Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 20 of 335
Found at i:7537087 original size:22 final size:21
Alignment explanation
Indices: 7537053--7537093 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
7537043 CCAATCCCAT
*
7537053 GCATCAGATAATAACAACATG
1 GCATCAGAAAATAACAACATG
7537074 GCATGCAGAAAATAACAACA
1 GCAT-CAGAAAATAACAACA
7537094 GTCAAACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.51, C:0.20, G:0.15, T:0.15
Consensus pattern (21 bp):
GCATCAGAAAATAACAACATG
Found at i:7538677 original size:26 final size:25
Alignment explanation
Indices: 7538648--7538752 Score: 165
Period size: 26 Copynumber: 4.0 Consensus size: 25
7538638 AATGCCCATG
7538648 ATGGAACATTTACCTAAGCCATTATC
1 ATGGAACATTTACCTAA-CCATTATC
7538674 ATGGAACATTTACCTAACTCATTATC
1 ATGGAACATTTACCTAAC-CATTATC
*
7538700 ATGGAATATTTACCTAATCCATTATC
1 ATGGAACATTTACCTAA-CCATTATC
7538726 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAA-CCATTATC
7538752 A
1 A
7538753 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
25 1 0.01
26 72 0.97
27 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (25 bp):
ATGGAACATTTACCTAACCATTATC
Found at i:7538726 original size:52 final size:52
Alignment explanation
Indices: 7538648--7538752 Score: 183
Period size: 52 Copynumber: 2.0 Consensus size: 52
7538638 AATGCCCATG
*
7538648 ATGGAACATTTACCTAAGCCATTATCATGGAACATTTACCTAACTCATTATC
1 ATGGAACATTTACCTAAGCCATTATCATGGAACATTTACCTAACCCATTATC
* *
7538700 ATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAAGCCATTATCATGGAACATTTACCTAACCCATTATC
7538752 A
1 A
7538753 ATTTGTACCA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (52 bp):
ATGGAACATTTACCTAAGCCATTATCATGGAACATTTACCTAACCCATTATC
Found at i:7539149 original size:41 final size:41
Alignment explanation
Indices: 7539092--7539223 Score: 228
Period size: 41 Copynumber: 3.2 Consensus size: 41
7539082 GGCGGGGCGT
7539092 CGGTCACCGGTCCGTCACCGGACCTTCGCCGACGCCGGTGC
1 CGGTCACCGGTCCGTCACCGGACCTTCGCCGACGCCGGTGC
7539133 CGGTCACCGGTCCGTCACCGGACCTTCGCCGACGCCGGTGC
1 CGGTCACCGGTCCGTCACCGGACCTTCGCCGACGCCGGTGC
* * *
7539174 CGGTCACTGGTCCGTCACCGGACCTTCGCCGGCGTCGGTGC
1 CGGTCACCGGTCCGTCACCGGACCTTCGCCGACGCCGGTGC
*
7539215 CGGCCACCG
1 CGGTCACCG
7539224 TGCACGGTGG
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 86 1.00
ACGTcount: A:0.09, C:0.43, G:0.33, T:0.15
Consensus pattern (41 bp):
CGGTCACCGGTCCGTCACCGGACCTTCGCCGACGCCGGTGC
Found at i:7539289 original size:26 final size:25
Alignment explanation
Indices: 7539254--7539311 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
7539244 TAAAACTCTA
7539254 ATTTTTTTCTCTTTT-TTTGCTTTTT
1 ATTTTTTTCT-TTTTATTTGCTTTTT
*
7539279 ATTTGTTTTCTTTTTATTTTCTTTTT
1 ATTT-TTTTCTTTTTATTTGCTTTTT
*
7539305 ATATTTT
1 ATTTTTT
7539312 CGTATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 11 0.38
26 18 0.62
ACGTcount: A:0.09, C:0.09, G:0.03, T:0.79
Consensus pattern (25 bp):
ATTTTTTTCTTTTTATTTGCTTTTT
Found at i:7539293 original size:15 final size:16
Alignment explanation
Indices: 7539268--7539297 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7539258 TTTTCTCTTT
7539268 TTTTGCTTTTTATTTG
1 TTTTGCTTTTTATTTG
7539284 TTTT-CTTTTTATTT
1 TTTTGCTTTTTATTT
7539298 TCTTTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.80
Consensus pattern (16 bp):
