Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 191 of 335
Found at i:57563045 original size:23 final size:23
Alignment explanation
Indices: 57563028--57563152 Score: 78
Period size: 23 Copynumber: 5.3 Consensus size: 23
57563018 CAGCTCATTG
57563028 GAGCTTACCAATTCAGCTCGATA
1 GAGCTTACCAATTCAGCTCGATA
57563051 GAGCTTACCTATATATCAGCTCG-TAA
1 GAGCTTACC-A-AT-TCAGCTCGAT-A
**** *
57563077 GAGCTTATTGTTTTCAGCT-TATTA
1 GAGCTTA-CCAATTCAGCTCGA-TA
*
57563101 GAGCTTACCGATTCAGCTCG-TA
1 GAGCTTACCAATTCAGCTCGATA
** *
57563123 TGAGCTTA-CTGTTCAACTCGATA
1 -GAGCTTACCAATTCAGCTCGATA
57563146 GAGCTTA
1 GAGCTTA
57563153 TCGATCATGA
Statistics
Matches: 79, Mismatches: 13, Indels: 21
0.70 0.12 0.19
Matches are distributed among these distances:
22 18 0.23
23 25 0.32
24 15 0.19
25 5 0.06
26 16 0.20
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (23 bp):
GAGCTTACCAATTCAGCTCGATA
Found at i:57563105 original size:73 final size:74
Alignment explanation
Indices: 57562971--57563131 Score: 247
Period size: 73 Copynumber: 2.2 Consensus size: 74
57562961 CTCACCACAA
* * *
57562971 CTCGTATGAGCTTA-CTGATATATCAGCTCGTGAGAGTTTATTGTTTTCAGCTCATTGGAGCTTA
1 CTCGTATGAGCTTACCTGATATATCAGCTCGTAAGAGCTTATTGTTTTCAGCTCATTAGAGCTTA
57563035 CCAATTCAG
66 CCAATTCAG
*
57563044 CTCG-ATAGAGCTTACCT-ATATATCAGCTCGTAAGAGCTTATTGTTTTCAGCTTATTAGAGCTT
1 CTCGTAT-GAGCTTACCTGATATATCAGCTCGTAAGAGCTTATTGTTTTCAGCTCATTAGAGCTT
*
57563107 ACCGATTCAG
65 ACCAATTCAG
57563117 CTCGTATGAGCTTAC
1 CTCGTATGAGCTTAC
57563132 TGTTCAACTC
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
72 2 0.03
73 74 0.93
74 4 0.05
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (74 bp):
CTCGTATGAGCTTACCTGATATATCAGCTCGTAAGAGCTTATTGTTTTCAGCTCATTAGAGCTTA
CCAATTCAG
Found at i:57563142 original size:22 final size:23
Alignment explanation
Indices: 57563099--57563157 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
57563089 TTCAGCTTAT
*
57563099 TAGAGCTTACCGATTCAGCTCG-
1 TAGAGCTTACCGATTCAACTCGA
*
57563121 TATGAGCTTACTG-TTCAACTCGA
1 TA-GAGCTTACCGATTCAACTCGA
*
57563144 TAGAGCTTATCGAT
1 TAGAGCTTACCGAT
57563158 CATGACTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
22 18 0.60
23 12 0.40
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32
Consensus pattern (23 bp):
TAGAGCTTACCGATTCAACTCGA
Found at i:57569383 original size:24 final size:25
Alignment explanation
Indices: 57569356--57569431 Score: 109
Period size: 25 Copynumber: 3.1 Consensus size: 25
57569346 GCCTAGCCTC
57569356 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
57569380 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
* * *
57569405 TTTCAGTAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
57569430 TT
1 TT
57569432 CGCACTTCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
24 6 0.13
25 40 0.87
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:57569505 original size:20 final size:21
Alignment explanation
Indices: 57569480--57569527 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
57569470 AAATGAATAC
*
57569480 ATCATGTGCATATCATA-CAT
1 ATCATGTGCATATCATATCAA
57569500 ATCATGTGCATATCATATCAA
1 ATCATGTGCATATCATATCAA
57569521 ATCATGT
1 ATCATGT
57569528 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAA
Found at i:57576115 original size:24 final size:25
Alignment explanation
Indices: 57576088--57576139 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
57576078 GCCTAGCCTC
57576088 TTTTAATAA-CTGGGGCAAAGCCCT
1 TTTTAATAATCTGGGGCAAAGCCCT
*
57576112 TTTTGATAATCTGGGGCAAAGCCCT
1 TTTTAATAATCTGGGGCAAAGCCCT
57576137 TTT
1 TTT
57576140 GCACTTCCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (25 bp):
TTTTAATAATCTGGGGCAAAGCCCT
Found at i:57576140 original size:24 final size:23
Alignment explanation
Indices: 57576068--57576140 Score: 83
Period size: 25 Copynumber: 3.0 Consensus size: 23
57576058 GCTTTATCAT
** *
57576068 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCC-CTTTTG
57576093 ATAACTGGGGCAAAGCCCTTTTTG
1 ATAACTGGGGCAAAGCCC-TTTTG
57576117 ATAATCTGGGGCAAAGCCCTTTTG
1 ATAA-CTGGGGCAAAGCCCTTTTG
57576141 CACTTCCTCC
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 1 0.02
24 20 0.47
25 22 0.51
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCCTTTTG
Found at i:57576212 original size:20 final size:21
Alignment explanation
Indices: 57576187--57576234 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
57576177 AAATGAATAC
*
57576187 ATCATGTGCATATCATA-CAT
1 ATCATGTGCATATCATATCAA
57576207 ATCATGTGCATATCATATCAA
1 ATCATGTGCATATCATATCAA
57576228 ATCATGT
1 ATCATGT
57576235 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAA
Found at i:57580813 original size:11 final size:11
Alignment explanation
Indices: 57580797--57580830 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
57580787 CTCCAACATC
57580797 CCATTCAAACT
1 CCATTCAAACT
57580808 CCATTCAAACT
1 CCATTCAAACT
*
57580819 CTATTCAAACT
1 CCATTCAAACT
57580830 C
1 C
57580831 TCATGACCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.29
Consensus pattern (11 bp):
CCATTCAAACT
Found at i:57583628 original size:55 final size:53
Alignment explanation
Indices: 57583541--57583797 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 53
57583531 ATTAGGGTTT
* *
57583541 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGATTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAA-TGGTAAG-TTTCTAAGGC
* * * * * * *
57583596 AAGGAAATCATGTAAGACTATGTCAAGACATGGCAATGATAAGTTACTATAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT--TCTAAGGC
* * * *
57583651 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTC-TAAGGC
* *
57583704 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCTAAGGC
* * *
57583753 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
57583798 ACCCGTGTAT
Statistics
Matches: 167, Mismatches: 29, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
49 41 0.25
52 7 0.04
53 40 0.24
54 10 0.06
55 65 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCTAAGGC
Found at i:57583747 original size:108 final size:109
Alignment explanation
Indices: 57583551--57583748 Score: 310
Period size: 108 Copynumber: 1.8 Consensus size: 109
57583541 AAGGATACCG
* * *
57583551 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGATTTCTAAGGCAAGGAAATCATGTAAGACTA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGT-AGAGTTCTAAGGCAAGGAAACCATGTAAGACCA
57583616 TGTCAAGACATGGCAATGATAAGTTACTATAAAGCAAAGGTCCCA
65 TGTCAAGACATGGCAATGATAAGTTACTATAAAGCAAAGGTCCCA
**
57583661 TGTAAGACCATGCCAAGGCATGGC-ATTGGT-GAGTTCATAAGGCAAGGCTACCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAGAGTTC-TAAGGCAAGGAAACCATGTAAGACCA
*
57583724 TGTCAAGACATGGCAATGGTAAGTT
65 TGTCAAGACATGGCAATGATAAGTT
57583749 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 5 0.06
108 46 0.57
109 6 0.07
110 24 0.30
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (109 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAGAGTTCTAAGGCAAGGAAACCATGTAAGACCAT
GTCAAGACATGGCAATGATAAGTTACTATAAAGCAAAGGTCCCA
Found at i:57583785 original size:49 final size:49
Alignment explanation
Indices: 57583704--57583797 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
57583694 TTCATAAGGC
* * *
57583704 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCAA
1 AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAGTTTCAA
*
57583753 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGTT
1 AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAGTT
57583798 ACCCGTGTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.21
Consensus pattern (49 bp):
AAGGATACCACGTAAGACCATGACAAGACATGGCAATGGTAAGTTTCAA
Found at i:57584008 original size:16 final size:16
Alignment explanation
Indices: 57583987--57584017 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57583977 ATAATTTTGA
57583987 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
57584003 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
57584018 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:57593136 original size:8 final size:8
Alignment explanation
Indices: 57593086--57593142 Score: 50
Period size: 8 Copynumber: 7.4 Consensus size: 8
57593076 CTCAAAATTT
57593086 TAATTAAA
1 TAATTAAA
57593094 TAA--AAA
1 TAATTAAA
*
57593100 TTATT-AA
1 TAATTAAA
*
57593107 TGATTAAA
1 TAATTAAA
57593115 TAAATTGAAA
1 T-AATT-AAA
57593125 -AATTAAA
1 TAATTAAA
57593132 TAATTAAA
1 TAATTAAA
57593140 TAA
1 TAA
57593143 AATTAAAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
6 5 0.12
7 9 0.22
8 20 0.50
9 3 0.08
10 3 0.08
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (8 bp):
TAATTAAA
Found at i:57593150 original size:25 final size:25
Alignment explanation
Indices: 57593085--57593150 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
57593075 TCTCAAAATT
* *
57593085 TTAATTAAA-TAAAAATTATTAATGA
1 TTAAATAAATTAAAAATTA-TAATAA
57593110 TTAAATAAATTGAAAAATTA-AATAA
1 TTAAATAAATT-AAAAATTATAATAA
57593135 TTAAATAAAATTAAAA
1 TTAAAT-AAATTAAAA
57593151 TTTAGTAGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
25 22 0.61
26 6 0.17
27 8 0.22
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (25 bp):
TTAAATAAATTAAAAATTATAATAA
Found at i:57593689 original size:17 final size:18
Alignment explanation
Indices: 57593662--57593695 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
