1 AAGTGCTAATATCATGAGCCAGTAGCCAAATC--AATGAACTCGCACCCA
*
51245327 AAGTGCTAATATCATGGGCC-GTAGCCAAATCAATG
1 AAGTGCTAATATCATGAGCCAGTAGCCAAATCAATG
51245362 TATCCCCTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
46 3 0.04
48 54 0.81
49 7 0.10
50 3 0.04
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (48 bp):
AAGTGCTAATATCATGAGCCAGTAGCCAAATCAATGAACTCGCACCCA
Found at i:51250481 original size:93 final size:93
Alignment explanation
Indices: 51250369--51250540 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51250359 CGCCCATAAG
* *
51250369 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51250434 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
51250462 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51250527 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
51250541 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:51250537 original size:46 final size:46
Alignment explanation
Indices: 51250362--51250537 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
51250352 TGTAACCCGC
* * *
51250362 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
51250408 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
51250458 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51250501 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51250538 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51258059 original size:93 final size:93
Alignment explanation
Indices: 51257947--51258118 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
51257937 CGCCCATAAG
* *
51257947 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51258012 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
51258040 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
51258105 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
51258119 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:51258115 original size:46 final size:46
Alignment explanation
Indices: 51257940--51258115 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
51257930 TGTAACCCGC
* * *
51257940 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
51257986 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
51258036 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
51258079 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
51258116 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:51262449 original size:29 final size:28
Alignment explanation
Indices: 51262417--51262490 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 28
51262407 GATTCAAGCC
* *
51262417 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACAC-TAGTGCCATACAGTACAAACT
* *
51262446 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACAC-TAGTGCCATACAGTACAAACT
51262475 CGCACACTCAGTGCCA
1 CGCACACT-AGTGCCA
51262491 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 1 0.03
29 38 0.97
ACGTcount: A:0.31, C:0.34, G:0.15, T:0.20
Consensus pattern (28 bp):
CGCACACTAGTGCCATACAGTACAAACT
Found at i:51264424 original size:40 final size:39
Alignment explanation
Indices: 51264379--51264506 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
51264369 CGGAATACAA
51264379 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
51264419 CCGGATAGAACGAC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
* * *
51264457 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
51264497 CCGGATATAA
1 CCGGATATAA
51264507 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
38 34 0.45
39 2 0.03
40 40 0.53
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:51264439 original size:38 final size:40
Alignment explanation
Indices: 51264379--51264543 Score: 155
Period size: 40 Copynumber: 4.2 Consensus size: 40
51264369 CGGAATACAA
*
51264379 CCGGATA-TAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGTAACCAC-AGCACGAATGCCTTCGGGTCTTAGC
*
51264419 CCGGATAG-AACGAC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGTAACCACAGCACGAATGCCTTCGGGTCTTAGC
* *
51264457 CCGGAT-GTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATAGTAACCAC-AGCACGAA-TGCCTTCGGGTCTTAGC
* ** * *
51264497 CCGGATA-TAATTTC-CAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATAGTAA--CCACAGCACGAATGCCTTCGGGTCTTAGC
51264537 CCGGATA
1 CCGGATA
51264544 TCATTCAATT
Statistics
Matches: 106, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
37 1 0.01
38 34 0.32
39 2 0.02
40 65 0.61
41 3 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATAGTAACCACAGCACGAATGCCTTCGGGTCTTAGC
Found at i:51273658 original size:40 final size:39
Alignment explanation
Indices: 51273531--51273660 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 39
51273521 TTGCTGGAAA
*
51273531 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
51273571 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
51273611 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
51273651 TTATATCCGG
1 TTATATCCGG
51273661 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:51280948 original size:25 final size:25
Alignment explanation
Indices: 51280914--51280967 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
51280904 ACATTCGGCC
51280914 TATATATGAGTGCTTGATGCTATAT
1 TATATATGAGTGCTTGATGCTATAT
51280939 TATATATGAGTGCTTGATGCTATAT
1 TATATATGAGTGCTTGATGCTATAT
51280964 TATA
1 TATA
51280968 AGTATTGAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (25 bp):
TATATATGAGTGCTTGATGCTATAT
Found at i:51281739 original size:40 final size:39
Alignment explanation
Indices: 51281612--51281741 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
51281602 ATGCTGGAAA
* *
51281612 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
51281652 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
51281692 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
51281732 TTATATCCGG
1 TTATATCCGG
51281742 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Done.