Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 173 of 335
Found at i:51652378 original size:39 final size:39
Alignment explanation
Indices: 51652252--51652380 Score: 152
Period size: 40 Copynumber: 3.3 Consensus size: 39
51652242 ATGCTGGAAA
* *
51652252 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
51652292 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
51652332 TTCTATCCGGGCTAAGA-CCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
51652371 TTATATCCGG
1 TTATATCCGG
51652381 TTATATTCCG
Statistics
Matches: 73, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
38 1 0.01
39 25 0.34
40 46 0.63
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:51655819 original size:2 final size:2
Alignment explanation
Indices: 51655806--51655835 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
51655796 CGGCTCTAGC
*
51655806 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51655836 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:51656639 original size:40 final size:40
Alignment explanation
Indices: 51656555--51656695 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 40
51656545 GTCCGGGCTC
* *
51656555 AGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAACCGGGTTA
1 AGTCCCGAAGGCATTTGTGC-AAGTTACTAAAACCGGGTTA
*
51656596 AGTCCCGAAGGCATTTGTGCAAGTTACCAAAACCGGGTTA
1 AGTCCCGAAGGCATTTGTGCAAGTTACTAAAACCGGGTTA
* * * * *
51656636 AGTCCCTAAGGCATTCGTGCGAGTTACTAAATCCGGGCTA
1 AGTCCCGAAGGCATTTGTGCAAGTTACTAAAACCGGGTTA
* * *
51656676 ATTCCCGTAGGCAATTGTGC
1 AGTCCCGAAGGCATTTGTGC
51656696 GGATCACTAT
Statistics
Matches: 86, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 67 0.78
41 19 0.22
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
AGTCCCGAAGGCATTTGTGCAAGTTACTAAAACCGGGTTA
Found at i:51670552 original size:32 final size:27
Alignment explanation
Indices: 51670519--51670573 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
51670509 CCAAATACTT
51670519 ATCTTATTTCACCGTATACTAAGCTCA
1 ATCTTATTTCACCGTATACTAAGCTCA
51670546 ATCTTATTTCACCGTATACTAAGCTCA
1 ATCTTATTTCACCGTATACTAAGCTCA
51670573 A
1 A
51670574 CTCCACATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.36
Consensus pattern (27 bp):
ATCTTATTTCACCGTATACTAAGCTCA
Found at i:51680328 original size:29 final size:29
Alignment explanation
Indices: 51680270--51680385 Score: 162
Period size: 29 Copynumber: 4.0 Consensus size: 29
51680260 TACAAACATT
*
51680270 TGGCCCACTAGGCCC-AATCTCATTCATA
1 TGGCCCACTAGGCCCAAATCACATTCATA
* *
51680298 TGACCCACTAGGCCCAAATCACATTCGTA
1 TGGCCCACTAGGCCCAAATCACATTCATA
* *
51680327 TGGCCCATTAGGCCCAAATTACATTCATA
1 TGGCCCACTAGGCCCAAATCACATTCATA
* *
51680356 TGGCCCATTAGGCCCAAATCACATCCATA
1 TGGCCCACTAGGCCCAAATCACATTCATA
51680385 T
1 T
51680386 TCATGTGTTC
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 14 0.18
29 64 0.82
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
TGGCCCACTAGGCCCAAATCACATTCATA
Found at i:51686627 original size:28 final size:29
Alignment explanation
Indices: 51686590--51686656 Score: 100
Period size: 28 Copynumber: 2.3 Consensus size: 29
51686580 AAGTCTACAT
*
51686590 ACATACATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* *
51686618 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
51686647 ACATTCATAT
1 ACATTCATAT
51686657 TCATGCTCTC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 21 0.62
29 13 0.38
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:51686913 original size:16 final size:16
Alignment explanation
Indices: 51686867--51686914 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
51686857 CAAACTTTTA
*
51686867 GCTTTTTGGCATTTCA
1 GCTTTTTGGCATTTCG
* * * *
51686883 ACTTTTCGACCTTTCG
1 GCTTTTTGGCATTTCG
51686899 GCTTTTTGGCATTTCG
1 GCTTTTTGGCATTTCG
51686915 AGATTTACCG
Statistics
Matches: 23, Mismatches: 9, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.10, C:0.23, G:0.19, T:0.48
Consensus pattern (16 bp):
GCTTTTTGGCATTTCG
Found at i:51690231 original size:20 final size:20
Alignment explanation
Indices: 51690189--51690231 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
51690179 TTATTTCTGA
* * *
51690189 ATAAATTTTCATTTTCTACC
1 ATAAATTTTAAATTTCCACC
*
51690209 ATAAATTTTAAATTTCCAGC
1 ATAAATTTTAAATTTCCACC
51690229 ATA
1 ATA
51690232 TTCATCTATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.02, T:0.44
Consensus pattern (20 bp):
ATAAATTTTAAATTTCCACC
Found at i:51691775 original size:38 final size:38
Alignment explanation
Indices: 51691733--51691805 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
51691723 AAAATACAAA
51691733 TTATATTAGTAGACAAACATAAACATGTCCTTAGTAAC
1 TTATATTAGTAGACAAACATAAACATGTCCTTAGTAAC
* *
51691771 TTATATTAGTAGACGAACCTAAACATGTCCTTAGT
1 TTATATTAGTAGACAAACATAAACATGTCCTTAGT
51691806 CTAATCGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.33
Consensus pattern (38 bp):
TTATATTAGTAGACAAACATAAACATGTCCTTAGTAAC
Found at i:51696239 original size:41 final size:40
Alignment explanation
Indices: 51696182--51696261 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 40
51696172 TAGTTTGAGT
51696182 AAGGGAACAGATTGCAAATGTTCAGATTTGGACCCGAACCC
1 AAGGGAACAGATTGCAAATGTTCAGATTT-GACCCGAACCC
*
51696223 AAGGGAACAGATTGCAAATGTTCAGATTTGACCTGAACC
1 AAGGGAACAGATTGCAAATGTTCAGATTTGACCCGAACC
51696262 TGAATCATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
40 9 0.24
41 29 0.76
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (40 bp):
AAGGGAACAGATTGCAAATGTTCAGATTTGACCCGAACCC
Found at i:51710925 original size:20 final size:20
Alignment explanation
Indices: 51710902--51710956 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
51710892 TTGCACTTAC
51710902 GTGCCCTTGTTTGTAATT-T
1 GTGCCCTTGTTTGTAATTAT
* * *
51710921 GGTGCCCTTGATTGCACTTAT
1 -GTGCCCTTGTTTGTAATTAT
51710942 GTGCCCTTGTTTGTA
1 GTGCCCTTGTTTGTA
51710957 CTTCGGTACC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.11, C:0.20, G:0.24, T:0.45
Consensus pattern (20 bp):
GTGCCCTTGTTTGTAATTAT
Found at i:51710959 original size:20 final size:20
Alignment explanation
Indices: 51710886--51710950 Score: 78
Period size: 20 Copynumber: 3.2 Consensus size: 20
51710876 TACTTCGATA
*
51710886 CCTTGATTGCACTTACGTGC
1 CCTTGATTGCACTTATGTGC
* * *
51710906 CCTTGTTTGTAATT-TGGTGC
1 CCTTGATTGCACTTAT-GTGC
51710926 CCTTGATTGCACTTATGTGC
1 CCTTGATTGCACTTATGTGC
51710946 CCTTG
1 CCTTG
51710951 TTTGTACTTC
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
20 35 0.97
21 1 0.03
ACGTcount: A:0.12, C:0.25, G:0.22, T:0.42
Consensus pattern (20 bp):
CCTTGATTGCACTTATGTGC
Found at i:51710977 original size:40 final size:40
Alignment explanation
Indices: 51710850--51710977 Score: 161
Period size: 40 Copynumber: 3.2 Consensus size: 40
51710840 AATTATTGAA
* *
51710850 TGATTGCACTTACGTGCCGC-TATTTGTACTTCGATA-CCT
1 TGATTGCACTTACGTGCC-CTTGTTTGTACTTCGGTACCCT
* * *
51710889 TGATTGCACTTACGTGCCCTTGTTTGTAATTTGGTGCCCT
1 TGATTGCACTTACGTGCCCTTGTTTGTACTTCGGTACCCT
* *
51710929 TGATTGCACTTATGTGCCCTTGTTTGTACTTCGGTACCCC
1 TGATTGCACTTACGTGCCCTTGTTTGTACTTCGGTACCCT
*
51710969 TGAATGCAC
1 TGATTGCAC
51710978 ATCAATTCCC
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
38 1 0.01
39 29 0.38
40 46 0.61
ACGTcount: A:0.16, C:0.25, G:0.20, T:0.39
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCTTGTTTGTACTTCGGTACCCT
Found at i:51711770 original size:20 final size:20
Alignment explanation
Indices: 51711745--51711798 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
51711735 GTTTATGTTG
*
51711745 AGTAAATGGAATGTAAAGTA
1 AGTAAATGGAATGGAAAGTA
51711765 AGTAAATGGAATGGAAAGTA
1 AGTAAATGGAATGGAAAGTA
*
51711785 AGTAGATGGAATGG
1 AGTAAATGGAATGG
51711799 TTCATAGTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.22
Consensus pattern (20 bp):
AGTAAATGGAATGGAAAGTA
Found at i:51714390 original size:42 final size:42
Alignment explanation
Indices: 51714331--51714434 Score: 127
Period size: 42 Copynumber: 2.5 Consensus size: 42
51714321 CAATAGGCAC
* * *
51714331 GCTTAATATGCAAATCAAATCTAAGATCAACATAGTCTACAT
1 GCTTAACATGCAAATCAAATATAAGATCAACATAGTCGACAT
* * * * * *
51714373 GCTTAACATGCAAATCAAATATCAGTTTATCATAGTCGGCTT
1 GCTTAACATGCAAATCAAATATAAGATCAACATAGTCGACAT
51714415 GCTTAACATGCAAATCAAAT
1 GCTTAACATGCAAATCAAAT
51714435 GTCAATTAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (42 bp):
GCTTAACATGCAAATCAAATATAAGATCAACATAGTCGACAT
Found at i:51718846 original size:18 final size:18
Alignment explanation
Indices: 51718823--51718959 Score: 123
Period size: 18 Copynumber: 7.3 Consensus size: 18
51718813 ATATTTATGT
*
51718823 ATTACGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
* * * *
51718841 ATTACGATATGATAT-TTA
1 ATTATG-TAAGTTATGTAA
*
51718859 TTTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
*
51718877 ATTTTGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
*
51718895 GTTATGTAAGTTATGATATGA
1 ATTATGTAAGTTATG-TA--A
*
51718916 TATTTATTTAAGTTATGTAA
1 -A-TTATGTAAGTTATGTAA
51718936 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
*
51718954 GTTATG
1 ATTATG
51718960 CATTAAAAAA
Statistics
Matches: 96, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
17 6 0.06
18 64 0.67
19 9 0.09
20 1 0.01
21 1 0.01
22 2 0.02
23 13 0.14
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.47
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:51718871 original size:36 final size:34
Alignment explanation
Indices: 51718822--51718939 Score: 105
Period size: 27 Copynumber: 3.7 Consensus size: 34
