Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 175 of 335
Found at i:52452261 original size:27 final size:26
Alignment explanation
Indices: 52452213--52452371 Score: 167
Period size: 27 Copynumber: 5.9 Consensus size: 26
52452203 GCAAGGCTGC
* *
52452213 CAGATATTGTGAC-GAAGTCACCAGACA
1 CAGATATTGTGGCAG-AGCCACCAGA-A
52452240 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
52452266 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAA
* * *
52452293 CAGATAATTGTGGCATAGCCACTAGGA
1 CAGAT-ATTGTGGCAGAGCCACCAGAA
* *
52452320 CAGATATATGTGGTAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAA
* *
52452347 CAAATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
52452372 GATGCTTCCT
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
26 10 0.09
27 97 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:52452304 original size:54 final size:54
Alignment explanation
Indices: 52452231--52452371 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 54
52452221 GTGACGAAGT
* *
52452231 CACCAGACACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGA-TCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* * *
52452285 CACCAGATCAGATAATTGTGGCATAGCCACTAGGACAGATATATGTGGTAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
52452339 CACCAGATCAAATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
52452372 GATGCTTCCT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 5 0.06
54 74 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:52452504 original size:26 final size:27
Alignment explanation
Indices: 52452475--52452550 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
52452465 CAAAATTAAC
* *
52452475 CCTAGGGGTATAACGGTAATTTTGCA-
1 CCTAGGGGTATAACAGTAATTTTCCAT
*
52452501 CCTAGAGGTATAACAGTAATTTTCCAT
1 CCTAGGGGTATAACAGTAATTTTCCAT
* *
52452528 CCATAGGGGTATTATAGTAATTT
1 CC-TAGGGGTATAACAGTAATTT
52452551 AGCTACTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.55
27 2 0.05
28 17 0.40
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATAACAGTAATTTTCCAT
Found at i:52452809 original size:16 final size:15
Alignment explanation
Indices: 52452788--52452817 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
52452778 AAAATACCTA
52452788 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
52452804 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
52452818 CCAATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:52454002 original size:26 final size:26
Alignment explanation
Indices: 52453971--52454078 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
52453961 TGAAATGCCC
*
52453971 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
52453997 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
52454023 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
52454049 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
52454075 ATCA
1 ATCA
52454079 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:52455658 original size:25 final size:25
Alignment explanation
Indices: 52455599--52455661 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
52455589 GACCCACAAC
* * *
52455599 TTGTGTGAGCATACCAATTTATAGC
1 TTGTGTGAGCATACCAATCTACAGA
* * *
52455624 TCGTGAGAGCATACCGATCTACAGA
1 TTGTGTGAGCATACCAATCTACAGA
52455649 TTGTGTGAGCATA
1 TTGTGTGAGCATA
52455662 TATACCGATT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (25 bp):
TTGTGTGAGCATACCAATCTACAGA
Found at i:52455714 original size:54 final size:54
Alignment explanation
Indices: 52455609--52455715 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 54
52455599 TTGTGTGAGC
* * * * *
52455609 ATACCAATTTATAGCTCGTGAGAGCATACCGATCTACAGATTGTGTGAGCATAT
1 ATACCAATTTACAGCTCATGAGAGCATACCGATCTACAGATCGAGTAAGCATAT
* * * *
52455663 ATACCGATTTACAGCTCATGATAGCATACCGATCTATAGCTCGAGTAAGCATA
1 ATACCAATTTACAGCTCATGAGAGCATACCGATCTACAGATCGAGTAAGCATA
52455716 CATGTTCACA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (54 bp):
ATACCAATTTACAGCTCATGAGAGCATACCGATCTACAGATCGAGTAAGCATAT
Found at i:52456868 original size:20 final size:20
Alignment explanation
Indices: 52456835--52456873 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
52456825 ACCATATGAT
52456835 TTGGCTTGTGTTATAGTATC
1 TTGGCTTGTGTTATAGTATC
*
52456855 TTGG-TTGTGATTATGGTAT
1 TTGGCTTGTG-TTATAGTAT
52456874 TTTGAATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.15, C:0.05, G:0.28, T:0.51
Consensus pattern (20 bp):
TTGGCTTGTGTTATAGTATC
Found at i:52458817 original size:20 final size:20
Alignment explanation
Indices: 52458792--52458831 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
52458782 GCATATACCA
52458792 AAATTCATTCATAATCTCAT
1 AAATTCATTCATAATCTCAT
52458812 AAATTCATTCATAATCTCAT
1 AAATTCATTCATAATCTCAT
52458832 CCATAACCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (20 bp):
AAATTCATTCATAATCTCAT
Found at i:52459459 original size:42 final size:43
Alignment explanation
Indices: 52459384--52459510 Score: 141
Period size: 44 Copynumber: 2.9 Consensus size: 43
52459374 TTATATGTAA
* * * *
52459384 TCAAATATCAATGCCACTGTCCCAGACAGGGTCTTACACGAA-G
1 TCAAATAT-GATGCCAATGTCCCAGACATGGTCTTACACGAATC
*
52459427 TCAAATATGATGCCAATGTCCCAAACATGGTCTTACACGTAAATC
1 TCAAATATGATGCCAATGTCCCAGACATGGTCTTACACG--AATC
* * *
52459472 TCAAAT-CGATGCCAACGTCCCAGACTTGGTCTTACACGA
1 TCAAATATGATGCCAATGTCCCAGACATGGTCTTACACGA
52459511 TAACTCATAT
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
42 28 0.39
43 8 0.11
44 30 0.42
45 6 0.08
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
TCAAATATGATGCCAATGTCCCAGACATGGTCTTACACGAATC
Found at i:52459492 original size:44 final size:42
Alignment explanation
Indices: 52459351--52459510 Score: 137
Period size: 42 Copynumber: 3.7 Consensus size: 42
52459341 AACTCGTACA
** * * * *
52459351 ATGCCAACGTCCCAGATGTGATCTTATATGTAA-TCAAATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AACTCAAATA-CG
* * *
52459394 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAAGTCAAATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAACTCAAATACG
* *
52459436 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCAACGTCCCAGACATGGTCTTACACG--AA-CTCAAATACG
*
52459480 ATGCCAACGTCCCAGACTTGGTCTTACACGA
1 ATGCCAACGTCCCAGACATGGTCTTACACGA
52459511 TAACTCATAT
Statistics
Matches: 95, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
42 30 0.32
43 29 0.31
44 30 0.32
45 6 0.06
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAACTCAAATACG
Found at i:52467098 original size:40 final size:40
Alignment explanation
Indices: 52467035--52467215 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
52467025 ATTCGGATTG
52467035 ATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
52467074 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
52467114 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
52467154 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
* **
52467194 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
52467216 TACTTGGTTT
Statistics
Matches: 129, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
39 29 0.22
40 100 0.78
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:52479539 original size:42 final size:42
Alignment explanation
Indices: 52479480--52479562 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
52479470 TGGCTATGTA
* *
52479480 TGATGGTGGTTCGATAATAGCTGATTTGAAAGCAAGATCGTC
1 TGATGATGGTTCGATAATAGCTGAATTGAAAGCAAGATCGTC
52479522 TGATGATGGTTCGATAATAGCTGAATTGAAAGCAAGATCGT
1 TGATGATGGTTCGATAATAGCTGAATTGAAAGCAAGATCGT
52479563 TATTTATTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.30
Consensus pattern (42 bp):
TGATGATGGTTCGATAATAGCTGAATTGAAAGCAAGATCGTC
Found at i:52482393 original size:43 final size:43
Alignment explanation
Indices: 52482330--52482415 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
52482320 TATGTGATTC
*
52482330 CGATATGTGTTTACGAGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 CGATATGTGGTTACGAGTAAGACCAC-GTCTGGGAC-GTTGGCAT
**
52482373 CGATATGTGGTTACTTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATGTGGTTACGAGTAAGACCACGTCTGGGACGTTGGCAT
52482416 TGTACGATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 36 0.95
44 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (43 bp):
CGATATGTGGTTACGAGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:52485888 original size:30 final size:30
Alignment explanation
Indices: 52485843--52485901 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
52485833 GCCTTCCCTT
*
52485843 CCCATTATTGATGCTTAAAGGGAAGGATAA
1 CCCATGATTGATGCTTAAAGGGAAGGATAA
*
52485873 CCCATGATTGGTGCTTAAAGGGAAGGATA
1 CCCATGATTGATGCTTAAAGGGAAGGATA
52485902 GCGACTTGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (30 bp):
CCCATGATTGATGCTTAAAGGGAAGGATAA
Found at i:52487940 original size:39 final size:39
Alignment explanation
Indices: 52487882--52488004 Score: 140
Period size: 39 Copynumber: 3.2 Consensus size: 39
52487872 TATCATATCC
* **
52487882 AGAATACGGAGGTATATTTTGCTGAAAACTGCTTGAGCG
1 AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
* * * **
52487921 AGAATAGGGAGATGGATTTTGCTTAAAACTGGC-AGATTG
1 AGAATACGGAGATGGATTTTGCTGAAAACT-GCTTGAGCG
**
52487960 AGAATACGGAGATGGATCCTGCTGAAAACTGCTTGAGCG
1 AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
52487999 AGAATA
1 AGAATA