57593652 AATTAAATAT
57593662 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
57593680 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
57593696 TATACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:57593905 original size:16 final size:15
Alignment explanation
Indices: 57593884--57593917 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
57593874 AAAGTTGATA
57593884 ATAATAAATATATATT
1 ATAATAAATATA-ATT
*
57593900 ATAATAGATATAATT
1 ATAATAAATATAATT
57593915 ATA
1 ATA
57593918 TATTAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:57596373 original size:46 final size:46
Alignment explanation
Indices: 57596221--57596439 Score: 237
Period size: 46 Copynumber: 4.7 Consensus size: 46
57596211 TCACTTGTGT
* * * ** *
57596221 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACGA
* * ** *
57596267 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACATTGAGTCGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CCTCAAGACGA
* * *
57596315 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCAAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACG-A
*
57596362 -AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACG-A
57596408 -AGCCAGTGTAAGACATGTCTGGGACATGCATC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC
57596440 GGCTAAATGT
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
46 98 0.66
47 30 0.20
48 20 0.14
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACGA
Found at i:57598840 original size:28 final size:27
Alignment explanation
Indices: 57598791--57598902 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
57598781 AGCATGGCTG
* *
57598791 CCAGAACAGATAA-CGTGACAGAGTCA
1 CCAGAACAGATAATCGTGGCAGAGCCA
57598817 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATCGTGGCAGAGCCA
* *
57598845 CCAGAACAGA-AATATGTGGTAGAGCCA
1 CCAGAACAGATAAT-CGTGGCAGAGCCA
* * *
57598872 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATCGTGGCAGAGCCA
57598899 CCAG
1 CCAG
57598903 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.64
28 19 0.25
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATCGTGGCAGAGCCA
Found at i:57598854 original size:54 final size:54
Alignment explanation
Indices: 57598791--57598902 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
57598781 AGCATGGCTG
* *
57598791 CCAGAACAGATA-ACGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAATACGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* ** * *
57598845 CCAGAACAGAAATATGTGGTAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAATACGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
57598899 CCAG
1 CCAG
57598903 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 34 0.68
55 16 0.32
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAATACGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:57601807 original size:40 final size:40
Alignment explanation
Indices: 57601733--57601914 Score: 305
Period size: 40 Copynumber: 4.6 Consensus size: 40
57601723 AACCCAAGTA
* *
57601733 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
57601772 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
57601812 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
57601852 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
57601892 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
57601915 CATTCGAATA
Statistics
Matches: 135, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 12 0.09
40 122 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:57609804 original size:40 final size:40
Alignment explanation
Indices: 57609726--57609867 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
57609716 AACCCAAGTA
* * * *
57609726 CCTTCGGGATTTAG-CTGGATATAG-CAACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
57609765 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
57609805 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
57609845 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
57609868 CATTCGAATA
Statistics
Matches: 95, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 12 0.13
40 82 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:57615396 original size:29 final size:28
Alignment explanation
Indices: 57615326--57615400 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
57615316 ATACTCGATT
* *
57615326 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
57615354 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
57615383 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
57615401 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:57615417 original size:29 final size:29
Alignment explanation
Indices: 57615384--57615457 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
57615374 CCTTCGAGCT
57615384 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
57615413 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
57615442 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
57615458 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:57623233 original size:29 final size:29
Alignment explanation
Indices: 57623199--57623273 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
57623189 TACTCGATTT
*
57623199 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
57623228 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
57623257 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
57623274 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:57623290 original size:29 final size:29
Alignment explanation
Indices: 57623257--57623330 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
57623247 CCTTCGAGCT
57623257 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
57623286 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
57623315 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
57623331 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:57628845 original size:27 final size:26
Alignment explanation
Indices: 57628809--57628921 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
57628799 TAGCATGGCT
* *
57628809 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
57628835 ACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
*
57628863 ACCAGAACAGAAATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
57628890 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
57628917 ACCAG
1 ACCAG
57628922 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 53 0.69
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:57628873 original size:54 final size:54
Alignment explanation
Indices: 57628809--57628921 Score: 165
Period size: 54 Copynumber: 2.1 Consensus size: 54
57628799 TAGCATGGCT
* *
57628809 ACCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGAACAGAAATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCC
* * *
57628863 ACCAGAACAGAAATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
57628917 ACCAG
1 ACCAG
57628922 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
ACCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
Found at i:57634297 original size:40 final size:40
Alignment explanation
Indices: 57634252--57634419 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
57634242 CGGAATATAA
57634252 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
57634292 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
57634332 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
57634372 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
57634412 CCGGATAT
1 CCGGATAT
57634420 CATTCTATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:57644081 original size:17 final size:17
Alignment explanation
Indices: 57644059--57644094 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
57644049 TTCTCTAATG
57644059 TCTTGAGGTTTAAACAA
1 TCTTGAGGTTTAAACAA
57644076 TCTTGAGGTTTAAACAA
1 TCTTGAGGTTTAAACAA
57644093 TC
1 TC
57644095 AATGCATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (17 bp):
TCTTGAGGTTTAAACAA
Found at i:57646769 original size:13 final size:13
Alignment explanation
Indices: 57646753--57646778 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
57646743 CTTCCACACG
57646753 GGCGTTTTATCGT
1 GGCGTTTTATCGT
57646766 GGCGTTTTATCGT
1 GGCGTTTTATCGT
57646779 AGCCCGTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (13 bp):
GGCGTTTTATCGT
Found at i:57652872 original size:28 final size:27
Alignment explanation
Indices: 57652833--57652902 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
57652823 AAATTTGTAC
57652833 AGCACTAAGTGTGTGAGTTTGATCATAT
1 AGCACTAAGTGTGTGAG-TTGATCATAT
* *
57652861 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGTGAGTTGATCATAT
57652888 AGCACTAAGTGTGTG
1 AGCACTAAGTGTGTG
57652903 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGTGAGTTGATCATAT
Found at i:57652913 original size:27 final size:27
Alignment explanation
Indices: 57652857--57652914 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
57652847 GAGTTTGATC
* * *
57652857 ATATAGCACTAAGTGTGCGAGTTGATT
1 ATATAGCACTAAGTGTGCGAGCTCACT
*
57652884 ATATAGCACTAAGTGTGTG-GACTCACT
1 ATATAGCACTAAGTGTGCGAG-CTCACT
57652911 ATAT
1 ATAT
57652915 GCTTTTGAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGCGAGCTCACT
Found at i:57659886 original size:27 final size:28
Alignment explanation