51718812 TATATTTATG
*
51718822 TATTACGTAAGTTATGTAAATTACGATATGATATT
1 TATTATGTAAGTTATGTAAATTA-GATATGATATT
51718857 TATTTATGTAAGTTATGTAAATT---T-TG-TA--
1 TA-TTATGTAAGTTATGTAAATTAGATATGATATT
*
51718885 -AGTTATGTAAGTTATGTAAGTTATGATATGATATT
1 TA-TTATGTAAGTTATGTAAATTA-GATATGATATT
51718920 TA-T-T-TAAGTTATGTAAATTA
1 TATTATGTAAGTTATGTAAATTA
51718940 TGTAAGTTAT
Statistics
Matches: 69, Mismatches: 4, Indels: 23
0.72 0.04 0.24
Matches are distributed among these distances:
27 20 0.29
30 2 0.03
31 3 0.04
32 18 0.26
33 3 0.04
34 1 0.01
35 2 0.03
36 20 0.29
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (34 bp):
TATTATGTAAGTTATGTAAATTAGATATGATATT
Found at i:51718874 original size:9 final size:9
Alignment explanation
Indices: 51718860--51718959 Score: 111
Period size: 9 Copynumber: 11.6 Consensus size: 9
51718850 TGATATTTAT
51718860 TTATGTAAG
1 TTATGTAAG
*
51718869 TTATGTAAA
1 TTATGTAAG
*
51718878 TTTTGTAAG
1 TTATGTAAG
51718887 TTATGTAAG
1 TTATGTAAG
51718896 TTATGTAAG
1 TTATGTAAG
51718905 TTATG--A-
1 TTATGTAAG
*
51718911 -TATG-ATAT
1 TTATGTA-AG
*
51718919 TTATTTAAG
1 TTATGTAAG
*
51718928 TTATGTAAA
1 TTATGTAAG
51718937 TTATGTAAG
1 TTATGTAAG
51718946 TTATGTAAG
1 TTATGTAAG
51718955 TTATG
1 TTATG
51718960 CATTAAAAAA
Statistics
Matches: 77, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
5 4 0.05
7 2 0.03
9 70 0.91
10 1 0.01
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:51718947 original size:59 final size:62
Alignment explanation
Indices: 51718828--51718959 Score: 207
Period size: 59 Copynumber: 2.2 Consensus size: 62
51718818 TATGTATTAC
*
51718828 GTAAGTTATGTAAATTACGATATGATATTTATTTATGTAAGTTATGTAAATTTTGTAAGTTAT
1 GTAAGTTATGTAAATTACGATATGATATTTA-TTATGTAAGTTATGTAAATTATGTAAGTTAT
* *
51718891 GTAAGTTATGTAAGTTATGATATGATATTTA-T-T-TAAGTTATGTAAATTATGTAAGTTAT
1 GTAAGTTATGTAAATTACGATATGATATTTATTATGTAAGTTATGTAAATTATGTAAGTTAT
51718950 GTAAGTTATG
1 GTAAGTTATG
51718960 CATTAAAAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
59 35 0.53
60 1 0.02
61 1 0.02
63 29 0.44
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.47
Consensus pattern (62 bp):
GTAAGTTATGTAAATTACGATATGATATTTATTATGTAAGTTATGTAAATTATGTAAGTTAT
Found at i:51719912 original size:15 final size:15
Alignment explanation
Indices: 51719892--51719920 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
51719882 AGCAGATAAC
51719892 AGAAAATTGGATGAT
1 AGAAAATTGGATGAT
51719907 AGAAAATTGGATGA
1 AGAAAATTGGATGA
51719921 CAAAACTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (15 bp):
AGAAAATTGGATGAT
Found at i:51721458 original size:27 final size:27
Alignment explanation
Indices: 51721418--51721497 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
51721408 GAGGAGTGCG
*
51721418 ACGGCGACGCAGCAGATGGTCGGGTCA
1 ACGGCGACGTAGCAGATGGTCGGGTCA
* *
51721445 ACGGCGATGTAGCAGATGGTCGGGTCG
1 ACGGCGACGTAGCAGATGGTCGGGTCA
*
51721472 ACGGCGAGGT-GACAGATGGTCGGGTC
1 ACGGCGACGTAG-CAGATGGTCGGGTC
51721498 TGGCGATGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 1 0.02
27 47 0.98
ACGTcount: A:0.20, C:0.21, G:0.44, T:0.15
Consensus pattern (27 bp):
ACGGCGACGTAGCAGATGGTCGGGTCA
Found at i:51722270 original size:41 final size:41
Alignment explanation
Indices: 51722215--51722334 Score: 177
Period size: 41 Copynumber: 2.9 Consensus size: 41
51722205 TTTCTCATAT
* *
51722215 ATAAATGCCGCTACTACTTGACCTTTTGTGGCGTTTTTCTC
1 ATAAACGCCGCTACTACTTGACCTTTTGCGGCGTTTTTCTC
* *
51722256 ATAAACGCCGCTACTACTTGACCTTTTACGGCATTTTTCTC
1 ATAAACGCCGCTACTACTTGACCTTTTGCGGCGTTTTTCTC
* * *
51722297 ATAAACGACACTACTGCTTGACCTTTTGCGGCGTTTTT
1 ATAAACGCCGCTACTACTTGACCTTTTGCGGCGTTTTT
51722335 GGTCCAAACG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.20, C:0.26, G:0.16, T:0.38
Consensus pattern (41 bp):
ATAAACGCCGCTACTACTTGACCTTTTGCGGCGTTTTTCTC
Found at i:51725266 original size:23 final size:23
Alignment explanation
Indices: 51725239--51725299 Score: 86
Period size: 26 Copynumber: 2.5 Consensus size: 23
51725229 ATATTTTGTT
*
51725239 ATTTGATTTCTTGTGGTTCATTG
1 ATTTGTTTTCTTGTGGTTCATTG
51725262 ATTTGTTTTCTTCTTGTGGTTCATTG
1 ATTTG--TT-TTCTTGTGGTTCATTG
51725288 ATTTGTTTTCTT
1 ATTTGTTTTCTT
51725300 TCTTTTATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
23 10 0.29
24 2 0.06
25 1 0.03
26 21 0.62
ACGTcount: A:0.10, C:0.10, G:0.18, T:0.62
Consensus pattern (23 bp):
ATTTGTTTTCTTGTGGTTCATTG
Found at i:51725282 original size:26 final size:26
Alignment explanation
Indices: 51725246--51725299 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
51725236 GTTATTTGAT
51725246 TTCTTGTGGTTCATTGATTTGTTTTC
1 TTCTTGTGGTTCATTGATTTGTTTTC
51725272 TTCTTGTGGTTCATTGATTTGTTTTC
1 TTCTTGTGGTTCATTGATTTGTTTTC
51725298 TT
1 TT
51725300 TCTTTTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.07, C:0.11, G:0.19, T:0.63
Consensus pattern (26 bp):
TTCTTGTGGTTCATTGATTTGTTTTC
Found at i:51729406 original size:28 final size:28
Alignment explanation
Indices: 51729375--51729451 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 28
51729365 CAAATATGGT
*
51729375 ACTTAGTGTACGAAATATTGAGAATGAC
1 ACTTAGTGTGCGAAATATTGAGAATGAC
* * *
51729403 ACTTAATGTGTGAGATATTGAGAATGAC
1 ACTTAGTGTGCGAAATATTGAGAATGAC
*
51729431 ACTTAGTGTGCAAAATATTGA
1 ACTTAGTGTGCGAAATATTGA
51729452 ATGATTAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (28 bp):
ACTTAGTGTGCGAAATATTGAGAATGAC
Found at i:51729568 original size:39 final size:39
Alignment explanation
Indices: 51729524--51729824 Score: 462
Period size: 39 Copynumber: 7.7 Consensus size: 39
51729514 GACTTTATAA
*
51729524 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
51729563 TGGTGTTATATCCGGGTTAAGTCCTGAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
51729602 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
51729641 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
51729680 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
51729719 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
51729758 TGGTGTTATATCTGGGCTAAAGTCCCGCAA-GC-TTTGTGT
1 TGGTGTTATATCCGGGCT-AAGTCCCG-AAGGCATTCGTGC
*
51729797 TGGTATTATATCCGGGCTTAAAGTCCCG
1 TGGTGTTATATCCGGGC-T-AAGTCCCG
51729825 CATGCTTTGT
Statistics
Matches: 243, Mismatches: 16, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 222 0.91
40 19 0.08
41 2 0.01
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.31
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:51735688 original size:47 final size:47
Alignment explanation
Indices: 51735618--51735747 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 47
51735608 GTGCGAGTAA
* * ** *
51735618 TACCTTAATTTGGCTACAGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTAATTTGGCTACAGGCCATGGTATAGGTACTCCGAGAGAAGT
* *
51735665 TACCTTGATTTGGCTAC-GAGCCATGGTATAGGTACTCCGAGATAAGT
1 TACCTTAATTTGGCTACAG-GCCATGGTATAGGTACTCCGAGAGAAGT
51735712 TACCTTAATTTGGCTACAGGCCATGGTATAGGTACT
1 TACCTTAATTTGGCTACAGGCCATGGTATAGGTACT
51735748 TACCGATTGA
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 1 0.01
47 71 0.97
48 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (47 bp):
TACCTTAATTTGGCTACAGGCCATGGTATAGGTACTCCGAGAGAAGT
Found at i:51736983 original size:40 final size:40
Alignment explanation
Indices: 51736924--51737109 Score: 203
Period size: 40 Copynumber: 4.7 Consensus size: 40
51736914 CAATTGAATG
* * * *
51736924 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
51736964 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51737004 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51737044 AAATCCGGGCTAATA-CCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
*
51737083 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
51737110 CGGTGATGTG
Statistics
Matches: 123, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 34 0.28
40 89 0.72
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:51737128 original size:40 final size:39
Alignment explanation
Indices: 51736924--51737130 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
51736914 CAATTGAATG
* * * * **
51736924 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTGGTT
* * **
51736964 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTGGTT
* *
51737004 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTGGTT
* * *
51737044 AAATCCGGGCTAATA-CCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTGGTT
* *
51737083 CTATCCGGGCTAAGACCCGAAGGCATTCGGTG-ATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATT--GTGCAAGTGGTT
51737123 ATATCCGG
1 ATATCCGG
51737131 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
39 37 0.26
40 99 0.71
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTGGTT
Found at i:51737129 original size:79 final size:79
Alignment explanation
Indices: 51736926--51737130 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 79
51736916 ATTGAATGAT
* * ** * ** *
51736926 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
51736991 TGTGCTAGTGACTA
66 TGTGCAAGTGACTA
* * * *
51737005 CATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATA-CCGAAGGCAT
1 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATATCCGGGCTAAGACCCGAAGGCAA
*
51737069 TTGTGCAAGTCGTTCT-
65 TTGTGCAAGT-G-ACTA
*
51737085 ATCCGGGCTAAGACCCGAAGGCATTCGGTG-ATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTC-GTGCAAGTGGTTATATCCGG
51737131 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
79 57 0.54
80 47 0.44
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTGACTA
Found at i:51753934 original size:49 final size:49
Alignment explanation
Indices: 51753862--51754222 Score: 578
Period size: 49 Copynumber: 7.4 Consensus size: 49
51753852 ATCAAGATTC
* * *
51753862 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * *
51753911 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
51753960 GCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
51754009 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
51754058 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
51754107 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
51754156 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
51754205 GTGAAAGTGTATATATAT
1 GTGAAAGTGTATGTATAT
51754223 ATGTGGTAAA
Statistics
Matches: 298, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 298 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:51754346 original size:37 final size:36
Alignment explanation
Indices: 51754291--51754377 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
51754281 AACTTGGAAA
51754291 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
51754329 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
51754366 TATGTCCGGGTA
1 TATGTCCGGGTA
51754378 AGACTTCATA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:51760124 original size:22 final size:21
Alignment explanation
Indices: 51760096--51760164 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 21
51760086 TCTTTGATTA
51760096 TTAGCACATTAGTGCTATCTGT
1 TTAGCACATT-GTGCTATCTGT
51760118 TTAGCACATCTGTGCTATCTGT
1 TTAGCACAT-TGTGCTATCTGT
* * * *
51760140 ATAACACTTTTGTGCTCTCTGT
1 TTAGCAC-ATTGTGCTATCTGT
51760162 TTA
1 TTA
51760165 ATAGTGCATA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 38 0.95
23 2 0.05
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.43
Consensus pattern (21 bp):
TTAGCACATTGTGCTATCTGT
Found at i:51773821 original size:40 final size:39
Alignment explanation
Indices: 51773776--51773905 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
51773766 CGGAACATAA
51773776 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
51773816 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
51773856 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
51773896 CCGGATATAA
1 CCGGATATAA
51773906 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:51773920 original size:40 final size:40
Alignment explanation
Indices: 51773792--51773943 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
51773782 ATAACCATGT
* * *
51773792 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
51773832 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
51773872 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
51773912 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
51773944 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:51773926 original size:80 final size:80
Alignment explanation
Indices: 51773792--51773941 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
51773782 ATAACCATGT
*
51773792 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
51773856 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
51773872 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
51773935 CCCGGAT
64 CCCGGAT
51773942 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:51781842 original size:40 final size:39
Alignment explanation
Indices: 51781797--51781926 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
51781787 CGGAATATAA
51781797 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
51781837 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
51781877 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
51781917 CCGGATATAA
1 CCGGATATAA
51781927 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:51781941 original size:40 final size:40
Alignment explanation
Indices: 51781813--51781964 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
51781803 ATAACCATGT
* * *
51781813 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
51781853 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
51781893 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
51781933 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
51781965 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:51781947 original size:80 final size:80
Alignment explanation
Indices: 51781813--51781962 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
51781803 ATAACCATGT
*
51781813 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
51781877 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
51781893 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
51781956 CCCGGAT
64 CCCGGAT
51781963 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:51784951 original size:66 final size:68
Alignment explanation
Indices: 51784873--51785059 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
51784863 TAGTACCACT
*
51784873 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
51784935 CACG
65 CACG
51784939 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
51785004 ATCACG
63 ATCACG
51785010 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
51785060 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:51784984 original size:71 final size:71
Alignment explanation
Indices: 51784896--51785059 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51784886 CGATTTGTCT
51784896 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
51784961 CTTTCA
66 CTTTCA
51784967 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
51785032 CTTTCA
66 CTTTCA
51785038 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
51785060 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:51785097 original size:71 final size:70
Alignment explanation
Indices: 51784896--51785093 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
51784886 CGATTTGTCT
* * * *
51784896 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51784961 CTTTCA
65 CTTTCA
* * * *
51784967 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
51785032 CTTTCA
65 CTTTCA
* *
51785038 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
51785094 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:51792643 original size:40 final size:40
Alignment explanation
Indices: 51792531--51792699 Score: 216
Period size: 40 Copynumber: 4.2 Consensus size: 40
51792521 CGGGATTTAA
* * * * *
51792531 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
51792571 CCGGATTTGGT-GACTTGC-CAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51792610 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51792650 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51792690 CCGGATATAT
1 CCGGATATAT
51792700 TTCCAATGTT
Statistics
Matches: 111, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 28 0.25
40 82 0.74
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:51800727 original size:40 final size:40
Alignment explanation
Indices: 51800619--51800828 Score: 298
Period size: 40 Copynumber: 5.2 Consensus size: 40
51800609 CGGGATTTAA
* * * * *
51800619 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
51800659 CCGGATTTGGT-GACTTGCA-GAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACG-AATGCCTTCGGGTCTTAGC
51800699 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51800739 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51800779 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
51800819 CCGGATATAT
1 CCGGATATAT
51800829 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 13, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 2 0.01
40 150 0.98
41 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:51801481 original size:59 final size:59
Alignment explanation
Indices: 51801409--51801529 Score: 242
Period size: 59 Copynumber: 2.1 Consensus size: 59
51801399 CCGAATGCAT
51801409 GCACACTAATTACCCCTCATGTGGCCGAATATACACTTAATACCACACAAAAAAAAACA
1 GCACACTAATTACCCCTCATGTGGCCGAATATACACTTAATACCACACAAAAAAAAACA
51801468 GCACACTAATTACCCCTCATGTGGCCGAATATACACTTAATACCACACAAAAAAAAACA
1 GCACACTAATTACCCCTCATGTGGCCGAATATACACTTAATACCACACAAAAAAAAACA
51801527 GCA
1 GCA
51801530 TACATTTTAC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.44, C:0.29, G:0.09, T:0.18
Consensus pattern (59 bp):
GCACACTAATTACCCCTCATGTGGCCGAATATACACTTAATACCACACAAAAAAAAACA
Found at i:51806046 original size:18 final size:19
Alignment explanation
Indices: 51806006--51806047 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
51805996 AATAAGACCT
*
51806006 CTTT-GGATTTTATTTATA
1 CTTTGGGATTTTAATTATA
*
51806024 ATTTGGGATTTTAATT-TA
1 CTTTGGGATTTTAATTATA
51806042 CTTTGG
1 CTTTGG
51806048 TTATAATTGC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.21, C:0.05, G:0.17, T:0.57
Consensus pattern (19 bp):
CTTTGGGATTTTAATTATA
Found at i:51812411 original size:28 final size:28
Alignment explanation
Indices: 51812371--51812441 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 28
51812361 TATAGTAAGT
*
51812371 TCGCACACTTAGTGCT-TAATAATCAAAC
1 TCGCACACTTAGTGCTAT-ACAATCAAAC
*
51812399 TCGCACACTTAGTGCTATACAATTAAAC
1 TCGCACACTTAGTGCTATACAATCAAAC
51812427 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
51812442 CAATCTCATA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 39 0.98
29 1 0.03
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATACAATCAAAC
Found at i:51813111 original size:102 final size:102
Alignment explanation
Indices: 51812826--51813113 Score: 533
Period size: 101 Copynumber: 2.8 Consensus size: 102