52488005 AGACTTCGGG
Statistics
Matches: 67, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
38 2 0.03
39 63 0.94
40 2 0.03
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (39 bp):
AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
Found at i:52498202 original size:14 final size:15
Alignment explanation
Indices: 52498183--52498215 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
52498173 ATATTTAACT
52498183 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
52498197 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
52498212 TGTT
1 TGTT
52498216 GATATTCCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.18, C:0.09, G:0.15, T:0.58
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:52501582 original size:14 final size:15
Alignment explanation
Indices: 52501563--52501592 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
52501553 GTTTATTATA
52501563 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
52501577 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
52501592 T
1 T
52501593 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:52501831 original size:31 final size:31
Alignment explanation
Indices: 52501777--52501837 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
52501767 ATTATATGCA
* *
52501777 TTTTATATATAAGAAATATAATTATTAAAAG
1 TTTTATATATAAGAAATAGAATTAATAAAAG
*
52501808 TTTTATA-ATATGAAATAAGAATTAATAAAA
1 TTTTATATATAAGAAAT-AGAATTAATAAAA
52501838 CAAAAAGGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 8 0.31
31 18 0.69
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (31 bp):
TTTTATATATAAGAAATAGAATTAATAAAAG
Found at i:52504446 original size:38 final size:38
Alignment explanation
Indices: 52504353--52504495 Score: 155
Period size: 38 Copynumber: 3.7 Consensus size: 38
52504343 GAATCTAGTC
* * * *
52504353 ACCAGCACAAAACCTGCGGGACTTTAAGTTCAGATATAAT
1 ACCAGCACTAAGCCTGCGGGACTTTAA--CCGGATATAAT
* *
52504393 ACCAACACTAGGCCTGCGGGACTTTAACCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGACTTTAACCGGATATAAT
*
52504431 ACCAGCACGAAGCCTGCGGGA-TTTAACTCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGACTTTAAC-CGGATATAAT
* *
52504469 TCCAGCA-TATAGCCTGCGGGTCTTTAA
1 ACCAGCACTA-AGCCTGCGGGACTTTAA
52504496 GCCTAGATAC
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
37 7 0.08
38 53 0.60
39 5 0.06
40 23 0.26
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (38 bp):
ACCAGCACTAAGCCTGCGGGACTTTAACCGGATATAAT
Found at i:52504488 original size:76 final size:78
Alignment explanation
Indices: 52504353--52504495 Score: 184
Period size: 76 Copynumber: 1.9 Consensus size: 78
52504343 GAATCTAGTC
* *
52504353 ACCAGCACAAAACCTGCGGGACTTTAAGTTCAGATATAATACCAACACTAGGCCTGCGGGACTTT
1 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAATACCAACACTAAGCCTGCGGGACTTT
52504418 AACCGGATATAAT
66 AACCGGATATAAT
* * * * * *
52504431 ACCAGCACGAAGCCTGCGGGA-TTTAA-CTCGGATATAATTCCAGCA-TATAGCCTGCGGGTCTT
1 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAATACCAACACTA-AGCCTGCGGGACTT
52504493 TAA
65 TAA
52504496 GCCTAGATAC
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
75 2 0.04
76 30 0.54
77 5 0.09
78 19 0.34
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (78 bp):
ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAATACCAACACTAAGCCTGCGGGACTTT
AACCGGATATAAT
Found at i:52506982 original size:43 final size:43
Alignment explanation
Indices: 52506933--52507110 Score: 207
Period size: 43 Copynumber: 4.2 Consensus size: 43
52506923 GCTTTGGGCC
* * *
52506933 AGCAGGCTATAATGCCGGTGAGATAATATCGGGCTTCGAGCCT
1 AGCAGGCTATAATGCCGGTGAAATAATATCAGGCTTCAAGCCT
* * **
52506976 AGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCAAGTAT
1 AGCAGGCTATAATGCCGGTGAAATAATATCAGGCTTCAAGCCT
** * * *
52507019 AGCAGGCT-TCGTGCAGGTGAGATAATATCAGGCTTCGAGCCT
1 AGCAGGCTATAATGCCGGTGAAATAATATCAGGCTTCAAGCCT
* *
52507061 AGCTA-GTTATAATGCCGGTGAAATGATATCAGGCTTCAAGCCT
1 AGC-AGGCTATAATGCCGGTGAAATAATATCAGGCTTCAAGCCT
52507104 AGCAGGC
1 AGCAGGC
52507111 GAAATGTCAG
Statistics
Matches: 110, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
42 31 0.28
43 79 0.72
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (43 bp):
AGCAGGCTATAATGCCGGTGAAATAATATCAGGCTTCAAGCCT
Found at i:52507038 original size:85 final size:85
Alignment explanation
Indices: 52506949--52507110 Score: 263
Period size: 85 Copynumber: 1.9 Consensus size: 85
52506939 CTATAATGCC
* *
52506949 GGTGAGATAATATCGGGCTTCGAGCCTAGC-AGGCTATAATGCCGGTGAAATGATATCGGGCTTC
1 GGTGAGATAATATCAGGCTTCGAGCCTAGCTA-GCTATAATGCCGGTGAAATGATATCAGGCTTC
*
52507013 AAGTATAGCAGGCTTCGTGCA
65 AAGCATAGCAGGCTTCGTGCA
*
52507034 GGTGAGATAATATCAGGCTTCGAGCCTAGCTAGTTATAATGCCGGTGAAATGATATCAGGCTTCA
1 GGTGAGATAATATCAGGCTTCGAGCCTAGCTAGCTATAATGCCGGTGAAATGATATCAGGCTTCA
*
52507099 AGCCTAGCAGGC
66 AGCATAGCAGGC
52507111 GAAATGTCAG
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
85 70 0.99
86 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (85 bp):
GGTGAGATAATATCAGGCTTCGAGCCTAGCTAGCTATAATGCCGGTGAAATGATATCAGGCTTCA
AGCATAGCAGGCTTCGTGCA
Found at i:52510670 original size:30 final size:30
Alignment explanation
Indices: 52510634--52510734 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
52510624 GACAAGATTG
* * *
52510634 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
52510664 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
52510692 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
52510721 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
52510735 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:52510746 original size:29 final size:28
Alignment explanation
Indices: 52510663--52510738 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
52510653 AAAATTGTAC
* *
52510663 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
52510691 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
52510720 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
52510739 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:52523796 original size:22 final size:24
Alignment explanation
Indices: 52523746--52523797 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
52523736 ATGTTGTTCC
52523746 TTTTA-TTTTCATTTAAGACTACT
1 TTTTATTTTTCATTTAAGACTACT
52523769 TTTTATTTTTC-TTTAAG-CTTA-T
1 TTTTATTTTTCATTTAAGAC-TACT
52523791 TTTTATT
1 TTTTATT
52523798 AGGTTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 9 0.33
23 13 0.48
24 5 0.19
ACGTcount: A:0.21, C:0.10, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTTATTTTTCATTTAAGACTACT
Found at i:52528040 original size:40 final size:40
Alignment explanation
Indices: 52527863--52528028 Score: 230
Period size: 40 Copynumber: 4.2 Consensus size: 40
52527853 AACCCAAGTA
* *
52527863 CCTTCGGGATTTAG-CCGGATATAGCAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
*
52527902 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCCCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
*
52527942 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * *
52527982 CCTTC-GGATCTTAGTCCGGATGTAGTC-ACTAGCACAAATG
1 CCTTCGGGA-CTTAGCCCGGATATAG-CAACTCGCACAAATG
52528022 CCTTCGG
1 CCTTCGG
52528029 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 16 0.14
40 96 0.84
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:52534424 original size:23 final size:22
Alignment explanation
Indices: 52534393--52534438 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 22
52534383 CTGTCTAGCT
52534393 TCATCATTCTGATTACTAGCAA
1 TCATCATTCTGATTACTAGCAA
52534415 TCATCCATTCTGATTACTAGCAA
1 TCAT-CATTCTGATTACTAGCAA
52534438 T
1 T
52534439 AGGTTGAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (22 bp):
TCATCATTCTGATTACTAGCAA
Found at i:52536012 original size:39 final size:39
Alignment explanation
Indices: 52535949--52536086 Score: 199
Period size: 39 Copynumber: 3.5 Consensus size: 39
52535939 ATTCCAAACC
* * *
52535949 CAAATACCTTCGGGATTTAG-CCGGATATAGCAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATATAGCAACTAGCA
52535988 CAAATGCCTTCGGACTTAGCCCGGATATAGCAACTAGCA
1 CAAATGCCTTCGGACTTAGCCCGGATATAGCAACTAGCA
52536027 CAAATGCCTTCGGACTTAGTCCCGGATATAGTC-ACTAGCA
1 CAAATGCCTTCGGACTTAG-CCCGGATATAG-CAACTAGCA
52536067 CAAATGCCTTCGGATCTTAG
1 CAAATGCCTTCGGA-CTTAG
52536087 TCTGGTTATC
Statistics
Matches: 92, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
38 7 0.08
39 47 0.51
40 32 0.35
41 6 0.07
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATATAGCAACTAGCA
Found at i:52540839 original size:29 final size:29
Alignment explanation
Indices: 52540806--52540879 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
52540796 CCTTCGAGCT
52540806 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
52540835 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
52540864 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
52540880 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:52540840 original size:58 final size:58
Alignment explanation
Indices: 52540747--52540879 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
52540737 ATACTCGATT
* * * * *
52540747 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
52540805 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
52540863 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
