Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 190 of 335
Found at i:57229054 original size:42 final size:42
Alignment explanation
Indices: 57228995--57229094 Score: 200
Period size: 42 Copynumber: 2.4 Consensus size: 42
57228985 CAATTTTAAA
57228995 CCGCACACTTAGTGCCAATCTTGTCACCGTGTCCATTTATAC
1 CCGCACACTTAGTGCCAATCTTGTCACCGTGTCCATTTATAC
57229037 CCGCACACTTAGTGCCAATCTTGTCACCGTGTCCATTTATAC
1 CCGCACACTTAGTGCCAATCTTGTCACCGTGTCCATTTATAC
57229079 CCGCACACTTAGTGCC
1 CCGCACACTTAGTGCC
57229095 GAGACCAATA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.21, C:0.35, G:0.15, T:0.29
Consensus pattern (42 bp):
CCGCACACTTAGTGCCAATCTTGTCACCGTGTCCATTTATAC
Found at i:57236965 original size:30 final size:30
Alignment explanation
Indices: 57236910--57237066 Score: 186
Period size: 30 Copynumber: 5.5 Consensus size: 30
57236900 TATATGAATC
57236910 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
57236939 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
57236969 CGCACACTTAGTGCTAT-T-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
57236997 CGCACACTTAGT--TGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
57237023 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
57237053 CGCACACTTAGTGC
1 CGCACACTTAGTGC
57237067 CAATCTTGTC
Statistics
Matches: 114, Mismatches: 5, Indels: 17
0.84 0.04 0.12
Matches are distributed among these distances:
25 2 0.02
26 17 0.15
27 1 0.01
28 29 0.25
29 20 0.18
30 44 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:57245223 original size:39 final size:40
Alignment explanation
Indices: 57245130--57245329 Score: 257
Period size: 40 Copynumber: 5.1 Consensus size: 40
57245120 CGGAATTTAG
* ** *
57245130 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * *
57245170 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC-TAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
57245209 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
*
57245249 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAA-
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
* * *
57245288 CCGGATATAATC-ACTAGCATAAATGCCTT-GGG-CTTAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAAC
57245326 CCGG
1 CCGG
57245330 GTATCATTCA
Statistics
Matches: 142, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
37 4 0.03
38 7 0.05
39 60 0.42
40 71 0.50
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAAC
Found at i:57245229 original size:79 final size:78
Alignment explanation
Indices: 57245130--57245333 Score: 288
Period size: 79 Copynumber: 2.6 Consensus size: 78
57245120 CGGAATTTAG
* *
57245130 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
*
57245195 CCTTCGGGTC-TAGC
65 CCTTCGGGTCTTA-A
* *
57245209 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATG
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
57245274 CCTTCGGGTCTTAA
65 CCTTCGGGTCTTAA
* *
57245288 CCGGATATAATCACTAGCATAAATGCCTT-GGG-CTTAGCCCGGGTAT
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
57245334 CATTCAATTG
Statistics
Matches: 113, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
77 12 0.11
78 4 0.04
79 94 0.83
80 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (78 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGC
CTTCGGGTCTTAA
Found at i:57259830 original size:14 final size:15
Alignment explanation
Indices: 57259800--57259832 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
57259790 GCATAAACAA
57259800 ACACCCAAAACAGCC
1 ACACCCAAAACAGCC
*
57259815 ACACCC-AAACATCC
1 ACACCCAAAACAGCC
57259829 ACAC
1 ACAC
57259833 ATAAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.45, C:0.48, G:0.03, T:0.03
Consensus pattern (15 bp):
ACACCCAAAACAGCC
Found at i:57260637 original size:48 final size:47
Alignment explanation
Indices: 57260566--57260693 Score: 161
Period size: 48 Copynumber: 2.7 Consensus size: 47
57260556 TAAAGTGCTG
*
57260566 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAA-T-GCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--AT-AAGTGGCCA
* * * *
57260614 ATGCCATGTCCCAGTCATGGTCTTACATTGGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAA-GTGGCCA
57260662 ATGCCATGTCCCAGACATGGTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
57260694 ACACATATCA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
45 2 0.03
46 1 0.01
47 1 0.01
48 65 0.94
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAGTGGCCA
Found at i:57262611 original size:70 final size:71
Alignment explanation
Indices: 57262460--57262622 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
57262450 GAGATGTATC
57262460 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
57262525 AGGACA
66 AGGACA
57262531 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
57262595 CGGACA
66 AGGACA
57262601 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
57262623 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:57270081 original size:71 final size:71
Alignment explanation
Indices: 57269993--57270156 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
57269983 GAGATGTATC
57269993 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
57270058 AGGACA
66 AGGACA
*
57270064 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
57270129 CGGACA
66 AGGACA
57270135 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
57270157 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:57281739 original size:24 final size:25
Alignment explanation
Indices: 57281712--57281763 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
57281702 GCCTAGCCTC
57281712 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
* *
57281736 TTTTGATAAATTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
57281761 TTT
1 TTT
57281764 CGGTAAACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:57281777 original size:24 final size:25
Alignment explanation
Indices: 57281719--57281775 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
57281709 CTCTTTTAAT
*
57281719 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
57281744 AATTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
57281769 AACTGGG
1 AACTGGG
57281776 CATATCCCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:57282035 original size:27 final size:27
Alignment explanation
Indices: 57281990--57282207 Score: 276
Period size: 27 Copynumber: 8.0 Consensus size: 27
57281980 GAGGCAAAAT
* * *
57281990 GGTAATTTTTACCCCACAAGGGTATCTC
1 GGTAA-TTCTACCCTACAAGGGTATTTC
57282018 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
57282045 AGTATTTCTACCCTACAAAGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
57282072 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
57282099 AGTAATTCTACCTTACAACGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
57282126 GGTAATTCTACCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
57282153 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
57282180 GGTAATTCTACCGTACAGGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
57282207 G
1 G
57282208 ATATTTTACA
Statistics
Matches: 166, Mismatches: 22, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.02
27 155 0.93
28 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:57282263 original size:27 final size:27
Alignment explanation
Indices: 57282224--57282413 Score: 179
Period size: 27 Copynumber: 7.0 Consensus size: 27
57282214 TACAAATTGA
* * * *
57282224 GTATTTCGATAATTTCACAAATCAGAG
1 GTATTTTGGTAATTTTACAAATCAGGG
*
57282251 GTATTTTGGTAATTTTAC-AAGCTAGGG
1 GTATTTTGGTAATTTTACAAATC-AGGG
57282278 GTATTTTGGTAATTTTACAAA-CTAGGG
1 GTATTTTGGTAATTTTACAAATC-AGGG
* *
57282305 GTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAATCAGGG
* **
57282332 GAATTTTGGTAATTTTACTGATC-GAGG
1 GTATTTTGGTAATTTTACAAATCAG-GG
** * *
57282359 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAATCAGGG
* *
57282386 GTATTTTAGTAATTTTATAAATCGAGGG
1 GTATTTTGGTAATTTTACAAATC-AGGG
57282414 TAAAACGGTA
Statistics
Matches: 135, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
26 4 0.03
27 125 0.93
28 6 0.04
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAATCAGGG
Found at i:57282338 original size:81 final size:81
Alignment explanation
Indices: 57282233--57282402 Score: 225
Period size: 81 Copynumber: 2.1 Consensus size: 81
57282223 AGTATTTCGA
* * * *
57282233 TAATTTCACAAATCAGAGGTATTTTGGTAATTTTACAAGCTAG-GGGTATTTTGGTAATTTTACA
1 TAATTTTACAAACCAGAGGAATTTTGGTAATTTTAC-AGATAGAGGGTATTTTGGTAATTTTACA
* *
57282297 AACTAGGGGTATTTTAG
65 AACCAAGGGTATTTTAG
* * * **
57282314 TAATTTTACAAACCAGGGGAATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAA
1 TAATTTTACAAACCAGAGGAATTTTGGTAATTTTACAGATAGAGGGTATTTTGGTAATTTTACAA
57282379 ACCAAGGGTATTTTAG
66 ACCAAGGGTATTTTAG
57282395 TAATTTTA
1 TAATTTTA
57282403 TAAATCGAGG
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
80 3 0.04
81 74 0.96
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
TAATTTTACAAACCAGAGGAATTTTGGTAATTTTACAGATAGAGGGTATTTTGGTAATTTTACAA
ACCAAGGGTATTTTAG
Found at i:57282413 original size:54 final size:54
Alignment explanation
Indices: 57282224--57282415 Score: 217
Period size: 54 Copynumber: 3.6 Consensus size: 54
57282214 TACAAATTGA
* * * * *
57282224 GTATTTCGATAATTTCACAAATC-AGAGGTATTTTGGTAATTTTACAAGCTAGGG
1 GTATTTTGGTAATTTTACAAATCGAG-GGTATTTTGGTAATTTTACAAACCAGGG
* *
57282278 GTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTAGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTACAAACCAGGG
* ** ** *
57282332 GAATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCAGGG
* *
57282386 GTATTTTAGTAATTTTATAAATCGAGGGTA
1 GTATTTTGGTAATTTTACAAATCGAGGGTA
57282416 AAACGGTAAT
Statistics
Matches: 116, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 112 0.97
55 3 0.03
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCAGGG
Found at i:57282414 original size:27 final size:27
Alignment explanation
Indices: 57282394--57282683 Score: 481
Period size: 27 Copynumber: 10.7 Consensus size: 27
57282384 GGGTATTTTA
* *
57282394 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
57282421 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
57282448 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
57282475 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
57282502 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
57282529 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
57282556 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
57282583 GTAATTCTATAAATCGAGGGTGAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
57282610 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
**
57282637 GTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
57282664 GTAATTCTACAAATCGAGGG
1 GTAATTCTATAAATCGAGGG
57282684 CATTTCAGTA
