Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 180 of 335
Found at i:54004699 original size:27 final size:27
Alignment explanation
Indices: 54004640--54004808 Score: 180
Period size: 27 Copynumber: 6.3 Consensus size: 27
54004630 TGGATAAGTT
* * *
54004640 GTAGAATTACCTAAATA-CCCAGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
54004666 GTAGAATTGCCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
54004693 GTAGAATTATCGAAATACCCCTGTAGC
1 GTAGAATTACCGAAATACCCCTGTAGG
*
54004720 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * * *
54004747 ATATAATTACTGAAATACGCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
54004774 GTAGAAAT-CCTGAAATACCCCTATAAG
1 GTAGAATTACC-GAAATACCCCTGTAGG
54004801 GTAGAATT
1 GTAGAATT
54004809 GTGACACCCC
Statistics
Matches: 118, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
26 16 0.14
27 102 0.86
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:54005668 original size:17 final size:18
Alignment explanation
Indices: 54005626--54005674 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
54005616 AGTTGAAAAG
54005626 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
54005645 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
54005662 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
54005675 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:54006563 original size:40 final size:40
Alignment explanation
Indices: 54006497--54006647 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
54006487 AAATTGAATG
* * *
54006497 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
54006536 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
54006576 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
54006616 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
54006648 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:54006661 original size:40 final size:40
Alignment explanation
Indices: 54006533--54006663 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
54006523 TATGCTGGAA
* * * *
54006533 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
54006573 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
54006613 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
54006653 ATTATATCCGG
1 ATTATATCCGG
54006664 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:54011938 original size:40 final size:39
Alignment explanation
Indices: 54011879--54012064 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 39
54011869 TCGAATGATG
*
54011879 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGC-AAGTGACTAAA
* * *
54011919 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTGACTAAA
* * *
54011959 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTGACTAAA
* * * *
54011999 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTGACTA-AA
*
54012040 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
54012065 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.89
41 13 0.10
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTGACTAAA
Found at i:54012016 original size:80 final size:82
Alignment explanation
Indices: 54011879--54012064 Score: 247
Period size: 80 Copynumber: 2.3 Consensus size: 82
54011869 TCGAATGATG
* *
54011879 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
54011943 TGTGCGAGTTACTA-AA
66 TGTGCGAGTTACTATAA
* * * * **
54011959 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATTCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
54012022 TTGTGCGAGTTACTATAA
65 TTGTGCGAGTTACTATAA
*
54012040 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
54012065 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 1 0.01
80 82 0.88
81 10 0.11
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:54012078 original size:40 final size:39
Alignment explanation
Indices: 54011932--54012064 Score: 221
Period size: 40 Copynumber: 3.3 Consensus size: 39
54011922 GGACTAAGAT
54011932 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAAT-CGGGTTAAGTC
54011972 CCGAAGGCATTTGTGCGAGTTACTAAATTCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAA-TCGGGTTAAGTC
* *
54012012 CCGAAGGCATTTGTGCGAGTTACTATAATCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCGGGTTAAGTC
54012052 CCGAAGGCATTTG
1 CCGAAGGCATTTG
54012065 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
40 86 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCGGGTTAAGTC
Found at i:54018743 original size:27 final size:27
Alignment explanation
Indices: 54018713--54018884 Score: 227
Period size: 27 Copynumber: 6.4 Consensus size: 27
54018703 TGGATAAGTT
* * *
54018713 GTAGAATTACCAAAATACCCCAGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
54018740 GTAGAATTGTCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
54018767 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
54018794 GTAGAATTACCGAAATACCCGTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
54018821 ATAGAATTACTGAAATAGCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
54018848 GTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
54018875 GTAGAATTAC
1 GTAGAATTAC
54018885 TAAGATACCT
Statistics
Matches: 124, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 124 1.00
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:54018892 original size:27 final size:26
Alignment explanation
Indices: 54018713--54018911 Score: 191
Period size: 27 Copynumber: 7.4 Consensus size: 26
54018703 TGGATAAGTT
* * *
54018713 GTAGAATTACCAAAATACCCCAGTAAG
1 GTAGAATTA-CGAAATACCCCTGTAGG
*
54018740 GTAGAATTGTCGAAATACCCCTGTAGG
1 GTAGAATT-ACGAAATACCCCTGTAGG
*
54018767 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTA-CGAAATACCCCTGTAGG
*
54018794 GTAGAATTACCGAAATACCCGTGTAGG
1 GTAGAATTA-CGAAATACCCCTGTAGG
* * *
54018821 ATAGAATTACTGAAATAGCCTTGTAGG
1 GTAGAATTAC-GAAATACCCCTGTAGG
* *
54018848 GTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTA-CGAAATACCCCTGTAGG
* ** *
54018875 GTAGAATTACTAAGATACCTTTGTGGG
1 GTAGAATTACGAA-ATACCCCTGTAGG
*
54018902 GTAAAATTAC
1 GTAGAATTAC
54018912 CATTTTGCCC
Statistics
Matches: 145, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.03
27 140 0.97
28 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (26 bp):
GTAGAATTACGAAATACCCCTGTAGG
Found at i:54018957 original size:27 final size:26
Alignment explanation
Indices: 54018913--54018966 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
54018903 TAAAATTACC
54018913 ATTTTGCCCCTAAGGTGTTAAATGACT
1 ATTTTGCCCCTAAGGTG-TAAATGACT
*
54018940 ATTTTGCCCCT-CGTGTGTAAATGACT
1 ATTTTGCCCCTAAG-GTGTAAATGACT
54018966 A
1 A
54018967 ACCTGTGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (26 bp):
ATTTTGCCCCTAAGGTGTAAATGACT
Found at i:54020068 original size:2 final size:2
Alignment explanation
Indices: 54020061--54020088 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
54020051 GAGACTAGTC
54020061 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
54020089 GTCATGATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:54024545 original size:10 final size:10
Alignment explanation
Indices: 54024532--54024557 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
54024522 AGTAAAACAT
54024532 ATTAAAAATC
1 ATTAAAAATC
54024542 ATTAAAAATC
1 ATTAAAAATC
54024552 ATTAAA
1 ATTAAA
54024558 GCGACCTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (10 bp):
ATTAAAAATC
Found at i:54025049 original size:27 final size:27
Alignment explanation
Indices: 54025019--54025094 Score: 125
Period size: 27 Copynumber: 2.8 Consensus size: 27
54025009 GTCACCAGAT
*
54025019 ACAGATATTTGTGGCAGAGCCACCATA
1 ACAGATATTTGTGGCAGAGCCACCAAA
54025046 ACAGATATTTGTGGCAGAGCCACCAAA
1 ACAGATATTTGTGGCAGAGCCACCAAA
* *
54025073 ACAGATAGTTGTGGCAAAGCCA
1 ACAGATATTTGTGGCAGAGCCA
54025095 ATAGGACGCT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGAGCCACCAAA
Found at i:54025233 original size:26 final size:26
Alignment explanation
Indices: 54025204--54025255 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
54025194 TCAAATTAAC
*
54025204 CCTAAGCGTATAATGGTCATTTTCCA
1 CCTAAGCGTATAATGGTAATTTTCCA
* *
54025230 CCTAGGGGTATAATGGTAATTTTCCA
1 CCTAAGCGTATAATGGTAATTTTCCA
54025256 TACTTAGGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAAGCGTATAATGGTAATTTTCCA
Found at i:54026379 original size:23 final size:25
Alignment explanation
Indices: 54026339--54026384 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
54026329 GTAAAGAAGA
* *
54026339 AGAAAAGAGAATAGGAGATGAGAGG
1 AGAAAAGAGAATAAGAGAAGAGAGG
54026364 AGAAAAGA-AA-AAGAGAAGAGA
1 AGAAAAGAGAATAAGAGAAGAGA
54026385 ATGATCAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.47
24 2 0.11
25 8 0.42
ACGTcount: A:0.61, C:0.00, G:0.35, T:0.04
Consensus pattern (25 bp):
AGAAAAGAGAATAAGAGAAGAGAGG
Found at i:54030427 original size:43 final size:43
Alignment explanation
Indices: 54030390--54030544 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 43
54030380 TATGTGTTCT
* *
54030390 CATGTAAGATCAAGTCTGGGACATTGGCATCAATATGTGATTA
1 CATGTAAGACCAAGTCTGGGACATTGGCATCAATATGTGATTG
* *
54030433 CGTGTAAGACCATGTCTGGGACATTGGCATCGAATA--TGATTCG
1 CATGTAAGACCAAGTCTGGGACATTGGCATC-AATATGTGATT-G
* * *
54030476 C--GTAAGACCTAGTCTGGGACAGTGGCATCGATATGTGATTG
1 CATGTAAGACCAAGTCTGGGACATTGGCATCAATATGTGATTG
* *
54030517 CATGTAAGACTACA-TCTGGGACGTTGGC
1 CATGTAAGACCA-AGTCTGGGACATTGGC
54030545 CTTGTATGAT