52540880 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:52545072 original size:68 final size:68
Alignment explanation
Indices: 52544974--52545131 Score: 280
Period size: 68 Copynumber: 2.3 Consensus size: 68
52544964 TTCACTTGGA
* * *
52544974 ATCACTCATGCGATCTAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
52545039 CGT
66 CGT
*
52545042 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
52545107 CGT
66 CGT
52545110 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
52545132 TATATAGTAT
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 86 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:52547258 original size:27 final size:27
Alignment explanation
Indices: 52547120--52547261 Score: 96
Period size: 27 Copynumber: 5.3 Consensus size: 27
52547110 TACACATACA
* *
52547120 AGGGTATTTTGGTAATTTCACAAAT-T
1 AGGGTATTTCGGTAATTTCACAAATCG
* *
52547146 AGGGATATATCGGTAATTTTACAAATC-
1 AGGG-TATTTCGGTAATTTCACAAATCG
* * *
52547173 AGGGGTATCTCGGTAAATTT-ACAAGTTG
1 A-GGGTATTTCGGT-AATTTCACAAATCG
* *** *
52547201 A-GGTATTTTGGTAATTTTGTAAA-CT
1 AGGGTATTTCGGTAATTTCACAAATCG
*
52547226 AGGGGTATTTCGATAATTTCACAAATCG
1 A-GGGTATTTCGGTAATTTCACAAATCG
52547254 AGGGTATT
1 AGGGTATT
52547262 AACGACCCTA
Statistics
Matches: 88, Mismatches: 19, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
25 6 0.07
26 15 0.17
27 56 0.64
28 11 0.12
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTCACAAATCG
Found at i:52550697 original size:69 final size:70
Alignment explanation
Indices: 52550565--52550697 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
52550555 TAGTTTATTA
* * * *
52550565 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
52550630 CTTAG
66 CTTAG
52550635 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
52550698 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:52552068 original size:47 final size:47
Alignment explanation
Indices: 52552017--52552311 Score: 464
Period size: 47 Copynumber: 6.3 Consensus size: 47
52552007 ACAAGATATG
*
52552017 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
52552064 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
52552111 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * *
52552158 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
52552205 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * * *
52552252 TATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
52552299 TAAATGTGATAAG
1 TATATGTGATAAG
52552312 TCCCGAAGGG
Statistics
Matches: 230, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 230 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
Found at i:52554772 original size:40 final size:40
Alignment explanation
Indices: 52554697--52555082 Score: 517
Period size: 40 Copynumber: 9.7 Consensus size: 40
52554687 AGGTCTCGAC
52554697 GATG-ATCCGGGCTAAGCCCC-AAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
52554735 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* **
52554775 GATGTATCCGGGATAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
** ** *
52554815 GATGTATCCGGAATAAGTTCTGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
52554855 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
*
52554895 GATGTATCCGGGCCAAGCCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
** **
52554935 GATGTATCCGGAATAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* ***
52554975 GATGTATCCGGGATAAATTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* * * * *
52555015 GATATATCCGTGCTAAACCCCGAAGAGCATTCATGCTGGT
1 GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
* * * *
52555055 GTTATATCC-GGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGCCCCGAAGAGCA
52555083 ATCATGCTGG
Statistics
Matches: 316, Mismatches: 30, Indels: 3
0.91 0.09 0.01
Matches are distributed among these distances:
38 4 0.01
39 31 0.10
40 281 0.89
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGT
Found at i:52557270 original size:69 final size:70
Alignment explanation
Indices: 52557138--52557270 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
52557128 TAGTTTATTA
* * * *
52557138 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
52557203 CTTAG
66 CTTAG
52557208 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
52557271 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 36 0.61
70 23 0.39
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:52558643 original size:47 final size:47
Alignment explanation
Indices: 52558592--52558886 Score: 464
Period size: 47 Copynumber: 6.3 Consensus size: 47
52558582 ACAAGATATG
*
52558592 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
52558639 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
52558686 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * *
52558733 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGGAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
52558780 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
* * * * *
52558827 TATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
*
52558874 TAAATGTGATAAG
1 TATATGTGATAAG
52558887 TCCCGAAGGG
Statistics
Matches: 230, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 230 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
Found at i:52562263 original size:30 final size:30
Alignment explanation
Indices: 52562229--52562285 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
52562219 TTTACAAGCC
52562229 TAGGGG-AAAAAGTGTAATTTTGACAAAGTT
1 TAGGGGTAAAAA-TGTAATTTTGACAAAGTT
*
52562259 TAGGGGTAAAAATGTAATTTTGCCAAA
1 TAGGGGTAAAAATGTAATTTTGACAAA
52562286 ATATGGTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGTAAAAATGTAATTTTGACAAAGTT
Found at i:52563346 original size:50 final size:50
Alignment explanation
Indices: 52563099--52563335 Score: 296
Period size: 50 Copynumber: 4.7 Consensus size: 50
52563089 TAAGACAGTT
* *
52563099 TTAGGTCACGTGTGTAGTAATAAGTGCAGGTTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
52563149 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATATC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGAT-TG
* * * * * *
52563200 TTCGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTTTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
*
52563250 TTAGGTCACGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
52563300 TTAGGTCGCATGTGTAGTACTAAATGCAGGCTACTA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
52563336 TGCATACCAG
Statistics
Matches: 155, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
50 116 0.75
51 39 0.25
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:52565264 original size:18 final size:20
Alignment explanation
Indices: 52565202--52565253 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
52565192 CAGGCTGAGG
*
52565202 ACACGAGCGTGTCCAGAGCC
1 ACACGGGCGTGTCCAGAGCC
*
52565222 ACACGGTCGTGTCCAGAGCC
1 ACACGGGCGTGTCCAGAGCC
52565242 ACACGGGCGTGT
1 ACACGGGCGTGT
52565254 GAGACCACAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.21, C:0.33, G:0.33, T:0.13
Consensus pattern (20 bp):
ACACGGGCGTGTCCAGAGCC
Found at i:52569856 original size:68 final size:64
Alignment explanation
Indices: 52569649--52569901 Score: 210
Period size: 68 Copynumber: 3.8 Consensus size: 64
52569639 CATAATTTTG
* *
52569649 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCGT
1 GCTCTCTTGTACACATGGTGTACAC-TAGTACCACCCATGTGACCTAGCTACA-TATATTCTCGT
52569711 A
64 A
* * * * ** *
52569712 GCTCTCTTGT-CTACATGGTGTCCTTCACCTGGAACCACGCATGCCACCTAGCTACATATA-TCC
1 GCTCTCTTGTAC-ACATGGTG---TACA-CTAGTACCACCCATGTGACCTAGCTACATATATTCT
52569775 CGTA
61 CGTA
* *
52569779 GCTCTCTTGTCCACATGGTGTACACATAGTATCACCCATGTGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTACACATGGTGTACAC-TAGTACCACCCATGTGACCTAGCTACAT-AT-AT-TCTC
52569844 GTA
62 GTA
* * * * **
52569847 GCTCTCTTGTACATATGATGTGCACTCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGTACACATGGTGTACACT-AGTACCACCCATGTGACCTAGCTACATA
52569902 CCATCTGTAT
Statistics
Matches: 151, Mismatches: 25, Indels: 24
0.75 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.13
64 25 0.17
65 2 0.01
66 21 0.14
67 30 0.20
68 53 0.35
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTACACATGGTGTACACTAGTACCACCCATGTGACCTAGCTACATATATTCTCGTA
Found at i:52572966 original size:93 final size:93
Alignment explanation
Indices: 52572858--52573028 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
52572848 GCCCCTAAGT
* *
52572858 GAACTCGAACTCAACTCAACGAGCTCAGG-CGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
52572922 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* *
52572951 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
52573016 CGAGTTCGGATGC
66 CGAGTTCGGATGC
52573029 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:52573023 original size:46 final size:45
Alignment explanation
Indices: 52572853--52573025 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
52572843 AACCCGCCCC
* * *
52572853 TAAGTGAACTCGAACTCAACTCAACGAGCTCAGG-CGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGAC-ATTGCATCCA
* *
52572899 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTGCATCCA
* *
52572947 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCA
52572992 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