51812816 CTTCTTAAAC
* *
51812826 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAATATAATAAACAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
51812891 TTAATCCATGCATATTGGTCGGCTACTTTCATCTTTT
66 TTAATCCATGCATATTGGTCGGCTACTTTCATCTTTT
*
51812928 ATAATATATTAACATATATT-AAGTATACCATAATGCCATAAAACATAATAAATAATTCAATTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
*
51812992 TTAATCCATGCATATTGGTCGGCTACTTTTATCTTTT
66 TTAATCCATGCATATTGGTCGGCTACTTTCATCTTTT
51813029 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
51813094 TTAATCCATGCATATTGGTC
66 TTAATCCATGCATATTGGTC
51813114 TGCCGCTAAT
Statistics
Matches: 180, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
101 97 0.54
102 83 0.46
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (102 bp):
ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
TTAATCCATGCATATTGGTCGGCTACTTTCATCTTTT
Found at i:51820680 original size:40 final size:40
Alignment explanation
Indices: 51820636--51820879 Score: 350
Period size: 40 Copynumber: 6.1 Consensus size: 40
51820626 CAGGATTTAA
* * * *
51820636 CCGGATATAGGT-ACTCGCTCGAATTCCTTCGGGACATAGC
1 CCGGATATA-GTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51820676 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
51820716 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51820756 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51820796 TCGGA-ACTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
51820836 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
51820876 CCGG
1 CCGG
51820880 TTATCATCCA
Statistics
Matches: 190, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 3 0.02
40 187 0.98
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51828748 original size:40 final size:40
Alignment explanation
Indices: 51828649--51828983 Score: 484
Period size: 40 Copynumber: 8.5 Consensus size: 40
51828639 AAGCCAAGTA
* * * * *
51828649 CCTTCGGGATTTA-ACCGGATATAGT-ACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
51828687 CCTTC-GGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51828726 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
51828766 CCTT-TGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51828805 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51828845 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51828885 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
51828925 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
51828965 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51828984 TTATCATCCA
Statistics
Matches: 275, Mismatches: 17, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
37 5 0.02
38 16 0.06
39 53 0.19
40 201 0.73
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51831450 original size:30 final size:30
Alignment explanation
Indices: 51831416--51831475 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
51831406 ATTTAATACG
*
51831416 AACTTTAAAAAAATTACACTTTTTCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
51831446 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
51831476 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:51837012 original size:40 final size:39
Alignment explanation
Indices: 51836916--51837093 Score: 133
Period size: 40 Copynumber: 4.4 Consensus size: 39
51836906 GAATGGTGTC
* * * *
51836916 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACAAAAT
*
51836956 CCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAAT
1 -CGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTA-CAAAAT
* ** * *
51836997 CGGGTTAAGTCCCGAAGGCATTCATGCGAGTTATTAAATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CAAAAT
* * * * * * *
51837037 CGGGCTAATTCTCGAAGGCAATTGTGCGAATCACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC-AAAAT
*
51837077 CGGGCTATGTCCCGAAG
1 CGGGCTAAGTCCCGAAG
51837094 ACAATCGAGC
Statistics
Matches: 107, Mismatches: 26, Indels: 9
0.75 0.18 0.06
Matches are distributed among these distances:
40 78 0.73
41 29 0.27
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACAAAAT
Found at i:51844972 original size:40 final size:40
Alignment explanation
Indices: 51844836--51845014 Score: 193
Period size: 40 Copynumber: 4.5 Consensus size: 40
51844826 TCGAATGGTG
* * *
51844836 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
51844877 TCCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
51844917 -CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
51844956 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51844997 -CCGGGCTATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
51845015 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 33 0.28
40 56 0.48
41 27 0.23
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51844975 original size:79 final size:80
Alignment explanation
Indices: 51844837--51845028 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
51844827 CGAATGGTGT
* * * *
51844837 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
51844902 GTGCGAGTTACCA-AA
65 GTGCGAATCACCATAA
* * * *
51844917 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
*
51844981 GTGCGAATCACTATAA
65 GTGCGAATCACCATAA
* * * *
51844997 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
51845029 CGCTATATCC
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 1 0.01
79 39 0.41
80 54 0.57
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCATAA
Found at i:51845035 original size:40 final size:40
Alignment explanation
Indices: 51844957--51845040 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
51844947 GTTATTAAAT
* * *
51844957 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
51844997 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
51845037 CCGG
1 CCGG
51845041 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:51850118 original size:30 final size:30
Alignment explanation
Indices: 51850084--51850143 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
51850074 ATTTAATACG
*
51850084 AACTTTAAAAAAATTACACTTTTTCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
51850114 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
51850144 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:51851060 original size:19 final size:19
Alignment explanation
Indices: 51851011--51851061 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
51851001 TGACTTAACA
51851011 AAACTAATTGG-TTTTCAT
1 AAACTAATTGGTTTTTCAT
* *
51851029 AAA-TAAGGATGGTTTTTCCT
1 AAACTAA--TTGGTTTTTCAT
51851049 AAACTAATTGGTT
1 AAACTAATTGGTT
51851062 ACAAAAGCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
17 3 0.12
18 3 0.12
19 8 0.31
20 9 0.35
21 3 0.12
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (19 bp):
AAACTAATTGGTTTTTCAT
Found at i:51860931 original size:17 final size:18
Alignment explanation
Indices: 51860911--51860945 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
51860901 CTTTTATTAA
*
51860911 GTTTTTAATATTT-TTTT
1 GTTTTTAAGATTTATTTT
51860928 GTTTTTAAGATTTATTTT
1 GTTTTTAAGATTTATTTT
51860946 TTTCTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.71
Consensus pattern (18 bp):
GTTTTTAAGATTTATTTT
Found at i:51866279 original size:28 final size:28
Alignment explanation
Indices: 51866239--51866308 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
51866229 ATAGTAAGTC
*
51866239 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
51866267 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
51866295 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51866309 CAATCTAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:51866870 original size:2 final size:2
Alignment explanation
Indices: 51866863--51866894 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
51866853 GGCATACATT
51866863 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51866895 GCCGAATGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51868896 original size:2 final size:2
Alignment explanation
Indices: 51868889--51868928 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
51868879 GCTTCGCCAC
51868889 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51868929 GTTCTGGTGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51868961 original size:27 final size:26
Alignment explanation
Indices: 51868923--51868982 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
51868913 ATATATATAT
* *
51868923 ATATATGTTCTGGTGGCTTAGCCACA
1 ATATCTGTTCTGGTGACTTAGCCACA
* *
51868949 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACTTAGCCACA
51868976 ATATCTG
1 ATATCTG
51868983 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACTTAGCCACA
Found at i:51871056 original size:27 final size:27
Alignment explanation
Indices: 51871035--51871466 Score: 621
Period size: 27 Copynumber: 16.0 Consensus size: 27
51871025 CAAAATGATT
*
51871035 GAAATACCCCTGTAGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
51871062 GAAATACCCCTATAGGATAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
51871089 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
51871116 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
51871143 GAAATACCCTTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
51871170 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
51871197 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
51871224 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
51871251 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* **
51871278 AAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