Statistics
Matches: 93, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
40 3 0.03
41 27 0.29
42 10 0.11
43 48 0.52
44 5 0.05
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (43 bp):
CATGTAAGACCAAGTCTGGGACATTGGCATCAATATGTGATTG
Found at i:54030493 original size:41 final size:41
Alignment explanation
Indices: 54030393--54030510 Score: 143
Period size: 41 Copynumber: 2.8 Consensus size: 41
54030383 GTGTTCTCAT
* *
54030393 GTAAGATCAAGTCTGGGACATTGGCATC-AATATGTGATTACGT
1 GTAAGA-CCAGTCTGGGACATTGGCATCGAATA--TGATTACGC
54030436 GTAAGACCATGTCTGGGACATTGGCATCGAATATGATT-CGC
1 GTAAGACCA-GTCTGGGACATTGGCATCGAATATGATTACGC
*
54030477 GTAAGACCTAGTCTGGGACAGTGGCATCG-ATATG
1 GTAAGACC-AGTCTGGGACATTGGCATCGAATATG
54030511 TGATTGCATG
Statistics
Matches: 69, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
40 5 0.07
41 28 0.41
42 8 0.12
43 24 0.35
44 4 0.06
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (41 bp):
GTAAGACCAGTCTGGGACATTGGCATCGAATATGATTACGC
Found at i:54031400 original size:90 final size:90
Alignment explanation
Indices: 54031247--54031426 Score: 351
Period size: 90 Copynumber: 2.0 Consensus size: 90
54031237 GAACTTATAG
*
54031247 CATGTATAGGGTAGTTTATATATTTGACTTTGGGGTATGTAAATATGAGCCATGCGAAAATGGCT
1 CATGTATAGGCTAGTTTATATATTTGACTTTGGGGTATGTAAATATGAGCCATGCGAAAATGGCT
54031312 TATTATTTTGTTAAGCTTGGATTTT
66 TATTATTTTGTTAAGCTTGGATTTT
54031337 CATGTATAGGCTAGTTTATATATTTGACTTTGGGGTATGTAAATATGAGCCATGCGAAAATGGCT
1 CATGTATAGGCTAGTTTATATATTTGACTTTGGGGTATGTAAATATGAGCCATGCGAAAATGGCT
54031402 TATTATTTTGTTAAGCTTGGATTTT
66 TATTATTTTGTTAAGCTTGGATTTT
54031427 TATGCTTTGA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (90 bp):
CATGTATAGGCTAGTTTATATATTTGACTTTGGGGTATGTAAATATGAGCCATGCGAAAATGGCT
TATTATTTTGTTAAGCTTGGATTTT
Found at i:54033183 original size:28 final size:28
Alignment explanation
Indices: 54033151--54033220 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
54033141 AATGAGATTG
*
54033151 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
* *
54033179 GCACTAAGTGTGCAAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
54033207 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
54033221 GACTTACTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:54034844 original size:2 final size:2
Alignment explanation
Indices: 54034837--54034869 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
54034827 TGATTGATGG
54034837 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
54034870 GGTTGTGTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:54040737 original size:13 final size:13
Alignment explanation
Indices: 54040716--54040746 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
54040706 AACTAAAAGT
*
54040716 ACTAGTTATATAA
1 ACTAATTATATAA
54040729 ACTAATTATATAA
1 ACTAATTATATAA
54040742 ACTAA
1 ACTAA
54040747 GAACGCACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.52, C:0.10, G:0.03, T:0.35
Consensus pattern (13 bp):
ACTAATTATATAA
Found at i:54046449 original size:38 final size:39
Alignment explanation
Indices: 54046390--54046531 Score: 225
Period size: 38 Copynumber: 3.7 Consensus size: 39
54046380 GAATGTTCGA
54046390 GTGATATCC-GGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
54046428 GTGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
54046466 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
54046505 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
54046532 CTTTGTGCGG
Statistics
Matches: 94, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
38 44 0.47
39 41 0.44
40 9 0.10
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:54046480 original size:77 final size:78
Alignment explanation
Indices: 54046391--54046571 Score: 258
Period size: 77 Copynumber: 2.3 Consensus size: 78
54046381 AATGTTCGAG
54046391 TGATATCC-GGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGCA
54046454 ATTGTGCGAGTTA
66 ATTGTGCGAGTTA
*
54046467 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
** *
54046532 CTTTGTGCGGGTTA
65 AATTGTGCGAGTTA
** * *
54046546 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
54046572 GTTTGAACGA
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
76 8 0.09
77 45 0.48
79 31 0.33
80 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGTTA
Found at i:54051947 original size:29 final size:27
Alignment explanation
Indices: 54051913--54052014 Score: 96
Period size: 29 Copynumber: 3.6 Consensus size: 27
54051903 TACTCAATCA
*
54051913 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * * *
54051942 CGCACACATAGTGCCAATAGTCCAAACT
1 CGCACACTTAGTGCCATTA-TTCAAGCT
*
54051970 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
54051999 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
54052015 ATCTCGTCAC
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
27 1 0.02
28 22 0.37
29 36 0.61
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:54051974 original size:57 final size:56
Alignment explanation
Indices: 54051885--54052016 Score: 151
Period size: 57 Copynumber: 2.3 Consensus size: 56
54051875 GTGTAGAGTT
* * **
54051885 CGCACACATAGTGCTTAATACTCAATCACGCACACTTAGTGCCATGTGATT-CAAGCC
1 CGCACACATAGTGC-CAATACTCAAACACGCACACTTAGTGCCAT-ACATTACAAGCC
* * *
54051942 CGCACACATAGTGCCAATAGTCCAAACTCGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACATAGTGCCAATACT-CAAACACGCACACTTAGTGCCATACATTACAAGCC
54051999 CGCACAC-TCAGTGCCAAT
1 CGCACACAT-AGTGCCAAT
54052017 CTCGTCACCG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
56 9 0.14
57 56 0.86
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.22
Consensus pattern (56 bp):
CGCACACATAGTGCCAATACTCAAACACGCACACTTAGTGCCATACATTACAAGCC
Found at i:54055825 original size:14 final size:14
Alignment explanation
Indices: 54055806--54055861 Score: 51
Period size: 14 Copynumber: 3.6 Consensus size: 14
54055796 TCAAAGCAAG
54055806 AATTAAGAACACAT
1 AATTAAGAACACAT
54055820 AATTAAGAACA-AGTT
1 AATTAAGAACACA--T
54055835 AAATATTTAAGAACACAT
1 --A-A-TTAAGAACACAT
54055853 AATTAAGAA
1 AATTAAGAA
54055862 AATAATAACA
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
13 1 0.03
14 18 0.51
15 2 0.06
16 1 0.03
17 1 0.03
18 2 0.06
19 9 0.26
20 1 0.03
ACGTcount: A:0.57, C:0.09, G:0.09, T:0.25
Consensus pattern (14 bp):
AATTAAGAACACAT
Found at i:54062681 original size:27 final size:27
Alignment explanation
Indices: 54062614--54062740 Score: 179
Period size: 27 Copynumber: 4.7 Consensus size: 27
54062604 CCCCGGTATA
* *
54062614 TAAAATTACTAAAATACCTTCGA-TTG
1 TAAAATTACTGAAATACCCTCGATTTG
*
54062640 TAAAATTACTAAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
54062667 TAAAATTA-TCGAAATACCCTC-AGTTTG
1 TAAAATTACT-GAAATACCCTCGA-TTTG
*
54062694 TAAAATTATTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
54062721 TAAAATTACTGAAATACCCT
1 TAAAATTACTGAAATACCCT
54062741 TGTAGGGTAG
Statistics
Matches: 93, Mismatches: 3, Indels: 9
0.89 0.03 0.09
Matches are distributed among these distances:
26 24 0.26
27 67 0.72
28 2 0.02
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:54062711 original size:54 final size:54
Alignment explanation
Indices: 54062563--54062740 Score: 200
Period size: 53 Copynumber: 3.3 Consensus size: 54
54062553 TTAGTTTACC
* * * * * * * * *
54062563 AAATTATTGAAATACCCCCAG-TTCTAAAATTACCAAAGTACCCCCGGTATATA
1 AAATTACTGAAATACCCTCAGTTTGTAAAATTACTAAAATACCCTCGATTTGTA
* * *
54062616 AAATTACTAAAATACCTTC-GATTGTAAAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCAGTTTGTAAAATTACTAAAATACCCTCGATTTGTA
* *
54062669 AAATTA-TCGAAATACCCTCAGTTTGTAAAATTATTGAAATACCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCAGTTTGTAAAATTACTAAAATACCCTCGATTTGTA
54062723 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
54062741 TGTAGGGTAG
Statistics
Matches: 105, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 55 0.52
54 47 0.45
55 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCAGTTTGTAAAATTACTAAAATACCCTCGATTTGTA
Found at i:54062754 original size:27 final size:27
Alignment explanation
Indices: 54062724--54063276 Score: 610
Period size: 27 Copynumber: 20.6 Consensus size: 27
54062714 CGATTTGTAA
*
54062724 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
54062751 AATTACCGAAA-ACCCCTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* **
54062777 AATTACCGAAATACCCCTGTAATGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
54062804 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
54062831 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
54062858 AATTATTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
54062885 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** *
54062912 AATTA-TCGAAATACCATTGTATGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * *
54062939 AATTATTGAAATATCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
54062966 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
54062993 AATTATTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
54063020 AATTACTGAAATATCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
54063047 AAATACCGAAATACCCTTGCAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
54063074 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
54063101 AATTATTGAAATACCCCTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* ** *
54063128 AAATACCAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