Statistics
Matches: 248, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 248 1.00
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:57282437 original size:81 final size:81
Alignment explanation
Indices: 57282352--57282683 Score: 432
Period size: 81 Copynumber: 4.1 Consensus size: 81
57282342 AATTTTACTG
** * * * *** * *
57282352 ATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAATCGAGGGTAA
1 ATCGAGGGTATAATGGTAATTCTATAAACCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAA
* *
57282417 AACGGTAATTCTGTAA
66 AATGGTAATTCTATAA
* * * *
57282433 ATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAA
1 ATCGAGGGTATAATGGTAATTCTATAAACCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAA
* *
57282498 AATGATAATTCTGTAA
66 AATGGTAATTCTATAA
* *
57282514 ATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAA
1 ATCGAGGGTATAATGGTAATTCTATAAACCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAA
57282579 AATGGTAATTCTATAA
66 AATGGTAATTCTATAA
*
57282595 ATCGAGGGTGA-AATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 ATCGAGGGT-ATAATGGTAATTCTATAAACCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
** *
57282659 AAACAGTAATTCTACAA
65 AAATGGTAATTCTATAA
57282676 ATCGAGGG
1 ATCGAGGG
57282684 CATTTCAGTA
Statistics
Matches: 227, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
81 226 1.00
82 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (81 bp):
ATCGAGGGTATAATGGTAATTCTATAAACCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAA
AATGGTAATTCTATAA
Found at i:57284292 original size:40 final size:39
Alignment explanation
Indices: 57284248--57284373 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
57284238 GGGACTCAAC
*
57284248 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
57284288 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
57284328 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
57284368 CCGGAT
1 CCGGAT
57284374 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:57284332 original size:80 final size:80
Alignment explanation
Indices: 57284187--57284373 Score: 195
Period size: 80 Copynumber: 2.3 Consensus size: 80
57284177 GCTACACATT
* * * *
57284187 CAAATGCCTTCGGGACATAGCCTGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
57284251 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
57284267 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
57284330 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
57284348 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
57284374 ATCATTCGAA
Statistics
Matches: 89, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 6 0.07
80 71 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:57292365 original size:40 final size:39
Alignment explanation
Indices: 57292321--57292446 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
57292311 GGGACTCAAC
*
57292321 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
57292361 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
57292401 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
57292441 CCGGAT
1 CCGGAT
57292447 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:57292405 original size:80 final size:80
Alignment explanation
Indices: 57292260--57292446 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
57292250 GCTACACATT
* * *
57292260 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
57292324 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
57292340 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
57292403 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
57292421 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
57292447 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:57299056 original size:49 final size:49
Alignment explanation
Indices: 57298995--57299398 Score: 665
Period size: 49 Copynumber: 8.3 Consensus size: 49
57298985 ATGTATGAGA
57298995 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
57299044 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
57299093 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
57299142 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
57299191 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
57299240 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
57299289 TATATATATGTGATAAGGCCTAATGGCCAATGTGAT-AATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
57299337 --TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
57299384 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
57299399 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 16, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
46 30 0.09
47 19 0.06
48 11 0.03
49 276 0.82
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:57301590 original size:40 final size:40
Alignment explanation
Indices: 57301522--57301820 Score: 499
Period size: 40 Copynumber: 7.5 Consensus size: 40
57301512 GAGAATTGAG
* * *
57301522 AGTGATATATCCGGACTAAGTTCTGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
* *
57301562 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
* *
57301602 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
57301642 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
* *
57301682 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
57301722 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
*
57301762 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
*
57301802 AGTGATGTATCCGTGCTAA
1 AGTGATGTATCCGGGCTAA
57301821 ACACCGGAGA
Statistics
Matches: 246, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 246 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCT
Found at i:57304345 original size:49 final size:49
Alignment explanation
Indices: 57304284--57304688 Score: 647
Period size: 49 Copynumber: 8.3 Consensus size: 49
57304274 ATGTATGAGA
57304284 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
57304333 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
57304382 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
57304431 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
57304480 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
57304529 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
57304578 TATATATATGTGATAAGGCCTAATGGCCAAAGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
57304627 --TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
57304674 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
57304689 TCCCGAAGGG
Statistics
Matches: 338, Mismatches: 16, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 51 0.15
48 1 0.00
49 286 0.85
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:57306582 original size:40 final size:40
Alignment explanation
Indices: 57306512--57306719 Score: 215
Period size: 40 Copynumber: 5.2 Consensus size: 40
57306502 CGGGATTTAA
** * *
57306512 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
*
57306551 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGAT-TTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGG-TCTTAGC
* *
57306591 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
57306631 CCGGATATAGTAACTCGCATAAATGCATTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
57306671 CCGGATATAGTCACTTAACACAAAAGCTTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
57306712 CCGGATAT
1 CCGGATAT
57306720 CATTCGAATA
Statistics
Matches: 139, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.12
40 95 0.68
41 28 0.20
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57306633 original size:80 final size:80
Alignment explanation
Indices: 57306498--57306719 Score: 254
Period size: 80 Copynumber: 2.8 Consensus size: 80
57306488 GAATCACGTA
** * *
57306498 CCTTCGGGATTTA-ACCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATAT-G
1 CCTTCGGGATTTAGACCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
*
57306560 ATCACTAGCATAAATG
66 -TAACTAGCATAAATG
* * * *
57306576 CCTTCGGGATTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTTTTGGCCCGGATATAG
1 CCTTCGGGATTTAGACCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
*
57306641 TAACTCGCATAAATG
66 TAACTAGCATAAATG
* * * * *
57306656 CATTC-GGATCTTAGTCCGGATATAGTCACTTAACACAAAAGCTTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGAT-TTAGACCGGATATAGTCAC-TAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
57306720 CATTCGAATA
Statistics
Matches: 122, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
78 13 0.11
79 21 0.17
80 59 0.48
81 29 0.24
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (80 bp):
CCTTCGGGATTTAGACCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
TAACTAGCATAAATG
Found at i:57314677 original size:40 final size:40
Alignment explanation
Indices: 57314607--57314814 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
57314597 CGGGATTTAA
** * *
57314607 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
57314646 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
57314686 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
57314726 CCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** *
57314766 CCGGATATAGTCACTTAACACAAAAACCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
57314807 CCGGATAT
1 CCGGATAT
57314815 CATTCGAATA
Statistics
Matches: 137, Mismatches: 28, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 15 0.11
40 95 0.69
41 27 0.20
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57321068 original size:17 final size:18
Alignment explanation
Indices: 57321032--57321069 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
57321022 ACTAAGGCAT
57321032 ATTAAACACAAACAATAA
1 ATTAAACACAAACAATAA
57321050 ATTAAGACAC-AAC-ATAA
1 ATTAA-ACACAAACAATAA
57321067 ATT
1 ATT
57321070 CGACTGTAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 8 0.42
19 4 0.21
ACGTcount: A:0.61, C:0.16, G:0.03, T:0.21
Consensus pattern (18 bp):
ATTAAACACAAACAATAA
Found at i:57321376 original size:20 final size:19
Alignment explanation
Indices: 57321351--57321389 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
57321341 TAGCTCAACG
57321351 AGCTGAATTAAGCTCAAATA
1 AGCTGAATTAAGCT-AAATA
*
57321371 AGCTGAATTGAGCTAAATA
1 AGCTGAATTAAGCTAAATA
57321390 GAGATCGACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.26
Consensus pattern (19 bp):
AGCTGAATTAAGCTAAATA
Found at i:57322780 original size:2 final size:2
Alignment explanation
Indices: 57322773--57322802 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
57322763 CGGCTCTTGC
57322773 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57322803 TTGCACATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:57323651 original size:78 final size:78
Alignment explanation
Indices: 57323513--57323728 Score: 233