52573026 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 58 0.55
47 29 0.27
48 2 0.02
49 1 0.01
50 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
Found at i:52575427 original size:15 final size:15
Alignment explanation
Indices: 52575398--52575447 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
52575388 CAAAGATAAC
*
52575398 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
52575412 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
52575427 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
52575442 AAGAAA
1 AAGAAA
52575448 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:52575456 original size:15 final size:15
Alignment explanation
Indices: 52575409--52575456 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
52575399 AGAAAACCGA
52575409 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
52575423 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
52575439 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
52575454 ATA
1 ATA
52575457 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:52578478 original size:92 final size:93
Alignment explanation
Indices: 52578367--52578536 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
52578357 CGCCCTAAGT
* *
52578367 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC-GACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
52578431 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
52578459 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
52578524 CGAGTTCGGATGC
66 CGAGTTCGGATGC
52578537 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 49 0.66
93 25 0.34
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:52578510 original size:46 final size:46
Alignment explanation
Indices: 52578362--52578533 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
52578352 TAACCCGCCC
* * *
52578362 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
52578408 TAAGTGAACTC-GACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
52578455 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
52578500 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
52578534 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 22 0.21
46 46 0.44
47 24 0.23
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:52581542 original size:46 final size:46
Alignment explanation
Indices: 52581492--52581667 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
52581482 TGGTTGAGCA
52581492 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
52581538 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
52581583 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
52581631 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
52581668 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:52581648 original size:93 final size:93
Alignment explanation
Indices: 52581489--52581660 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
52581479 GGATGGTTGA
* *
52581489 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
52581554 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
52581582 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
52581647 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
52581661 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:52589099 original size:46 final size:46
Alignment explanation
Indices: 52589049--52589224 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
52589039 TGGTTGAGCA
52589049 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
52589095 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
52589140 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
52589188 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
52589225 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:52589205 original size:93 final size:93
Alignment explanation
Indices: 52589046--52589217 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
52589036 GGATGGTTGA
* *
52589046 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
52589111 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
52589139 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
52589204 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
52589218 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:52591265 original size:15 final size:15
Alignment explanation
Indices: 52591245--52591283 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
52591235 CAAGAAAACC
52591245 GAATAAAGAGATCCA
1 GAATAAAGAGATCCA
52591260 GAATAAAGAGATCCA
1 GAATAAAGAGATCCA
*
52591275 GGATAAAGA
1 GAATAAAGA
52591284 AACCCAAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.54, C:0.10, G:0.23, T:0.13
Consensus pattern (15 bp):
GAATAAAGAGATCCA
Found at i:52594008 original size:18 final size:18
Alignment explanation
Indices: 52593985--52594023 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
52593975 AGACATTCAT
52593985 ATCACATTTTCATTTATC
1 ATCACATTTTCATTTATC
52594003 ATCACATTTTCATTTATC
1 ATCACATTTTCATTTATC
52594021 ATC
1 ATC
52594024 TTACCATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.23, G:0.00, T:0.49
Consensus pattern (18 bp):
ATCACATTTTCATTTATC
Found at i:52594021 original size:15 final size:17
Alignment explanation
Indices: 52593978--52594019 Score: 66
Period size: 18 Copynumber: 2.4 Consensus size: 17
52593968 ATCACCGAGA
*
52593978 CATTCATATCACATTTT
1 CATTTATATCACATTTT
52593995 CATTTATCATCACATTTT
1 CATTTAT-ATCACATTTT
52594013 CATTTAT
1 CATTTAT
52594020 CATCTTACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (17 bp):
CATTTATATCACATTTT
Found at i:52594364 original size:93 final size:93
Alignment explanation
Indices: 52594252--52594421 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
52594242 GCCCCTAAGT
* *
52594252 GAACTCGGACTCAACTCAACGAGCTCGAACGTTCGCATCCATAAGTGAACTTAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
52594317 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
52594345 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
52594410 CGAGTTCGGATG
66 CGAGTTCGGATG
52594422 TTCAACCATC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:52594438 original size:46 final size:46
Alignment explanation
Indices: 52594247--52594424 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
52594237 AACCCGCCCC
* *
52594247 TAAGTGAACTCGGACTCAACTCAACGAGCTCGAACGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
** * * * * *
52594293 TAAGTGAACTTAGACTCAACTCAACGAGTTCGGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCATCCA
* * *
52594339 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
*
52594386 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTC
52594425 AACCATCCTA
Statistics
Matches: 104, Mismatches: 23, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.65
47 32 0.31
48 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:52596322 original size:40 final size:40
Alignment explanation
Indices: 52596295--52596464 Score: 261
Period size: 40 Copynumber: 4.2 Consensus size: 40
52596285 CTAAGATCCA
* *
52596295 AAGGCATTTGTGCAAGTTACTAAATCCGGGTAAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
* *
52596335 AAGGCATTTGTACGAGTTACTAAATCTGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
52596375 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
** *
52596415 AAGGCATTTGTGCGAGTTACTATAA-CCGGGCCATGTCCCG
1 AAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCG
52596455 AAGGCATTTG
1 AAGGCATTTG
52596465 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
40 118 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
Found at i:52596471 original size:40 final size:40
Alignment explanation
Indices: 52596295--52596487 Score: 248
Period size: 40 Copynumber: 4.8 Consensus size: 40
52596285 CTAAGATCCA
* * *
52596295 AAGGCATTTGTGCAAGTTACTAAATCCGGGTAAAGTCCCG
1 AAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCCCG
*
52596335 AAGGCATTTGTACGAGTTACTAAATCTGGGTTAAGTCCCG
1 AAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCCCG
*
52596375 AAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
1 AAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCCCG
* ** *
52596415 AAGGCATTTGTGCGAGTTACTATAA-CCGGGCCATGTCCCG
1 AAGGCATTTGTACGAGTTACTA-AATCCGGGTTAAGTCCCG
* *
52596455 AAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA
1 AAGGCATTTGTACGAGTTA-CTAAATCCGGGTTAA
52596488 ACTCCGAAGG
Statistics
Matches: 135, Mismatches: 15, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 6 0.04
40 127 0.94
41 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (40 bp):
AAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTCCCG
Found at i:52604628 original size:40 final size:40
Alignment explanation
Indices: 52604404--52604621 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
52604394 TGTCCGGGCC
* * * **
52604404 AAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACT
1 AAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTT
52604444 AAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTT
1 AAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTT
52604484 AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTT
*
52604524 AAGTCCCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTT
**
52604564 AAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCC
1 AAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTT
*
52604604 ATGTCCCGAAGGCATTTG
1 AAGTCCCGAAGGCATTTG
52604622 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 153 0.93
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTT
Found at i:52615816 original size:9 final size:9
Alignment explanation
Indices: 52615802--52615836 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
52615792 AAAAACAAGC
52615802 GAAAAAAGT
1 GAAAAAAGT
52615811 GAAAAAAGCT
1 GAAAAAAG-T
*
52615821 AAAAAAAGT
1 GAAAAAAGT
52615830 GAAAAAA
1 GAAAAAA
52615837 ATTTAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.71, C:0.03, G:0.17, T:0.09
Consensus pattern (9 bp):
GAAAAAAGT
Found at i:52626307 original size:40 final size:40
Alignment explanation
Indices: 52626205--52626388 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
52626195 AAATTGAATG
* * * * *
52626205 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
52626245 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
52626285 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
52626325 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
52626365 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
52626389 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:52628976 original size:26 final size:27
Alignment explanation
Indices: 52628947--52629022 Score: 93
Period size: 26 Copynumber: 2.9 Consensus size: 27
52628937 CAACACACTG
52628947 ATATCATAGCAAAGCTGCCAGTAAT-A
1 ATATCATAGCAAAGCTGCCAGTAATCA
** *
52628973 ATATCGCAGCAAAGCTGCCAAT-ATCA
1 ATATCATAGCAAAGCTGCCAGTAATCA
* *
52628999 GTAACATAGCAAAGCTGCCAGTAA
1 ATATCATAGCAAAGCTGCCAGTAA
52629023 CAGTATATGT
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
25 2 0.05
26 37 0.93
27 1 0.03
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (27 bp):
ATATCATAGCAAAGCTGCCAGTAATCA
Found at i:52632871 original size:26 final size:26
Alignment explanation
Indices: 52632840--52632912 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
52632830 GCCAGTACAC
52632840 CAATATCGCAGCAAAGCTGCCAGAAAT
1 CAATATCGCAGCAAAGCTGCCAG-AAT
* *
52632867 -AATATCACAGCAAAGCTGCCAGTAT
1 CAATATCGCAGCAAAGCTGCCAGAAT
* *
52632892 CAGTAACGCAGCAAAGCTGCC
1 CAATATCGCAGCAAAGCTGCC
52632913 GGTAACAGTA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
25 2 0.05
26 38 0.95
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.15
Consensus pattern (26 bp):
CAATATCGCAGCAAAGCTGCCAGAAT
Found at i:52632921 original size:26 final size:26
Alignment explanation
Indices: 52632846--52632922 Score: 91
Period size: 26 Copynumber: 3.0 Consensus size: 26
52632836 ACACCAATAT
* * * *
52632846 CGCAGCAAAGCTGCCAGAAATAATAT
1 CGCAGCAAAGCTGCCAGTAACAGTAA
* *
52632872 CACAGCAAAGCTGCCAGTATCAGTAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
*
52632898 CGCAGCAAAGCTGCCGGTAACAGTA
1 CGCAGCAAAGCTGCCAGTAACAGTA
52632923 TATGTGGCAA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.38, C:0.26, G:0.22, T:0.14
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAACAGTAA
Found at i:52635441 original size:16 final size:16
Alignment explanation
Indices: 52635417--52635449 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
52635407 TATGACAAAG
*
52635417 AAATGTATGCCTTAGT
1 AAATATATGCCTTAGT
52635433 AAATATATGCCTTAGT
1 AAATATATGCCTTAGT
52635449 A
1 A
52635450 CGAGTGTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (16 bp):
AAATATATGCCTTAGT
Found at i:52640594 original size:86 final size:86
Alignment explanation
Indices: 52640482--52640676 Score: 313
Period size: 86 Copynumber: 2.3 Consensus size: 86
52640472 GTCTCAAACG
* * *
52640482 TGGTTTTACATGT-AATCAAATATCGATGCCACTGTCCCAGATAGGGTCTTACACGAAATCAAAT
1 TGGTTTTACACGTAAATCATATATCGATGCCACTATCCCAGATAGGGTCTTACACGAAATCAAAT
52640546 ACGATG-TCGATGTCCCAGACA
66 ACGATGCT-GATGTCCCAGACA
52640567 TGGTTTTACACGTAAATCATATATCGATGCCACTATCCCAGATAGGGTCTTACACGAAATCAAAT
1 TGGTTTTACACGTAAATCATATATCGATGCCACTATCCCAGATAGGGTCTTACACGAAATCAAAT
52640632 ACGATGCTGATGTCCCAGACA
66 ACGATGCTGATGTCCCAGACA
** *
52640653 TCATCTTACACGTAAATCATATAT
1 TGGTTTTACACGTAAATCATATAT
52640677 GGAATCCTAT
Statistics
Matches: 102, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
85 12 0.12
86 89 0.87
87 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (86 bp):
TGGTTTTACACGTAAATCATATATCGATGCCACTATCCCAGATAGGGTCTTACACGAAATCAAAT
ACGATGCTGATGTCCCAGACA
Found at i:52640650 original size:42 final size:43
Alignment explanation
Indices: 52640495--52640638 Score: 195
Period size: 42 Copynumber: 3.4 Consensus size: 43
52640485 TTTTACATGT
52640495 AATCAAATATCGATGCCACTGTCCCAGATAGGGTCTTACACGA
1 AATCAAATATCGATGCCACTGTCCCAGATAGGGTCTTACACGA
* * * *
52640538 AATCAAATA-CGATGTCGA-TGTCCCAGACATGGTTTTACACGTA
1 AATCAAATATCGATG-CCACTGTCCCAGATAGGGTCTTACACG-A
* *
52640581 AATCATATATCGATGCCACTATCCCAGATAGGGTCTTACACGA
1 AATCAAATATCGATGCCACTGTCCCAGATAGGGTCTTACACGA
52640624 AATCAAATA-CGATGC
1 AATCAAATATCGATGC
52640639 TGATGTCCCA
Statistics
Matches: 86, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
42 31 0.36
43 31 0.36
44 24 0.28
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (43 bp):
AATCAAATATCGATGCCACTGTCCCAGATAGGGTCTTACACGA
Found at i:52640660 original size:42 final size:43
Alignment explanation
Indices: 52640482--52640671 Score: 176
Period size: 42 Copynumber: 4.4 Consensus size: 43
52640472 GTCTCAAACG
* * * *
52640482 TGGTTTTACATGT-AATCAAATATCGATGC-CACTGTCCCAGATA
1 TGGTCTTACACGTAAATCAAATA-CGATGCTGA-TGTCCCAGACA
*
52640525 GGGTCTTACACG-AAATCAAATACGATG-TCGATGTCCCAGACA
1 TGGTCTTACACGTAAATCAAATACGATGCT-GATGTCCCAGACA
* * * * *
52640567 TGGTTTTACACGTAAATCATATATCGATGC-CACTATCCCAGATA
1 TGGTCTTACACGTAAATCAAATA-CGATGCTGA-TGTCCCAGACA
*
52640611 GGGTCTTACACG-AAATCAAATACGATGCTGATGTCCCAGACA
1 TGGTCTTACACGTAAATCAAATACGATGCTGATGTCCCAGACA
**
52640653 TCATCTTACACGTAAATCA
1 TGGTCTTACACGTAAATCA
52640672 TATATGGAAT
Statistics
Matches: 118, Mismatches: 20, Indels: 18
0.76 0.13 0.12
Matches are distributed among these distances:
42 49 0.42
43 45 0.38
44 24 0.20
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (43 bp):
TGGTCTTACACGTAAATCAAATACGATGCTGATGTCCCAGACA
Found at i:52647596 original size:40 final size:40
Alignment explanation
Indices: 52647412--52647589 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
52647402 TGTCCGGGCC
* * * **
52647412 AAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACT
1 AAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTT
52647452 AAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTT
1 AAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTT
52647492 AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTT
1 AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTT
* **
52647532 AAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGAGCC
1 AAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTT
*
52647572 ATGTCCCGAAGGCATTTG
1 AAGTCCCGAAGGCATTTG
52647590 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
39 1 0.01
40 114 0.91
41 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTT
Found at i:52647596 original size:80 final size:79
Alignment explanation
Indices: 52647457--52647612 Score: 208
Period size: 80 Copynumber: 2.0 Consensus size: 79
52647447 GGACTAAGAT
* ** **
52647457 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGAGCCAAGTCCCGAAGGCATTTGAACGAG-TAGCT
52647521 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
*
52647537 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGAGCCATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGAGCCAAGTCCCGAAGGCATTTGAACGAGTAGCT
*
52647601 ATATCCGGTTAA
65 AAATCCGGTTAA
52647613 ACTCCGAAGG
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 8 0.12
80 57 0.85
81 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGAGCCAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:52655617 original size:40 final size:40
Alignment explanation
Indices: 52655523--52655747 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
52655513 TATTCGAATG
* * *
52655523 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
52655564 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
52655604 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
52655644 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
52655684 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
52655724 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
52655748 CTTGCGCAAG
Statistics
Matches: 158, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.82
41 28 0.18
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:52657165 original size:27 final size:27
Alignment explanation
Indices: 52657135--52657201 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
52657125 GTACGGGGTG
52657135 TTACAGAAATACCCCTGTAGGGTAGAA
1 TTACAGAAATACCCCTGTAGGGTAGAA
*
52657162 TTACTGAAATACCCCTGTAGGGTAGAA
1 TTACAGAAATACCCCTGTAGGGTAGAA
* *
52657189 TTACCGAGATACC
1 TTACAGAAATACC
52657202 TTGTGAGGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
TTACAGAAATACCCCTGTAGGGTAGAA
Found at i:52680481 original size:35 final size:36
Alignment explanation
Indices: 52680432--52680523 Score: 132
Period size: 35 Copynumber: 2.6 Consensus size: 36
52680422 CTCTATTTTT
*
52680432 GTGTGTTTCAGATGGATTATCTCTTATAAGCAT-TG
1 GTGTGTTTCGGATGGATTATCTCTTATAAGCATCTG