54063155 AAATA-TCGAAATATCCCTATA-GGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * *
54063181 AATTACTGAAATATCCTTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
54063208 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
54063235 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
54063262 AATTACTGAGATACC
1 AATTACTGAAATACC
54063277 TTTATGGGGT
Statistics
Matches: 449, Mismatches: 71, Indels: 12
0.84 0.13 0.02
Matches are distributed among these distances:
26 45 0.10
27 403 0.90
28 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:54063677 original size:22 final size:22
Alignment explanation
Indices: 54063643--54063701 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
54063633 CCCGTTATCG
* *
54063643 ATGGCTCTATGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
54063665 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
54063687 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
54063702 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:54063927 original size:27 final size:26
Alignment explanation
Indices: 54063900--54063966 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 26
54063890 CCATGCTACA
* *
54063900 AATATTTGTTCTGGTGGCTCTGCCAC
1 AATATCTGTTCTGGTGACTCTGCCAC
*
54063926 AATATCTGTATCTGGTGACTCTGTCAC
1 AATATCTGT-TCTGGTGACTCTGCCAC
54063953 AATATCTGTTCTGG
1 AATATCTGTTCTGG
54063967 CAGCCATGCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 13 0.35
27 24 0.65
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (26 bp):
AATATCTGTTCTGGTGACTCTGCCAC
Found at i:54064121 original size:31 final size:31
Alignment explanation
Indices: 54064086--54064164 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
54064076 TTGCATTCAC
* * *
54064086 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* *
54064117 ATTCTGATTCTGTTTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
54064148 ATTCTTATTCTGATTCT
1 ATTCTGATTCTGATTCT
54064165 AATTCTAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.18, C:0.19, G:0.13, T:0.51
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:54064125 original size:6 final size:6
Alignment explanation
Indices: 54064086--54064179 Score: 59
Period size: 6 Copynumber: 15.3 Consensus size: 6
54064076 TTGCATTCAC
* * *
54064086 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG TTTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
54064135 -TCACCTA ATTCTG ATTCTT ATTCTG ATTCTA ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
54064180 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 12, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.06
6 56 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:54065332 original size:32 final size:32
Alignment explanation
Indices: 54065296--54065360 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
54065286 AGTACACTCA
54065296 AGGTGTATAAGTCTATAATCAAGGATGTACAT
1 AGGTGTATAAGTCTATAATCAAGGATGTACAT
54065328 AGGTGTATAAGTCTATAATCAAGGATGTACAT
1 AGGTGTATAAGTCTATAATCAAGGATGTACAT
54065360 A
1 A
54065361 CTCATCAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (32 bp):
AGGTGTATAAGTCTATAATCAAGGATGTACAT
Found at i:54075439 original size:2 final size:2
Alignment explanation
Indices: 54075432--54075475 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
54075422 CACATTCGGC
54075432 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
54075474 TA
1 TA
54075476 AATGTATGCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:54077023 original size:79 final size:80
Alignment explanation
Indices: 54076907--54077059 Score: 195
Period size: 79 Copynumber: 1.9 Consensus size: 80
54076897 AGGCCGGTTA
* * * *
54076907 TAGTAACTTGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTCG
54076971 GG-CTTAGCCTGGAAT
65 GGACTTAGCCTGGAAT
** * *
54076986 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCG
54077050 GGACTTAGCC
65 GGACTTAGCC
54077060 CGGACATCAT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
78 3 0.05
79 49 0.78
80 11 0.17
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCTGGAAT
Found at i:54077063 original size:40 final size:40
Alignment explanation
Indices: 54076860--54077063 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
54076850 CGGAATTTAA
** * *
54076860 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGG
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
54076900 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
54076940 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
54076979 CTGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
54077019 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
54077059 CCGGA
1 CCGGA
54077064 CATCATTCGA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.24
40 90 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:54079425 original size:28 final size:28
Alignment explanation
Indices: 54079393--54079462 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
54079383 AATGAGATTG
*
54079393 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
* *
54079421 GCACTAAGTGTGCAAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
54079449 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
54079463 GACTTACTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:54093303 original size:26 final size:26
Alignment explanation
Indices: 54093221--54093304 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 26
54093211 AGGAAGCGTC
* * *
54093221 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
54093248 CTGATGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
54093275 CTGGTGGCTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
54093301 CTGG
1 CTGG
54093305 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 14 0.28
27 36 0.72
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:54100684 original size:51 final size:51
Alignment explanation
Indices: 54100608--54100713 Score: 203
Period size: 51 Copynumber: 2.1 Consensus size: 51
54100598 CGAAAAGCCG
54100608 GTATCGTGAGAACTTGCAAGTGTGCGAACGCTCGTAAGATTAATAGTTGAT
1 GTATCGTGAGAACTTGCAAGTGTGCGAACGCTCGTAAGATTAATAGTTGAT
*
54100659 GTATCGTGAGAACTTGCAAGTGTGCGAACGCTCGTGAGATTAATAGTTGAT
1 GTATCGTGAGAACTTGCAAGTGTGCGAACGCTCGTAAGATTAATAGTTGAT
54100710 GTAT
1 GTAT
54100714 GTGGTAAATT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (51 bp):
GTATCGTGAGAACTTGCAAGTGTGCGAACGCTCGTAAGATTAATAGTTGAT
Found at i:54102739 original size:40 final size:40
Alignment explanation
Indices: 54102613--54102741 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
54102603 TGCTGGAAAT
* *
54102613 TATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGGC
* *
54102653 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGC
* *
54102693 TCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGGT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGGC
54102733 TATATCCGG
1 TATATCCGG
54102742 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGC
Found at i:54104287 original size:27 final size:26
Alignment explanation
Indices: 54104247--54104358 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
54104237 AGGAAGCGTC
*
54104247 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
54104274 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
54104301 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
54104329 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
54104355 CTGG
1 CTGG
54104359 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 52 0.68
28 17 0.22
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:54104351 original size:54 final size:54
Alignment explanation
Indices: 54104247--54104358 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
54104237 AGGAAGCGTC
*
54104247 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
54104301 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
54104355 CTGG
1 CTGG
54104359 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:54107932 original size:18 final size:17
Alignment explanation
Indices: 54107882--54107921 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
54107872 CACATTGAAG
*
54107882 TGTTTTTTCGAAAACCA
1 TGTTTTTTAGAAAACCA
54107899 TGTTTTTTAGAAAACCA
1 TGTTTTTTAGAAAACCA
54107916 TGTTTT
1 TGTTTT
54107922 CATTGAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (17 bp):
TGTTTTTTAGAAAACCA
Found at i:54115206 original size:22 final size:23
Alignment explanation
Indices: 54115181--54115232 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
54115171 TATAAAACCT
54115181 AATAAAAA-TA-AGCCTAAAGAAA
1 AATAAAAAGTAGA-CCTAAAGAAA
* *
54115203 AATAAAAAGTAGACCTAAAGTAG
1 AATAAAAAGTAGACCTAAAGAAA
54115226 AATAAAA
1 AATAAAA
54115233 GTGAAAACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 8 0.31
23 17 0.65
24 1 0.04
ACGTcount: A:0.65, C:0.08, G:0.12, T:0.15
Consensus pattern (23 bp):
AATAAAAAGTAGACCTAAAGAAA
Found at i:54118284 original size:39 final size:39
Alignment explanation
Indices: 54118166--54118348 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
54118156 TCGTTCAAAC
* * ** * **
54118166 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
54118206 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
54118246 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
54118285 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