TTTTGCTTTTTATTTG
Found at i:7540341 original size:29 final size:31
Alignment explanation
Indices: 7540290--7540350 Score: 81
Period size: 29 Copynumber: 2.0 Consensus size: 31
7540280 ATACATTTGA
*
7540290 ACCACAATTAAATTTTCACATATATAATTAC
1 ACCACAATTAAATATTCACATATATAATTAC
* *
7540321 ACCA-AATTAAA-ATTCATATATATGATTAC
1 ACCACAATTAAATATTCACATATATAATTAC
7540350 A
1 A
7540351 TATTAAATCG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 16 0.59
30 7 0.26
31 4 0.15
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (31 bp):
ACCACAATTAAATATTCACATATATAATTAC
Found at i:7542763 original size:2 final size:2
Alignment explanation
Indices: 7542756--7542780 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7542746 TTTTCTAAAT
7542756 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7542781 TTGACATGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7546074 original size:16 final size:17
Alignment explanation
Indices: 7546052--7546101 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
7546042 TTTTAAAATT
7546052 TTAAAAATTAAAAAAAA
1 TTAAAAATTAAAAAAAA
**
7546069 TTAAAAATTAAAAATCA
1 TTAAAAATTAAAAAAAA
7546086 TTAAAATTATTAAAAA
1 TTAAAA--ATTAAAAA
7546102 TATATTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 21 0.72
19 8 0.28
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (17 bp):
TTAAAAATTAAAAAAAA
Found at i:7550619 original size:13 final size:13
Alignment explanation
Indices: 7550600--7550632 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7550590 TTTTGCATTT
7550600 TATGTGTGAGAAAA
1 TATGTGTGA-AAAA
7550614 -ATGTGTGAAAAA
1 TATGTGTGAAAAA
7550626 TATGTGT
1 TATGTGT
7550633 TTACTTAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.33
Consensus pattern (13 bp):
TATGTGTGAAAAA
Found at i:7557881 original size:15 final size:15
Alignment explanation
Indices: 7557856--7557893 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7557846 AGACCATGGA
*
7557856 AGAAGAGGTGGA-GT
1 AGAAGAAGTGGAGGT
7557870 ATGAAGAAGTGGAGGT
1 A-GAAGAAGTGGAGGT
7557886 AGAAGAAG
1 AGAAGAAG
7557894 AAGGAGAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 17 0.81
16 3 0.14
ACGTcount: A:0.42, C:0.00, G:0.45, T:0.13
Consensus pattern (15 bp):
AGAAGAAGTGGAGGT
Found at i:7557892 original size:3 final size:3
Alignment explanation
Indices: 7557886--7557954 Score: 77
Period size: 3 Copynumber: 23.0 Consensus size: 3
7557876 AAGTGGAGGT
* * * * *
7557886 AGA AGA AGA AGG AGA GGA AGA A-A TAGA AGA GGA AGT GGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA -AGA AGA AGA AGA AGA AGA AGA
7557931 AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA
7557955 CCTGGATGTT
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
2 1 0.02
3 52 0.96
4 1 0.02
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.03
Consensus pattern (3 bp):
AGA
Found at i:7557893 original size:18 final size:17
Alignment explanation
Indices: 7557872--7557932 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 17
7557862 GGTGGAGTAT
7557872 GAAGAAGTGGAGGTAGAA
1 GAAGAAG-GGAGGTAGAA
*
7557890 GAAGAAGGAGAGGAAGAA
1 GAAGAAGG-GAGGTAGAA
* *
7557908 -ATAGAAGAGGAAGTGGAA
1 GA-AGAAG-GGAGGTAGAA
7557926 GAAGAAG
1 GAAGAAG
7557933 AAGAAGAAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 2 0.06
18 31 0.89
19 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.43, T:0.07