Period size: 78 Copynumber: 2.7 Consensus size: 78
57323503 CGAATGATAT
* * * * **
57323513 CCGGGCTAAGTCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGCCCGAAGGCATTTGTG-TGAGTTACTATATCCGGGTTAAG-TCCGAAGGCATTTG
*
57323578 TGCGAGTTACTA-ATT
64 TGCGAGTTACTATA-A
* *
57323593 CC-GGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGTTAAGT-CCGAAGGCATTTGT
57323657 GCGAGTTACTATAA
65 GCGAGTTACTATAA
* * *
57323671 CCGGGCTATGTCCCGAAGGCATTTGAGTGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
57323729 TATGTGATTC
Statistics
Matches: 116, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
77 1 0.01
78 45 0.39
79 40 0.34
80 30 0.26
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTATAA
Found at i:57323709 original size:40 final size:40
Alignment explanation
Indices: 57323513--57323702 Score: 194
Period size: 40 Copynumber: 4.8 Consensus size: 40
57323503 CGAATGATAT
* * * *
57323513 CCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTATAA
* * *
57323553 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGTGAGTTACTATA-A
*
57323593 CC-GGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
* *
57323630 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
* *
57323671 CCGGGCTATGTCCCGAAGGCATTTGAGTGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGT
57323703 AGCTATATCC
Statistics
Matches: 127, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
38 26 0.20
39 13 0.10
40 71 0.56
41 17 0.13
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
Found at i:57331844 original size:79 final size:79
Alignment explanation
Indices: 57331704--57331925 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 79
57331694 TATTCGAATG
* * * **
57331704 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGC
57331769 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
57331785 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGC
57331848 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * *
57331864 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
57331926 TATGTGATTC
Statistics
Matches: 122, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 64 0.52
80 45 0.37
81 12 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:57331906 original size:40 final size:40
Alignment explanation
Indices: 57331704--57331911 Score: 262
Period size: 40 Copynumber: 5.2 Consensus size: 40
57331694 TATTCGAATG
* * *
57331704 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
57331745 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
57331785 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
57331824 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
57331864 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
57331904 ATATCCGG
1 ATATCCGG
57331912 TTAAATTCCG
Statistics
Matches: 147, Mismatches: 14, Indels: 13
0.84 0.08 0.07
Matches are distributed among these distances:
39 37 0.25
40 81 0.55
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:57335434 original size:40 final size:40
Alignment explanation
Indices: 57335272--57335437 Score: 183
Period size: 40 Copynumber: 4.2 Consensus size: 40
57335262 TCTTCGGAAT
* * *
57335272 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * * ** * *
57335311 TTAACCTGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
57335351 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
57335391 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
57335431 TTAGCCC
1 TTAGCCC
57335438 AGGTATCATT
Statistics
Matches: 102, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 3 0.03
40 98 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:57339239 original size:54 final size:54
Alignment explanation
Indices: 57339056--57339239 Score: 147
Period size: 55 Copynumber: 3.4 Consensus size: 54
57339046 CATCTCTTGA
** * * * * *
57339056 CATGGTCTTATGTGGTGTCCTTGCCTTAT-GAACTCACCATTGCCATGCCTTGG
1 CATGGTCTTACATGGTATCCTTGCCTTATAGAACTTAACAATGCCATGCCTTTG
* * * * ** * * * *
57339109 GATAGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATGTCACGTC-TTG
1 CATGGTCTTACATGGTATCCTTGCCTTATAG-AACTTAACAATGCCATGCCTTTG
* * *
57339163 ACATGGTCTTACATGATTTCCTTGCCTTGTAGAACTTAACAATGCCATGCCTTTG
1 -CATGGTCTTACATGGTATCCTTGCCTTATAGAACTTAACAATGCCATGCCTTTG
*
57339218 CATGGTCTTACTTGGTATCCTT
1 CATGGTCTTACATGGTATCCTT
57339240 AAACCCTAAT
Statistics
Matches: 95, Mismatches: 32, Indels: 7
0.71 0.24 0.05
Matches are distributed among these distances:
53 22 0.23
54 35 0.37
55 38 0.40
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.39
Consensus pattern (54 bp):
CATGGTCTTACATGGTATCCTTGCCTTATAGAACTTAACAATGCCATGCCTTTG
Found at i:57344075 original size:31 final size:31
Alignment explanation
Indices: 57344037--57344105 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
57344027 CCACATTGAG
57344037 GACACTCAGGCCTATCAGGCTGAATACTGCC
1 GACACTCAGGCCTATCAGGCTGAATACTGCC
57344068 GACACTCAGGCCTATCAGGCTGAATACTGCC
1 GACACTCAGGCCTATCAGGCTGAATACTGCC
*
57344099 AACACTC
1 GACACTC
57344106 GCAATTGAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.28, C:0.33, G:0.20, T:0.19
Consensus pattern (31 bp):
GACACTCAGGCCTATCAGGCTGAATACTGCC
Found at i:57346482 original size:55 final size:54
Alignment explanation
Indices: 57346350--57346552 Score: 212
Period size: 55 Copynumber: 3.8 Consensus size: 54
57346340 TTTTTTAAAC
* ** * *
57346350 TTACCATTGCCATGTGTTGACATGGTCTTACGTGGTATCCTTG-CTTAT-GAGC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAGT
* * * * *
57346402 TCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGT
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-AGT
* * * * * * *
57346457 TTATCAATGCCATGTCTTGAAATGGTCTTACATGATTTCCTTGCCTTGTAGAAT
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAGT
* *
57346511 TTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
57346553 AGACCTTAAT
Statistics
Matches: 121, Mismatches: 27, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
52 36 0.30
53 5 0.04
54 38 0.31
55 42 0.35
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.38
Consensus pattern (54 bp):
TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAGT
Found at i:57349659 original size:44 final size:44
Alignment explanation
Indices: 57349605--57349689 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 44
57349595 TATGTATGAG
*
57349605 GCATCCGAGCTCATTGAGTTGGTCCAAGTTCATTATGGATGTGA
1 GCATCCGAGCTCATTGAGTTGGTCCAAGTTCATTATAGATGTGA
* **
57349649 GCATCCGAGCTCGTTGAGTTGGTCTGAGTTCATTATAGATG
1 GCATCCGAGCTCATTGAGTTGGTCCAAGTTCATTATAGATG
57349690 CGGTACATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (44 bp):
GCATCCGAGCTCATTGAGTTGGTCCAAGTTCATTATAGATGTGA
Found at i:57354612 original size:46 final size:46
Alignment explanation
Indices: 57354545--57354722 Score: 202
Period size: 46 Copynumber: 3.8 Consensus size: 46
57354535 TGTAACCCGC
*
57354545 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGATGTTCGCAT
* **
57354591 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG--T--TCGCAT
* **
57354641 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
* *
57354684 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
57354723 CTCAACCATC
Statistics
Matches: 109, Mismatches: 15, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 5 0.05
46 62 0.57
47 29 0.27
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:57354664 original size:93 final size:93
Alignment explanation
Indices: 57354552--57354723 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
57354542 CGCCCATAAG
** *
57354552 CGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTC
57354616 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
57354645 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
57354710 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
57354724 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:57361293 original size:18 final size:18
Alignment explanation
Indices: 57361270--57361305 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
57361260 CTACAGTAAG
57361270 GAAGGGTGTGGTTACACA
1 GAAGGGTGTGGTTACACA
57361288 GAAGGGTGTGGTTACACA
1 GAAGGGTGTGGTTACACA
57361306 CCTTTTTCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.39, T:0.22
Consensus pattern (18 bp):
GAAGGGTGTGGTTACACA
Found at i:57363401 original size:28 final size:28
Alignment explanation
Indices: 57363361--57363439 Score: 106
Period size: 28 Copynumber: 2.8 Consensus size: 28
57363351 GCAATCAAAT
* * *
57363361 ATGGCACTCAGTGTACGAAATATTGAGA
1 ATGGAACTTAGTGTGCGAAATATTGAGA
*
57363389 ATGGAACTTAGTGTGCGAGATATTGAGA
1 ATGGAACTTAGTGTGCGAAATATTGAGA
57363417 AT-GACACTTAGTGTGCGAAATAT
1 ATGGA-ACTTAGTGTGCGAAATAT
57363440 CGAATGATTC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
27 2 0.04
28 43 0.96
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (28 bp):
ATGGAACTTAGTGTGCGAAATATTGAGA
Found at i:57364801 original size:44 final size:46
Alignment explanation
Indices: 57364744--57364862 Score: 136
Period size: 44 Copynumber: 2.6 Consensus size: 46
57364734 ATATGTGCGT
57364744 GCTGATGCATGTCCCAGACATGTCTTACACCAGCACAACTCT-T-A-
1 GCTGATGCATGTCCCAGACATGTCTTACACCAGC-CAACTCTGTCAG
* ** * * *
57364788 GCTGATGCGTGTCCCAGACACATCTTACACCGGCTATCTCTGTCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACCAGCCAACTCTGTC-AG
*
57364835 GCCGATGCATGTCCCAGACATGTCTTAC
1 GCTGATGCATGTCCCAGACATGTCTTAC
57364863 TCTGGCACTC
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
43 5 0.08
44 31 0.51
46 1 0.02
47 24 0.39
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACCAGCCAACTCTGTCAG
Found at i:57364922 original size:48 final size:47
Alignment explanation
Indices: 57364704--57365015 Score: 203
Period size: 47 Copynumber: 6.6 Consensus size: 47
57364694 GTCGATGTCG
* * * *
57364704 TGTCCCAGACATGGTCTTACACTGGCTCTCATATGTGCGTGCTGATG-CA
1 TGTCCCAGACAT-GTCTTACACTGGCTCTCATCT-T-TGTGCCGAAGCCA
** * * * * * *
57364753 TGTCCCAGACATGTCTTACACCAG--CACAACTCTT-AGCTGATG-CG
1 TGTCCCAGACATGTCTTACACTGGCTCTCATCT-TTGTGCCGAAGCCA
** * * * * *
57364797 TGTCCCAGACACATCTTACACCGGCTATC-TCTGTCGAGGCCGATG-CA
1 TGTCCCAGACATGTCTTACACTGGCTCTCATCT-TTG-TGCCGAAGCCA
* * *
57364844 TGTCCCAGACATGTCTTACTCTGGCACTCATCTTTGTGCCGACGCCA
1 TGTCCCAGACATGTCTTACACTGGCTCTCATCTTTGTGCCGAAGCCA
* * *
57364891 TGTCCCAGACATGGTCTTACACTGGCTCTCATAATATG-GCTGAAG-CA
1 TGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTTTGTGCCGAAGCCA
* * * *
57364938 TGTCCCAGACATGTCTTACACTAGCCCTCATC-TAGATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTGGCTCTCATCTTTG-TGCCGAAGCCA
57364985 TGTCCCAGACATGGTCTTACACTGGCTCTCA
1 TGTCCCAGACAT-GTCTTACACTGGCTCTCA
57365016 AATCACCCAA
Statistics
Matches: 207, Mismatches: 44, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
44 30 0.14
45 3 0.01
46 34 0.16
47 74 0.36
48 51 0.25
49 15 0.07