54118324 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
54118349 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:54122703 original size:27 final size:26
Alignment explanation
Indices: 54122655--54122714 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
54122645 GCGAGGCTGC
*
54122655 TAGATATTGTGACGAAGTCACCAGATA
1 TAGATATTGTGACGAAGCCACCAGA-A
* * *
54122682 TAGATATTGTGGCTAGGCCACCAGAA
1 TAGATATTGTGACGAAGCCACCAGAA
*
54122708 CAGATAT
1 TAGATAT
54122715 ATATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (26 bp):
TAGATATTGTGACGAAGCCACCAGAA
Found at i:54122735 original size:33 final size:32
Alignment explanation
Indices: 54122676--54122739 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
54122666 ACGAAGTCAC
* *
54122676 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
54122708 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATATAGATAT-TGTGGCGAAGCCACCAGA
54122740 TTGCAGCGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:54123297 original size:10 final size:10
Alignment explanation
Indices: 54123282--54123312 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
54123272 ACACACTTGG
54123282 TTGATGACGA
1 TTGATGACGA
54123292 TTGATGACGA
1 TTGATGACGA
54123302 TTGATGACGA
1 TTGATGACGA
54123312 T
1 T
54123313 ATCTCCTACG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.32
Consensus pattern (10 bp):
TTGATGACGA
Found at i:54125925 original size:40 final size:40
Alignment explanation
Indices: 54125870--54125949 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
54125860 TGCGATCGAT
54125870 CTCACTGTCAAAAAGTAATGGTCCTGACGGGTTTCTTCTA
1 CTCACTGTCAAAAAGTAATGGTCCTGACGGGTTTCTTCTA
*
54125910 CTCACTGGTC-AAAAGTAATGGTCCTGAGGGGTTTCTTCTA
1 CTCACT-GTCAAAAAGTAATGGTCCTGACGGGTTTCTTCTA
54125950 GTCATAAACT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 35 0.92
41 3 0.08
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.33
Consensus pattern (40 bp):
CTCACTGTCAAAAAGTAATGGTCCTGACGGGTTTCTTCTA
Found at i:54128921 original size:35 final size:35
Alignment explanation
Indices: 54128875--54128980 Score: 185
Period size: 35 Copynumber: 3.0 Consensus size: 35
54128865 CACTTGCCTC
*
54128875 TTCCCACTCTCCCATGCTATCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
54128910 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
* *
54128945 CTCCCACTCTCCCATGCTGTCTGCCGCCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
54128980 T
1 T
54128981 CACACACCCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 67 1.00
ACGTcount: A:0.17, C:0.49, G:0.11, T:0.23
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:54129424 original size:33 final size:33
Alignment explanation
Indices: 54129382--54129456 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
54129372 AGAGGGGAAG
*
54129382 CAAAAAAAAAAATCCAGCAAAAAA-TTCCAGCA
1 CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
**
54129414 CCAAAAAAAAATTTCCAGAAAAAAATTTCCAGCA
1 -CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
54129448 -AAAAAAAAA
1 CAAAAAAAAA
54129457 CCAAAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 9 0.24
33 21 0.55
34 8 0.21
ACGTcount: A:0.64, C:0.19, G:0.05, T:0.12
Consensus pattern (33 bp):
CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
Found at i:54129745 original size:11 final size:11
Alignment explanation
Indices: 54129716--54129765 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
54129706 CGACCGGATT
* *
54129716 TCCCTTCCCCC
1 TCCCTTCTCTC
54129727 TCCCTTCTCTC
1 TCCCTTCTCTC
54129738 TCCCTTCTCTC
1 TCCCTTCTCTC
54129749 TTCCC-TCTCTC
1 -TCCCTTCTCTC
*
54129760 TTCCTT
1 TCCCTT
54129766 TTTTTTCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 3 0.09
11 27 0.79
12 4 0.12
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:54130315 original size:22 final size:21
Alignment explanation
Indices: 54130285--54130334 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
54130275 ATTTCTAATA
54130285 TGTATATATATATATATTATG
1 TGTATATATATATATATTATG
54130306 TGTATTATATATATATATTATG
1 TGTA-TATATATATATATTATG
*
54130328 TATATAT
1 TGTATAT
54130335 GCCATTAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 7 0.26
22 20 0.74
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (21 bp):
TGTATATATATATATATTATG
Found at i:54142673 original size:70 final size:70
Alignment explanation
Indices: 54142586--54143174 Score: 980
Period size: 70 Copynumber: 8.2 Consensus size: 70
54142576 CAAGTGACAG
*
54142586 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
54142651 GTTTC
66 GTTTC
54142656 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
54142721 GTTTC
66 GTTTC
*
54142726 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
54142791 GTTTC
66 GTTTC
*
54142796 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC
54142861 AATTTATGTTTC
59 AATTTATGTTTC
*
54142873 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
54142938 GTTTC
66 GTTTC
*
54142943 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
54143008 GTTTC
66 GTTTC
*
54143013 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC
54143078 AATTTATGTTTC
59 AATTTATGTTTC
*
54143090 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
54143155 GTTTC
66 GTTTC
54143160 AAAAATCAACTCATA
1 -AAAATCAACTCATA
54143175 GGTGAGTTGA
Statistics
Matches: 492, Mismatches: 12, Indels: 29
0.92 0.02 0.05
Matches are distributed among these distances:
70 336 0.68
71 18 0.04
72 2 0.00
75 2 0.00
76 4 0.01
77 130 0.26
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTC
Found at i:54142872 original size:77 final size:77
Alignment explanation
Indices: 54142780--54143152 Score: 603
Period size: 77 Copynumber: 5.0 Consensus size: 77
54142770 GTTGAGGTAA
*
54142780 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
54142845 GGTAATTTCAAT
66 GGTAATTTCAAT
*
54142857 TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
54142922 GG-----T-AA-
66 GGTAATTTCAAT
*
54142927 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
54142992 GG-----T-AA-
66 GGTAATTTCAAT
*
54142997 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
54143062 GGTAATTTCAAT
66 GGTAATTTCAAT
*
54143074 TTTCAATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
54143139 GGTAATTTCAAT
66 GGTAATTTCAAT
54143151 TT
1 TT
54143153 ATGTTTCAAA
Statistics
Matches: 281, Mismatches: 8, Indels: 14
0.93 0.03 0.05
Matches are distributed among these distances:
70 133 0.47
71 2 0.01
72 1 0.00
75 1 0.00
76 2 0.01
77 142 0.51
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (77 bp):
TTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
GGTAATTTCAAT
Found at i:54142954 original size:217 final size:217
Alignment explanation
Indices: 54142586--54143174 Score: 1093
Period size: 217 Copynumber: 2.7 Consensus size: 217
54142576 CAAGTGACAG
* *
54142586 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
*
54142644 AATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
66 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
54142709 ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG
131 ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG
54142774 AGGTAATTTCAATTTATGTTTC
196 AGGTAATTTCAATTTATGTTTC
54142796 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
54142861 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
66 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
54142926 ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG
131 ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG
54142991 AGGTAATTTCAATTTATGTTTC
196 AGGTAATTTCAATTTATGTTTC
54143013 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
54143078 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
66 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
54143143 ATTTCAATTTATGTTTCAAAAATCAACTCATA
131 ATTTCAATTTATGTTTC-AAAATCAACTCATA
54143175 GGTGAGTTGA
Statistics
Matches: 368, Mismatches: 3, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
210 49 0.13
215 1 0.00
216 2 0.01
217 302 0.82
218 14 0.04
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (217 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
ATTTCAATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTG
AGGTAATTTCAATTTATGTTTC
Found at i:54142959 original size:147 final size:140
Alignment explanation
Indices: 54142586--54143174 Score: 980
Period size: 147 Copynumber: 4.1 Consensus size: 140
54142576 CAAGTGACAG
*
54142586 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
54142651 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
54142716 TTTATGTTTC
131 TTTATGTTTC
*
54142726 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
*
54142791 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA
54142856 TTTTCAATTTATGTTTC
125 -TTTCAATTTATGTTTC
*
54142873 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
*
54142938 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAA
66 GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
54143003 TTTATGTTTC
131 TTTATGTTTC
*
54143013 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTC
*
54143078 AATTTATGTTTCAAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
59 AATTTATGTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTA
54143143 ATTTCAATTTATGTTTC
124 ATTTCAATTTATGTTTC
54143160 AAAAATCAACTCATA
1 -AAAATCAACTCATA
54143175 GGTGAGTTGA
Statistics