Indices: 57659830--57659899 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
57659820 AAATTTGTAC
57659830 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
57659858 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
57659885 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
57659900 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:57659910 original size:27 final size:27
Alignment explanation
Indices: 57659830--57659911 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
57659820 AAATTTGTAC
* *
57659830 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
57659858 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
57659885 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
57659912 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:57663749 original size:27 final size:28
Alignment explanation
Indices: 57663693--57663762 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
57663683 AAATTTGTAC
57663693 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
57663721 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
57663748 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
57663763 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:57663773 original size:27 final size:27
Alignment explanation
Indices: 57663693--57663774 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
57663683 AAATTTGTAC
* *
57663693 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
57663721 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
57663748 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
57663775 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:57667623 original size:27 final size:28
Alignment explanation
Indices: 57667567--57667636 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
57667557 AAATTTGTAC
57667567 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
57667595 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
57667622 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
57667637 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:57667647 original size:27 final size:27
Alignment explanation
Indices: 57667567--57667648 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
57667557 AAATTTGTAC
* *
57667567 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
57667595 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
57667622 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
57667649 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:57669759 original size:22 final size:23
Alignment explanation
Indices: 57669734--57669779 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
57669724 CAACCAAATC
57669734 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
57669756 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
57669779 A
1 A
57669780 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:57669785 original size:23 final size:23
Alignment explanation
Indices: 57669741--57669785 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
57669731 ATCAATTCAA
*
57669741 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
57669764 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
57669786 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:57671400 original size:25 final size:25
Alignment explanation
Indices: 57671371--57671418 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
57671361 TTATAATATG
*
57671371 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATGCCCCTAGGTA
57671396 AAAATGACCATTATGCCCCTAGG
1 AAAATGACCATTATGCCCCTAGG
57671419 GTTTAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATGCCCCTAGGTA
Found at i:57671485 original size:20 final size:20
Alignment explanation
Indices: 57671462--57671519 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
57671452 TAAACATGGT
57671462 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
57671482 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
57671502 ATGTATGATATGCACATG
1 ATGTATGATATGCACATG
57671520 GTGTATTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:57671502 original size:11 final size:11
Alignment explanation
Indices: 57671466--57671519 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
57671456 CATGGTATGT
57671466 ATGATATGCAC
1 ATGATATGCAC
* *
57671477 ATGACATG--T
1 ATGATATGCAC
57671486 ATGATATGCAC
1 ATGATATGCAC
*
57671497 ATGATATG--T
1 ATGATATGCAC
57671506 ATGATATGCAC
1 ATGATATGCAC
57671517 ATG
1 ATG
57671520 GTGTATTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:57671638 original size:46 final size:47
Alignment explanation
Indices: 57671570--57671665 Score: 158
Period size: 47 Copynumber: 2.1 Consensus size: 47
57671560 AGGAAGTGCA
57671570 AAAGGGCTTATGCCCCAATTATT-AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAATTATTAAAAGGGCTTATGCCCCAGTTATT
* * *
57671616 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAATTATTAAAAGGGCTTATGCCCCAGTTATT
57671663 AAA
1 AAA
57671666 AGAGGCTAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
46 22 0.48
47 24 0.52
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAATTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:57671648 original size:24 final size:24
Alignment explanation
Indices: 57671569--57671672 Score: 158
Period size: 23 Copynumber: 4.4 Consensus size: 24
57671559 GAGGAAGTGC
*
57671569 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
57671593 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
57671616 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
57671639 AAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
57671663 AAAAGAGGCT
1 AAAAG-GGCT
57671673 AGGCCTCCAT
Statistics
Matches: 75, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
23 45 0.60
24 26 0.35
25 4 0.05
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:57671914 original size:31 final size:31
Alignment explanation
Indices: 57671879--57671942 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
57671869 CGTTTACAAT
57671879 AAAGGCTTCGACCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
* *
57671910 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
57671941 AA
1 AA
57671943 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:57674943 original size:48 final size:48
Alignment explanation
Indices: 57674902--57675047 Score: 188
Period size: 48 Copynumber: 3.0 Consensus size: 48
57674892 TTACACGATG
* *
57674902 TCTCATATCGATGCCAATGCCATATCCTAGATATGGTCTTACATGGGA
1 TCTCATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
* * * * * *
57674950 TCACATGTCGATGCTAATGCCATGTCCCAAACATGATCTTACATGGGA
1 TCTCATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
57674998 TCTCATAAT-GATGCCAATGCCATGT-CTCAGACATGGTCTTACATGGGA
1 TCTCAT-ATCGATGCCAATGCCATGTCCT-AGACATGGTCTTACATGGGA
57675046 TC
1 TC
57675048 ACACATAACC
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
47 1 0.01
48 80 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (48 bp):
TCTCATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
Found at i:57680325 original size:24 final size:25
Alignment explanation
Indices: 57680265--57680330 Score: 80
Period size: 24 Copynumber: 2.6 Consensus size: 25
57680255 CTCACCGCAA
*
57680265 CTCGTATGAGCTTACCAATATATCAG
1 CTCGTATGAGCTTA-CTATATATCAG
* * *
57680291 CTCATAAGAGCTTACTAT-TCTCAG
1 CTCGTATGAGCTTACTATATATCAG
57680315 CTCGTATGAGCTTACT
1 CTCGTATGAGCTTACT
57680331 GATTTTGTAG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 19 0.56
25 3 0.09
26 12 0.35
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.33
Consensus pattern (25 bp):
CTCGTATGAGCTTACTATATATCAG
Found at i:57681398 original size:27 final size:27
Alignment explanation
Indices: 57681351--57681485 Score: 139
Period size: 27 Copynumber: 5.0 Consensus size: 27
57681341 CATCACATAG
* **
57681351 GGGCAAAACAGTCATCCTACCATATAA
1 GGGCAAAATAGTCATTTTACCATATAA
*
57681378 GGGAAAAATAGTCATTTTACC-TCATAA
1 GGGCAAAATAGTCATTTTACCAT-ATAA
*
57681405 GGGCAAAATCA-CCATTTTACCATATAA
1 GGGCAAAAT-AGTCATTTTACCATATAA
* * * * *
57681432 GAGCAAAATCGTCAATTTAACACATAA
1 GGGCAAAATAGTCATTTTACCATATAA
*
57681459 GGGCAAAACAGTCATTTTACCATATAA
1 GGGCAAAATAGTCATTTTACCATATAA
57681486 ATTAACAACC
Statistics
Matches: 86, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
26 1 0.01
27 83 0.97
28 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.24
Consensus pattern (27 bp):
GGGCAAAATAGTCATTTTACCATATAA
Found at i:57681440 original size:54 final size:53
Alignment explanation
Indices: 57681346--57681561 Score: 179
Period size: 54 Copynumber: 4.0 Consensus size: 53
57681336 ACATACATCA
* ** * *
57681346 CATAGGGGCAAAACAGTCATCCTACCATATAAGGGAAAAATAGTCATTTTACCT
1 CATAAGGGCAAAACA-TCATTTTACCATATAAGAGCAAAATAGTCATTTTACCT
* * * * *
57681400 CATAAGGGCAAAATCACCATTTTACCATATAAGAGCAAAATCGTCAATTTAACA
1 CATAAGGGCAAAA-CATCATTTTACCATATAAGAGCAAAATAGTCATTTTACCT
** * * * *
57681454 CATAAGGGCAAAACAGTCATTTTACCATATAA-ATTAACAACCA-TTATTTTATCG
1 CATAAGGGCAAAACA-TCATTTTACCATATAAGAGCAA-AA-TAGTCATTTTACCT
*
57681508 CATAAGGGCAAAACCATCATTTTAACACACA-AAG-GCAAAATAGTCATTTTACCT
1 CATAAGGGCAAAA-CATCATTTT-AC-CATATAAGAGCAAAATAGTCATTTTACCT
57681562 TACGGGGGTG
Statistics
Matches: 127, Mismatches: 26, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
53 6 0.05
54 108 0.85
55 10 0.08
56 3 0.02