* *
52680467 GTGTGTTTCGGATGGATTAGCTCTTATAAGTATCTG
1 GTGTGTTTCGGATGGATTATCTCTTATAAGCATCTG
* *
52680503 GTGTGTTTTGGCTGGATTATC
1 GTGTGTTTCGGATGGATTATC
52680524 GATGTACTCG
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
35 30 0.60
36 20 0.40
ACGTcount: A:0.18, C:0.11, G:0.27, T:0.43
Consensus pattern (36 bp):
GTGTGTTTCGGATGGATTATCTCTTATAAGCATCTG
Found at i:52683538 original size:30 final size:30
Alignment explanation
Indices: 52683502--52683562 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
52683492 GTCTTAACTC
52683502 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
52683532 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
52683562 A
1 A
52683563 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:52688681 original size:29 final size:28
Alignment explanation
Indices: 52688649--52688751 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
52688639 GTGACGAGAT
* *
52688649 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
52688678 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
52688707 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
52688736 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
52688752 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:52696695 original size:29 final size:28
Alignment explanation
Indices: 52696663--52696765 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
52696653 GTGACGAGAT
* *
52696663 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
52696692 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
52696721 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
52696750 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
52696766 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:52711337 original size:81 final size:81
Alignment explanation
Indices: 52711236--52711512 Score: 376
Period size: 81 Copynumber: 3.4 Consensus size: 81
52711226 ATTACCAAAG
* * * *
52711236 TACCCTTGATTTACAAAATTACCGTTTTACCCTCTATTTATAAAATTACCGTTTTACCTTCGATT
1 TACCCTTGATTTACAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATT
*
52711301 TATAAAATTACCATTT
66 TACAAAATTACCATTT
* * *
52711317 TACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTTGATTTACAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATT
*
52711382 TACAGAATTACCATTT
66 TACAAAATTACCATTT
* * *** * *
52711398 TACCCTCGATTTATAAAATTACCAAAGTACCCTCAATTTATAGAATTACTGTTTTACCCTCAATT
1 TACCCTTGATTTACAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATT
52711463 TACAAAATTACCATTT
66 TACAAAATTACCATTT
* *
52711479 TACCC-TCAGTTTACAAAATTACCGTTTTACCCTC
1 TACCCTTGA-TTTACAAAATTACCATTTTACCCTC
52711513 GTTGTGAAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
80 1 0.01
81 170 0.99
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (81 bp):
TACCCTTGATTTACAAAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATT
TACAAAATTACCATTT
Found at i:52711512 original size:27 final size:27
Alignment explanation
Indices: 52711222--52711513 Score: 334
Period size: 27 Copynumber: 10.8 Consensus size: 27
52711212 CCACAAATTG
*** *
52711222 TAAAATTACCAAAGTACCCTTGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* * *
52711249 CAAAATTACCGTTTTACCCTCTATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* *
52711276 TAAAATTACCGTTTTACCTTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
*
52711303 TAAAATTACCATTTTACCCTTGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
*
52711330 TAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* *
52711357 TAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* *
52711384 CAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
*** *
52711411 TAAAATTACCAAAGTACCCTCAATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
* ** *
52711438 TAGAATTACTGTTTTACCCTCAATTTA
1 TAAAATTACCATTTTACCCTCGATTTA
*
52711465 CAAAATTACCATTTTACCCTC-AGTTTA
1 TAAAATTACCATTTTACCCTCGA-TTTA
* *
52711492 CAAAATTACCGTTTTACCCTCG
1 TAAAATTACCATTTTACCCTCG
52711514 TTGTGAAATT
Statistics
Matches: 228, Mismatches: 35, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
26 1 0.00
27 227 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.39
Consensus pattern (27 bp):
TAAAATTACCATTTTACCCTCGATTTA
Found at i:52711577 original size:27 final size:27
Alignment explanation
Indices: 52711547--52711782 Score: 190
Period size: 27 Copynumber: 8.7 Consensus size: 27
52711537 TATAGGACAG
52711547 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
*
52711574 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * *
52711601 AATTACCGAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTAGTTTGTAA
* * *
52711628 AATTATCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * **
52711655 AATTACCAAAATACCTTTAATTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
52711682 AATTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTT-AGTTTGT-AA
* * **
52711711 AATTA-TAGAAATACCATTAGTTTACAA
1 AATTACCA-AAATACCCTTAGTTTGTAA
** * * *
52711738 AATTACTGAAATACCTTTGGTTTGTAG
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
52711765 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
52711783 GTAGGATGAA
Statistics
Matches: 170, Mismatches: 33, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.02
27 139 0.82
28 10 0.06
29 18 0.11
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.33
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:52711844 original size:27 final size:27
Alignment explanation
Indices: 52711801--52711874 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
52711791 AAATGACTAA
*
52711801 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
52711828 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
52711855 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
52711875 TGATGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:52712726 original size:25 final size:24
Alignment explanation
Indices: 52712688--52712757 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
52712678 AGGAAGTGCT
*
52712688 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
52712712 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
*
52712737 AGAAAGAGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
52712758 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:52713012 original size:31 final size:31
Alignment explanation
Indices: 52712977--52713091 Score: 205
Period size: 31 Copynumber: 3.7 Consensus size: 31
52712967 CGTTTGCAGT
*
52712977 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
52713008 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
52713039 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
52713070 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
52713092 TCAAGACTAA
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:52718321 original size:27 final size:28
Alignment explanation
Indices: 52718278--52718346 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
52718268 ATAGTGAGTC
52718278 CGCACA-TTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
52718304 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
52718332 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
52718347 GTACAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 6 0.15
27 15 0.38
28 19 0.47
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:52726038 original size:27 final size:28
Alignment explanation
Indices: 52725995--52726063 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
52725985 ATAGTGAGTC
52725995 CGCACA-TTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
52726021 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
52726049 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
52726064 GTACAAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 6 0.15
27 15 0.38
28 19 0.47
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:52728240 original size:28 final size:28
Alignment explanation
Indices: 52728169--52728261 Score: 107
Period size: 28 Copynumber: 3.3 Consensus size: 28
52728159 ACTATGAGTA
* * *
52728169 TGATTGGGCTTGACGGGCCAAATGAAAG
1 TGATTGGGCTTGATGGGCCATATGAATG
* *
52728197 TGATTAGGCCTGATGGGCCATATGAATG
1 TGATTGGGCTTGATGGGCCATATGAATG
* *
52728225 TGATTGGGCTTAATGGGCAATATGAAT-
1 TGATTGGGCTTGATGGGCCATATGAATG
52728252 TAGATTGGGC
1 T-GATTGGGC
52728262 CTAAAGGGGA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 1 0.02
28 54 0.98
ACGTcount: A:0.27, C:0.12, G:0.33, T:0.28
Consensus pattern (28 bp):
TGATTGGGCTTGATGGGCCATATGAATG
Found at i:52740583 original size:18 final size:19
Alignment explanation
Indices: 52740548--52740585 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
52740538 AGAATTGGCC
52740548 AAATGGGCCGGAATGGGCT
1 AAATGGGCCGGAATGGGCT
*
52740567 AAATGGGCCTG-ATGGGCT
1 AAATGGGCCGGAATGGGCT
52740585 A
1 A
52740586 TTGGGCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.26, C:0.16, G:0.39, T:0.18
Consensus pattern (19 bp):
AAATGGGCCGGAATGGGCT
Found at i:52740700 original size:29 final size:28
Alignment explanation
Indices: 52740665--52740771 Score: 108
Period size: 29 Copynumber: 3.8 Consensus size: 28
52740655 ATAATATGAT
* *
52740665 TTGGGCCTAATGGGCTAGATGAATGAGAA
1 TTGGGCCTAATGGGCCATATGAAT-AGAA
* *
52740694 TTGGGCCTAGTGGGCCATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATA-GAA