51871305 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
51871332 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * **
51871359 AAAATACCCCTATAAGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
** *
51871386 GAAATACCCCTGTAGGACAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
51871413 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
51871440 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
51871467 ATTTTGCCCC
Statistics
Matches: 366, Mismatches: 39, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 366 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:51871896 original size:22 final size:22
Alignment explanation
Indices: 51871871--51871918 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
51871861 TGGCTTTGCA
51871871 CCAACCT-ACATATGGCTCTGTG
1 CCAACCTGA-ATATGGCTCTGTG
* *
51871893 CCAACCTGATTATGGCTGTGTG
1 CCAACCTGAATATGGCTCTGTG
51871915 CCAA
1 CCAA
51871919 ACATATTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (22 bp):
CCAACCTGAATATGGCTCTGTG
Found at i:51872107 original size:27 final size:28
Alignment explanation
Indices: 51872077--51872187 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 28
51872067 ATTCTGTTAA
* *
51872077 GTGGCTTTGCCAC-ATTATCTGTTTCTG
1 GTGGCTATGCCACAAATATCTGTTTCTG
*
51872104 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTATGCCACAAATATCTGTTTCTG
*
51872131 GTGGCTATGACACAAATATCTG-TTCTG
1 GTGGCTATGCCACAAATATCTGTTTCTG
* * * *
51872158 GTGGCTCTGTCAC-AATATCTATATCTG
1 GTGGCTATGCCACAAATATCTGTTTCTG
51872185 GTG
1 GTG
51872188 ACTCTGTCAC
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 7 0.10
27 60 0.82
28 6 0.08
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (28 bp):
GTGGCTATGCCACAAATATCTGTTTCTG
Found at i:51872202 original size:27 final size:27
Alignment explanation
Indices: 51872099--51872199 Score: 132
Period size: 27 Copynumber: 3.7 Consensus size: 27
51872089 CATTATCTGT
*
51872099 TTCTGGTGGCTATGCCACAAATATCTA
1 TTCTGGTGGCTATGTCACAAATATCTA
* *
51872126 TTCTGGTGGCTATGACACAAATATCTG
1 TTCTGGTGGCTATGTCACAAATATCTA
*
51872153 TTCTGGTGGCTCTGTCAC-AATATCTA
1 TTCTGGTGGCTATGTCACAAATATCTA
* *
51872179 TATCTGGTGACTCTGTCACAA
1 T-TCTGGTGGCTATGTCACAA
51872200 TATTTGTTCT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.12
27 57 0.86
28 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
TTCTGGTGGCTATGTCACAAATATCTA
Found at i:51872208 original size:53 final size:54
Alignment explanation
Indices: 51872092--51872211 Score: 154
Period size: 54 Copynumber: 2.2 Consensus size: 54
51872082 TTTGCCACAT
*
51872092 TATCTGTTTCTGGTGGCTATGCCACAAATATCTATTCTGGTGGCTATGACACAAA
1 TATCTG-TTCTGGTGGCTATGCCACAAATATCTATTCTGGTGACTATGACACAAA
* * * *
51872147 TATCTGTTCTGGTGGCTCTGTCAC-AATATCTATATCTGGTGACTCTGTCAC-AA
1 TATCTGTTCTGGTGGCTATGCCACAAATATCTAT-TCTGGTGACTATGACACAAA
*
51872200 TATTTGTTCTGG
1 TATCTGTTCTGG
51872212 CAGCCATGCT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
53 22 0.38
54 30 0.52
55 6 0.10
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (54 bp):
TATCTGTTCTGGTGGCTATGCCACAAATATCTATTCTGGTGACTATGACACAAA
Found at i:51872388 original size:25 final size:25
Alignment explanation
Indices: 51872360--51872420 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
51872350 AGTGATACAG
51872360 ATTCTGATTCTGTCACCTAATTCTA
1 ATTCTGATTCTGTCACCTAATTCTA
* *
51872385 ATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGTCACCTAATTCTA
*
51872410 ATTCTAATTCT
1 ATTCTGATTCT
51872421 CATTTTGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.21, C:0.23, G:0.10, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGTCACCTAATTCTA
Found at i:51873866 original size:18 final size:18
Alignment explanation
Indices: 51873843--51873889 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
51873833 AAAAAAGCCT
51873843 GAAATATTTGATGTCACA
1 GAAATATTTGATGTCACA
51873861 GAAATATTTGATGTCACA
1 GAAATATTTGATGTCACA
*
51873879 GAAAGATTTGA
1 GAAATATTTGA
51873890 ATATGAGACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (18 bp):
GAAATATTTGATGTCACA
Found at i:51875890 original size:21 final size:21
Alignment explanation
Indices: 51875849--51875892 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
51875839 GATAATTTTT
*
51875849 AAAGATAATTAATAAGGTTAA
1 AAAGATAATTAATAAGATTAA
*
51875870 AAAGGTAATTTAATAA-ATTAA
1 AAAGATAA-TTAATAAGATTAA
51875891 AA
1 AA
51875893 TAGGGTACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (21 bp):
AAAGATAATTAATAAGATTAA
Found at i:51876769 original size:41 final size:41
Alignment explanation
Indices: 51876662--51876771 Score: 125
Period size: 41 Copynumber: 2.7 Consensus size: 41
51876652 AAGATTATCT
* *
51876662 TGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCTT
1 TGAATTGCACATACGTGCTCCTGTTTGTACTTCGGTACCTG
* * * *
51876703 TGAATTTCATATAGGTG-TCTATGTTTGTACTTCGGTATCC-G
1 TGAATTGCACATACGTGCTC-CTGTTTGTACTTCGGTA-CCTG
*
51876744 TGAATTGCGCATACGTGCTCCTGTTTGT
1 TGAATTGCACATACGTGCTCCTGTTTGT
51876772 GCTCTGGTAC
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
40 1 0.02
41 50 0.91
42 4 0.07
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (41 bp):
TGAATTGCACATACGTGCTCCTGTTTGTACTTCGGTACCTG
Found at i:51881363 original size:40 final size:40
Alignment explanation
Indices: 51881162--51881349 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
51881152 TATTAGGATG
* * *
51881162 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51881202 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51881241 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51881281 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51881321 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
51881350 AGCAAGTAGC
Statistics
Matches: 136, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 35 0.26
40 101 0.74
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51881363 original size:80 final size:79
Alignment explanation
Indices: 51881162--51881372 Score: 286
Period size: 80 Copynumber: 2.7 Consensus size: 79
51881152 TATTAGGATG
* *
51881162 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAGCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATA-TCCGGGCTAAGCCCGAAGGC
51881225 ATTTGTACGAGTTACT
64 ATTTGTACGAGTTACT
* ** *
51881241 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTA-CTATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGGCTAAG-CCCGAAGGC
*
51881305 ATTTGTGCGAGTTACT
64 ATTTGTACGAGTTACT
*
51881321 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAA
51881373 ATTTCGAAGG
Statistics
Matches: 116, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
79 52 0.45
80 64 0.55
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGCCCGAAGGCAT
TTGTACGAGTTACT
Found at i:51881382 original size:39 final size:40
Alignment explanation
Indices: 51881162--51881374 Score: 202
Period size: 40 Copynumber: 5.4 Consensus size: 40
51881152 TATTAGGATG
* * * * *
51881162 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCAAGTTACT
* * *
51881202 A-ATTCCGGGCT-AAGCCCGAAGGCATTTGTA-CGAGTTACT
1 ATA-ACCGGGCTAAATCCCGAAGGCATTTG-AGCAAGTTACT
* * * **
51881241 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCAAGTTACT
* * *
51881281 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCAAGTTACT
*
51881321 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
1 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCAAGTTA-CT
*
51881361 ATATCC-GGCTAAAT
1 ATAACCGGGCTAAAT
51881375 TTCGAAGGTA
Statistics
Matches: 150, Mismatches: 17, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
39 41 0.27
40 109 0.73
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAATCCCGAAGGCATTTGAGCAAGTTACT
Found at i:51895671 original size:40 final size:39
Alignment explanation
Indices: 51895605--51895755 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
51895595 AAATTGAATG
* * *
51895605 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
51895644 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
51895684 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
51895724 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
51895756 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:51895769 original size:40 final size:39
Alignment explanation
Indices: 51895642--51895771 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
51895632 ATGCTGGAAA
* *
51895642 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
51895682 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
51895722 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
51895762 TTATATCCGG
1 TTATATCCGG
51895772 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:51906391 original size:40 final size:40
Alignment explanation
Indices: 51906264--51906393 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
51906254 ATGCTGGAAA
* * *
51906264 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
51906304 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
51906344 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
51906384 TTATATCCGG
1 TTATATCCGG
51906394 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:51909032 original size:184 final size:184
Alignment explanation
Indices: 51908717--51909085 Score: 713
Period size: 184 Copynumber: 2.0 Consensus size: 184
51908707 ACAATCAATC
*
51908717 ATAAATATAAAACTTATCACGTGCATCAAGTTTTTGGTACTGTTGCCGGCGACTAAGATATTAGG
1 ATAAATATAAAACTTATCACGTGCATCAAGTTTTTGGTACCGTTGCCGGCGACTAAGATATTAGG