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (53 bp):
CATAAGGGCAAAACATCATTTTACCATATAAGAGCAAAATAGTCATTTTACCT
Found at i:57681579 original size:27 final size:27
Alignment explanation
Indices: 57681549--57681694 Score: 114
Period size: 27 Copynumber: 5.4 Consensus size: 27
57681539 AAGGCAAAAT
*
57681549 AGTCATTTTACCTTACGGGGGTGTTAC
1 AGTCATTTTACCTTACGGGGGTATTAC
** *
57681576 AGTCGCTTTACCTTACAGGGGTATTAC
1 AGTCATTTTACCTTACGGGGGTATTAC
* * * *
57681603 AGTCATTATACCCTATGGGGGTATTTC
1 AGTCATTTTACCTTACGGGGGTATTAC
* * * **
57681630 GGTCATTTTACCCTA-TGGGGTATTTT
1 AGTCATTTTACCTTACGGGGGTATTAC
* * * * **
57681656 GGTCATTTTACCCTATGGGAGTATTTT
1 AGTCATTTTACCTTACGGGGGTATTAC
57681683 AGTCATTTTACC
1 AGTCATTTTACC
57681695 CTATGAGGGT
Statistics
Matches: 100, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 24 0.24
27 76 0.76
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (27 bp):
AGTCATTTTACCTTACGGGGGTATTAC
Found at i:57681659 original size:26 final size:26
Alignment explanation
Indices: 57681604--57681715 Score: 161
Period size: 27 Copynumber: 4.2 Consensus size: 26
57681594 GGGTATTACA
* *
57681604 GTCATTATACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTTG
57681631 GTCATTTTACCCTATGGGGTATTTTG
1 GTCATTTTACCCTATGGGGTATTTTG
*
57681657 GTCATTTTACCCTATGGGAGTATTTTA
1 GTCATTTTACCCTATGGG-GTATTTTG
*
57681684 GTCATTTTACCCTATGAGGGTATGTTG
1 GTCATTTTACCCTATG-GGGTATTTTG
57681711 GTCAT
1 GTCAT
57681716 CATTTCGGCC
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
26 28 0.36
27 48 0.62
28 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGTATTTTG
Found at i:57681668 original size:53 final size:54
Alignment explanation
Indices: 57681604--57681715 Score: 172
Period size: 53 Copynumber: 2.1 Consensus size: 54
57681594 GGGTATTACA
* * *
57681604 GTCATTATACCCTATGGGGGTATTTCGGTCATTTTACCCTATG-GGGTATTTTG
1 GTCATTATACCCTATGGGAGTATTTCAGTCATTTTACCCTATGAGGGTATGTTG
* *
57681657 GTCATTTTACCCTATGGGAGTATTTTAGTCATTTTACCCTATGAGGGTATGTTG
1 GTCATTATACCCTATGGGAGTATTTCAGTCATTTTACCCTATGAGGGTATGTTG
57681711 GTCAT
1 GTCAT
57681716 CATTTCGGCC
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 39 0.74
54 14 0.26
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (54 bp):
GTCATTATACCCTATGGGAGTATTTCAGTCATTTTACCCTATGAGGGTATGTTG
Found at i:57684475 original size:12 final size:12
Alignment explanation
Indices: 57684455--57684485 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
57684445 ATAGTTTTGG
57684455 CACGGCCTAGCA
1 CACGGCCTAGCA
*
57684467 CATGGCCTAGCA
1 CACGGCCTAGCA
57684479 CACGGCC
1 CACGGCC
57684486 GTGTGTGGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.42, G:0.26, T:0.10
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:57685970 original size:27 final size:27
Alignment explanation
Indices: 57685918--57685997 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 27
57685908 GTGACAGAGT
*
57685918 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
*
57685947 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
57685974 CACCAGAACAGATAATTTGTGGCA
1 CACCAGAACAGAT-ATTTGTGGCA
57685998 TAGCCATCAG
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
27 24 0.51
28 16 0.34
29 7 0.15
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:57686161 original size:28 final size:27
Alignment explanation
Indices: 57686112--57686175 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 27
57686102 AAATTAACAC
57686112 TAGGGGTATAAGGTAATTTTGCATACA
1 TAGGGGTATAAGGTAATTTTGCATACA
57686139 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAA-GGTAATTTTGCATACA
57686167 TAGGGGTAT
1 TAGGGGTAT
57686176 TCTAGTACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 11 0.31
28 25 0.69
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.34
Consensus pattern (27 bp):
TAGGGGTATAAGGTAATTTTGCATACA
Found at i:57693567 original size:55 final size:56
Alignment explanation
Indices: 57693502--57693616 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
57693492 AGCATGGCTG
* *
57693502 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
57693558 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
57693613 CCAG
1 CCAG
57693617 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:57693579 original size:27 final size:27
Alignment explanation
Indices: 57693527--57693616 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
57693517 GTGACAGAGT
57693527 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
57693556 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
57693583 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
57693611 CACCAG
1 CACCAG
57693617 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:57693784 original size:27 final size:27
Alignment explanation
Indices: 57693722--57693781 Score: 111
Period size: 28 Copynumber: 2.2 Consensus size: 27
57693712 AAATTAACCC
57693722 TAGGGGTATAAGGTAATTTTGCATACA
1 TAGGGGTATAAGGTAATTTTGCATACA
57693749 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAA-GGTAATTTTGCATACA
57693777 TAGGG
1 TAGGG
57693782 TATTCTAGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 11 0.34
28 21 0.66
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.33
Consensus pattern (27 bp):
TAGGGGTATAAGGTAATTTTGCATACA
Found at i:57694044 original size:8 final size:8
Alignment explanation
Indices: 57694028--57694059 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
57694018 GCCCAAAATA
57694028 CGGCTTTT
1 CGGCTTTT
*
57694036 CGGCATTT
1 CGGCTTTT
57694044 CGGCTTTT
1 CGGCTTTT
57694052 CGGCTTTT
1 CGGCTTTT
57694060 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:57696015 original size:63 final size:63
Alignment explanation
Indices: 57695912--57696038 Score: 218
Period size: 63 Copynumber: 2.0 Consensus size: 63
57695902 GAGGCCGAAA
* *
57695912 TTAGCATGGGGGAAGCCATGGATAGGGCTTTTAAGATTTTCAAGCTCAATAGTAAGTCCGTTC
1 TTAGCATGGGGGAAGCCAAGGATAGGGCTTTCAAGATTTTCAAGCTCAATAGTAAGTCCGTTC
* *
57695975 TTAGCATGGGGGAAGCCAAGGCTAGGGCTTTCAAGCTTTTCAAGCTCAATAGTAAGTCCGTTC
1 TTAGCATGGGGGAAGCCAAGGATAGGGCTTTCAAGATTTTCAAGCTCAATAGTAAGTCCGTTC
57696038 T
1 T
57696039 AACCCCGTTT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (63 bp):
TTAGCATGGGGGAAGCCAAGGATAGGGCTTTCAAGATTTTCAAGCTCAATAGTAAGTCCGTTC
Found at i:57698390 original size:29 final size:29
Alignment explanation
Indices: 57698350--57698452 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
57698340 GTTGAGAGAT
*
57698350 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
*
57698379 TGGCACTAAGTGTGTGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
57698408 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
57698437 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
57698453 TGGCTGATTA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
28 5 0.07
29 62 0.93
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:57704218 original size:123 final size:123
Alignment explanation
Indices: 57703999--57704337 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
57703989 GAATTATGTG
*
57703999 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
57704064 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
57704122 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
57704187 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
57704245 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
57704310 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
57704338 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:57704503 original size:40 final size:40
Alignment explanation
Indices: 57704306--57704507 Score: 233
Period size: 40 Copynumber: 5.0 Consensus size: 40
57704296 TGAATGATAC
* * * * **
57704306 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * * **
57704346 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
57704386 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
57704426 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * **
57704466 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
57704506 CC
1 CC
57704508 TGTTTTATTC
Statistics
Matches: 141, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
Found at i:57707110 original size:46 final size:46
Alignment explanation
Indices: 57706966--57707091 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
57706956 AACCCGCCCC
* *
57706966 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
* * * *
57707012 TAAGTGAACTCGGACACAACTCAACGAGTTCGAACATTCGCATCCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
57707058 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57707092 TGCTCAACCA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:57714084 original size:46 final size:46
Alignment explanation
Indices: 57714017--57714188 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
57714007 AACCCGCCCC
* *
57714017 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTGCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATGCGCATCCA
* *
57714063 TAAGTGAACTCGGACTCAACTCAACGAGTT-TGG-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATGCGC-A--TCCA
** * ** ** *
57714109 TCTGACGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCG
1 TAAG-TGAACTCGGACTCAACTCAACGAGTTCGGGCATGCGCATCCA
57714156 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
57714189 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 61 0.60