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.27
Consensus pattern (47 bp):
TGTCCCAGACATGTCTTACACTGGCTCTCATCTTTGTGCCGAAGCCA
Found at i:57364948 original size:94 final size:94
Alignment explanation
Indices: 57364704--57365015 Score: 302
Period size: 94 Copynumber: 3.3 Consensus size: 94
57364694 GTCGATGTCG
* *
57364704 TGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATGTGCGTGCTGATGCATGTCCCAGACATGTC
1 TGTCCCAGACATGGTCTTACACTGGCTCTCATAATAT--G-GCTGAAGCATGTCCCAGACATGTC
* * * * * *
57364768 TTACACCAGCAC-AACTCT-TA-GCTGATG-CG
63 TTACACTAGCACTCA-TCTAGATGCCGACGCCA
** * * * *
57364797 TGTCCCAGACA-CATCTTACACCGGCTATCTC-T-GTCGA-GGCCGATGCATGTCCCAGACATGT
1 TGTCCCAGACATGGTCTTACACTGGC--TCTCATAAT--ATGGCTGAAGCATGTCCCAGACATGT
* * *
57364858 CTTACTCTGGCACTCATCTTTG-TGCCGACGCCA
62 CTTACACTAGCACTCATC-TAGATGCCGACGCCA
57364891 TGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCTGAAGCATGTCCCAGACATGTCTTA
1 TGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCTGAAGCATGTCCCAGACATGTCTTA
* *
57364956 CACTAGCCCTCATCTAGATGCCGATGCCA
66 CACTAGCACTCATCTAGATGCCGACGCCA
57364985 TGTCCCAGACATGGTCTTACACTGGCTCTCA
1 TGTCCCAGACATGGTCTTACACTGGCTCTCA
57365016 AATCACCCAA
Statistics
Matches: 180, Mismatches: 25, Indels: 27
0.78 0.11 0.12
Matches are distributed among these distances:
91 34 0.19
92 14 0.08
93 25 0.14
94 95 0.53
95 12 0.07
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.27
Consensus pattern (94 bp):
TGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCTGAAGCATGTCCCAGACATGTCTTA
CACTAGCACTCATCTAGATGCCGACGCCA
Found at i:57373163 original size:80 final size:80
Alignment explanation
Indices: 57373079--57373227 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
57373069 TATGGTAACC
* * * *
57373079 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
57373143 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
57373159 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
57373224 CCGG
66 CCGG
57373228 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:57373169 original size:40 final size:38
Alignment explanation
Indices: 57373120--57373227 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
57373110 ATCACGATTT
*
57373120 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
57373160 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
57373200 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
57373228 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:57381280 original size:80 final size:80
Alignment explanation
Indices: 57381196--57381344 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
57381186 TATGGTAACC
* * * *
57381196 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
57381260 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
57381276 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
57381341 CCGG
66 CCGG
57381345 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:57381286 original size:40 final size:38
Alignment explanation
Indices: 57381237--57381344 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
57381227 ATCACGATTT
*
57381237 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
57381277 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
57381317 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
57381345 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:57390190 original size:40 final size:40
Alignment explanation
Indices: 57390146--57390362 Score: 240
Period size: 40 Copynumber: 5.5 Consensus size: 40
57390136 AGCATTCGAA
* *
57390146 TGATTATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAG
1 TGATTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
*
57390186 TGATTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGATTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
** *
57390226 TGATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TGATTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* *
57390266 TTG-TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG
1 -TGATTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* ** * * * * * *
57390306 TTACCAAATCCGGGTTAAGACTCGAAGGCAATTGTGCTTG
1 TGATTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* *
57390346 TGGTTGTATCC-GGCTAA
1 TGATTATATCCGGGCTAA
57390363 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 6 0.04
40 144 0.95
41 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
TGATTATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
Found at i:57398442 original size:40 final size:40
Alignment explanation
Indices: 57398368--57398579 Score: 232
Period size: 40 Copynumber: 5.3 Consensus size: 40
57398358 ATTCGAATGA
*
57398368 TATATCCGGGCTAAGTCCC-AAGGCATTTATGCTAGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGAT
*
57398407 TATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGAT
** *
57398447 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-T
1 TATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGAT
* * * *
57398487 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTAC
1 TATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGAT
* * * * * * * *
57398527 CAAATCCGGGTTAAGACTCGAAGGCAATTGTGCTTGTGGT
1 TATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGAT
*
57398567 TGTATCC-GGCTAA
1 TATATCCGGGCTAA
57398580 ATTCCGAAGA
Statistics
Matches: 148, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
39 25 0.17
40 121 0.82
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGAT
Found at i:57410281 original size:42 final size:42
Alignment explanation
Indices: 57410234--57410353 Score: 118
Period size: 43 Copynumber: 2.8 Consensus size: 42
57410224 CACATAATGC
* ** *
57410234 CATATCAATGCCATGTCCTAGATATGGTCTGACATGAGATCT
1 CATATCAATGCCATATCCTAGATATGGTCTGACACAAAATCT
* *
57410276 CATATCAATGCCA-A-CAGCTCAGCTATGGTCTTACACAAAATCT
1 CATATCAATGCCATATC--CT-AGATATGGTCTGACACAAAATCT
* * *
57410319 CATATCGATGCCATATCCCAGATATGGTCTTACAC
1 CATATCAATGCCATATCCTAGATATGGTCTGACAC
57410354 GTAACCTCAA
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
40 1 0.02
42 30 0.47
43 31 0.48
44 1 0.02
45 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (42 bp):
CATATCAATGCCATATCCTAGATATGGTCTGACACAAAATCT
Found at i:57410319 original size:43 final size:42
Alignment explanation
Indices: 57410217--57410353 Score: 116
Period size: 42 Copynumber: 3.2 Consensus size: 42
57410207 ACTCGGGATA
* *
57410217 TCTTACACACATAATGC-CATATCAATGCCA-TGTCCTAGATATGG
1 TCTTACACA-A-AAT-CTCATATCAATGCCACAG-CCCAGATATGG
* ** * * *
57410261 TCTGACATGAGATCTCATATCAATGCCAACAGCTCAGCTATGG
1 TCTTACACAAAATCTCATATCAATGCC-ACAGCCCAGATATGG
* * *
57410304 TCTTACACAAAATCTCATATCGATGCCATATCCCAGATATGG
1 TCTTACACAAAATCTCATATCAATGCCACAGCCCAGATATGG
57410346 TCTTACAC
1 TCTTACAC
57410354 GTAACCTCAA
Statistics
Matches: 73, Mismatches: 17, Indels: 8
0.74 0.17 0.08
Matches are distributed among these distances:
41 1 0.01
42 33 0.45
43 32 0.44
44 7 0.10
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.28
Consensus pattern (42 bp):
TCTTACACAAAATCTCATATCAATGCCACAGCCCAGATATGG
Found at i:57414126 original size:28 final size:27
Alignment explanation
Indices: 57414063--57414132 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
57414053 ATAGTGAGTC
57414063 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
57414090 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
57414118 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57414133 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:57426648 original size:28 final size:29
Alignment explanation
Indices: 57426591--57426667 Score: 95
Period size: 28 Copynumber: 2.7 Consensus size: 29
57426581 AAAAAATAGA
* * *
57426591 CACTAAGGCTCACATAT-ACATATCCTGC
1 CACTAAGGCTCACATATAACAGATACAGC
57426619 CACTAAGGCTCACATATAACAGA-ACAGC
1 CACTAAGGCTCACATATAACAGATACAGC
* *
57426647 CACCAAGGCTCGCATATAACA
1 CACTAAGGCTCACATATAACA
57426668 AAATTTTCCA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 39 0.91
29 4 0.09
ACGTcount: A:0.38, C:0.31, G:0.13, T:0.18
Consensus pattern (29 bp):
CACTAAGGCTCACATATAACAGATACAGC
Found at i:57427031 original size:55 final size:56
Alignment explanation
Indices: 57426967--57427072 Score: 169
Period size: 56 Copynumber: 1.9 Consensus size: 56
57426957 TTTTCATATG
57426967 CCATATGATGCCATAGCAA-ATGGCTAGGCCTTACACTATATGGACTTCTCATTCC
1 CCATATGATGCCATAGCAATATGGCTAGGCCTTACACTATATGGACTTCTCATTCC
* ** *
57427022 CCATATGATGCCTTATTAATATGGCTAGGCCTTACACTATATGGTCTTCTC
1 CCATATGATGCCATAGCAATATGGCTAGGCCTTACACTATATGGACTTCTC
57427073 TTGCCATGGC
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
55 16 0.35
56 30 0.65
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (56 bp):
CCATATGATGCCATAGCAATATGGCTAGGCCTTACACTATATGGACTTCTCATTCC
Found at i:57434435 original size:42 final size:42
Alignment explanation
Indices: 57434389--57434516 Score: 247
Period size: 42 Copynumber: 3.0 Consensus size: 42
57434379 CATCAGACCT
57434389 TATACTTAACTCAAGGGAAGTCTCCCTATCTTCCTTTAGCCC
1 TATACTTAACTCAAGGGAAGTCTCCCTATCTTCCTTTAGCCC
57434431 TATACTTAACTCAAGGGAAGTCTCCCTATCTTCCTTTAGCCC
1 TATACTTAACTCAAGGGAAGTCTCCCTATCTTCCTTTAGCCC
*
57434473 TATACTTAACTCAAGGGAAGTCTCCCTATCTTCCTTTAGTCC
1 TATACTTAACTCAAGGGAAGTCTCCCTATCTTCCTTTAGCCC
57434515 TA
1 TA
57434517 CTCTCCTGAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 85 1.00
ACGTcount: A:0.24, C:0.30, G:0.12, T:0.34
Consensus pattern (42 bp):
TATACTTAACTCAAGGGAAGTCTCCCTATCTTCCTTTAGCCC
Found at i:57437183 original size:48 final size:48
Alignment explanation
Indices: 57437125--57437728 Score: 1001
Period size: 48 Copynumber: 12.4 Consensus size: 48
57437115 ATATACACAC
* *
57437125 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
57437173 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
57437221 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
57437269 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
* *
57437319 ATCTCATACTTATTTCACATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
57437367 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
57437415 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
57437465 TTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
* * *
57437515 TTCTCATGCATATTTCACATTAGCCATTCGGCTTTCCCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
57437563 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57437611 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
57437659 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
57437709 TTCTCATACATATTTCACAT
1 ATCTCATACATATTTCACAT
57437729 ATTCACTACA
Statistics
Matches: 526, Mismatches: 24, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
48 358 0.68
50 168 0.32
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:57437380 original size:146 final size:144