51908782 AACACTTAATTTTTATTACTTTAGCCATTTATTTTTATTGCAATTTAAATTTATTTTTGCTTAAA
66 AACACTTAATTTTTATTACTTTAGCCATTTATTTTTATTGCAATTTAAATTTATTTTTGCTTAAA
51908847 TTATTAAAATTTTCTTTTATTTGCTTCTGGCAGGTTTTTATAGTTTATGACTAG
131 TTATTAAAATTTTCTTTTATTTGCTTCTGGCAGGTTTTTATAGTTTATGACTAG
51908901 ATAAATATAAAACTTATCACGTGCATCAAGTTTTTGGTACCGTTGCCGGCGACTAAGATATTAGG
1 ATAAATATAAAACTTATCACGTGCATCAAGTTTTTGGTACCGTTGCCGGCGACTAAGATATTAGG
51908966 AACACTTAATTTTTATTACTTTAGCCATTTATTTTTATTGCAATTTAAATTTATTTTTTG-TTAA
66 AACACTTAATTTTTATTACTTTAGCCATTTATTTTTATTGCAATTTAAATTTA-TTTTTGCTTAA
51909030 ATTATTAAAATTTTCTTTTATTTGCTTCTGGCAGGTTTTTATAGTTTATGACTAG
130 ATTATTAAAATTTTCTTTTATTTGCTTCTGGCAGGTTTTTATAGTTTATGACTAG
51909085 A
1 A
51909086 AGAAACCCGT
Statistics
Matches: 183, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
184 177 0.97
185 6 0.03
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (184 bp):
ATAAATATAAAACTTATCACGTGCATCAAGTTTTTGGTACCGTTGCCGGCGACTAAGATATTAGG
AACACTTAATTTTTATTACTTTAGCCATTTATTTTTATTGCAATTTAAATTTATTTTTGCTTAAA
TTATTAAAATTTTCTTTTATTTGCTTCTGGCAGGTTTTTATAGTTTATGACTAG
Found at i:51912251 original size:13 final size:13
Alignment explanation
Indices: 51912233--51912262 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
51912223 TTGAAGACTT
51912233 TTATTTATTATTA
1 TTATTTATTATTA
*
51912246 TTATTTATTATTT
1 TTATTTATTATTA
51912259 TTAT
1 TTAT
51912263 CTTTATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TTATTTATTATTA
Found at i:51931276 original size:48 final size:48
Alignment explanation
Indices: 51931185--51931407 Score: 238
Period size: 48 Copynumber: 4.6 Consensus size: 48
51931175 GATCCACATA
* * * ** *
51931185 TCGATGCCATATCCCAGACATGGTCTT-CTACGA-AATCTTATATCAGCG
1 TCGATGCCATGTCCCAGACATGGTCTTAC-ACTAGCA-CACATATCAACG
*
51931233 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACG
* * * *
51931281 -CTGATGCCATGTCCTAGACTTGGTCTTACACT-GACTCACATATCAACA
1 TC-GATGCCATGTCCCAGACATGGTCTTACACTAG-CACACATATCAACG
* * * *
51931329 TCGATGCCATGTCCCAAACATGGTCTTACAGTGGCTCACATATCAACG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACG
*
51931377 CCGATGCCATGTCCCAGACATGGTCTTACAC
1 TCGATGCCATGTCCCAGACATGGTCTTACAC
51931408 GGGATCTCAT
Statistics
Matches: 149, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
47 2 0.01
48 143 0.96
49 4 0.03
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (48 bp):
TCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACG
Found at i:51931334 original size:96 final size:96
Alignment explanation
Indices: 51931186--51931407 Score: 286
Period size: 96 Copynumber: 2.3 Consensus size: 96
51931176 ATCCACATAT
* * ** * *
51931186 CGATGCCATATCCCAGACATGGTCTT-CTAC-GAAATCTTATATCAGCGTCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTAC-ACTG-ACTCACATATCAACATCGATGCCATGTCCCA
* *
51931249 GACATGGTCTTACACTAGCACACATATCAATGC
64 AACATGGTCTTACACTAGCACACATATCAACGC
* * *
51931282 TGATGCCATGTCCTAGACTTGGTCTTACACTGACTCACATATCAACATCGATGCCATGTCCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATATCAACATCGATGCCATGTCCCAAA
* * *
51931347 CATGGTCTTACAGTGGCTCACATATCAACGC
66 CATGGTCTTACACTAGCACACATATCAACGC
51931378 CGATGCCATGTCCCAGACATGGTCTTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACAC
51931408 GGGATCTCAT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
96 105 0.98
97 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCACATATCAACATCGATGCCATGTCCCAAA
CATGGTCTTACACTAGCACACATATCAACGC
Found at i:51931676 original size:48 final size:48
Alignment explanation
Indices: 51931613--51931792 Score: 209
Period size: 48 Copynumber: 3.8 Consensus size: 48
51931603 CACATATTGA
*
51931613 TGCCAATGCCATGTCCAAGACATGGTCTTACATGGGGTCTCATATCGG
1 TGCCAATGCCATGTCCAAGACATGGTCTTACACGGGGTCTCATATCGG
* * * * ** * *
51931661 TGCCGATGCCATGTCCCACACATGGTCTTATACGGGACCTCATCTCGA
1 TGCCAATGCCATGTCCAAGACATGGTCTTACACGGGGTCTCATATCGG
* * * * *
51931709 TGCCAATGCCATATCCTAGATATAGTCTTATACGGGGTCTCATATCGG
1 TGCCAATGCCATGTCCAAGACATGGTCTTACACGGGGTCTCATATCGG
*
51931757 TGCCGATGCCATGTCCCAA-ACATGGTCTTACACGGG
1 TGCCAATGCCATGT-CCAAGACATGGTCTTACACGGG
51931793 ACCTTATCTT
Statistics
Matches: 106, Mismatches: 25, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
48 103 0.97
49 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (48 bp):
TGCCAATGCCATGTCCAAGACATGGTCTTACACGGGGTCTCATATCGG
Found at i:51931780 original size:96 final size:96
Alignment explanation
Indices: 51931611--51931801 Score: 301
Period size: 96 Copynumber: 2.0 Consensus size: 96
51931601 CACACATATT
* * *
51931611 GATGCCAATGCCATGTCCAAGACATGGTCTTACATGGGGTCTCATATCGGTGCCGATGCCATGTC
1 GATGCCAATGCCATATCCAAGACATAGTCTTACACGGGGTCTCATATCGGTGCCGATGCCATGTC
* *
51931676 CCACACATGGTCTTATACGGGACCTCATCTC
66 CCAAACATGGTCTTACACGGGACCTCATCTC
* * *
51931707 GATGCCAATGCCATATCCTAGATATAGTCTTATACGGGGTCTCATATCGGTGCCGATGCCATGTC
1 GATGCCAATGCCATATCCAAGACATAGTCTTACACGGGGTCTCATATCGGTGCCGATGCCATGTC
*
51931772 CCAAACATGGTCTTACACGGGACCTTATCT
66 CCAAACATGGTCTTACACGGGACCTCATCT
51931802 TGAAATTTTG
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 86 1.00
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (96 bp):
GATGCCAATGCCATATCCAAGACATAGTCTTACACGGGGTCTCATATCGGTGCCGATGCCATGTC
CCAAACATGGTCTTACACGGGACCTCATCTC
Found at i:51935321 original size:2 final size:2
Alignment explanation
Indices: 51935309--51935350 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
51935299 AATAATCTTA
*
51935309 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51935351 CAATACATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51943851 original size:27 final size:27
Alignment explanation
Indices: 51943820--51943890 Score: 117
Period size: 26 Copynumber: 2.7 Consensus size: 27
51943810 TCATCTAATA
*
51943820 GGGCATAACAGTCATTTTATCACACAG
1 GGGCATAATAGTCATTTTATCACACAG
51943847 GGGCATAATAGTCA-TTTATCACACAG
1 GGGCATAATAGTCATTTTATCACACAG
*
51943873 AGGCATAATAGTCATTTT
1 GGGCATAATAGTCATTTT
51943891 GTCAATTAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
26 25 0.61
27 16 0.39
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (27 bp):
GGGCATAATAGTCATTTTATCACACAG
Found at i:51946432 original size:27 final size:27
Alignment explanation
Indices: 51946402--51946478 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
51946392 CTCATATTTG
* * *
51946402 TAGGCTAGCATTATTGAAATACCCCTA
1 TAGGGTAGAATTACTGAAATACCCCTA
* *
51946429 TAGGGTAGAATTACTGAAATGCCCCTG
1 TAGGGTAGAATTACTGAAATACCCCTA
**
51946456 TAGGGTAGAATTACCAAAATACC
1 TAGGGTAGAATTACTGAAATACC
51946479 ATTAGTTTAC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATACCCCTA
Found at i:51946594 original size:27 final size:26
Alignment explanation
Indices: 51946464--51946700 Score: 129
Period size: 27 Copynumber: 8.7 Consensus size: 26
51946454 TGTAGGGTAG
* **
51946464 AATTACCAAAATACCATT-AGTTTACAA
1 AATTACCAAAATACCCTTGA-TTT-GTA
* *
51946491 AATTATCAAAATA-CCTTCGACTTGTAA
1 AATTACCAAAATACCCTT-GATTTGT-A
* *
51946518 AATTACCAAAACACCCTCGATTTGTA
1 AATTACCAAAATACCCTTGATTTGTA
*
51946544 AAGTTACCAAAATACCCCTGATTTGTGA
1 AA-TTACCAAAATACCCTTGATTTGT-A
* * *
51946572 AATTACCGAAATACCCTTAATTTAGAA
1 AATTACCAAAATACCCTTGATTT-GTA
* * **
51946599 AATTACAAAAATACCATTGACTTTCAAAA
1 AATTACCAAAATACCCTTGA-TTT--GTA
* ** *
51946628 AATTA-TAGAAATACTATTGGTTTGTAA
1 AATTACCA-AAATACCCTTGATTTGT-A
* *
51946655 AATTACTAAAATACCCTTGGTTTGTA
1 AATTACCAAAATACCCTTGATTTGTA
* *
51946681 GATTTACCAAAACACCCTTG
1 -AATTACCAAAATACCCTTG
51946701 TAGGATGAAA
Statistics
Matches: 166, Mismatches: 31, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
26 7 0.04
27 124 0.75
28 17 0.10
29 18 0.11
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (26 bp):
AATTACCAAAATACCCTTGATTTGTA
Found at i:51946610 original size:54 final size:54
Alignment explanation
Indices: 51946464--51946613 Score: 144
Period size: 54 Copynumber: 2.8 Consensus size: 54
51946454 TGTAGGGTAG
* * * *
51946464 AATTACCAAAATACCATTAGTTTACAAAATTATCAAAATA-CCTTCGACTTGTAA
1 AATTACCAAAATACCCTTAATTTAGAAAATTA-CAAAATACCCCTCGACTTGTAA
* ** * * *
51946518 AATTACCAAAACACCCTCGATTT-GTAAAGTTACCAAAATACCCCT-GATTTGTGA
1 AATTACCAAAATACCCTTAATTTAG-AAAATTA-CAAAATACCCCTCGACTTGTAA
*
51946572 AATTACCGAAATACCCTTAATTTAGAAAATTACAAAAATACC
1 AATTACCAAAATACCCTTAATTTAGAAAATTAC-AAAATACC
51946614 ATTGACTTTC
Statistics
Matches: 76, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
53 1 0.01
54 71 0.93
55 4 0.05
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCCTTAATTTAGAAAATTACAAAATACCCCTCGACTTGTAA
Found at i:51946966 original size:27 final size:25
Alignment explanation
Indices: 51946936--51947022 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 25
51946926 GGAAGTTTTG
*
51946936 TACTGGTGACTATGTCACATTCACTGT
1 TACTGGTGGCTATG-CACATT-ACTGT
*
51946963 TACTGGTGGCTATGCGACAATTACTGA
1 TACTGGTGGCTATGC-AC-ATTACTGT
*
51946990 TACTGGTGGCTTTGCCACATTTACTGT
1 TACTGGTGGCTATG-CACA-TTACTGT
*
51947017 TTCTGG
1 TACTGG
51947023 CAGCTTTGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
26 2 0.04
27 45 0.88
28 4 0.08
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.37
Consensus pattern (25 bp):
TACTGGTGGCTATGCACATTACTGT
Found at i:51951979 original size:22 final size:22
Alignment explanation
Indices: 51951954--51951997 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
51951944 GCTATGATAG
51951954 CTTACTCTGTGTTTTATGTTAT
1 CTTACTCTGTGTTTTATGTTAT
51951976 CTTACTCTGTGTTTTATGTTAT
1 CTTACTCTGTGTTTTATGTTAT
51951998 TCTGTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.59