47 29 0.29
49 3 0.03
50 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATGCGCATCCA
Found at i:57714129 original size:93 final size:93
Alignment explanation
Indices: 57714022--57714192 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
57714012 GCCCCTAAGT
** *
57714022 GAACTCGGACTCAACTCAACGAGCTCGGGCGTGCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATGCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
57714087 CGAGTTTGGATGCCTAGTTACATCTGAC
66 CGAGTTCGGATGCCTAGTTACATCTGAC
* ** *
57714115 GAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATGCGCATCCATAAGTGAACTCGGACTCAACTCAA
57714180 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57714193 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATGCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTGAC
Found at i:57714208 original size:46 final size:45
Alignment explanation
Indices: 57714019--57714208 Score: 131
Period size: 46 Copynumber: 4.1 Consensus size: 45
57714009 CCCGCCCCTA
* * * * *
57714019 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTGCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCTCAACCATCT
*
57714065 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * * * *
57714112 -GACGAACTCGGACTCAACTCAACGAGTTCGAACAT-TTGCATCCGT-A
1 AG-TGAACTCGGACTCAACTCAACGAGTTCG--GATGCT-CAACCATCT
57714158 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
57714204 AGTGA
1 AGTGA
57714209 CATGTCATGT
Statistics
Matches: 111, Mismatches: 18, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 3 0.03
46 63 0.57
47 29 0.26
49 3 0.03
50 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:57715204 original size:40 final size:40
Alignment explanation
Indices: 57715147--57715411 Score: 354
Period size: 40 Copynumber: 6.7 Consensus size: 40
57715137 CTAACGGGGT
* * * * * *
57715147 TAAGTCCCAAAGACATTTGTGCTAGTGATTAATTCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
57715187 TAAGTCTCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
57715227 TAAGTCCCAAAGGCATTTGTGCGAGTTACTAATTCCGGAC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
57715267 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
57715307 TAAGTCCCGAAGACATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
57715347 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
57715387 TAAGACCCGACGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
57715412 GGTTATATCC
Statistics
Matches: 201, Mismatches: 23, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
39 11 0.05
40 190 0.95
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:57723654 original size:39 final size:39
Alignment explanation
Indices: 57723515--57723695 Score: 222
Period size: 39 Copynumber: 4.6 Consensus size: 39
57723505 TCGTTCAAAC
* * ** * **
57723515 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
57723555 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
57723595 GCCTT--GGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
57723632 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
57723671 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
57723696 CTCGAACATT
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
37 30 0.25
38 2 0.02
39 56 0.46
40 34 0.28
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:57729485 original size:46 final size:46
Alignment explanation
Indices: 57729432--57729607 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
57729422 TATTTGGGCA
57729432 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
57729478 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
57729525 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
57729571 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57729608 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:57729587 original size:93 final size:93
Alignment explanation
Indices: 57729428--57729599 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57729418 GGGATATTTG
* *
57729428 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57729493 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
57729521 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57729586 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
57729600 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:57732593 original size:15 final size:15
Alignment explanation
Indices: 57732554--57732633 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
57732544 GTATCTTGGG
*
57732554 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
57732569 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
57732584 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
57732599 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
57732614 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
57732628 TTTCTT
1 TTTCTT
57732634 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:57732623 original size:30 final size:30
Alignment explanation
Indices: 57732545--57732632 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
57732535 CATAGTATCG
* * *
57732545 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
57732575 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
57732605 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
57732633 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:57735057 original size:46 final size:46
Alignment explanation
Indices: 57735007--57735173 Score: 214
Period size: 46 Copynumber: 3.6 Consensus size: 46
57734997 TATTTGGGCA
57735007 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
57735053 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
57735100 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
57735146 CCCGAGCTCGTTGAGTTGAGTCCGAGTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT
57735174 TAACTTTGGG
Statistics
Matches: 103, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 58 0.56
47 33 0.32
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:57735162 original size:93 final size:93
Alignment explanation
Indices: 57735003--57735173 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
57734993 TGGATATTTG
* *
57735003 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57735068 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
57735096 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57735161 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
57735174 TAACTTTGGG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:57739405 original size:46 final size:46
Alignment explanation
Indices: 57739352--57739527 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
57739342 TATTTGGGCA
57739352 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
57739398 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
57739445 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
57739491 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57739528 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:57739507 original size:93 final size:93
Alignment explanation
Indices: 57739348--57739519 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57739338 GGGATATTTG
* *
57739348 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57739413 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
57739441 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57739506 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
57739520 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:57742490 original size:15 final size:15
Alignment explanation
Indices: 57742470--57742538 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
57742460 GTATCTTGGG
57742470 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
57742485 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
57742500 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
57742515 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
57742530 TTTCTTTAT
1 TTTCTTTAT
57742539 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:57742539 original size:30 final size:30
Alignment explanation
Indices: 57742461--57742548 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
57742451 CATAGTATCG
* * * *
57742461 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
57742491 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
57742521 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
57742549 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:57744970 original size:46 final size:46
Alignment explanation
Indices: 57744920--57745095 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
57744910 TATTTGGGCA
57744920 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
57744966 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
57745013 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
57745059 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57745096 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:57745075 original size:93 final size:93
Alignment explanation
Indices: 57744916--57745087 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57744906 TGGATATTTG
* *
57744916 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57744981 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
57745009 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
57745074 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