Alignment explanation
Indices: 57437125--57437728 Score: 1001
Period size: 146 Copynumber: 4.1 Consensus size: 144
57437115 ATATACACAC
* *
57437125 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
57437190 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
57437255 TACCACATATACAT
131 TACCACATATACAT
*
57437269 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATATCTCATACTTATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTT
* * *
57437334 CACATTAGCCATTTGGCTTTACCACATATACATATCTCATATATATTTCACAGTAGCCATTCGGC
64 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
57437399 TTTACCACATATACAT
129 TTTACCACATATACAT
*
57437415 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTT
* *
57437480 CACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATGCATATTTCACATTAGCCATTCG
64 CACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTTCACATTAGCCATTCG
*
57437545 GCTTTCCCACATATACAT
127 GCTTTACCACATATACAT
* * *
57437563 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTGCCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
57437628 CATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
57437693 TACCACATATATACAT
131 TACCAC--ATATACAT
*
57437709 TTCTCATACATATTTCACAT
1 ATCTCATACATATTTCACAT
57437729 ATTCACTACA
Statistics
Matches: 429, Mismatches: 25, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
144 83 0.19
146 258 0.60
148 88 0.21
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.36
Consensus pattern (144 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
TACCACATATACAT
Found at i:57444404 original size:39 final size:39
Alignment explanation
Indices: 57444341--57444577 Score: 366
Period size: 39 Copynumber: 6.1 Consensus size: 39
57444331 AATTTTATTA
* *
57444341 CCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
57444380 CCAGCACAAAGCCTGCGGGTCTTTATCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
57444419 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
57444458 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * * *
57444497 CCAGCACGAAGCCTGCGGGTCTTTGGCCCAGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
57444536 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
57444575 CCA
1 CCA
57444578 TACACATTTC
Statistics
Matches: 179, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 179 1.00
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:57444548 original size:117 final size:117
Alignment explanation
Indices: 57444336--57444577 Score: 403
Period size: 117 Copynumber: 2.1 Consensus size: 117
57444326 CCCGAAATTT
*
57444336 TATTACCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
1 TATTTCCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
* * * *
57444401 TTTATCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
66 TTTAGCCCAGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATA
* *
57444453 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTC
1 TATTTCCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
* *
57444518 TTTGGCCCAGATATATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATA
66 TTTAGCCCAGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATA
57444570 TATTTCCA
1 TATTTCCA
57444578 TACACATTTC
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 116 1.00
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (117 bp):
TATTTCCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
TTTAGCCCAGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATA
Found at i:57446317 original size:14 final size:14
Alignment explanation
Indices: 57446298--57446324 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
57446288 AAACACGATA
57446298 ATTTCACATATAAT
1 ATTTCACATATAAT
57446312 ATTTCACATATAA
1 ATTTCACATATAA
57446325 CAAACATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (14 bp):
ATTTCACATATAAT
Found at i:57446467 original size:27 final size:27
Alignment explanation
Indices: 57446409--57446467 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
57446399 GGTTGTTACA
* *
57446409 AAAATTACCATAATGCCCCTGTAGGGT
1 AAAATTACCATAATACCCCTATAGGGT
** *
57446436 AAAATTACTGTAATACCCCTATATGGT
1 AAAATTACCATAATACCCCTATAGGGT
*
57446463 GAAAT
1 AAAAT
57446468 GGTGATTCTG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (27 bp):
AAAATTACCATAATACCCCTATAGGGT
Found at i:57446982 original size:32 final size:32
Alignment explanation
Indices: 57446911--57446982 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
57446901 CCAAGGCCCT
* * * *
57446911 AACTGATATTGATTCTGATATGGGCTAGACCC
1 AACTGATAGTGATTCTAAGATGGGCTAGACAC
*
57446943 AACTGATAGTGATTCTAAGATGGGCTAGGCAC
1 AACTGATAGTGATTCTAAGATGGGCTAGACAC
*
57446975 AATTGATA
1 AACTGATA
57446983 CTATGATGGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (32 bp):
AACTGATAGTGATTCTAAGATGGGCTAGACAC
Found at i:57449418 original size:40 final size:40
Alignment explanation
Indices: 57449127--57449411 Score: 439
Period size: 40 Copynumber: 7.2 Consensus size: 40
57449117 AACTCAAGTA
* * *
57449127 CCTTCGGGATTTAG-TCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
57449166 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
57449206 CTTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
57449246 CCTTCGGGACTTGGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
57449286 CCTTCGGGACTTAGCCCGGATATAGTAA-TCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
57449325 CCTTTGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
57449365 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
57449405 CCTTCGG
1 CCTTCGG
57449412 ATCTTAGTTC
Statistics
Matches: 226, Mismatches: 18, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
39 49 0.22
40 177 0.78
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:57454023 original size:30 final size:30
Alignment explanation
Indices: 57453989--57454049 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
57453979 TCCTTAACTC
57453989 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
57454019 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
57454049 A
1 A
57454050 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:57458732 original size:24 final size:24
Alignment explanation
Indices: 57458700--57458787 Score: 88
Period size: 25 Copynumber: 3.6 Consensus size: 24
57458690 TATAACTGGA
* *
57458700 GGCATAGCCTCTTTTAAT-AACTGG
1 GGCAAAGCC-CTTTTAATAAACTAG
*
57458724 GGCAAAGCCCTTTTTGATAAACTAG
1 GGCAAAGCCC-TTTTAATAAACTAG
* *
57458749 GGCCAAGCCCTTTTCAGTAAACTAG
1 GGCAAAGCCCTTTT-AATAAACTAG
*
57458774 GGCAAAGCTCTTTT
1 GGCAAAGCCCTTTT
57458788 TGCACTTCCT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
23 1 0.02
24 18 0.34
25 34 0.64
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (24 bp):
GGCAAAGCCCTTTTAATAAACTAG
Found at i:57458860 original size:21 final size:21
Alignment explanation
Indices: 57458835--57458883 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
57458825 TATAATGAGT
* *
57458835 ATATCATGTGCATCTCATAAC
1 ATATCATGCGCATATCATAAC
*
57458856 ATATCATGCGCATATCATATC
1 ATATCATGCGCATATCATAAC
57458877 ATATCAT
1 ATATCAT
57458884 ATCATGTAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (21 bp):
ATATCATGCGCATATCATAAC
Found at i:57458969 original size:25 final size:24
Alignment explanation
Indices: 57458926--57458973 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
57458916 ATAATAAATC
* **
57458926 CCTAGGGGCATAATGGTCACTTTTA
1 CCTAGGGGCAAAACAGTCA-TTTTA
57458951 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
57458974 CATATTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
CCTAGGGGCAAAACAGTCATTTTA
Found at i:57464530 original size:40 final size:40
Alignment explanation
Indices: 57464461--57464668 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
57464451 CGGGATTTAA
** * *
57464461 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
57464500 CCAGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
57464540 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
57464580 CCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
57464620 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
57464661 CCGGATAT
1 CCGGATAT
57464669 CATTTTCATT
Statistics
Matches: 136, Mismatches: 29, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
39 14 0.10
40 94 0.69
41 28 0.21
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57471004 original size:13 final size:13
Alignment explanation
Indices: 57470986--57471020 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
57470976 TCACATTGTT
57470986 TTAGTTTTTTTTG
1 TTAGTTTTTTTTG
*
57470999 TTAGTTTCTTTTG
1 TTAGTTTTTTTTG
57471012 TATAGTTTT
1 T-TAGTTTT
57471021 GAATTGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.11, C:0.03, G:0.14, T:0.71
Consensus pattern (13 bp):
TTAGTTTTTTTTG
Found at i:57474645 original size:28 final size:28
Alignment explanation
Indices: 57474612--57474686 Score: 98
Period size: 28 Copynumber: 2.7 Consensus size: 28
57474602 ATTGCATGAC
* *
57474612 TATGAATGTGATTGGGCTTGACT-GGCCA
1 TATGAATGAGATTGGGCCTGA-TGGGCCA
* *
57474640 TATGAATGCGATTGAGCCTGATGGGCCA
1 TATGAATGAGATTGGGCCTGATGGGCCA
57474668 TATGAATGAGATTGGGCCT
1 TATGAATGAGATTGGGCCT
57474687 AAAGGGGCCA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
27 1 0.02
28 40 0.98
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.29
Consensus pattern (28 bp):
TATGAATGAGATTGGGCCTGATGGGCCA
Found at i:57481984 original size:16 final size:16
Alignment explanation
Indices: 57481963--57482001 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
57481953 TCGACAAATC
*
57481963 CCGAAATATTGAAAAG
1 CCGAAATACTGAAAAG
*
57481979 CCGAAATGCTGAAAAG
1 CCGAAATACTGAAAAG
*
57481995 CCAAAAT
1 CCGAAAT
57482002 TTTGGCTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.18, G:0.18, T:0.15
Consensus pattern (16 bp):
CCGAAATACTGAAAAG
Found at i:57488974 original size:28 final size:29
Alignment explanation
Indices: 57488907--57489007 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
57488897 ATAGTGAATC
*
57488907 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
57488936 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
57488964 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
57488994 CGCACACTTAGTGC
1 CGCACACTTAGTGC
57489008 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:57496827 original size:28 final size:29
Alignment explanation
Indices: 57496760--57496860 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
57496750 ATAGTGAATC
*
57496760 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
57496789 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
57496817 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
57496847 CGCACACTTAGTGC
1 CGCACACTTAGTGC