* * *
52740723 CTGGGCCAAATGGGCCATTTGAATA-AGA
1 TTGGGCCTAATGGGCCATATGAATAGA-A
*
52740751 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
52740772 CATGTATGTA
Statistics
Matches: 63, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
27 1 0.02
28 19 0.30
29 43 0.68
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATAGAA
Found at i:52740746 original size:58 final size:57
Alignment explanation
Indices: 52740657--52740769 Score: 154
Period size: 58 Copynumber: 2.0 Consensus size: 57
52740647 GCATGAATAT
** * * *
52740657 AATATGATTTGGGCCTAATGGGCTAGATGAATGAGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAACTGGGCCAAATGGGCCAGATGAATAAG-ATTGGGCCTAGTGGGCCATAAG
**
52740715 AATATGAACTGGGCCAAATGGGCCATTTGAATAAGATTGGGCCTAGTGGGCCATA
1 AATATGAACTGGGCCAAATGGGCCAGATGAATAAGATTGGGCCTAGTGGGCCATA
52740770 TGCATGTATG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
57 20 0.42
58 28 0.58
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.25
Consensus pattern (57 bp):
AATATGAACTGGGCCAAATGGGCCAGATGAATAAGATTGGGCCTAGTGGGCCATAAG
Found at i:52743994 original size:28 final size:29
Alignment explanation
Indices: 52743954--52744052 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
52743944 GTAATAAGCC
*
52743954 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
52743982 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
52744010 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
52744039 CGCACACTTAGTGC
1 CGCACACTTAGTGC
52744053 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:52747358 original size:28 final size:29
Alignment explanation
Indices: 52747318--52747416 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
52747308 GTAATAAGCC
*
52747318 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
52747346 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
52747374 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
52747403 CGCACACTTAGTGC
1 CGCACACTTAGTGC
52747417 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:52755037 original size:28 final size:29
Alignment explanation
Indices: 52754997--52755095 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
52754987 GTAATAAGCC
*
52754997 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
52755025 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
52755053 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
52755082 CGCACACTTAGTGC
1 CGCACACTTAGTGC
52755096 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:52771555 original size:15 final size:15
Alignment explanation
Indices: 52771531--52771561 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
52771521 GTATTGATTG
*
52771531 AATGCTTGTGTATGA
1 AATGCATGTGTATGA
52771546 AATGCATGTGTATGA
1 AATGCATGTGTATGA
52771561 A
1 A
52771562 TTATGAGGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (15 bp):
AATGCATGTGTATGA
Found at i:52773821 original size:29 final size:29
Alignment explanation
Indices: 52773759--52773861 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
52773749 GTGACGAGAT
* * *
52773759 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
52773788 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
52773817 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
52773846 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
52773862 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:52777980 original size:27 final size:28
Alignment explanation
Indices: 52777924--52777993 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
52777914 AAATTTGTAC
52777924 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
52777952 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
52777979 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
52777994 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:52778004 original size:27 final size:27
Alignment explanation
Indices: 52777924--52778005 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
52777914 AAATTTGTAC
* *
52777924 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
52777952 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
52777979 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
52778006 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:52785532 original size:27 final size:28
Alignment explanation
Indices: 52785476--52785545 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
52785466 AAATTTGTAC
52785476 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
52785504 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
52785531 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
52785546 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:52785556 original size:27 final size:27
Alignment explanation
Indices: 52785476--52785557 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
52785466 AAATTTGTAC
* *
52785476 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
52785504 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
52785531 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
52785558 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:52787469 original size:63 final size:63
Alignment explanation
Indices: 52787391--52787554 Score: 163
Period size: 63 Copynumber: 2.6 Consensus size: 63
52787381 TTAGTGAGTC
* *
52787391 ACACAACCTGGACACATACCCATGTGTCTCACTCGTGTATCTCTAATAGGAACTCAGTGAATT
1 ACACGACCTGGACACATACCCATGTGTCTCACTCGTGTACCTCTAATAGGAACTCAGTGAATT
* ** * * * *
52787454 ACACGACCTGGACACATGCCTGTATGTCTCAC-CTGTGTGCCTCTAATATGAACTCAGTGAGTT
1 ACACGACCTGGACACATACCCATGTGTCTCACTC-GTGTACCTCTAATAGGAACTCAGTGAATT
* * * *
52787517 ACATG-GCTCGGACACA-AGCCCATGTATCTTACTCGTGT
1 ACACGACCT-GGACACATA-CCCATGTGTCTCACTCGTGT
52787555 GACTTATGCA
Statistics
Matches: 80, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
62 3 0.04
63 76 0.95
64 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (63 bp):
ACACGACCTGGACACATACCCATGTGTCTCACTCGTGTACCTCTAATAGGAACTCAGTGAATT
Found at i:52792401 original size:30 final size:30
Alignment explanation
Indices: 52792361--52792452 Score: 139
Period size: 30 Copynumber: 3.1 Consensus size: 30
52792351 TGCAAGGGTT
*
52792361 ACACGGCTGTGTGGCCAGGCCATGCGCCGC
1 ACACGGCTGTGTGGCCAGGCCATGTGCCGC
* * *
52792391 ACACGACTGTGTGGCCAGGCCGTGTGCCAC
1 ACACGGCTGTGTGGCCAGGCCATGTGCCGC
*
52792421 ACACGGCTATGTGGCCAGGCCATGTGCCGC
1 ACACGGCTGTGTGGCCAGGCCATGTGCCGC
52792451 AC
1 AC
52792453 GTGACTGAGA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.16, C:0.35, G:0.34, T:0.15
Consensus pattern (30 bp):
ACACGGCTGTGTGGCCAGGCCATGTGCCGC
Found at i:52792474 original size:60 final size:59
Alignment explanation
Indices: 52792361--52792475 Score: 133
Period size: 60 Copynumber: 1.9 Consensus size: 59
52792351 TGCAAGGGTT
* * * *
52792361 ACACGGCTGTGTGGCCAGGCCATGCGCCGCACACGACTGTGTGGCCAGGCCGTGTGCCAC
1 ACACGGCTATGTGGCCAGGCCATGCGCCGCACACGAC-GTGAGACCAGCCCGTGTGCCAC
* **
52792421 ACACGGCTATGTGGCCAGGCCATGTGCCGCACGTGAC-TGAGACACACGCCCGTGT
1 ACACGGCTATGTGGCCAGGCCATGCGCCGCACACGACGTGAGAC-CA-GCCCGTGT
52792476 CTTAGGTCGT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
58 4 0.09
59 2 0.04
60 40 0.87
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (59 bp):
ACACGGCTATGTGGCCAGGCCATGCGCCGCACACGACGTGAGACCAGCCCGTGTGCCAC
Found at i:52799393 original size:29 final size:29
Alignment explanation
Indices: 52799360--52799491 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
52799350 GTGACGAGAT
52799360 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
52799389 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
52799418 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
52799447 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
52799476 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
52799492 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:52806283 original size:29 final size:29
Alignment explanation
Indices: 52806250--52806381 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
52806240 GTGACGAGAT
52806250 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
52806279 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
52806308 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
52806337 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
52806366 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
52806382 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:52811117 original size:2 final size:2
Alignment explanation
Indices: 52811110--52811144 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
52811100 TTCAGTATTC
*
52811110 AT AT AT AT AT AT AT AT AT AT AT AT AT GT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
52811145 TGCTATAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:52813716 original size:40 final size:40
Alignment explanation
Indices: 52813657--52813825 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
52813647 CGGGACTTTA
* * *
52813657 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
52813697 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
52813737 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
52813777 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
52813817 CCCGGATAT
1 CCCGGATAT
52813826 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:52816459 original size:40 final size:40