57745088 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:57748999 original size:39 final size:40
Alignment explanation
Indices: 57748884--57749027 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
57748874 TCGTTCAAAC
* * ** * **
57748884 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
* * * *
57748924 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
57748964 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
57749003 GCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGACTTAGCCCGGATATCA
57749028 CTCGAACATT
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 51 0.57
40 38 0.43
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
Found at i:57751312 original size:39 final size:40
Alignment explanation
Indices: 57751079--57751328 Score: 267
Period size: 40 Copynumber: 6.3 Consensus size: 40
57751069 CTAACGGGGT
* * *
57751079 TAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
* * *
57751119 TAAGTCTCGAAGGCATTTGTGTGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
* **
57751159 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTTTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
57751199 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* * *
57751239 TAAGTGCCGAAGGCATTTGTGCTAGTGACCATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* * * **
57751279 TAAGACCCGACGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
*
57751317 TAAATCCCGAAG
1 TAAGTCCCGAAG
57751329 ATAATTGGGT
Statistics
Matches: 182, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
38 12 0.07
39 16 0.09
40 153 0.84
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
Found at i:57767293 original size:33 final size:33
Alignment explanation
Indices: 57767251--57767317 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
57767241 TAACTGTGAT
57767251 AAAATCAGGAACTTTTTAGAAGATATTAGAAGA
1 AAAATCAGGAACTTTTTAGAAGATATTAGAAGA
57767284 AAAATCAGGAACTTTTTAGAAGATATTAGAAGA
1 AAAATCAGGAACTTTTTAGAAGATATTAGAAGA
57767317 A
1 A
57767318 TAAGGACTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.27
Consensus pattern (33 bp):
AAAATCAGGAACTTTTTAGAAGATATTAGAAGA
Found at i:57769579 original size:24 final size:24
Alignment explanation
Indices: 57769549--57769719 Score: 297
Period size: 24 Copynumber: 7.1 Consensus size: 24
57769539 GAATGTGACT
* *
57769549 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
57769573 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
57769597 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
57769621 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
57769645 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
57769669 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
57769693 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
57769717 ATA
1 ATA
57769720 TGGTCTTTGC
Statistics
Matches: 141, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 141 1.00
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:57777517 original size:24 final size:24
Alignment explanation
Indices: 57777487--57777657 Score: 297
Period size: 24 Copynumber: 7.1 Consensus size: 24
57777477 GAATGTGACT
* *
57777487 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
57777511 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
57777535 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
57777559 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
57777583 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
57777607 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
57777631 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
57777655 ATA
1 ATA
57777658 TGGTCTTTGC
Statistics
Matches: 141, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 141 1.00
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:57786946 original size:37 final size:36
Alignment explanation
Indices: 57786896--57786982 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
57786886 TACGAAGTCT
57786896 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
57786932 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
57786969 TCACCCGGAACATA
1 T-ACCCGG-ACATA
57786983 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:57787120 original size:49 final size:49
Alignment explanation
Indices: 57787051--57787362 Score: 507
Period size: 49 Copynumber: 6.4 Consensus size: 49
57787041 TTTACCACAT
* *
57787051 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
57787100 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
57787149 ATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * *
57787198 ATATACCTACATTTTCACATTCACCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
57787247 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
57787296 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
57787345 ATATATATACATTTTCAC
1 ATATACATACATTTTCAC
57787363 GAATCTTGAT
Statistics
Matches: 245, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 245 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:57791362 original size:27 final size:27
Alignment explanation
Indices: 57791328--57791606 Score: 350
Period size: 27 Copynumber: 10.3 Consensus size: 27
57791318 AAATGATTAC
*
57791328 TTTGCCCTTATGGGGTAAAATGACTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
* *
57791355 TCTT-CCCTTATGAGGTAAAATAACTAT
1 T-TTGCCCTTATGAGGTAAAATGACTGT
*
57791382 TTTGCCCTTATGAGGTAAACTGACTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
*
57791409 TTCGCCCTTAT-AGGGTAAAATGACTGT
1 TTTGCCCTTATGA-GGTAAAATGACTGT
* *
57791436 TTTGCCCTTGT-AGGGTAAAATGACAGT
1 TTTGCCCTTATGA-GGTAAAATGACTGT
* * *
57791463 TTTGCTCTTATAAGGTAAAATAACTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
57791490 TTTGCCCTTATGAGGTAAAATGACTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
* * *
57791517 TTTGCCCTT-TTAGGGTAAAATGATTAT
1 TTTGCCCTTATGA-GGTAAAATGACTGT
57791544 TTTGCCCTTATGAGGTAAAATGACTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
* *
57791571 TTTGCCCTTATGTGGTAAAATGATTGT
1 TTTGCCCTTATGAGGTAAAATGACTGT
*
57791598 TTTTCCCTT
1 TTTGCCCTT
57791607 TTATGGTAAG
Statistics
Matches: 219, Mismatches: 27, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.02
27 209 0.95
28 5 0.02
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.39
Consensus pattern (27 bp):
TTTGCCCTTATGAGGTAAAATGACTGT
Found at i:57791627 original size:27 final size:27
Alignment explanation
Indices: 57791316--57791627 Score: 168
Period size: 27 Copynumber: 11.6 Consensus size: 27
57791306 CATTAATCGA
* * **
57791316 TAAAATGATTACTTTGCCCTTATGGGG
1 TAAAATGATTATTTTGCCCTTTTATGG
* * *
57791343 TAAAATGACTGTTCTT-CCCTTATGA-GG
1 TAAAATGATTATT-TTGCCCTT-TTATGG
* * *
57791370 TAAAATAACTATTTTGCCCTTATGA-GG
1 TAAAATGATTATTTTGCCCTT-TTATGG
* * * * * *
57791397 TAAACTGACTGTTTCGCCCTTATAGGG
1 TAAAATGATTATTTTGCCCTTTTATGG
* * * *
57791424 TAAAATGACTGTTTTGCCCTTGTAGGG
1 TAAAATGATTATTTTGCCCTTTTATGG
* * * *
57791451 TAAAATGA-CAGTTTTGCTCTTATAAGG
1 TAAAATGATTA-TTTTGCCCTTTTATGG
* * * *
57791478 TAAAATAACTGTTTTGCCCTTATGA-GG
1 TAAAATGATTATTTTGCCCTT-TTATGG
* * *
57791505 TAAAATGACTGTTTTGCCCTTTTAGGG
1 TAAAATGATTATTTTGCCCTTTTATGG
*
57791532 TAAAATGATTATTTTGCCCTTATGA-GG
1 TAAAATGATTATTTTGCCCTT-TTATGG
* * * *
57791559 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGATTATTTTGCCCTTTTATGG
* *
57791586 TAAAATGATTGTTTTTCCCTTTTATGG
1 TAAAATGATTATTTTGCCCTTTTATGG
* *
57791613 TAAGATGAATATTTT
1 TAAAATGATTATTTT
57791628 ACCCATATGT
Statistics
Matches: 230, Mismatches: 45, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
26 5 0.02
27 220 0.96
28 5 0.02
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (27 bp):
TAAAATGATTATTTTGCCCTTTTATGG
Found at i:57791637 original size:54 final size:54
Alignment explanation
Indices: 57791316--57791638 Score: 199
Period size: 54 Copynumber: 6.0 Consensus size: 54
57791306 CATTAATCGA
* * * * * *
57791316 TAAAATGATTACTTTGCCCTTATGGGGTAAAATGACTGTTCTT-CCCTTATGAGG
1 TAAAATGATTATTTTGCCCTTATGAGGTAAAATGAATATT-TTACCCATATGTGG
* * * * * ** *
57791370 TAAAATAACTATTTTGCCCTTATGAGGTAAACTGACTGTTTCGCCCTTATAG-GG
1 TAAAATGATTATTTTGCCCTTATGAGGTAAAATGAATATTTTACCCATAT-GTGG
* * * * * * * **
57791424 TAAAATGACTGTTTTGCCCTTGT-AGGGTAAAATGACA-GTTTTGCTCTTATAAGG
1 TAAAATGATTATTTTGCCCTTATGA-GGTAAAATGA-ATATTTTACCCATATGTGG
* * * * * * * *
57791478 TAAAATAACTGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTTTAG-GG
1 TAAAATGATTATTTTGCCCTTATGAGGTAAAATGAATATTTTACCCATAT-GTGG
* * * *
57791532 TAAAATGATTATTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGATTATTTTGCCCTTATGAGGTAAAATGAATATTTTACCCATATGTGG
* * * *
57791586 TAAAATGATTGTTTTTCCCTT-TTATGGTAAGATGAATATTTTACCCATATGTG
1 TAAAATGATTATTTTGCCCTTATGA-GGTAAAATGAATATTTTACCCATATGTG
57791639 ATGTATATTT
Statistics
Matches: 227, Mismatches: 32, Indels: 20
0.81 0.11 0.07
Matches are distributed among these distances:
53 5 0.02
54 220 0.97
55 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (54 bp):
TAAAATGATTATTTTGCCCTTATGAGGTAAAATGAATATTTTACCCATATGTGG
Found at i:57803051 original size:27 final size:27
Alignment explanation
Indices: 57803020--57803364 Score: 426
Period size: 27 Copynumber: 12.8 Consensus size: 27
57803010 CCTTAATCGA
*
57803020 TAAAATGATTGTTTTGCCCTTAT-AGGG
1 TAAAATGACTGTTTTGCCCTTATGA-GG
* * *