Consensus pattern (17 bp):
GAAGAAGGGAGGTAGAA
Found at i:7562308 original size:21 final size:21
Alignment explanation
Indices: 7562284--7562324 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7562274 CTTCATTATC
7562284 TTCTTATTCG-TCTTGTTCTTG
1 TTCTTATTCGAT-TTGTTCTTG
*
7562305 TTCTTCTTCGATTTGTTCTT
1 TTCTTATTCGATTTGTTCTT
7562325 CTTTATGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.05, C:0.20, G:0.12, T:0.63
Consensus pattern (21 bp):
TTCTTATTCGATTTGTTCTTG
Found at i:7585472 original size:63 final size:63
Alignment explanation
Indices: 7585363--7585489 Score: 193
Period size: 63 Copynumber: 2.0 Consensus size: 63
7585353 AAGTATGGTG
* *
7585363 CTTTAGTGCCATATGGTATATCTATCTCAACCATTATAAACATGCCATACTTGGCACAATAGA
1 CTTTAGTGCCATATGGTATAGCTATCTCAACCATTATAAACATGCCATACTTGGCACAAAAGA
* * *
7585426 CTTTGGTGCCATATGGTATAGCTATCTTC-ACCATTATAAGCCTGCCATACTTGGCACAAAAGA
1 CTTTAGTGCCATATGGTATAGCTATC-TCAACCATTATAAACATGCCATACTTGGCACAAAAGA
7585489 C
1 C
7585490 AGATACACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
63 56 0.97
64 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (63 bp):
CTTTAGTGCCATATGGTATAGCTATCTCAACCATTATAAACATGCCATACTTGGCACAAAAGA
Found at i:7587766 original size:21 final size:21
Alignment explanation
Indices: 7587727--7587766 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7587717 ACTAAATGAC
* *
7587727 AAAAAAATCTTTTTTTTTTTT
1 AAAAAAATCTTATTATTTTTT
*
7587748 AAAAAATTCTTATTATTTT
1 AAAAAAATCTTATTATTTT
7587767 CTCTCTATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
AAAAAAATCTTATTATTTTTT
Found at i:7588140 original size:22 final size:22
Alignment explanation
Indices: 7588115--7588157 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7588105 TATCCAAACA
7588115 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
7588137 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
7588158 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:7588161 original size:11 final size:11
Alignment explanation
Indices: 7588122--7588162 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
7588112 ACAATAACAA
7588122 CAAAATAGTAG
1 CAAAATAGTAG
* *
7588133 CAACATAATAG
1 CAAAATAGTAG
*
7588144 TAAAATAGTAG
1 CAAAATAGTAG
7588155 CAAAATAG
1 CAAAATAG
7588163 AGAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:7588170 original size:22 final size:22
Alignment explanation
Indices: 7588123--7588172 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
7588113 CAATAACAAC
* *
7588123 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAGCAAAATAAGAGT
7588145 AAAATAGTAGCAAAATAGAGAG-
1 AAAATAGTAGCAAAATA-AGAGT
7588167 AAAATA
1 AAAATA
7588173 ATAAGAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.60, C:0.06, G:0.16, T:0.18
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAAGAGT
Found at i:7592258 original size:2 final size:2
Alignment explanation
Indices: 7592204--7592242 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7592194 TGATAATTTA
7592204 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7592243 ACCAAATTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7593232 original size:18 final size:18
Alignment explanation
Indices: 7593209--7593251 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7593199 GAATAATTAT
*
7593209 TTATTCAGCAACAGTCAA