Consensus pattern (22 bp):
CTTACTCTGTGTTTTATGTTAT
Found at i:51961120 original size:2 final size:2
Alignment explanation
Indices: 51961113--51961142 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
51961103 GTTTAACTCT
51961113 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51961143 CACACATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51968583 original size:5 final size:5
Alignment explanation
Indices: 51968550--51968580 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
51968540 ATATCATGCA
*
51968550 TCATG TCATG TCATG TCATG TCATG TAATG T
1 TCATG TCATG TCATG TCATG TCATG TCATG T
51968581 AATAATAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (5 bp):
TCATG
Found at i:51968662 original size:26 final size:26
Alignment explanation
Indices: 51968633--51968690 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
51968623 TCAGATATAA
*
51968633 TCATTCATCTCAAAGGGGCATAACAG
1 TCATTCATCACAAAGGGGCATAACAG
* * * *
51968659 TCATTTTATCACATAGGGGCGTAATAG
1 TCA-TTCATCACAAAGGGGCATAACAG
51968686 TCATT
1 TCATT
51968691 TTATCAATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
TCATTCATCACAAAGGGGCATAACAG
Found at i:51972764 original size:40 final size:40
Alignment explanation
Indices: 51972709--51972918 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
51972699 AACATTGGAA
51972709 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51972749 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51972789 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
51972829 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
51972868 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
51972909 CTATATCCGG
1 ATATATCCGG
51972919 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:51980898 original size:40 final size:40
Alignment explanation
Indices: 51980843--51981052 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
51980833 AACATTGGAA
51980843 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51980883 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51980923 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
51980963 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
51981002 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
51981043 CTATATCCGG
1 ATATATCCGG
51981053 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:51983049 original size:40 final size:40
Alignment explanation
Indices: 51982994--51983203 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
51982984 AACATTGGAA
51982994 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51983034 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51983074 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
51983114 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
51983153 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
51983194 CTATATCCGG
1 ATATATCCGG
51983204 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:51984288 original size:40 final size:40
Alignment explanation
Indices: 51984233--51984325 Score: 186
Period size: 40 Copynumber: 2.3 Consensus size: 40
51984223 TTAGTATTGA
51984233 AGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
51984273 AGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
51984313 AGCCCGGATATAT
1 AGCCCGGATATAT
51984326 TTCCAATGTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
AGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
Found at i:51988240 original size:42 final size:42
Alignment explanation
Indices: 51988152--51988244 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
51988142 TAAGATTATG
* * *
51988152 TGTAAGACCAAATCTGGGATATGGCATCGATATGAGACTTCG
1 TGTAAGACCAAAGCTGGGATATGGCATCGATACGAGACTTCA
* *
51988194 TGTAAGACCATAGCTGGGCTATTGGCATCGATACGA-A-TTACA
1 TGTAAGACCAAAGCTGGGATA-TGGCATCGATACGAGACTT-CA
51988236 TGTAAGACC
1 TGTAAGACC
51988245 TAAGACTATA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
41 2 0.05
42 29 0.66
43 13 0.30
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (42 bp):
TGTAAGACCAAAGCTGGGATATGGCATCGATACGAGACTTCA
Found at i:51990038 original size:2 final size:2
Alignment explanation
Indices: 51990031--51990071 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
51990021 TTGTAATAGA
*
51990031 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AG AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51990072 TAGATTCATG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:52012613 original size:39 final size:39
Alignment explanation
Indices: 52012547--52012767 Score: 329
Period size: 39 Copynumber: 5.7 Consensus size: 39
52012537 TGTGTGAGAT
* *
52012547 TTATATTCGAGCTAAG-CCCGAAGGCATTCGTGCTGATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
* *
52012585 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
* * * *
52012624 TTATATCCGGGCTATGTCCTGAAGGTATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
* *
52012663 TTATATCCGGGCCATGTCCCGAAGGCATTCGTGCT-AGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGA-TG
52012702 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
52012741 TTATATCCGGGCTAAGTCCCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCA
52012768 ATTGTGTTGG
Statistics
Matches: 166, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
38 13 0.08
39 152 0.92
40 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
Found at i:52020544 original size:24 final size:24
Alignment explanation
Indices: 52020517--52020573 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
52020507 ATAAACATCC
52020517 ATAAATATGCTAAGTATTTGGGGT
1 ATAAATATGCTAAGTATTTGGGGT
52020541 ATAAATATGCTAAGTATTTGGGGT
1 ATAAATATGCTAAGTATTTGGGGT
52020565 ATAAATATG
1 ATAAATATG
52020574 TATAATTTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.37, C:0.04, G:0.23, T:0.37
Consensus pattern (24 bp):
ATAAATATGCTAAGTATTTGGGGT
Found at i:52022337 original size:6 final size:6
Alignment explanation
Indices: 52022328--52022395 Score: 86
Period size: 6 Copynumber: 11.5 Consensus size: 6
52022318 AATAAAATTG
*
52022328 AAATGA AAATAA AAATAA AAATAA AAATAA AAATAA AAAT-A AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
* *
52022375 ATAA-AT AAATAA GAATAA AAA
1 A-AATAA AAATAA AAATAA AAA
52022396 GATAGGAGGA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
5 7 0.13
6 45 0.83
7 2 0.04
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:52022349 original size:18 final size:17
Alignment explanation
Indices: 52022308--52022395 Score: 88
Period size: 18 Copynumber: 4.9 Consensus size: 17
52022298 TATGTCTTTT
*
52022308 AAAATAAAATAATAAAATT
1 AAAATAAAAT-A-AAAATA
*
52022327 GAAATGAAAATAAAAATA
1 AAAAT-AAAATAAAAATA
52022345 AAAATAAAAATAAAAATA
1 AAAAT-AAAATAAAAATA
52022363 AAAATAAAATAAATAA-A
1 AAAATAAAATAAA-AATA
*
52022380 TAAATAAGAATAAAAA
1 AAAATAA-AATAAAAA
52022396 GATAGGAGGA
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
17 17 0.28
18 34 0.56
19 5 0.08
20 5 0.08
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (17 bp):
AAAATAAAATAAAAATA
Found at i:52024477 original size:28 final size:28
Alignment explanation
Indices: 52024409--52024497 Score: 146
Period size: 27 Copynumber: 3.2 Consensus size: 28
52024399 GAGGAAGCGT
52024409 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
52024436 TCTGGTGGCCCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
52024464 TCTGGTGGCTCTGCCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
52024491 TCTGGTG
1 TCTGGTG
52024498 ATTTTGTCAC
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
27 41 0.72
28 16 0.28
ACGTcount: A:0.18, C:0.26, G:0.24, T:0.33
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:52024508 original size:27 final size:26
Alignment explanation
Indices: 52024407--52024521 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
52024397 TGGAGGAAGC
*
52024407 GTTCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGACTCTGCCAC-AATATCT
* * *
52024434 GATCTGGTGGCCCTGCCACAAATATCT
1 GTTCTGGTGACTCTGCCAC-AATATCT
*
52024461 GTTTCTGGTGGCTCTGCCACAATATCT
1 G-TTCTGGTGACTCTGCCACAATATCT
* * *
52024488 GTATCTGGTGATTTTGTCACAATATCT
1 GT-TCTGGTGACTCTGCCACAATATCT
52024515 GTTCTGG
1 GTTCTGG
52024522 CGACCATGCT
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.08
27 56 0.72
28 16 0.21
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGACTCTGCCACAATATCT
Found at i:52024515 original size:54 final size:54
Alignment explanation
Indices: 52024407--52024521 Score: 153
Period size: 55 Copynumber: 2.1 Consensus size: 54
52024397 TGGAGGAAGC
*
52024407 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCCCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACCCTGCCACAAATATCT
*** *
52024461 GTTTCTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGATTTTGTCAC-AATATCT
1 G-TTCTGGTGGCTCTGCCACAAATATCTG-ATCTGGTGACCCTGCCACAAATATCT
52024515 GTTCTGG
1 GTTCTGG
52024522 CGACCATGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
53 6 0.11
54 17 0.31
55 31 0.57
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (54 bp):
GTTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACCCTGCCACAAATATCT
Found at i:52031478 original size:13 final size:13
Alignment explanation
Indices: 52031460--52031484 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
52031450 GAAAAAAGGA
52031460 CACGACCGTGTGC
1 CACGACCGTGTGC
52031473 CACGACCGTGTG
1 CACGACCGTGTG
52031485 ACATGATTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (13 bp):
CACGACCGTGTGC
Found at i:52034094 original size:47 final size:45