57803047 CAAAATGACTATTCTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
57803074 TAAAATGATTATTTTGCCCTTATTG-GG
1 TAAAATGACTGTTTTGCCCTTA-TGAGG
*
57803101 AAAAATGA-TAGTTTTGCCCTTATGAGG
1 TAAAATGACT-GTTTTGCCCTTATGAGG
* *
57803128 TAAATTGACTGGTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
57803155 TAAAATGACTATTTTGCCCTTGTGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
** *
57803182 TAAAATGACAATTTTGCTCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
57803209 TAAAATAACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
57803236 TAAAATGACTATTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
57803263 TAAAATGACTATTTTGCTCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
57803290 TAAAATGATTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
57803317 TAAAATGACTGTTTCGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
57803344 TAAAATGATTGTTTTGCCCTT
1 TAAAATGACTGTTTTGCCCTT
57803365 TTATGGAAAG
Statistics
Matches: 275, Mismatches: 38, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
26 3 0.01
27 268 0.97
28 4 0.01
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGAGG
Found at i:57803146 original size:81 final size:81
Alignment explanation
Indices: 57803020--57803364 Score: 478
Period size: 81 Copynumber: 4.3 Consensus size: 81
57803010 CCTTAATCGA
* * * * *
57803020 TAAAATGATTGTTTTGCCCTTAT-AGGGCAAAATGACTATTCTGCCCTTATGAGGTAAAATGATT
1 TAAAATGATAGTTTTGCCCTTATGA-GGTAAAATGACTGTTTTGCCCTTATGAGGTAAAATGACT
*
57803084 ATTTTGCCCTTATTGGG
65 ATTTTGCCCTTATGGGG
* * *
57803101 AAAAATGATAGTTTTGCCCTTATGAGGTAAATTGACTGGTTTGCCCTTATGAGGTAAAATGACTA
1 TAAAATGATAGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGAGGTAAAATGACTA
*
57803166 TTTTGCCCTTGTGGGG
66 TTTTGCCCTTATGGGG
* * * *
57803182 TAAAATGACAATTTTGCTCTTATGAGGTAAAATAACTGTTTTGCCCTTATGAGGTAAAATGACTA
1 TAAAATGATAGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGAGGTAAAATGACTA
57803247 TTTTGCCCTTATGGGG
66 TTTTGCCCTTATGGGG
* *
57803263 TAAAATGACTA-TTTTGCTCTTATGAGGTAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACT
1 TAAAATGA-TAGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGAGGTAAAATGACT
* * *
57803327 GTTTCGCCCTTATGTGG
65 ATTTTGCCCTTATGGGG
*
57803344 TAAAATGATTGTTTTGCCCTT
1 TAAAATGATAGTTTTGCCCTT
57803365 TTATGGAAAG
Statistics
Matches: 235, Mismatches: 26, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.00
81 232 0.99
82 2 0.01
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (81 bp):
TAAAATGATAGTTTTGCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATGAGGTAAAATGACTA
TTTTGCCCTTATGGGG
Found at i:57806039 original size:27 final size:26
Alignment explanation
Indices: 57806002--57806138 Score: 148
Period size: 27 Copynumber: 5.2 Consensus size: 26
57805992 TCGTTAAGAC
* *
57806002 CCCCGACTTGTGAAATTATCGAAATA
1 CCCCGATTTGTAAAATTATCGAAATA
* *
57806028 CCCTCGATTTGTGAAATTATCAAAATA
1 CCC-CGATTTGTAAAATTATCGAAATA
57806055 CCCCCGATTTGTAAAATTATCGAAATA
1 -CCCCGATTTGTAAAATTATCGAAATA
* * * *
57806082 CCCCTAATTTTTAAAATTACCAAAATA
1 CCCC-GATTTGTAAAATTATCGAAATA
* * *
57806109 CCCCGATTTGTAAAATGATCGTAATG
1 CCCCGATTTGTAAAATTATCGAAATA
57806135 CCCC
1 CCCC
57806139 TGTAGGGTAA
Statistics
Matches: 93, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 26 0.28
27 64 0.69
28 3 0.03
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (26 bp):
CCCCGATTTGTAAAATTATCGAAATA
Found at i:57806082 original size:54 final size:54
Alignment explanation
Indices: 57806000--57806139 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 54
57805990 GGTCGTTAAG
* * * * *
57806000 ACCCCCGACTTGTGAAATTATCGAAATA-CCCTCGATTTGTGAAATTATCAAAAT
1 ACCCCCGATTTGTAAAATTATCGAAATACCCCT-AATTTGTAAAATTACCAAAAT
*
57806054 ACCCCCGATTTGTAAAATTATCGAAATACCCCTAATTTTTAAAATTACCAAAAT
1 ACCCCCGATTTGTAAAATTATCGAAATACCCCTAATTTGTAAAATTACCAAAAT
* * *
57806108 A-CCCCGATTTGTAAAATGATCGTAATGCCCCT
1 ACCCCCGATTTGTAAAATTATCGAAATACCCCT
57806140 GTAGGGTAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
53 28 0.37
54 44 0.58
55 4 0.05
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.30
Consensus pattern (54 bp):
ACCCCCGATTTGTAAAATTATCGAAATACCCCTAATTTGTAAAATTACCAAAAT
Found at i:57806150 original size:27 final size:27
Alignment explanation
Indices: 57806118--57806180 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
57806108 ACCCCGATTT
* * *
57806118 GTAAAATGATCGTAATGCCCCTGTAGG
1 GTAAAATGAACGTAATACCCCTATAGG
*
57806145 GTAAAATGAACGTAATACCCCTATATG
1 GTAAAATGAACGTAATACCCCTATAGG
57806172 GTAAAATGA
1 GTAAAATGA
57806181 CGATTATGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (27 bp):
GTAAAATGAACGTAATACCCCTATAGG
Found at i:57806408 original size:27 final size:27
Alignment explanation
Indices: 57806324--57806408 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
57806314 AAGTACTGTA
* * *
57806324 CTGGTGACTATGTCACATTCACTGTTAT
1 CTGGTGGCTATGCCACATTTACTGTT-T
* * * *
57806352 -TGGTGGCTATGCCACAATTATTGATA
1 CTGGTGGCTATGCCACATTTACTGTTT
* *
57806378 CTGGTGTCTTTGCCACATTTACTGTTT
1 CTGGTGGCTATGCCACATTTACTGTTT
57806405 CTGG
1 CTGG
57806409 CAGCTACGCT
Statistics
Matches: 43, Mismatches: 13, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (27 bp):
CTGGTGGCTATGCCACATTTACTGTTT
Found at i:57806632 original size:33 final size:33
Alignment explanation
Indices: 57806587--57806681 Score: 136
Period size: 33 Copynumber: 2.9 Consensus size: 33
57806577 TTAGGCCCAC
*
57806587 ACTGATATTGTATAGGGCTAAGGCCCAGACTAT
1 ACTGATACTGTATAGGGCTAAGGCCCAGACTAT
* *
57806620 ATTGATACTGTATAGGGCTAAGGCCCAGACTGT
1 ACTGATACTGTATAGGGCTAAGGCCCAGACTAT
* * *
57806653 ACTAATACTGAATAGGGCTCAGGCCCAGA
1 ACTGATACTGTATAGGGCTAAGGCCCAGA
57806682 TTGTTACTGA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (33 bp):
ACTGATACTGTATAGGGCTAAGGCCCAGACTAT
Found at i:57807277 original size:17 final size:17
Alignment explanation
Indices: 57807255--57807303 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
57807245 ATAGCACTGT
*
57807255 TTACTAGTACTGCACTA
1 TTACTATTACTGCACTA
*
57807272 TTACTATTACTGCACTG
1 TTACTATTACTGCACTA
57807289 TGTACTATTACTGCA
1 T-TACTATTACTGCA
57807304 ATGGGCCAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 16 0.55
18 13 0.45
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.39
Consensus pattern (17 bp):
TTACTATTACTGCACTA
Found at i:57807296 original size:18 final size:17
Alignment explanation
Indices: 57807248--57807303 Score: 76
Period size: 18 Copynumber: 3.2 Consensus size: 17
57807238 GGGTGTTATA
*
57807248 GCACTGTTTACTAGTACT
1 GCACTG-TTACTATTACT
*
57807266 GCACTATTACTATTACT
1 GCACTGTTACTATTACT
57807283 GCACTGTGTACTATTACT
1 GCACTGT-TACTATTACT
57807301 GCA
1 GCA
57807304 ATGGGCCAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
17 16 0.47
18 18 0.53
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (17 bp):
GCACTGTTACTATTACT
Found at i:57808508 original size:71 final size:72
Alignment explanation
Indices: 57808392--57808527 Score: 159
Period size: 71 Copynumber: 1.9 Consensus size: 72
57808382 TTCCATGATC
* ** * * *
57808392 GATGGCTTGAGGTCCTACATGTGTTGCGGATTCTCTGAAGCTTGTGTGAGCATCATCAAATTATT
1 GATGGCTTAAGGTCCTACATGTGTTGCGGATTCTCCAAAACTTGTGTAAGCAGCATCAAATTATT
57808457 AGATAAT
66 AGATAAT
* * * *
57808464 GATGGCTTAAGGTCC-AGCATTTG-TGTGGATTCTCCAAAACTTGTGTAAGTAGCATCGAATTAT
1 GATGGCTTAAGGTCCTA-CATGTGTTGCGGATTCTCCAAAACTTGTGTAAGCAGCATCAAATTAT
57808527 T
65 T
57808528 CTTTATGAAT
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
71 34 0.64
72 19 0.36
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (72 bp):
GATGGCTTAAGGTCCTACATGTGTTGCGGATTCTCCAAAACTTGTGTAAGCAGCATCAAATTATT
AGATAAT
Found at i:57809754 original size:10 final size:10
Alignment explanation
Indices: 57809735--57809766 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
57809725 CGGTCATGTG
57809735 AATA-TTTAC
1 AATATTTTAC
57809744 AATATTTTAC
1 AATATTTTAC
57809754 AATATTTTAC
1 AATATTTTAC
57809764 AAT
1 AAT
57809767 TAGGTCCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (10 bp):
AATATTTTAC
Found at i:57811971 original size:9 final size:9
Alignment explanation
Indices: 57811936--57812016 Score: 62
Period size: 10 Copynumber: 8.8 Consensus size: 9
57811926 ATTAAGTTTT
57811936 TAAAAATT-
1 TAAAAATTA
57811944 TAAAAATTCCA
1 TAAAAATT--A
57811955 -ACAAAATTA
1 TA-AAAATTA
57811964 TAAAAATTA
1 TAAAAATTA
*
57811973 TTAAGAATTA
1 -TAAAAATTA
*
57811983 TTAAAAAGTA
1 -TAAAAATTA
57811993 TAAAAA--A
1 TAAAAATTA
57812000 TAAAAATATA
1 TAAAAAT-TA
57812010 TAAAAAT
1 TAAAAAT
57812017 ATTTTGTAGT
Statistics
Matches: 61, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
7 7 0.11
8 8 0.13
9 14 0.23
10 26 0.43
11 6 0.10
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (9 bp):
TAAAAATTA
Found at i:57812005 original size:16 final size:16
Alignment explanation
Indices: 57811984--57812017 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
57811974 TAAGAATTAT
57811984 TAAAAAGTATA-AAAAA
1 TAAAAA-TATATAAAAA
57812000 TAAAAATATATAAAAA
1 TAAAAATATATAAAAA
57812016 TA
1 TA
57812018 TTTTGTAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (16 bp):
TAAAAATATATAAAAA
Found at i:57813940 original size:67 final size:66
Alignment explanation
Indices: 57813833--57814054 Score: 208
Period size: 68 Copynumber: 3.4 Consensus size: 66
57813823 AACACTTAGT
*