Alignment explanation
Indices: 52816393--52816559 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
52816383 AAATTGAATG
* * *
52816393 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
52816432 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
52816472 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
52816512 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
52816552 ATATCCGG
1 ATATCCGG
52816560 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:52824461 original size:40 final size:40
Alignment explanation
Indices: 52824395--52824561 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
52824385 AAATTGAATG
* * *
52824395 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
52824434 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
52824474 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
52824514 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
52824554 ATATCCGG
1 ATATCCGG
52824562 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:52833478 original size:40 final size:40
Alignment explanation
Indices: 52833423--52833637 Score: 337
Period size: 40 Copynumber: 5.4 Consensus size: 40
52833413 ATGATAACCA
* *
52833423 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
*
52833463 GGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
52833503 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
52833543 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
52833583 GGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
*
52833622 GGCTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
52833638 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 17 0.10
40 147 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:52840654 original size:20 final size:21
Alignment explanation
Indices: 52840617--52840655 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
52840607 GCACTTCGGT
*
52840617 AATTGGGCCTCGATAGGCTAA
1 AATTGGGCCTCAATAGGCTAA
52840638 AATTGGGCC-CAATAGGCT
1 AATTGGGCCTCAATAGGCT
52840656 TACGGGCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (21 bp):
AATTGGGCCTCAATAGGCTAA
Found at i:52847048 original size:49 final size:49
Alignment explanation
Indices: 52846991--52847346 Score: 567
Period size: 49 Copynumber: 7.3 Consensus size: 49
52846981 ATGTATGAGA
52846991 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
52847040 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
52847089 TGTATATATGTGATAAGGCCTAATGGCCGATGTGTTGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
52847138 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
52847187 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
52847236 TATATATAAGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGT-
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
52847284 T-TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAA--G
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
52847330 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
52847347 TTCCGAAGGG
Statistics
Matches: 289, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 49 0.17
48 1 0.00
49 238 0.82
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:52847051 original size:27 final size:27
Alignment explanation
Indices: 52847020--52847102 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
52847010 CTAATGGCCG
52847020 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
52847047 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
52847070 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
52847096 ATGTGAT
1 ATGTGAT
52847103 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:52852239 original size:30 final size:28
Alignment explanation
Indices: 52852205--52852275 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 28
52852195 TTAGTCTAAA
*
52852205 TTAATACTTAAAGTACAATCACTTCTTAAT
1 TTAATATTTAAAGT--AATCACTTCTTAAT
52852235 TTAATATTTAAAG--ATCACTTCTTAAT
1 TTAATATTTAAAGTAATCACTTCTTAAT
*
52852261 TTGATATTTAAAGTA
1 TTAATATTTAAAGTA
52852276 TGTCTCTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
26 25 0.68
30 12 0.32
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44
Consensus pattern (28 bp):
TTAATATTTAAAGTAATCACTTCTTAAT
Found at i:52852252 original size:26 final size:26
Alignment explanation
Indices: 52852222--52852273 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
52852212 TTAAAGTACA
52852222 ATCACTTCTTAATTTAATATTTAAAG
1 ATCACTTCTTAATTTAATATTTAAAG
*
52852248 ATCACTTCTTAATTTGATATTTAAAG
1 ATCACTTCTTAATTTAATATTTAAAG
52852274 TATGTCTCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.46
Consensus pattern (26 bp):
ATCACTTCTTAATTTAATATTTAAAG
Found at i:52852437 original size:21 final size:20
Alignment explanation
Indices: 52852406--52852482 Score: 70
Period size: 20 Copynumber: 3.9 Consensus size: 20
52852396 TATACATAAT
*
52852406 AAAATATATATAAAAATTAG
1 AAAAAATATATAAAAATTAG
*
52852426 AAATAAATATATAAAAAATT-C
1 AAA-AAATATAT-AAAAATTAG
* *
52852447 AAGAAACATAT-AAAATCTAG
1 AAAAAATATATAAAAAT-TAG
52852467 AAAAAA-ATATAAAAAT
1 AAAAAATATATAAAAAT
52852483 AAAATTTACA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
18 5 0.11
19 5 0.11
20 20 0.43
21 9 0.20
22 7 0.15
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.25
Consensus pattern (20 bp):
AAAAAATATATAAAAATTAG
Found at i:52852566 original size:10 final size:11
Alignment explanation
Indices: 52852537--52852564 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
52852527 TTAATAATAT
52852537 TATTTTTAAAA
1 TATTTTTAAAA
52852548 TATTTTTAAAA
1 TATTTTTAAAA
52852559 TATTTT
1 TATTTT
52852565 AATTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:52852794 original size:26 final size:25
Alignment explanation
Indices: 52852731--52852795 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 25
52852721 AAAATAGATT
*
52852731 AAAAATTAAAAAATTATTTTAATAC
1 AAAAATGAAAAAATTATTTTAATAC
** *
52852756 CTAATTGAGAAAAATT-TTTATAATAC
1 AAAAATGA-AAAAATTATTT-TAATAC
52852782 GAAAAATGAAAAAA
1 -AAAAATGAAAAAA
52852796 AAAATATTTC
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
25 7 0.23
26 18 0.60
27 5 0.17
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (25 bp):
AAAAATGAAAAAATTATTTTAATAC
Found at i:52853737 original size:28 final size:29
Alignment explanation
Indices: 52853654--52853750 Score: 75
Period size: 26 Copynumber: 3.6 Consensus size: 29
52853644 TAAGGGTTAA
* *
52853654 TTTTAAATTTA-G-AATATTATTTAAT-T
1 TTTTTAATTTATGTAATATTATTTATTAT
*
52853680 TTTTTAATTTATGT-A-ATT-TTAATTA-
1 TTTTTAATTTATGTAATATTATTTATTAT
* *
52853705 ATTTTAATTT-TTTAATATTATTTATTATT
1 TTTTTAATTTATGTAATATTATTTATTA-T
*
52853734 TTTTTCATTTATGTAAT
1 TTTTTAATTTATGTAAT
52853751 TTAAATTAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
24 2 0.04
25 14 0.26
26 16 0.30
27 8 0.15
29 8 0.15
30 5 0.09
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (29 bp):
TTTTTAATTTATGTAATATTATTTATTAT
Found at i:52853769 original size:54 final size:53
Alignment explanation
Indices: 52853650--52853782 Score: 175
Period size: 54 Copynumber: 2.5 Consensus size: 53
52853640 ATGGTAAGGG
* * *
52853650 TTAATTTTAAATTTAGAATATTATTTA-ATTTTTTTAATTTATGTAATTTTAA
1 TTAATTTTAATTTTATAATATTATTTATATTTTTTTAATTTATGTAATTTAAA
* *
52853702 TTAATTTTAATTTTTTAATATTATTTATTATTTTTTTCATTTATGTAATTTAAA
1 TTAATTTTAATTTTATAATATTATTTA-TATTTTTTTAATTTATGTAATTTAAA
52853756 TTAATTTGT-ATTTTATAAT-TT-TTTATA
1 TTAATTT-TAATTTTATAATATTATTTATA
52853783 ACAATCTGTA
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
51 2 0.03
52 28 0.39
53 2 0.03
54 39 0.54
55 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (53 bp):
TTAATTTTAATTTTATAATATTATTTATATTTTTTTAATTTATGTAATTTAAA
Found at i:52855326 original size:18 final size:18
Alignment explanation
Indices: 52855303--52855345 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
52855293 TGCCAGGTGG
*
52855303 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
52855321 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
52855339 GTTTCCT
1 GTATCCT
52855346 TTTTCCAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:52859092 original size:126 final size:126
Alignment explanation
Indices: 52858859--52859127 Score: 403
Period size: 126 Copynumber: 2.1 Consensus size: 126
52858849 GGCCAAGCAT
* * * * * *
52858859 GAACTACTGTAGAAAAATAGCGTCCACATGAGAGCTTTTTTTAGAACTTTTGCTGATATTGCATC
1 GAACTACTGTAGAAAAAGAACGTCCACATGAGAGCTTTTTTCAGAAATTTTACTGAGATTGCATC
* * *
52858924 ATGCTTGAAGCGTTTTTGACACTATTTGTTTAGAAATATCTTCTCAAATTTATTTTTTCAG
66 ATACTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTTCAG
* *
52858985 GAACTACTATAGAAAAAGAACGTCCACATGAGAGCTTTTTTCAGAAATTTTACTGAGATTGCGTC
1 GAACTACTGTAGAAAAAGAACGTCCACATGAGAGCTTTTTTCAGAAATTTTACTGAGATTGCATC
* * *
52859050 ATACTTGAAGCGTTTTTGACACTATTTGTTTGGAAACGTCTTCTTAAAATTATTTTTTCAG
66 ATACTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTTCAG
*
52859111 GAACTATTGTAGAAAAA
1 GAACTACTGTAGAAAAA
52859128 CCATAAACCC
Statistics
Matches: 127, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
126 127 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.38
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAACGTCCACATGAGAGCTTTTTTCAGAAATTTTACTGAGATTGCATC
ATACTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTTCAG
Done.