Matches: 423, Mismatches: 11, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
140 183 0.43
141 2 0.00
142 1 0.00
145 2 0.00
146 4 0.01
147 217 0.51
148 14 0.03
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (140 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
TTTATGTTTC
Found at i:54143228 original size:147 final size:142
Alignment explanation
Indices: 54142606--54143275 Score: 686
Period size: 147 Copynumber: 4.7 Consensus size: 142
54142596 CACATTGCGA
* *
54142606 GAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AATTT-CAATTTATGTTTCAAAATCAA
1 GAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAATCAA
54142664 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAA
66 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAA
54142729 ATCAACTCATATT
131 ATCAACTCA-ATT
* * *
54142742 GCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGG-----T-AATTT-CAATTTATGTTTCAAAA
1 ----GAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAA
*
54142800 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTCAATT
62 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AA-TTTCAATT
*
54142865 TATGTTTCAAAATCAACTCATATGGCGA
120 TATGTTTCAAAATCAACTCA-AT----T
* *
54142893 GAGGTGAGTTGAGCCTCAAGACACGTTGAGG-----T-AATTT-CAATTTATGTTTCAAAATCAA
1 GAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAATCAA
*
54142951 CTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAA
66 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAA
54143016 ATCAACTCATATT
131 ATCAACTCA-ATT
* *
54143029 GCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTTCAATTTATGTTTCAAAA
1 ----GAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAA
*
54143094 TCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTT
62 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTT
54143159 CAAAAATCAACTC-A-T
127 C-AAAATCAACTCAATT
**** * * *
54143174 -AGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAGTCTCTACTTTCCAATTCCTGTTTTT
1 GAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCA------A-TTTCCAATT--TATGTTT
*
54143238 CAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCT
57 C-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
54143276 GTTAATTTCT
Statistics
Matches: 476, Mismatches: 21, Indels: 56
0.86 0.04 0.10
Matches are distributed among these distances:
140 192 0.40
141 2 0.00
142 1 0.00
145 3 0.01
146 9 0.02
147 218 0.46
148 11 0.02
149 6 0.01
150 34 0.07
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (142 bp):
GAGGTGAGTTGAGCCTCAAAACACGCTGAGGTAATTTCAATTTCCAATTTATGTTTCAAAATCAA
CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGTTTCAAA
ATCAACTCAATT
Found at i:54143317 original size:54 final size:52
Alignment explanation
Indices: 54143225--54143379 Score: 194
Period size: 54 Copynumber: 3.0 Consensus size: 52
54143215 TCTACTTTCC
* *
54143225 AATTCCTGTTTTTCAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTGTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT
* *
54143279 AATTTCTGTCTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CC-T
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTT
**
54143330 --TTT-TGTTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTT
1 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
54143379 A
1 A
54143380 GGTCATATGT
Statistics
Matches: 89, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
47 1 0.01
48 38 0.43
49 4 0.04
51 1 0.01
54 44 0.49
55 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (52 bp):
AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
Found at i:54144132 original size:35 final size:35
Alignment explanation
Indices: 54144086--54144191 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
54144076 CACTTGCCTC
54144086 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
54144121 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
* *
54144156 CTCCCACTCTCCCATGCTGTCTGCCGCCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
54144191 T
1 T
54144192 CACACACCCC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.16, C:0.49, G:0.12, T:0.23
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:54144635 original size:33 final size:33
Alignment explanation
Indices: 54144593--54144666 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
54144583 AGAGGGGAAG
*
54144593 CAAAAAAAAAAATCCAGCAAAAAA-TTCCAGCA
1 CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
**
54144625 CCAAAAAAAAATTTCCAGAAAAAAATTTCCAGCA
1 -CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
54144659 -AAAAAAAA
1 CAAAAAAAA
54144667 CCAAAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 8 0.22
33 21 0.57
34 8 0.22
ACGTcount: A:0.64, C:0.19, G:0.05, T:0.12
Consensus pattern (33 bp):
CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
Found at i:54144962 original size:9 final size:11
Alignment explanation
Indices: 54144923--54144970 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
54144913 CGACCGGATT
* *
54144923 TCCCTTCCCCC
1 TCCCTTCTCTC
54144934 TCCCTTCTCTC
1 TCCCTTCTCTC
54144945 TCCCTTCTCT-
1 TCCCTTCTCTC
54144955 TCCC-TCTCTC
1 TCCCTTCTCTC
*
54144965 TTCCTT
1 TCCCTT
54144971 TTTTTTTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 5 0.16
10 7 0.22
11 20 0.62
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:54145514 original size:23 final size:23
Alignment explanation
Indices: 54145487--54145539 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
54145477 ATTTCTAATA
54145487 TGTATATATATATATATATTATG
1 TGTATATATATATATATATTATG
54145510 TGTATATATATATATATATTATG
1 TGTATATATATATATATATTATG
*
54145533 TATATAT
1 TGTATAT
54145540 GCCATTAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.53
Consensus pattern (23 bp):
TGTATATATATATATATATTATG
Found at i:54145555 original size:2 final size:2
Alignment explanation
Indices: 54145484--54145539 Score: 62
Period size: 2 Copynumber: 29.0 Consensus size: 2
54145474 ATCATTTCTA
* * *
54145484 AT AT GT AT AT AT AT AT AT AT AT -T AT GT GT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
54145525 AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT
54145540 GCCATTAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
1 2 0.04
2 44 0.96
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (2 bp):
AT
Found at i:54145861 original size:3 final size:3
Alignment explanation
Indices: 54145822--54145847 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
54145812 TTATTGTAGA
54145822 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
54145848 CATACTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:54147542 original size:19 final size:19
Alignment explanation
Indices: 54147520--54147594 Score: 75
Period size: 19 Copynumber: 3.8 Consensus size: 19
54147510 TAATAATAAT
54147520 ATAA-AATAATAATATGTA
1 ATAATAATAATAATATGTA
54147538 CATAA-AATACATATATATGTA
1 -ATAATAATA-ATA-ATATGTA
54147559 TATATATAATAA-AAGTATGTA
1 -ATA-ATAATAATAA-TATGTA
54147580 ATAATAATAATAATA
1 ATAATAATAATAATA
54147595 ATATCTACAA
Statistics
Matches: 49, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
19 17 0.35
20 9 0.18
21 17 0.35
22 2 0.04
23 4 0.08
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (19 bp):
ATAATAATAATAATATGTA
Found at i:54147694 original size:2 final size:2
Alignment explanation
Indices: 54147687--54147725 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
54147677 ATATGTGCAA
* *
54147687 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
54147726 AAATATACAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:54147892 original size:2 final size:2
Alignment explanation
Indices: 54147887--54147942 Score: 62
Period size: 2 Copynumber: 29.0 Consensus size: 2
54147877 AACTAATGGC
* * *
54147887 AT AT AT AC AT AT AT AT AT AT A- AT AC AC AT A- AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
54147927 AT AT AT AC AT AT AT AT
1 AT AT AT AT AT AT AT AT
54147943 GTATTTTTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
1 2 0.04
2 44 0.96
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:54150688 original size:80 final size:80
Alignment explanation
Indices: 54150523--54150709 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
54150513 AATTGAATGA
* * * * *
54150523 TATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
54150588 TTGTGCTAGTGGCTAC
66 TTGTGCGAGT-GCTAC
*
54150604 -ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGC-A
1 TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
54150667 TTCGTGCGAGT-CATTC
66 TT-GTGCGAGTGC-TAC
*
54150683 TATCCGGGCTAAGACCCGAAGG-CATTT
1 TATCCGGGCTAAGTCCCG-AGGACATTT
54150710 GTGCAAATCG
Statistics
Matches: 93, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 5 0.05
80 84 0.90
81 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCGAGTGCTAC
Found at i:54150726 original size:80 final size:79
Alignment explanation
Indices: 54150562--54150728 Score: 178
Period size: 80 Copynumber: 2.1 Consensus size: 79
54150552 GCTGGAAATT
* * *
54150562 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGTCCCGAGGACA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GCTACATCCGGGCTAAGACCCGAGGACA
* * *
54150627 TTTATGCTAGTAATT
65 TTTATGCAAATAATG
*
54150642 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-CATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGC-TAC-ATCCGGGCTAAGACCCG-AGG
* **
54150705 -CATTTGTGCAAATCGTG
62 ACATTTATGCAAATAATG