57813833 ACCACCCATGTGACCTAGC--CATTTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCT
1 ACCACACATGTGACCTAGCTACA-TTTATCTCGTAGCTCTCTTGTCTACATGGTGT-CTTCACCT
57813896 GGA
64 GGA
* * *
57813899 ACCACACATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTACATGGTATACATC-CC--
1 ACCACACATGTGACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGT-CTTCACCTG
*
57813961 GT
65 GA
* * * *
57813963 ATCACACATGTGACCTAGCTACCACATAGTATCTCGTAGCTCTCTTGTAC-ACATGATG--TGCA
1 ACCACACATGTGACCTAGCT---ACAT-TTATCTCGTAGCTCTCTTGT-CTACATGGTGTCTTCA
* *
57814025 CTTGGC
61 CCTGGA
*
57814031 ACCATACATGTGACCTAGCTACAT
1 ACCACACATGTGACCTAGCTACAT
57814055 ACCATCTATA
Statistics
Matches: 129, Mismatches: 17, Indels: 21
0.77 0.10 0.13
Matches are distributed among these distances:
64 20 0.16
65 5 0.04
66 21 0.16
67 37 0.29
68 45 0.35
69 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (66 bp):
ACCACACATGTGACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCTTCACCTGG
A
Found at i:57815808 original size:17 final size:19
Alignment explanation
Indices: 57815786--57815834 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
57815776 CTACAAGATA
57815786 AATATTAAATTAT-A-TTT
1 AATATTAAATTATCACTTT
*
57815803 AATATTAAGATAATCACTTT
1 AATATTAA-ATTATCACTTT
57815823 AATATTAAATTA
1 AATATTAAATTA
57815835 ATAAAATACT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 8 0.30
18 4 0.15
19 4 0.15
20 11 0.41
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (19 bp):
AATATTAAATTATCACTTT
Found at i:57815835 original size:25 final size:26
Alignment explanation
Indices: 57815801--57815852 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
57815791 TAAATTATAT
*
57815801 TTAATATTAAGATAATCACT-TTAATA
1 TTAATATTAAGAAAAT-ACTATTAATA
*
57815827 TTAA-ATTAATAAAATACTATTAATA
1 TTAATATTAAGAAAATACTATTAATA
57815852 T
1 T
57815853 AGGTATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 3 0.13
25 16 0.70
26 4 0.17
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (26 bp):
TTAATATTAAGAAAATACTATTAATA
Found at i:57819205 original size:50 final size:50
Alignment explanation
Indices: 57819029--57819207 Score: 225
Period size: 50 Copynumber: 3.6 Consensus size: 50
57819019 GCCAATTATA
*
57819029 CAAGATCAAATATAATATCACATATG-AGCTTACCTATATGGCCGAATATG
1 CAAGATCAAATATAACATCACATATGTA-CTTACCTATATGGCCGAATATG
* * * * *
57819079 CAAGATCAAATTTAATATCACATATGTGCTTACCAATATGGCTGAATATG
1 CAAGATCAAATATAACATCACATATGTACTTACCTATATGGCCGAATATG
* * * * *
57819129 CAAGATCAAATTTAACATCATATATGTACTTACTTATATGGCCGAATTTT
1 CAAGATCAAATATAACATCACATATGTACTTACCTATATGGCCGAATATG
* *
57819179 CAAGATCCAATACAACATCACATATGTAC
1 CAAGATCAAATATAACATCACATATGTAC
57819208 ATGTCACGCC
Statistics
Matches: 112, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
50 112 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (50 bp):
CAAGATCAAATATAACATCACATATGTACTTACCTATATGGCCGAATATG
Found at i:57821117 original size:54 final size:53
Alignment explanation
Indices: 57821033--57821141 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 53
57821023 AGGAAACGTC
*
57821033 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAACTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TAACTGTT
* * * *
57821087 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTAACTGTT
57821140 CT
1 CT
57821142 AGCAGCCATG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 9 0.18
54 41 0.82
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTAACTGTT
Found at i:57821140 original size:26 final size:26
Alignment explanation
Indices: 57821033--57821141 Score: 146
Period size: 27 Copynumber: 4.1 Consensus size: 26
57821023 AGGAAACGTC
* *
57821033 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
57821060 CTGGTGGCTCTGCCACATATAACTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
57821087 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
57821114 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
57821140 CT
1 CT
57821142 AGCAGCCATG
Statistics
Matches: 74, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 14 0.19
27 58 0.78
28 2 0.03
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:57822461 original size:93 final size:93
Alignment explanation
Indices: 57822349--57822520 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
57822339 CGCCCATAAG
* *
57822349 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
57822414 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
57822442 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
57822507 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
57822521 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:57822517 original size:46 final size:46
Alignment explanation
Indices: 57822342--57822517 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
57822332 TGTAACCCGC
* * *
57822342 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
57822388 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
57822438 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
57822481 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
57822518 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:57831185 original size:40 final size:40
Alignment explanation
Indices: 57831077--57831286 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
57831067 CGGGATTTAA
* * * * *
57831077 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
57831117 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
57831157 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
57831197 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
57831237 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
57831277 CCGGATATAT
1 CCGGATATAT
57831287 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:57838406 original size:40 final size:40
Alignment explanation
Indices: 57838298--57838507 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
57838288 CGGGATTTAA
* * * * *
57838298 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
57838338 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
57838378 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
57838418 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
57838458 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
57838498 CCGGATATAT
1 CCGGATATAT
57838508 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:57839707 original size:46 final size:46
Alignment explanation
Indices: 57839532--57839707 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
57839522 TGTAACCCGC
* * * *
57839532 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
57839578 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
57839628 CTCA-CA---AACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
57839671 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57839708 TCCTCAACCA
Statistics
Matches: 109, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 1 0.01
46 61 0.56
47 27 0.25
49 1 0.01
50 5 0.05
51 4 0.04
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:57842346 original size:28 final size:28
Alignment explanation
Indices: 57842306--57842362 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
57842296 AACAGCATAG
57842306 TAAACCAAGTTACATTCAATATAAATGA
1 TAAACCAAGTTACATTCAATATAAATGA
57842334 TAAACCAAGTTACATTCAATATAAATGA
1 TAAACCAAGTTACATTCAATATAAATGA
57842362 T
1 T
57842363 GTTTAATTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.30
Consensus pattern (28 bp):
TAAACCAAGTTACATTCAATATAAATGA
Found at i:57845995 original size:50 final size:50
Alignment explanation
Indices: 57845866--57846063 Score: 213
Period size: 50 Copynumber: 4.0 Consensus size: 50
57845856 AGCCGAAGCT
* * *
57845866 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACAC-CTGCGA-C-CAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC-GCGACCTCAGC
*
57845914 AGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCAGC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCAGC
** * * * *
57845965 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCAGC
* * * * *
57846015 TTTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTCA
1 ATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCA
57846064 CAATAGATCA
Statistics
Matches: 126, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.29
50 48 0.38
51 40 0.32
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (50 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCTCAGC
Found at i:57846051 original size:101 final size:99
Alignment explanation
Indices: 57845878--57846063 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 99
57845868 CTGGTACGCA
*
57845878 TAGTAGCCTGCACTTAGTACTACACCTGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACCTGCGACCAACAGTCTGGTACACATAGTAGCCTGCACTTA
*
57845943 GTACTACACACGTGACCTCAGCATCTAATACACG
66 GTACTACACACGCGACCTCAGCATCTAATACACG
* * * *
57845977 TAGTAGCCTGCACTTAGTACTACACAC-GTGATC-ACAGTTTTTGGGTACGCATAGTAGCCTGCA
1 TAGTAGCCTGCACTTAGTACTACAC-CTGCGACCAACAG--TCT-GGTACACATAGTAGCCTGCA
*
57846040 CTTAGTACTACACATGCGACCTCA
62 CTTAGTACTACACACGCGACCTCA
57846064 CAATAGATCA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
98 4 0.05
99 29 0.38
100 3 0.04
101 40 0.53
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACCTGCGACCAACAGTCTGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCAGCATCTAATACACG
Done.