57496861 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:57498935 original size:64 final size:65
Alignment explanation
Indices: 57498829--57498958 Score: 217
Period size: 64 Copynumber: 2.0 Consensus size: 65
57498819 CAGTCCATGC
* *
57498829 ATCAGATAATAATAACATGGCATGCAGCAAATAGTAACAGTCAAACATGCATTCA-GTCAACCTT
1 ATCAGATAATAATAACACGGCATGCAGCAAATAGTAACAGTCAAACATGCAATCAGGTCAACCTT
* *
57498893 ATCAGATAATAATAACACGGCATGCAGTAAATAGTAATAGTCAAACATGCAATCAGGTCAACCTT
1 ATCAGATAATAATAACACGGCATGCAGCAAATAGTAACAGTCAAACATGCAATCAGGTCAACCTT
57498958 A
1 A
57498959 ACCCTAGGGG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
64 51 0.84
65 10 0.16
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (65 bp):
ATCAGATAATAATAACACGGCATGCAGCAAATAGTAACAGTCAAACATGCAATCAGGTCAACCTT
Found at i:57499017 original size:27 final size:26
Alignment explanation
Indices: 57498961--57499017 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
57498951 CAACCTTAAC
* * *
57498961 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
57498987 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
57499014 CCTA
1 CCTA
57499018 TAAAGGAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:57500315 original size:28 final size:29
Alignment explanation
Indices: 57500248--57500348 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
57500238 ATAGTGAATC
*
57500248 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
57500277 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
57500305 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
57500335 CGCACACTTAGTGC
1 CGCACACTTAGTGC
57500349 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:57502412 original size:64 final size:65
Alignment explanation
Indices: 57502322--57502451 Score: 217
Period size: 64 Copynumber: 2.0 Consensus size: 65
57502312 AGTCCCATGC
* *
57502322 ATCAGATAATAATAACATGGCATGCAGCAAATAGTAACAGTCAAACATGCATTCA-GTCAACCTT
1 ATCAGATAATAATAACACGGCATGCAGCAAATAGTAACAGTCAAACATGCAATCAGGTCAACCTT
* *
57502386 ATCAGATAATAATAACACGGCATGCAGTAAATAGTAATAGTCAAACATGCAATCAGGTCAACCTT
1 ATCAGATAATAATAACACGGCATGCAGCAAATAGTAACAGTCAAACATGCAATCAGGTCAACCTT
57502451 A
1 A
57502452 ACCCTAGGGG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
64 51 0.84
65 10 0.16
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.23
Consensus pattern (65 bp):
ATCAGATAATAATAACACGGCATGCAGCAAATAGTAACAGTCAAACATGCAATCAGGTCAACCTT
Found at i:57502510 original size:27 final size:26
Alignment explanation
Indices: 57502454--57502510 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
57502444 CAACCTTAAC
* * *
57502454 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
57502480 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
57502507 CCTA
1 CCTA
57502511 TAAAGGAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:57502781 original size:6 final size:6
Alignment explanation
Indices: 57502761--57502794 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
57502751 TATTGCCTAT
57502761 TTTTTA TTATTTA TTTTTA TTTTTA TTTTTA TTT
1 TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTT
57502795 ATTAACCCGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:57503391 original size:20 final size:20
Alignment explanation
Indices: 57503366--57503403 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
57503356 GTTTATTCGC
*
57503366 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
57503386 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
57503404 TTTGGAGGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:57505071 original size:27 final size:28
Alignment explanation
Indices: 57505025--57505079 Score: 103
Period size: 27 Copynumber: 2.0 Consensus size: 28
57505015 GCGTAGATCA
57505025 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
57505053 CGAAATTA-CCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
57505080 TGATATACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 19 0.70
28 8 0.30
ACGTcount: A:0.47, C:0.24, G:0.11, T:0.18
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:57509235 original size:20 final size:20
Alignment explanation
Indices: 57509210--57509247 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
57509200 GTTTATTCGC
*
57509210 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
57509230 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
57509248 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:57510942 original size:28 final size:28
Alignment explanation
Indices: 57510876--57510933 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
57510866 GCGTAGATCA
57510876 CGAAATTACCC-TAAAGAGCAAAATTAC
1 CGAAATTACCCTTAAAGAGCAAAATTAC
57510903 CGAAATTACCCTTAAAGAGCAAAATTAC
1 CGAAATTACCCTTAAAGAGCAAAATTAC
57510931 CGA
1 CGA
57510934 TATACCCCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 11 0.37
28 19 0.63
ACGTcount: A:0.47, C:0.22, G:0.12, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCTTAAAGAGCAAAATTAC
Found at i:57513402 original size:43 final size:43
Alignment explanation
Indices: 57513339--57513769 Score: 470
Period size: 43 Copynumber: 10.0 Consensus size: 43
57513329 GATATGTGAT
*
57513339 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATATTGGC
* ** * *
57513382 ATCGATATGTGATTATGTGTAAGACCTTGTCTAGGATAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATATTGGC
* * *
57513425 ATCGATATATGATTATGTGTAAGACCACGTCTGGGATGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATATTGGC
* * * *** * *
57513468 ATCAACATGTGATTACGTATAAGACCTTATCTAGGATAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATATTGGC
* *
57513511 ATCGATATGTGATTACATGTAAGACCACGTCTGGGATGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATATTGGC
* * * * * *
57513554 ATCAATATGTGATTACGTGTAAGACCATGTTTAGGACATTGAC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATATTGGC
** *
57513597 ATCGATATGTGATTACGTGTAAGACCTTGTC-GGGATAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATATTGGC
**
57513639 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATATTGGC
* * * *
57513682 ATCAATATGTGATTACGTGTAAGACC-CTGTCTGAGACAGTGGC
1 ATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGATATTGGC
* * * *** *
57513725 ATCAATATGTGATTACATGTATGACCTTATCTAGGATATTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATATTGGC
57513768 AT
1 AT
57513770 TGTAGATATG
Statistics
Matches: 320, Mismatches: 65, Indels: 6
0.82 0.17 0.02
Matches are distributed among these distances:
42 37 0.12
43 283 0.88
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (43 bp):
ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATATTGGC
Found at i:57513491 original size:86 final size:86
Alignment explanation
Indices: 57513339--57513769 Score: 530
Period size: 86 Copynumber: 5.0 Consensus size: 86
57513329 GATATGTGAT
** * *
57513339 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTATGTGTAA
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCAATATGTGATTACGTGTAA
57513404 GACCTTGTCTAGGATAGTGGC
66 GACCTTGTCTAGGATAGTGGC
* * * *
57513425 ATCGATATATGATTATGTGTAAGACCACGTCTGGGATGTTGGCATCAACATGTGATTACGTATAA
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCAATATGTGATTACGTGTAA
*
57513490 GACCTTATCTAGGATAGTGGC
66 GACCTTGTCTAGGATAGTGGC
*
57513511 ATCGATATGTGATTACATGTAAGACCACGTCTGGGATGTTGGCATCAATATGTGATTACGTGTAA
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCAATATGTGATTACGTGTAA
* * * * *
57513576 GACCATGTTTAGGACATTGAC
66 GACCTTGTCTAGGATAGTGGC
** *
57513597 ATCGATATGTGATTACGTGTAAGACCTTGTC-GGGATAG-TGGCATCGATATGTGATTACGTGTA
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGAT-GTTGGCATCAATATGTGATTACGTGTA
** * *
57513660 AGACCACGTCTGGGA-CGTTGGC
65 AGACCTTGTCTAGGATAG-TGGC
* * * *
57513682 ATCAATATGTGATTACGTGTAAGACC-CTGTCTGAGACAG-TGGCATCAATATGTGATTACATGT
1 ATCGATATGTGATTACGTGTAAGACCAC-GTCTGGGA-TGTTGGCATCAATATGTGATTACGTGT
* * *
57513745 ATGACCTTATCTAGGATATTGGC
64 AAGACCTTGTCTAGGATAGTGGC
57513768 AT
1 AT
57513770 TGTAGATATG
Statistics
Matches: 296, Mismatches: 43, Indels: 12
0.84 0.12 0.03
Matches are distributed among these distances:
85 72 0.24
86 224 0.76
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (86 bp):
ATCGATATGTGATTACGTGTAAGACCACGTCTGGGATGTTGGCATCAATATGTGATTACGTGTAA
GACCTTGTCTAGGATAGTGGC
Found at i:57513575 original size:129 final size:129
Alignment explanation
Indices: 57513343--57513769 Score: 522
Period size: 129 Copynumber: 3.3 Consensus size: 129
57513333 TGTGATATCG
*** * * * *
57513343 ATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTATGTGTAAGACC
1 ATATGTGATTACGTGTAAGACCTTATCTAGGATAGTGGCATCGATATGTGATTACGTGTAAGACC
** * * * * *
57513408 TTGTCTAGGATAG-TGGCATCGATATATGATTATGTGTAAGACCACGTCTGGGATGTTGGCATCA
66 ACGTCTGGGAT-GTTGGCATCAATATGTGATTACGTGTAAGACCACGTCTGGGAAGTTGGCATCA
* * *
57513472 ACATGTGATTACGTATAAGACCTTATCTAGGATAGTGGCATCGATATGTGATTACATGTAAGACC
1 ATATGTGATTACGTGTAAGACCTTATCTAGGATAGTGGCATCGATATGTGATTACGTGTAAGACC
* * * * *
57513537 ACGTCTGGGATGTTGGCATCAATATGTGATTACGTGTAAGACCATGTTTAGGACA-TTGACATCG
66 ACGTCTGGGATGTTGGCATCAATATGTGATTACGTGTAAGACCACGTCTGGGA-AGTTGGCATCA
* *
57513601 ATATGTGATTACGTGTAAGACCTTGTC-GGGATAGTGGCATCGATATGTGATTACGTGTAAGACC
1 ATATGTGATTACGTGTAAGACCTTATCTAGGATAGTGGCATCGATATGTGATTACGTGTAAGACC
* *
57513665 ACGTCTGGGACGTTGGCATCAATATGTGATTACGTGTAAGACC-CTGTCTGAGACAG-TGGCATC
66 ACGTCTGGGATGTTGGCATCAATATGTGATTACGTGTAAGACCAC-GTCTGGGA-AGTTGGCATC
57513728 A
129 A
* * *
57513729 ATATGTGATTACATGTATGACCTTATCTAGGATATTGGCAT
1 ATATGTGATTACGTGTAAGACCTTATCTAGGATAGTGGCAT
57513770 TGTAGATATG
Statistics
Matches: 254, Mismatches: 39, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
128 115 0.45
129 139 0.55
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (129 bp):
ATATGTGATTACGTGTAAGACCTTATCTAGGATAGTGGCATCGATATGTGATTACGTGTAAGACC
ACGTCTGGGATGTTGGCATCAATATGTGATTACGTGTAAGACCACGTCTGGGAAGTTGGCATCA
Found at i:57514053 original size:2 final size:2
Alignment explanation
Indices: 57514046--57514072 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
57514036 TAAATGAATG
57514046 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
57514073 TCAGCTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:57516460 original size:28 final size:28
Alignment explanation
Indices: 57516410--57516471 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
57516400 TAGGAAATAG
* *
57516410 TTGGGCCTGATGGGCCACATGAATGTGA
1 TTGGGCCTGATGGGCCACATGAACGAGA
**
57516438 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCACATGAACGAGA
57516466 TTGGGC
1 TTGGGC
57516472 TTAAAGGGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.19, C:0.18, G:0.39, T:0.24
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCACATGAACGAGA
Found at i:57516848 original size:27 final size:26
Alignment explanation