54150722 ATATCCG
1 ATATCCG
54150729 AGTTAAGTCC
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
78 1 0.01
79 5 0.07
80 64 0.88
81 3 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGCTACATCCGGGCTAAGACCCGAGGACAT
TTATGCAAATAATG
Found at i:54150728 original size:40 final size:39
Alignment explanation
Indices: 54150561--54150715 Score: 152
Period size: 40 Copynumber: 3.9 Consensus size: 39
54150551 TGCTGGAAAT
* * *
54150561 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT--CA
* * * * *
54150601 TACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAA
1 TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTCA
* *
54150640 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA
*
54150680 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
54150716 ATCGTGATAT
Statistics
Matches: 96, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 90 0.94
41 3 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCA
Found at i:54162506 original size:40 final size:40
Alignment explanation
Indices: 54162461--54162628 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
54162451 CGGAATACAA
*
54162461 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
** * *
54162501 CCGGATATAACGTCTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
54162541 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * *
54162581 CCGGATA-AAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCACTTGCACGAA-TGCCTTCGGGTCTTAGC
54162621 CCGGATAT
1 CCGGATAT
54162629 CATTCAATTG
Statistics
Matches: 110, Mismatches: 15, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
39 4 0.04
40 106 0.96
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:54162601 original size:80 final size:80
Alignment explanation
Indices: 54162461--54162628 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
54162451 CGGAATACAA
* *
54162461 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGTCTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGTCTAGCACAAATG
*
54162526 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * *
54162541 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGT--CTAGCACAAA
*
54162604 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
54162621 CCGGATAT
1 CCGGATAT
54162629 CATTCAATTG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 2 0.03
79 2 0.03
80 74 0.95
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGTCTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:54170560 original size:40 final size:40
Alignment explanation
Indices: 54170515--54170680 Score: 201
Period size: 40 Copynumber: 4.2 Consensus size: 40
54170505 GAATACAACT
*
54170515 GGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCC
1 GGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGCCC
*** * *
54170555 GGATATAATGTCTTGCACAAATGCCTTCGGGTATTAGCCC
1 GGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGCCC
* *
54170595 GGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCC
1 GGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGCCC
* * *
54170635 GGATA-AAGTCACTAGCAC-AATTGCCTTCGGGTCTTAACCC
1 GGATATAA-CCACTTGCACGAA-TGCCTTCGGGTCTTAGCCC
54170675 GGATAT
1 GGATAT
54170681 CATTCAATTG
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.04
40 102 0.96
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
GGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGCCC
Found at i:54170661 original size:80 final size:80
Alignment explanation
Indices: 54170528--54170678 Score: 234
Period size: 80 Copynumber: 1.9 Consensus size: 80
54170518 TATAACCACA
* *
54170528 TGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATGTCTTGCACAAATGCCTTCGGGTATTAGC
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATGTCTAGCACAAATGCCTTCGGGTATTAAC
54170593 CCGGATTTAACAACT
66 CCGGATTTAACAACT
* *
54170608 TGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAATTGCCTTCGGGTCTTA
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATGT--CTAGCACAAATGCCTTCGGGTATTA
54170671 ACCCGGAT
64 ACCCGGAT
54170679 ATCATTCAAT
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
78 2 0.03
79 2 0.03
80 61 0.94
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
TGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATGTCTAGCACAAATGCCTTCGGGTATTAAC
CCGGATTTAACAACT
Found at i:54180041 original size:49 final size:48
Alignment explanation
Indices: 54179981--54180157 Score: 153
Period size: 49 Copynumber: 3.6 Consensus size: 48
54179971 TGTTGTGTGT
* * *
54179981 CAGTGTAAGACCTATCTAGGACATAGCATCGACACTGATAGATGAGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGAC-CTGATAGATGAAAGC
* * * * *
54180030 CAGTGTAAGACCTGTCCGGGACACGGCATC-AGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTATCTGGGACATGGCATCGA-CCT-GATAGATGAAAGC
* * **
54180079 TAGTGTAAGACCTATCTGGGACATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGAC-CTGATAGATGAAAGC
* * *
54180126 CAGTGTAAGACCATGTTTGAGACATGGCATCG
1 CAGTGTAAGACC-TATCTGGGACATGGCATCG
54180158 GCATCTTATC
Statistics
Matches: 102, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
47 15 0.15
48 19 0.19
49 66 0.65
50 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCGACCTGATAGATGAAAGC
Found at i:54186945 original size:46 final size:46
Alignment explanation
Indices: 54186878--54187006 Score: 240
Period size: 46 Copynumber: 2.8 Consensus size: 46
54186868 TGTAACCCGC
* *
54186878 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
54186924 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
54186970 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
54187007 TGCTCAACCA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:54189373 original size:30 final size:29
Alignment explanation
Indices: 54189333--54189417 Score: 93
Period size: 30 Copynumber: 2.9 Consensus size: 29
54189323 GATAACAAGA
*
54189333 AAATC-GAATAAAGAAATCCAAGATAGAG
1 AAATCAGAATAAAGAAATCCAAGATAAAG
54189361 AAACTCAGAATAAAGAAATCC-AGAATAAAG
1 AAA-TCAGAATAAAGAAATCCAAG-ATAAAG
* * *
54189391 AGATCCAGGATAAAGAAACCCAAGATA
1 AAAT-CAGAATAAAGAAATCCAAGATA
54189418 CAATACTATG
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
28 3 0.06
29 5 0.10
30 38 0.79
31 2 0.04
ACGTcount: A:0.56, C:0.14, G:0.16, T:0.13
Consensus pattern (29 bp):
AAATCAGAATAAAGAAATCCAAGATAAAG
Found at i:54189377 original size:15 final size:15
Alignment explanation
Indices: 54189338--54189408 Score: 83
Period size: 15 Copynumber: 4.7 Consensus size: 15
54189328 CAAGAAAATC
54189338 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
54189353 -AGATAGAGAAA-CTCA
1 GA-ATAAAGAAATC-CA
54189368 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
54189383 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
54189398 GGATAAAGAAA
1 GAATAAAGAAA
54189409 CCCAAGATAC
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
14 2 0.04
15 43 0.91
16 2 0.04
ACGTcount: A:0.58, C:0.11, G:0.18, T:0.13
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:54189417 original size:15 final size:15
Alignment explanation
Indices: 54189340--54189417 Score: 72
Period size: 15 Copynumber: 5.2 Consensus size: 15
54189330 AGAAAATCGA
54189340 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
54189355 ATAGAGAAA-CTC-AG
1 ATAAAGAAATC-CAAG
54189369 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
54189384 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
54189400 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
54189415 ATA
1 ATA
54189418 CAATACTATG
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
14 3 0.06
15 47 0.90
16 2 0.04
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:54192487 original size:93 final size:93
Alignment explanation
Indices: 54192359--54192529 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
54192349 GCCCATAAGT
* *
54192359 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
54192424 CGAGCTCGGATGCCTAGTTATATCTCTC
66 CGAGCTCGGATGCCTAGTTATATCTCTC
* *
54192452 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
54192517 CGAGTTCGGATGC
66 CGAGCTCGGATGC
54192530 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTATATCTCTC
Found at i:54192526 original size:46 final size:46
Alignment explanation
Indices: 54192351--54192526 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
54192341 TGTAACCCGC
* *
54192351 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
54192397 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A-T
* ** * *
54192442 -TATATCTCTCGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATA--AGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
54192490 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
54192527 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 6 0.06
45 1 0.01
46 65 0.60
47 27 0.25
48 1 0.01
49 7 0.06
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:54195333 original size:9 final size:9
Alignment explanation
Indices: 54195319--54195344 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
54195309 TACTAACGGT
54195319 TTTAAATTA
1 TTTAAATTA
54195328 TTTAAATTA
1 TTTAAATTA
54195337 TTTAAATT
1 TTTAAATT
54195345 TCAATTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
TTTAAATTA
Found at i:54199070 original size:20 final size:21
Alignment explanation
Indices: 54199032--54199071 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
54199022 TCAAAATGGC
*
54199032 CACACAGGCGTGTTGCCCTTT