Alignment explanation
Indices: 52033990--52034296 Score: 232
Period size: 47 Copynumber: 6.6 Consensus size: 45
52033980 TACCCGTGCT
* * *
52033990 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-TAGG-C
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTAGGCC
* *
52034034 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGT--AGGCC
52034081 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGT--GCC
1 GATGCATGTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTAGGCC
* *
52034127 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGTATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTA-GGCC
* * * * * *
52034175 GATGCATGTCCAAGACATGTCTTACACTAGCCCT-TGTCTGGATGCT
1 GATGCATGTCCCAGACATGTCTTACACT-G-GCTATCTCTGTAGGCC
* * * * * * *
52034221 GATATCATGTCTCAAACATGGTCTTACACTGACTCTAGTAATGT-GGCC
1 GAT-GCATGTCCCAGACAT-GTCTTACACTGGCTAT-CT-CTGTAGGCC
*
52034269 GAAGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
52034297 AGCGCACAAA
Statistics
Matches: 214, Mismatches: 28, Indels: 40
0.76 0.10 0.14
Matches are distributed among these distances:
43 5 0.02
44 29 0.14
45 5 0.02
46 42 0.20
47 85 0.40
48 36 0.17
49 4 0.02
50 8 0.04
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTAGGCC
Found at i:52034192 original size:94 final size:93
Alignment explanation
Indices: 52033940--52034299 Score: 342
Period size: 94 Copynumber: 3.8 Consensus size: 93
52033930 ATATATTGCT
* * *
52033940 GATGTCATGTCCCAAACATGGTCTTACACTGGCTCTCATA-TACCCGTGCTGATGCATGTCCCAG
1 GATGTCATGTCCCAAACATGGTCTTACACTGGCTATCATAGTA--TG-GCCGATGCATGTCCCAG
* *
52034004 ACATGTCTTACACTAGCA-CAACTCT-TAGGC
63 ACATGTCTTACACTAGCACCATCTCTGT-GCC
* * * *
52034034 GATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGA-GGCCGATGCATGTCCCAG
1 GATGTCATGTCCCAAACATGGTCTTACACTGGCTATCAT-AGT--ATGGCCGATGCATGTCCCAG
*
52034095 ACATGTCTTACACTGGCACTCATCTCTGTGCC
63 ACATGTCTTACACTAGCAC-CATCTCTGTGCC
* * * *
52034127 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCAAGACA
1 GATGTCATGTCCCAAACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGACA
* * *
52034192 TGTCTTACACTAGC-CCTTGTCTGGATGCT
66 TGTCTTACACTAGCACCATCTCT-G-TGCC
* * * * * * *
52034221 GATATCATGTCTCAAACATGGTCTTACACTGACTCT-AGTAATGTGGCCGAAGCATGTCCCAGAC
1 GATGTCATGTCCCAAACATGGTCTTACACTGGCTATCA-TAGTATGGCCGATGCATGTCCCAGAC
52034285 ATGTCTTACACTAGC
65 ATGTCTTACACTAGC
52034300 GCACAAATCA
Statistics
Matches: 223, Mismatches: 29, Indels: 28
0.80 0.10 0.10
Matches are distributed among these distances:
91 34 0.15
92 22 0.10
93 28 0.13
94 118 0.53
95 20 0.09
96 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (93 bp):
GATGTCATGTCCCAAACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCACCATCTCTGTGCC
Found at i:52034230 original size:141 final size:136
Alignment explanation
Indices: 52033936--52034299 Score: 346
Period size: 141 Copynumber: 2.6 Consensus size: 136
52033926 TGGGATATAT
* * *
52033936 TGCTGATGTCATGTCCCAAACATGGTCTTACACTGGCTCTCATATACCCGTGCTGATGCATGTCC
1 TGCTGAT-TCATGTCCCAAACATGGTCTTACACTGGCACTCAT-T--CTGTGCCGATGCATGTCC
* * * *
52034001 CAGACATGTCTTACACTAGCACAACTCTTAGGCGATGCGTGTCCCAGACACGTCTTACACTGGCT
62 CAGACATGTCTTACACTAGCACAACTCATAGGCGATGCATGTCCAAGACACGTCTTACACTGCCT
52034066 ATCTCTGTCGA
127 ATCTCTG-CGA
* * * *
52034077 GGCCGATGCATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTGTGCCGATGCCATGTCCCA
1 TGCTGATTCATGTCCCAAACATGGTCTTACACTGGCACTCAT-TCTGTGCCGATG-CATGTCCCA
* * *
52034141 GACATGGTCTTACACTGGCTATCATAGT-AT-GGCTGATGCATGTCCAAGACATGTCTTACACTA
64 GACAT-GTCTTACACTAGC-A-CA-ACTCATAGGC-GATGCATGTCCAAGACACGTCTTACACT-
*
52034204 GCCCT-TGTCTG-GA
123 G-CCTATCTCTGCGA
* ** *
52034217 TGCTGATATCATGTCTCAAACATGGTCTTACACT-G-ACTCTAGTAATGTGGCCGAAGCATGTCC
1 TGCTGAT-TCATGTCCCAAACATGGTCTTACACTGGCACTC-A-TTCTGT-GCCGATGCATGTCC
52034280 CAGACATGTCTTACACTAGC
62 CAGACATGTCTTACACTAGC
52034300 GCACAAATCA
Statistics
Matches: 185, Mismatches: 25, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
137 9 0.05
138 14 0.08
139 31 0.17
140 40 0.22
141 64 0.35
142 25 0.14
143 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (136 bp):
TGCTGATTCATGTCCCAAACATGGTCTTACACTGGCACTCATTCTGTGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCACAACTCATAGGCGATGCATGTCCAAGACACGTCTTACACTGCCTATCT
CTGCGA
Found at i:52034673 original size:30 final size:30
Alignment explanation
Indices: 52034639--52034696 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
52034629 AAATTTACAT
* *
52034639 CTTTGGTAAAATAACCATTTTGCCCCTAGA
1 CTTTGGCAAAATAACCATTTTACCCCTAGA
*
52034669 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATAACCATTTTACCCCTA
52034697 TGCCCGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATAACCATTTTACCCCTAGA
Found at i:52041737 original size:26 final size:27
Alignment explanation
Indices: 52041681--52041740 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 27
52041671 ACCTCGGTTT
* * * *
52041681 GTAAAATTACTAAAATACCCTTGTAGT
1 GTAAAATTACCAAAATACCCCTATAGG
*
52041708 GTAAAATTACCGAAA-ACCCCTATAGG
1 GTAAAATTACCAAAATACCCCTATAGG
52041734 GTAAAAT
1 GTAAAAT
52041741 GACTGTTTGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 15 0.54
27 13 0.46
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.27
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTATAGG
Found at i:52044562 original size:25 final size:25
Alignment explanation
Indices: 52044534--52044584 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
52044524 AATACCAAAA
* *
52044534 TACCCTCTAGGGTAAAATGACT-ATT
1 TACCCTCGAAGGT-AAATGACTGATT
52044559 TACCCTCGAAGGTAAATGACTGATT
1 TACCCTCGAAGGTAAATGACTGATT
52044584 T
1 T
52044585 GTCTGTGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (25 bp):
TACCCTCGAAGGTAAATGACTGATT
Found at i:52046884 original size:47 final size:47
Alignment explanation
Indices: 52046831--52046958 Score: 177
Period size: 47 Copynumber: 2.7 Consensus size: 47
52046821 CACAATCGAT
*
52046831 AAGTACCTATACCATGGCCCGTAGCAAAATCAAGGTAACT-TATCCCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCT-TCCCG
* * *
52046878 AAGTACCTATACCATGGCCTGTAGCCAAATCAAGGTAACTCCTTTCTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACT-CTTCCCG
* *
52046926 AAATACCTATATCATGGCCCGTAGCCAAATCAA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAA
52046959 TGTATCATTC
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
47 38 0.53
48 33 0.46
49 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCTTCCCG
Found at i:52057488 original size:18 final size:17
Alignment explanation
Indices: 52057465--52057501 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
52057455 GAATACCTTC
*
52057465 TTTTCCCTTCTCTGCTCT
1 TTTTCCC-TCTCTACTCT
52057483 TTTTCCCTCTCTACTCT
1 TTTTCCCTCTCTACTCT
52057500 TT
1 TT
52057502 CGGCTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.03, C:0.38, G:0.03, T:0.57
Consensus pattern (17 bp):
TTTTCCCTCTCTACTCT
Found at i:52061436 original size:41 final size:41
Alignment explanation
Indices: 52061391--52061508 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
52061381 TGAAAGATAA
52061391 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
52061432 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
52061462 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
52061503 ATGTAG
1 ATGTAG
52061509 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:52061447 original size:71 final size:71
Alignment explanation
Indices: 52061359--52061522 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
52061349 GAGATGTATC
52061359 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
52061424 AGGACA
66 AGGACA
52061430 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
52061495 AGGACA
66 AGGACA
52061501 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
52061523 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:52073199 original size:40 final size:40
Alignment explanation
Indices: 52073144--52073353 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
52073134 AACATTGGAA
52073144 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
52073184 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
52073224 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
52073264 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
52073303 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
52073344 CTATATCCGG
1 ATATATCCGG
52073354 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:52078469 original size:43 final size:43
Alignment explanation
Indices: 52078401--52078512 Score: 197
Period size: 43 Copynumber: 2.6 Consensus size: 43
52078391 CCGGCGTTAC
* *
52078401 GCCTGCTAGGCACGAAGGCCTGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
52078444 GCCTACTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
52078487 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
52078513 TAATACCAGT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.30, C:0.32, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:52078553 original size:38 final size:38
Alignment explanation
Indices: 52078505--52078610 Score: 140
Period size: 38 Copynumber: 2.8 Consensus size: 38
52078495 GGCACGAAGG
* * * * *
52078505 CCCGAATATAATACCAGTACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
52078543 CCTGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
**
52078581 CCCGGATATTTTACCAGCACGAAGCCTGCG
1 CCCGGATATAATACCAGCACGAAGCCTGCG
52078611 AGTCTTTAAG
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Done.