Indices: 57516789--57517127 Score: 236
Period size: 27 Copynumber: 12.6 Consensus size: 26
57516779 TAATAAAGAG
*
57516789 AAATTACTGAAATACCCTCGA-TTGTG
1 AAATTACTGAAATA-CCTCGATTTGTA
*
57516815 AAATTACTAAAATACCTTCGATTTGTA
1 AAATTACTGAAATACC-TCGATTTGTA
* * * *
57516842 AAATTACCGAAATACCCCTAATTTGTG
1 AAATTACTGAAATACCTC-GATTTGTA
* * * *
57516869 AAATTACCGAAACACCCCTGATTTTTA
1 AAATTACTGAAATACCTC-GATTTGTA
* * * *
57516896 AAATTACTAAAATACCCCTAATTTGTG
1 AAATTACTGAAATACCTC-GATTTGTA
* * *
57516923 AAATTACTAAAACACCCTCGACTTGTA
1 AAATTACTGAAATA-CCTCGATTTGTA
* * **
57516950 AAATTACCGAAACACCCTTAATTTGTA
1 AAATTACTGAAATA-CCTCGATTTGTA
*
57516977 AAATTA-TCGAAATACCGTCGATTTGAA
1 AAATTACT-GAAATACC-TCGATTTGTA
57517004 AAATTA-TCGAAATACCTTCGATTTGTA
1 AAATTACT-GAAATACC-TCGATTTGTA
** *
57517031 AAATTACCAAAATACCCTCGATTTTTA
1 AAATTACTGAAATA-CCTCGATTTGTA
* *
57517058 AAATTACCGAAACACCATCGATTTGTA
1 AAATTACTGAAATACC-TCGATTTGTA
* * *
57517085 AAATTATTGAAATACCCTTG-TAGTGTA
1 AAATTACTGAAATA-CCTCGAT-TTGTA
*
57517112 AAATTACCGAAATACC
1 AAATTACTGAAATACC
57517128 ATTGTAGTGT
Statistics
Matches: 255, Mismatches: 47, Indels: 22
0.79 0.15 0.07
Matches are distributed among these distances:
25 2 0.01
26 25 0.10
27 221 0.87
28 7 0.03
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (26 bp):
AAATTACTGAAATACCTCGATTTGTA
Found at i:57516892 original size:54 final size:54
Alignment explanation
Indices: 57516789--57517127 Score: 294
Period size: 54 Copynumber: 6.3 Consensus size: 54
57516779 TAATAAAGAG
* * * ** *
57516789 AAATTACTGAAATA-CCCTCGA-TTGTGAAATTACTAAAATACCTTCGATTTGTA
1 AAATTACCGAAATACCCCT-AATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * *
57516842 AAATTACCGAAATACCCCTAATTTGTGAAATTACCGAAACACCC-CTGATTTTTA
1 AAATTACCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTC-GATTTGTA
** * ** * *
57516896 AAATTACTAAAATACCCCTAATTTGTGAAATTACTAAAACACCCTCGACTTGTA
1 AAATTACCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * *
57516950 AAATTACCGAAACACCCTTAATTTGTAAAATTATCGAAATACCGTCGATTTGAA
1 AAATTACCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * *
57517004 AAATTATCGAAATA-CCTTCGATTTGTAAAATTACCAAAATACCCTCGATTTTTA
1 AAATTACCGAAATACCCCT-AATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * ** * *
57517058 AAATTACCGAAACA-CCATCGATTTGTAAAATTATTGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCCT-AATTTGTAAAATTACCGAAATACCCTCGAT-TTGTA
57517112 AAATTACCGAAATACC
1 AAATTACCGAAATACC
57517128 ATTGTAGTGT
Statistics
Matches: 236, Mismatches: 43, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
53 20 0.08
54 214 0.91
55 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
AAATTACCGAAATACCCCTAATTTGTAAAATTACCGAAATACCCTCGATTTGTA
Found at i:57517125 original size:81 final size:80
Alignment explanation
Indices: 57516789--57517127 Score: 308
Period size: 81 Copynumber: 4.2 Consensus size: 80
57516779 TAATAAAGAG
* * *
57516789 AAATTACTGAAATACCCTCGA-TTGTGAAATTACTAAAATACCTTCGATTTGTAAAATTACCGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACC-TCGATTTGTAAAATTACCGAA
* * *
57516853 ATACCCCTAATTTGTG
65 ATACCCTTGATTTGTA
* * * * * * **
57516869 AAATTACCGAAACACCC-CTGATTTTTAAAATTACTAAAATACCCCTAATTTGTGAAATTACTAA
1 AAATTACCGAAATACCCTC-GATTTGTAAAATTACCAAAATACCTC-GATTTGTAAAATTACCGA
* * *
57516933 AACACCCTCGACTTGTA
64 AATACCCTTGATTTGTA
* ** * * * *
57516950 AAATTACCGAAACACCCTTAATTTGTAAAATTATCGAAATACCGTCGATTTGAAAAATTATCGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACC-TCGATTTGTAAAATTACCGAA
57517015 ATA-CCTTCGATTTGTA
65 ATACCCTT-GATTTGTA
* * * * **
57517031 AAATTACCAAAATACCCTCGATTTTTAAAATTACCGAAACACCATCGATTTGTAAAATTATTGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACC-TCGATTTGTAAAATTACCGAA
*
57517096 ATACCCTTG-TAGTGTA
65 ATACCCTTGAT-TTGTA
57517112 AAATTACCGAAATACC
1 AAATTACCGAAATACC
57517128 ATTGTAGTGT
Statistics
Matches: 208, Mismatches: 43, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
79 1 0.00
80 22 0.11
81 180 0.87
82 5 0.02
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (80 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCTCGATTTGTAAAATTACCGAAA
TACCCTTGATTTGTA
Found at i:57517132 original size:27 final size:27
Alignment explanation
Indices: 57517056--57517169 Score: 104
Period size: 27 Copynumber: 4.2 Consensus size: 27
57517046 CCTCGATTTT
* * *
57517056 TAAAATTACCGAAACACCATCG-ATTTG
1 TAAAATTACCGAAATACCATTGTA-GTG
** *
57517083 TAAAATTATTGAAATACCCTTGTAGTG
1 TAAAATTACCGAAATACCATTGTAGTG
57517110 TAAAATTACCGAAATACCATTGTAGTG
1 TAAAATTACCGAAATACCATTGTAGTG
* * * ** *
57517137 TAAAATGATCGACATACCCCTGTAGGG
1 TAAAATTACCGAAATACCATTGTAGTG
57517164 TAAAAT
1 TAAAAT
57517170 GACTGTTTTG
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
27 70 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (27 bp):
TAAAATTACCGAAATACCATTGTAGTG
Found at i:57517161 original size:54 final size:54
Alignment explanation
Indices: 57517056--57517169 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 54
57517046 CCTCGATTTT
* * * * *
57517056 TAAAATTACCGAAACACCATCGATTTGTAAAATTATTGAAATACCCTTGTAGTG
1 TAAAATTACCGAAACACCATCGATGTGTAAAATGATCGAAATACCCCTGTAGGG
* * *
57517110 TAAAATTACCGAAATACCATTG-TAGTGTAAAATGATCGACATACCCCTGTAGGG
1 TAAAATTACCGAAACACCATCGAT-GTGTAAAATGATCGAAATACCCCTGTAGGG
57517164 TAAAAT
1 TAAAAT
57517170 GACTGTTTTG
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.02
54 50 0.98
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (54 bp):
TAAAATTACCGAAACACCATCGATGTGTAAAATGATCGAAATACCCCTGTAGGG
Found at i:57517170 original size:27 final size:27
Alignment explanation
Indices: 57517081--57517171 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 27
57517071 ACCATCGATT
* *
57517081 TGTAAAATTATTGAAATACCCTTGTAG
1 TGTAAAATGATCGAAATACCCTTGTAG
* * *
57517108 TGTAAAATTACCGAAATACCATTGTAG
1 TGTAAAATGATCGAAATACCCTTGTAG
* *
57517135 TGTAAAATGATCGACATACCCCTGTAG
1 TGTAAAATGATCGAAATACCCTTGTAG
*
57517162 GGTAAAATGA
1 TGTAAAATGA
57517172 CTGTTTTGCC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (27 bp):
TGTAAAATGATCGAAATACCCTTGTAG
Found at i:57521892 original size:21 final size:21
Alignment explanation
Indices: 57521866--57521910 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
57521856 ATATACTCCT
57521866 TATCTTAAACTTATATATATA
1 TATCTTAAACTTATATATATA
*
57521887 TATCTTAAGCTTATATATATA
1 TATCTTAAACTTATATATATA
57521908 TAT
1 TAT
57521911 ATATATCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (21 bp):
TATCTTAAACTTATATATATA
Found at i:57521903 original size:2 final size:2
Alignment explanation
Indices: 57521898--57521945 Score: 53
Period size: 2 Copynumber: 24.5 Consensus size: 2
57521888 ATCTTAAGCT
* * * *
57521898 TA TA TA TA TA TA TA TA TA TC T- TA AA CA TT TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
57521939 TA TA TA T
1 TA TA TA T
57521946 GTTACTTTGG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:57521907 original size:27 final size:28
Alignment explanation
Indices: 57521877--57521945 Score: 113
Period size: 29 Copynumber: 2.5 Consensus size: 28
57521867 ATCTTAAACT
*
57521877 TATATATATATATCTTAAGC-TTATATA
1 TATATATATATATCTTAAACATTATATA
57521904 TATATATATATATCTTAAACATTTATATA
1 TATATATATATATCTTAAACA-TTATATA
57521933 TATATATATATAT
1 TATATATATATAT
57521946 GTTACTTTGG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 19 0.49
29 20 0.51
ACGTcount: A:0.43, C:0.06, G:0.01, T:0.49
Consensus pattern (28 bp):
TATATATATATATCTTAAACATTATATA
Found at i:57522158 original size:27 final size:26
Alignment explanation
Indices: 57522095--57522212 Score: 130
Period size: 26 Copynumber: 4.5 Consensus size: 26
57522085 TTACTTTGTG
* * * *
57522095 TATTATTTATTTTAATTTATTTTACA
1 TATTATTTATTTCAAATTGTTTTATA
* *
57522121 TATTATATATTTGAAATTGTTTTATA
1 TATTATTTATTTCAAATTGTTTTATA
57522147 TATTATTTTATTTCAAATTGTTTTATA
1 TATTA-TTTATTTCAAATTGTTTTATA
*
57522174 TTTTATTTATTTCAAATAT-TTTTCATA
1 TATTATTTATTTCAAAT-TGTTTT-ATA
*
57522201 TATTGTTTATTT
1 TATTATTTATTT
57522213 TGGATCATTC
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 42 0.53
27 37 0.47
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (26 bp):
TATTATTTATTTCAAATTGTTTTATA
Found at i:57522171 original size:53 final size:53
Alignment explanation
Indices: 57522095--57522212 Score: 132
Period size: 53 Copynumber: 2.2 Consensus size: 53
57522085 TTACTTTGTG
* * *
57522095 TATTATTTATTTTAATTTATTTTACATATTATATATTTGAAAT-TGTTTT-ATA
1 TATTATTTATTTCAAATTATTTTACATATTATATATTTCAAATAT-TTTTCATA
* * * *
57522147 TATTATTTTATTTCAAATTGTTTTATATTTTATTTATTTCAAATATTTTTCATA
1 TATTA-TTTATTTCAAATTATTTTACATATTATATATTTCAAATATTTTTCATA
*
57522201 TATTGTTTATTT
1 TATTATTTATTT
57522213 TGGATCATTC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
52 5 0.09
53 42 0.76
54 8 0.15
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (53 bp):
TATTATTTATTTCAAATTATTTTACATATTATATATTTCAAATATTTTTCATA
Found at i:57524777 original size:19 final size:19
Alignment explanation
Indices: 57524753--57524797 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
57524743 CGTCTCTTTT
*
57524753 TGCATT-CATTTCATGCATC
1 TGCATTGCATTTCAT-CATA
*
57524772 TGCATTGCATTTTATCATA
1 TGCATTGCATTTCATCATA
57524791 TGCATTG
1 TGCATTG
57524798 GATGTCACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.44
Consensus pattern (19 bp):
TGCATTGCATTTCATCATA
Found at i:57528179 original size:19 final size:18
Alignment explanation
Indices: 57528123--57528197 Score: 77
Period size: 18 Copynumber: 4.2 Consensus size: 18
57528113 CCTTAAGACC
57528123 AAAA-CAATCAAAAATAAA
1 AAAATCAAT-AAAAATAAA
*
57528141 AAAAT-ATGATAATAAT-AA
1 AAAATCA--ATAAAAATAAA
57528159 AAAATCAATCAAAAATAAA
1 AAAATCAAT-AAAAATAAA
57528178 AAAATCAA-AAAAATAAA
1 AAAATCAATAAAAATAAA
57528195 AAA
1 AAA
57528198 TAAAAAAGGA
Statistics
Matches: 49, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
17 14 0.29
18 17 0.35
19 16 0.33
20 2 0.04
ACGTcount: A:0.76, C:0.07, G:0.01, T:0.16
Consensus pattern (18 bp):
AAAATCAATAAAAATAAA
Found at i:57528189 original size:17 final size:18
Alignment explanation
Indices: 57528131--57528197 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 18
57528121 CCAAAACAAT
57528131 CAAAAATAAAAAAAT-ATGA
1 CAAAAATAAAAAAATCA--A
* *
57528150 TAATAAT-AAAAAATCAA
1 CAAAAATAAAAAAATCAA
57528167 TCAAAAATAAAAAAATCAA
1 -CAAAAATAAAAAAATCAA
57528186 -AAAAATAAAAAA
1 CAAAAATAAAAAA
57528198 TAAAAAAGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
17 13 0.32
18 12 0.29
19 16 0.39
ACGTcount: A:0.76, C:0.06, G:0.01, T:0.16
Consensus pattern (18 bp):
CAAAAATAAAAAAATCAA
Found at i:57528204 original size:9 final size:8
Alignment explanation
Indices: 57528132--57528204 Score: 60
Period size: 8 Copynumber: 8.5 Consensus size: 8
57528122 CAAAACAATC
57528132 AAAAATAA
1 AAAAATAA