1 CACACAGGCATGTTGCCCTTT
54199053 CACACAGGCATG-TGCCCTT
1 CACACAGGCATGTTGCCCTT
54199072 GTTTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.17, C:0.35, G:0.23, T:0.25
Consensus pattern (21 bp):
CACACAGGCATGTTGCCCTTT
Found at i:54199364 original size:35 final size:36
Alignment explanation
Indices: 54199300--54199380 Score: 103
Period size: 35 Copynumber: 2.2 Consensus size: 36
54199290 GGGGTGTTAC
*
54199300 ATACAGAATATCACAATTGGGCTTGAGCCCATGTCAG
1 ATACAG-ATATCACAATTGGGCCTGAGCCCATGTCAG
*
54199337 ATACAGATAT-A-AATTCGGGCCTGAGCCCATTTCAG
1 ATACAGATATCACAATT-GGGCCTGAGCCCATGTCAG
*
54199372 ATATAGATA
1 ATACAGATA
54199381 AGGTTACAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
34 4 0.10
35 26 0.65
36 4 0.10
37 6 0.15
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (36 bp):
ATACAGATATCACAATTGGGCCTGAGCCCATGTCAG
Found at i:54202894 original size:22 final size:23
Alignment explanation
Indices: 54202869--54202912 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
54202859 TAACATGTTT
54202869 AGTTTTAATTAATTTT-ATAATA
1 AGTTTTAATTAATTTTGATAATA
*
54202891 AGTTTTGATTAATTTTGATAAT
1 AGTTTTAATTAATTTTGATAAT
54202913 TTTTGATAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (23 bp):
AGTTTTAATTAATTTTGATAATA
Found at i:54202925 original size:20 final size:20
Alignment explanation
Indices: 54202869--54202919 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
54202859 TAACATGTTT
* *
54202869 AGTTTTAATTAATTTTATAATA
1 AGTTTTGATTAA-TTT-TGATA
54202891 AGTTTTGATTAATTTTGATA
1 AGTTTTGATTAATTTTGATA
*
54202911 ATTTTTGAT
1 AGTTTTGAT
54202920 AGATTTGCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 12 0.46
21 3 0.12
22 11 0.42
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (20 bp):
AGTTTTGATTAATTTTGATA
Found at i:54208060 original size:2 final size:2
Alignment explanation
Indices: 54208053--54208080 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
54208043 ACCAGAACAG
54208053 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
54208081 GTGTGTGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:54208167 original size:27 final size:26
Alignment explanation
Indices: 54208119--54208170 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
54208109 GCGAGGCTGC
*
54208119 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
54208145 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
54208171 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:54221089 original size:46 final size:46
Alignment explanation
Indices: 54221039--54221214 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
54221029 TGGTTGAGCA
54221039 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
54221085 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
54221130 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
54221178 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
54221215 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 64 0.58
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:54221195 original size:93 final size:93
Alignment explanation
Indices: 54221036--54221207 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
54221026 GGATGGTTGA
* *
54221036 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
54221101 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
54221129 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
54221194 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
54221208 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:54225377 original size:23 final size:23
Alignment explanation
Indices: 54225350--54225396 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
54225340 TGAAGAATTG
54225350 AAAAAGTTATTAACTGAAGCACC
1 AAAAAGTTATTAACTGAAGCACC
54225373 AAAAAGTTATTAACTGAAGCACC
1 AAAAAGTTATTAACTGAAGCACC
54225396 A
1 A
54225397 GTGTTGGTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (23 bp):
AAAAAGTTATTAACTGAAGCACC
Found at i:54228663 original size:46 final size:46
Alignment explanation
Indices: 54228613--54228788 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
54228603 TGGTTGAGCA
54228613 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
54228659 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
54228704 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
54228752 -CTCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
54228789 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 62 0.56
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:54228769 original size:93 final size:93
Alignment explanation
Indices: 54228610--54228781 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
54228600 GGATGGTTGA
* *
54228610 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
54228675 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
54228703 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCATTGAG
54228767 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
54228782 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:54231234 original size:29 final size:27
Alignment explanation
Indices: 54231200--54231302 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
54231190 TACTCAATCA
*
54231200 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
54231229 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
54231258 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
54231287 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
54231303 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:54239032 original size:29 final size:27
Alignment explanation
Indices: 54238998--54239100 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
54238988 TACTCAATCA
*
54238998 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
54239027 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
54239056 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
54239085 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
54239101 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:54244845 original size:31 final size:33
Alignment explanation
Indices: 54244782--54244848 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
54244772 TCCTTTATAT
54244782 AACAAGGTCATTGGGATTACTCATCCGATCTAA
1 AACAAGGTCATTGGGATTACTCATCCGATCTAA
54244815 AACAAGGTCATT-GGATTACTCAT-CGATCTAA
1 AACAAGGTCATTGGGATTACTCATCCGATCTAA
54244846 AAC
1 AAC
54244849 CTGTCCGCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 11 0.32
32 11 0.32
33 12 0.35
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (33 bp):
AACAAGGTCATTGGGATTACTCATCCGATCTAA
Found at i:54247026 original size:29 final size:29
Alignment explanation
Indices: 54246992--54247069 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
54246982 GTGACGAGAT
* *
54246992 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
54247021 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
54247050 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
54247070 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:54254856 original size:29 final size:29
Alignment explanation
Indices: 54254822--54254899 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
54254812 GTGACGAGAT
* *
54254822 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
54254851 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
54254880 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
54254900 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:54257002 original size:34 final size:34
Alignment explanation
Indices: 54256930--54257002 Score: 78
Period size: 34 Copynumber: 2.1 Consensus size: 34
54256920 AGTAATGGTT
* *
54256930 TAGTTTCAGTTAGGGCCTTAGCCCATTACAATAT
1 TAGTATCAGTTAGGGCCTTAGCCCATTACAATAA
* *
54256964 TAGTATCAGTTTGGG-CTTGAGCCCATCT-CAGTAA
1 TAGTATCAGTTAGGGCCTT-AGCCCAT-TACAATAA
54256998 TAGTA
1 TAGTA
54257003 ACGTACATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
33 3 0.09
34 29 0.88
35 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (34 bp):
TAGTATCAGTTAGGGCCTTAGCCCATTACAATAA
Found at i:54257462 original size:18 final size:17
Alignment explanation
Indices: 54257436--54257470 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
54257426 CATATTGCGG
54257436 GCCCATGTGGGCCCACAT
1 GCCCATGT-GGCCCACAT
*
54257454 GCCCGTGTGGCCCACAT
1 GCCCATGTGGCCCACAT
54257471 AGCCTAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.14, C:0.40, G:0.29, T:0.17
Consensus pattern (17 bp):
GCCCATGTGGCCCACAT
Found at i:54264185 original size:28 final size:28
Alignment explanation
Indices: 54264139--54264207 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
54264129 TTTAAAACCC
*
54264139 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
54264166 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
54264194 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
54264208 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:54266033 original size:19 final size:18
Alignment explanation
Indices: 54265996--54266039 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
54265986 ATACATACAG
54265996 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
54266013 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
54266032 TACTAATT
1 TAATAATT
54266040 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:54268435 original size:28 final size:28
Alignment explanation