57528140 AAAAATATGA
1 AAAAATA--A
*
57528150 TAATAAT-A
1 -AAAAATAA
57528158 AAAAATCAA
1 AAAAAT-AA
57528167 TCAAAAATAA
1 --AAAAATAA
57528177 AAAAATCAA
1 AAAAAT-AA
57528186 AAAAAT-A
1 AAAAATAA
57528193 AAAAATAA
1 AAAAATAA
57528201 AAAA
1 AAAA
57528205 GGAAGAAAGA
Statistics
Matches: 54, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
7 12 0.22
8 19 0.35
9 9 0.17
10 3 0.06
11 11 0.20
ACGTcount: A:0.78, C:0.04, G:0.01, T:0.16
Consensus pattern (8 bp):
AAAAATAA
Found at i:57528204 original size:15 final size:16
Alignment explanation
Indices: 57528123--57528204 Score: 69
Period size: 17 Copynumber: 4.9 Consensus size: 16
57528113 CCTTAAGACC
57528123 AAAACAATCAAAAATAA-
1 AAAA-AATCAAAAA-AAT
* * *
57528140 AAAAATATGATAATAAT
1 AAAAA-ATCAAAAAAAT
57528157 AAAAAATCAATCAAAAAT
1 AAAAAATCAA--AAAAAT
57528175 AAAAAAATCAAAAAAAT
1 -AAAAAATCAAAAAAAT
57528192 AAAAAAT-AAAAAA
1 AAAAAATCAAAAAA
57528205 GGAAGAAAGA
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
15 6 0.11
16 13 0.24
17 20 0.37
18 5 0.09
19 10 0.19
ACGTcount: A:0.77, C:0.06, G:0.01, T:0.16
Consensus pattern (16 bp):
AAAAAATCAAAAAAAT
Found at i:57529485 original size:44 final size:44
Alignment explanation
Indices: 57529437--57529592 Score: 217
Period size: 44 Copynumber: 3.5 Consensus size: 44
57529427 ACAGATCCTA
57529437 TCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTG
* * * **
57529481 TCTCCCTAAGCAGTAGTGGAGCA-GATCGAAGA-TGGCGAATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGCT-AAAGATTGTAG-ATCTTG
* *
57529525 TGTCCCTAAGCAGTAGTGAAGTAGGCTAAAGATTGTAGATCTTG
1 TCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTG
57529569 TCTCCCTAAGCAGTAGTGGAGTAG
1 TCTCCCTAAGCAGTAGTGGAGTAG
57529593 ATTTAAGCCA
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
43 5 0.05
44 84 0.89
45 5 0.05
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTG
Found at i:57537082 original size:40 final size:40
Alignment explanation
Indices: 57537008--57537193 Score: 202
Period size: 40 Copynumber: 4.7 Consensus size: 40
57536998 TCAAATGATG
* * *
57537008 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTTACTAAC
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
57537048 TTCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
57537088 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** *
57537128 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
57537169 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
57537194 AACGAGTAGT
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57537145 original size:80 final size:82
Alignment explanation
Indices: 57537008--57537193 Score: 240
Period size: 80 Copynumber: 2.3 Consensus size: 82
57536998 TCAAATGATG
* *
57537008 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAACTTCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
*
57537072 TGTGCGAGTTACTA-AA
66 TGTGCGAGCTACTATAA
* * **
57537088 TCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTTACTAAATCCGGACTAAGAT-CCGAAGGCA
57537150 TTTGTGCGAGCTACTATAA
64 TTTGTGCGAGCTACTATAA
*
57537169 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57537194 AACGAGTAGT
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 2 0.02
80 81 0.88
81 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGCTACTATAA
Found at i:57540002 original size:29 final size:29
Alignment explanation
Indices: 57539970--57540047 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
57539960 ATACCCTCCG
** *
57539970 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
57539999 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
57540028 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
57540048 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:57547831 original size:29 final size:29
Alignment explanation
Indices: 57547799--57547876 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
57547789 ATACCCTCCG
** *
57547799 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
57547828 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
57547857 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
57547877 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:57549559 original size:23 final size:23
Alignment explanation
Indices: 57549532--57549635 Score: 84
Period size: 23 Copynumber: 4.3 Consensus size: 23
57549522 GTTTATTGTT
*
57549532 TTCAGCTCATTGGAGCTTACCAA
1 TTCAGCTCATTAGAGCTTACCAA
57549555 TTCAGCTCGA-TAGAGCTTACCTATA
1 TTCAGCTC-ATTAGAGCTTACC-A-A
* * ****
57549580 TATCAGCTCGTAAGAGCTTATTGTT
1 T-TCAGCTCATTAGAGCTTA-CCAA
*
57549605 TTCAGCTCATTAGAGCTTACCGA
1 TTCAGCTCATTAGAGCTTACCAA
57549628 TTCAGCTC
1 TTCAGCTC
57549636 GTATGAGCTT
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
23 26 0.42
24 18 0.29
25 3 0.05
26 15 0.24
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (23 bp):
TTCAGCTCATTAGAGCTTACCAA
Found at i:57549613 original size:73 final size:74
Alignment explanation
Indices: 57549487--57549647 Score: 247
Period size: 73 Copynumber: 2.2 Consensus size: 74
57549477 CTCACCACAA
* * * *
57549487 CTCGTATGAGCTTA-CTGATATATTAGCTCGTGAGAGTTTATTGTTTTCAGCTCATTGGAGCTTA
1 CTCGTATGAGCTTACCTGATATATCAGCTCGTAAGAGCTTATTGTTTTCAGCTCATTAGAGCTTA
57549551 CCAATTCAG
66 CCAATTCAG
57549560 CTCG-ATAGAGCTTACCT-ATATATCAGCTCGTAAGAGCTTATTGTTTTCAGCTCATTAGAGCTT
1 CTCGTAT-GAGCTTACCTGATATATCAGCTCGTAAGAGCTTATTGTTTTCAGCTCATTAGAGCTT
*
57549623 ACCGATTCAG
65 ACCAATTCAG
57549633 CTCGTATGAGCTTAC
1 CTCGTATGAGCTTAC
57549648 TGTTCAACTC
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
72 2 0.03
73 74 0.93
74 4 0.05
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (74 bp):
CTCGTATGAGCTTACCTGATATATCAGCTCGTAAGAGCTTATTGTTTTCAGCTCATTAGAGCTTA
CCAATTCAG
Found at i:57549619 original size:24 final size:24
Alignment explanation
Indices: 57549519--57549623 Score: 70
Period size: 24 Copynumber: 4.3 Consensus size: 24
57549509 TTAGCTCGTG
*
57549519 AGAGTTTATTGTTTTCAGCTCATT
1 AGAGCTTATTGTTTTCAGCTCATT
* ****
57549543 GGAGCTTA-CCAATTCAGCTCGA-T
1 AGAGCTTATTGTTTTCAGCTC-ATT
* * * * *
57549566 AGAGCTTACCTATATATCAGCTCGTA
1 AGAGCTTA-TTGT-TTTCAGCTCATT
57549592 AGAGCTTATTGTTTTCAGCTCATT
1 AGAGCTTATTGTTTTCAGCTCATT
57549616 AGAGCTTA
1 AGAGCTTA
57549624 CCGATTCAGC
Statistics
Matches: 57, Mismatches: 19, Indels: 10
0.66 0.22 0.12
Matches are distributed among these distances:
23 16 0.28
24 24 0.42
25 2 0.04
26 15 0.26
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (24 bp):
AGAGCTTATTGTTTTCAGCTCATT
Found at i:57549620 original size:50 final size:47
Alignment explanation
Indices: 57549555--57549673 Score: 136
Period size: 45 Copynumber: 2.5 Consensus size: 47
57549545 AGCTTACCAA
* *
57549555 TTCAGCTCGATAGAGCTTACCTATATATCAGCTCGTAAGAGCTTATTGTT
1 TTCAGCTCGATAGAGCTTACC--GAT-TCAGCTCGTAAGAGCTTACTGTT
*
57549605 TTCAGCTC-ATTAGAGCTTACCGATTCAGCTCGTATGAGCTTACTG--
1 TTCAGCTCGA-TAGAGCTTACCGATTCAGCTCGTAAGAGCTTACTGTT
* *
57549650 TTCAACTCGATAGAGCTTATCGAT
1 TTCAGCTCGATAGAGCTTACCGAT
57549674 CATGACTTGA
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
45 20 0.32
46 1 0.02
47 19 0.31
48 2 0.03
49 1 0.02
50 19 0.31
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (47 bp):
TTCAGCTCGATAGAGCTTACCGATTCAGCTCGTAAGAGCTTACTGTT
Found at i:57549643 original size:23 final size:24
Alignment explanation
Indices: 57549544--57549673 Score: 101
Period size: 23 Copynumber: 5.5 Consensus size: 24
57549534 CAGCTCATTG
*
57549544 GAGCTTACCAATTCAGCTCG-ATA
1 GAGCTTACCGATTCAGCTCGTATA
*
57549567 GAGCTTACCTATATATCAGCTCGTA-A
1 GAGCTTACC--GAT-TCAGCTCGTATA
** * *
57549593 GAGCTTATTGTTTTCAGCTCAT-TA
1 GAGCTTACCG-ATTCAGCTCGTATA
57549617 GAGCTTACCGATTCAGCTCGTAT-
1 GAGCTTACCGATTCAGCTCGTATA
* *
57549640 GAGCTTACTG-TTCAACTCG-ATA
1 GAGCTTACCGATTCAGCTCGTATA
*
57549662 GAGCTTATCGAT
1 GAGCTTACCGAT
57549674 CATGACTTGA
Statistics
Matches: 84, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
21 2 0.02
22 16 0.19
23 28 0.33
24 18 0.21
25 3 0.04
26 16 0.19
27 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (24 bp):
GAGCTTACCGATTCAGCTCGTATA
Found at i:57557830 original size:46 final size:46
Alignment explanation
Indices: 57557777--57557952 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
57557767 TATTTGGGCA
57557777 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
57557823 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
57557870 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
57557916 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57557953 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:57557932 original size:93 final size:93
Alignment explanation
Indices: 57557773--57557944 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57557763 GGGATATTTG
* *
57557773 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57557838 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
57557866 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57557931 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
57557945 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:57561483 original size:80 final size:82
Alignment explanation
Indices: 57561346--57561531 Score: 249
Period size: 80 Copynumber: 2.3 Consensus size: 82
57561336 TCGAATGATG
*
57561346 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAATCTGGACTAAGATCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTTACTAAATCCGGACTAAGATCCAAAGGCATT
*
57561410 TGTGCGAGTTACTA-AA
66 TGTGCGAGCTACTATAA
* * **
57561426 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCAAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTTACTAAATCCGGACTAAGAT-CCAAAGGCA
57561488 TTTGTGCGAGCTACTATAA
64 TTTGTGCGAGCTACTATAA
*
57561507 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57561532 AACGAGTAGT
Statistics
Matches: 93, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 2 0.02
80 81 0.87
81 10 0.11
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTTACTAAATCCGGACTAAGATCCAAAGGCATT
TGTGCGAGCTACTATAA
Found at i:57561511 original size:40 final size:40
Alignment explanation
Indices: 57561346--57561531 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
57561336 TCGAATGATG
* *
57561346 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACTAAA
1 TCCGGGCTAAGTCCCAAAGGCATTTGTGC-GAGTTACTAAA
* *
57561386 TCTGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCAAAGGCATTTGTGCGAGTTACTAAA
* *
57561426 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCAAAGGCATTTGTGCGAGTTACTAAA
* *
57561466 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTA-AA
* *
57561507 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCAAAGGCATTTG
57561532 AACGAGTAGT
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.91
41 10 0.08
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
Done.