Indices: 54268389--54268457 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
54268379 TTTAAAACCC
*
54268389 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
54268416 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
54268444 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
54268458 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:54285114 original size:56 final size:56
Alignment explanation
Indices: 54285040--54285148 Score: 166
Period size: 56 Copynumber: 1.9 Consensus size: 56
54285030 TCTTACACGT
* *
54285040 AATCACATATCAATGCCAACATAGTAGACGTGGTCTTACTCGCAGACATATATCGA
1 AATCACATATCAATGCCAACATAGTAAACGTGGTCTTACTCGCACACATATATCGA
* *
54285096 AATCACATATCGAA-GCCAACATATTAAATGTGGTCTTACTCGCACACATATAT
1 AATCACATATC-AATGCCAACATAGTAAACGTGGTCTTACTCGCACACATATAT
54285149 TGACACCATG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
56 46 0.96
57 2 0.04
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.27
Consensus pattern (56 bp):
AATCACATATCAATGCCAACATAGTAAACGTGGTCTTACTCGCACACATATATCGA
Found at i:54286059 original size:25 final size:25
Alignment explanation
Indices: 54286025--54286075 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
54286015 TGTGCAAAAG
54286025 TATGAACAAAATGCATGGCTTTTAA
1 TATGAACAAAATGCATGGCTTTTAA
54286050 TATGAACAAAATGCATGGCTTTTAA
1 TATGAACAAAATGCATGGCTTTTAA
54286075 T
1 T
54286076 TTTATGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (25 bp):
TATGAACAAAATGCATGGCTTTTAA
Found at i:54289604 original size:17 final size:18
Alignment explanation
Indices: 54289572--54289609 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
54289562 TTAAGGTTAA
54289572 AAAGGTAAATTAATAATT
1 AAAGGTAAATTAATAATT
*
54289590 AAAGGTTAA-TAATAATT
1 AAAGGTAAATTAATAATT
54289607 AAA
1 AAA
54289610 ACAAAACAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (18 bp):
AAAGGTAAATTAATAATT
Found at i:54291901 original size:23 final size:23
Alignment explanation
Indices: 54291871--54291916 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
54291861 TGTGACACGG
54291871 GCGTGTCTGGTGGCTGTGTGAGA
1 GCGTGTCTGGTGGCTGTGTGAGA
54291894 GCGTGTCTGGTGGCTGTGTGAGA
1 GCGTGTCTGGTGGCTGTGTGAGA
54291917 CACATGGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.09, C:0.13, G:0.48, T:0.30
Consensus pattern (23 bp):
GCGTGTCTGGTGGCTGTGTGAGA
Found at i:54291928 original size:25 final size:23
Alignment explanation
Indices: 54291877--54291928 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
54291867 ACGGGCGTGT
* * *
54291877 CTGGTGGCTGTGTGAGAGCGTGT
1 CTGGTGGCTGTGTGAGAACATGC
54291900 CTGGTGGCTGTGTGAGACACATGGC
1 CTGGTGGCTGTGTGAGA-ACAT-GC
54291925 CTGG
1 CTGG
54291929 CCACACGGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 17 0.71
24 2 0.08
25 5 0.21
ACGTcount: A:0.12, C:0.17, G:0.44, T:0.27
Consensus pattern (23 bp):
CTGGTGGCTGTGTGAGAACATGC
Found at i:54300593 original size:15 final size:16
Alignment explanation
Indices: 54300557--54300595 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
54300547 AGCAATTCCT
*
54300557 GAAATGCCAAAAAGCC
1 GAAATGTCAAAAAGCC
*
54300573 GAAATGTCAAAAAGTC
1 GAAATGTCAAAAAGCC
54300589 G-AATGTC
1 GAAATGTC
54300596 TAGCTACGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (16 bp):
GAAATGTCAAAAAGCC
Found at i:54300886 original size:28 final size:29
Alignment explanation
Indices: 54300826--54300894 Score: 113
Period size: 28 Copynumber: 2.4 Consensus size: 29
54300816 TTCAGGCCAG
*
54300826 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
54300855 ATGGGCCATATGAATGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
*
54300883 ATGGGCCGTATG
1 ATGGGCCATATG
54300895 CATGTATGTG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 20 0.53
29 18 0.47
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.28
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCTA
Found at i:54302799 original size:40 final size:40
Alignment explanation
Indices: 54302692--54302858 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
54302682 TCTTCGGAAT
* * *
54302692 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * * *
54302731 TTA-ACCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
*
54302770 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
54302810 TTAACCCGGATATAATC-ACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
54302850 TTAGCCCGG
1 TTAGCCCGG
54302859 GTATCATTCA
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 35 0.32
40 75 0.68
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:54310790 original size:40 final size:40
Alignment explanation
Indices: 54310729--54310892 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
54310719 CGGAATTTAG
* ** *
54310729 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * *
54310769 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
54310809 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * * *
54310849 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGGCTTAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAAC
54310889 CCGG
1 CCGG
54310893 GTATCATTCA
Statistics
Matches: 109, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 108 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:54315122 original size:42 final size:37
Alignment explanation
Indices: 54315086--54315160 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 37
54315076 TCTCACATCA
*
54315086 ACGCCATATCCTAGATATGGTCTTATACAAAGTCTCAT
1 ACGCCATATCCCAGATATGGTCTTATACAAA-TCTCAT
* *
54315124 ATGCCATATCCCAGATATGGTCTTATACGTAATCTCA
1 ACGCCATATCCCAGATATGGTCTTATAC-AAATCTCA
54315161 GTAACCCTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 31 0.94
39 2 0.06
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (37 bp):
ACGCCATATCCCAGATATGGTCTTATACAAATCTCAT
Found at i:54318166 original size:2 final size:2
Alignment explanation
Indices: 54318161--54318185 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
54318151 ATTTCCAAAC
54318161 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
54318186 ATAGAACTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:54319230 original size:37 final size:36
Alignment explanation
Indices: 54319152--54319285 Score: 115
Period size: 37 Copynumber: 3.7 Consensus size: 36
54319142 ACATATTTTT
* * * * *
54319152 CCATGGCCCTGCCAGGGTCTTACACGTATCACAATG
1 CCATAGCCCAGCCATGGTCTTACACGTATTACGATG
* *
54319188 CCATAGCCTAGCCATGGTCTTACATGTCATTACGATG
1 CCATAGCCCAGCCATGGTCTTACACGT-ATTACGATG
* * * *
54319225 CCATAGCCCAGCTATGCTCTTATACGTTATTAAGATG
1 CCATAGCCCAGCCATGGTCTTACACG-TATTACGATG
* * * *
54319262 CCATAGTCCAACTATGGTTTTACA
1 CCATAGCCCAGCCATGGTCTTACA
54319286 GGTACACACA
Statistics
Matches: 78, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
36 22 0.28
37 55 0.71
38 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (36 bp):
CCATAGCCCAGCCATGGTCTTACACGTATTACGATG
Found at i:54324720 original size:40 final size:40
Alignment explanation
Indices: 54324624--54324842 Score: 251
Period size: 40 Copynumber: 5.5 Consensus size: 40
54324614 CGAATGGTAT
* * * *
54324624 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
54324665 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
54324705 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
54324745 CCGGGTTAAGTCCCGGAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * * *
54324785 CCGGGCTAATTTCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
54324825 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
54324843 ACAATCGAGC
Statistics
Matches: 154, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
40 129 0.84
41 25 0.16
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:54324838 original size:120 final size:121
Alignment explanation
Indices: 54324624--54324842 Score: 298
Period size: 120 Copynumber: 1.8 Consensus size: 121
54324614 CGAATGGTAT
* *
54324624 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * *
54324689 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * *
54324745 CCGGGTTAAGTCCCGGAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTTCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * *
54324808 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
54324843 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
119 1 0.01
120 58 0.69
121 25 0.30
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:54324855 original size:80 final size:80
Alignment explanation
Indices: 54324691--54324882 Score: 188
Period size: 80 Copynumber: 2.4 Consensus size: 80
54324681 AGGCATTTGT
* * * * * * * *
54324691 GCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGT
1 GCGAGTTACTAAATCCGGGTTAAATTCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGT
* * * * *
54324756 CCCGGAGGCATTTGT
66 CCCGAAGACAATCGA
* * * * *
54324771 GCGAGTTACTAAATCCGGGCTAATTTCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGT
1 GCGAGTTACTAAATCCGGGTTAAATTCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGT
54324836 CCCGAAGACAATCGA
66 CCCGAAGACAATCGA
** *
54324851 GCGAGTCGCTATATCC-GGTTAAATTCCGAAGG
1 GCGAGTTACTAAATCCGGGTTAAATTCCGAAGG
54324883 TACGTGATTC
Statistics
Matches: 90, Mismatches: 22, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
79 14 0.16
80 76 0.84
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
GCGAGTTACTAAATCCGGGTTAAATTCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGT
CCCGAAGACAATCGA
Done.