1 TTATTCAGCAACAATCAA
* *
7593227 TTATTCGGTAACAATCAA
1 TTATTCAGCAACAATCAA
7593245 TTATTCA
1 TTATTCA
7593252 ATAATAACCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (18 bp):
TTATTCAGCAACAATCAA
Found at i:7593395 original size:18 final size:17
Alignment explanation
Indices: 7593288--7593425 Score: 73
Period size: 18 Copynumber: 7.7 Consensus size: 17
7593278 CAATTGATCG
* *
7593288 GTTATCCAGTAACAGTCA
1 GTTATTCAGTAATA-TCA
* * *
7593306 ATTATTCAATAAAATCA
1 GTTATTCAGTAATATCA
* *
7593323 GATATTCAGTAACTATTAA
1 GTTATTCAGTAA-TA-TCA
* **
7593342 GCTATTCAGTAGCAGTCA
1 GTTATTCAGTAATA-TCA
7593360 -TTCATTCAGTGACA-ATCA
1 GTT-ATTCAGT-A-ATATCA
7593378 GTTATTCAGTAATGATCA
1 GTTATTCAGTAAT-ATCA
* *
7593396 ATTATTCAATAATATTCA
1 GTTATTCAGTAATA-TCA
7593414 GTTATTCAGTAA
1 GTTATTCAGTAA
7593426 CAGTCTAATA
Statistics
Matches: 91, Mismatches: 20, Indels: 18
0.71 0.16 0.14
Matches are distributed among these distances:
16 1 0.01
17 15 0.16
18 59 0.65
19 16 0.18
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.36
Consensus pattern (17 bp):
GTTATTCAGTAATATCA
Found at i:7593443 original size:18 final size:18
Alignment explanation
Indices: 7593415--7593479 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
7593405 TAATATTCAG
*
7593415 TTATTCAGTAACAGTCTAA
1 TTATCCAGTAACAGTC-AA
7593434 -TATCCAGTAACAGTCAA
1 TTATCCAGTAACAGTCAA
* *
7593451 TTATCCGGTAACAGCCAA
1 TTATCCAGTAACAGTCAA
*
7593469 TTATTCAGTAA
1 TTATCCAGTAA
7593480 TAATCAGTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
17 2 0.05
18 38 0.95
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (18 bp):
TTATCCAGTAACAGTCAA
Found at i:7593478 original size:36 final size:37
Alignment explanation
Indices: 7593394--7593479 Score: 86
Period size: 36 Copynumber: 2.4 Consensus size: 37
7593384 CAGTAATGAT
* * * * *
7593394 CAATTATTCAATAATATTCAGTTATTCAGTAACAGTC
1 CAATTATTCAGTAACAGTCAATTATCCAGTAACAGTC
* * *
7593431 TAA-TATCCAGTAACAGTCAATTATCCGGTAACAG-C
1 CAATTATTCAGTAACAGTCAATTATCCAGTAACAGTC
7593466 CAATTATTCAGTAA
1 CAATTATTCAGTAA
7593480 TAATCAGTTA
Statistics
Matches: 38, Mismatches: 10, Indels: 3
0.75 0.20 0.06
Matches are distributed among these distances:
35 3 0.08
36 33 0.87
37 2 0.05
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (37 bp):
CAATTATTCAGTAACAGTCAATTATCCAGTAACAGTC
Found at i:7593710 original size:45 final size:45
Alignment explanation
Indices: 7593651--7593757 Score: 153
Period size: 45 Copynumber: 2.4 Consensus size: 45
7593641 CGGAACAAAT
* * *
7593651 TCGG-AACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAA
1 TCGGTAACAGTAACAGTAACAATATTCAACACACAAAATGCCGAA
* *
7593695 TCGGTAACGGTAACAGTAACAATATTCGACACACAAAATGCCGAA
1 TCGGTAACAGTAACAGTAACAATATTCAACACACAAAATGCCGAA
*
7593740 TCGGTAACAGTAGCAGTA
1 TCGGTAACAGTAACAGTA
7593758 GCGGTAACAG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 4 0.07
45 51 0.93
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.19
Consensus pattern (45 bp):
TCGGTAACAGTAACAGTAACAATATTCAACACACAAAATGCCGAA
Found at i:7594023 original size:5 final size:5
Alignment explanation
Indices: 7594015--7594060 Score: 74
Period size: 5 Copynumber: 9.0 Consensus size: 5
7594005 ATTCCTTTCC
*
7594015 ATTCA ATTCA ATTCA ATTCA ATTCA ATTTA ATTCA ATTCAA ATTCA
1 ATTCA ATTCA ATTCA ATTCA ATTCA ATTCA ATTCA ATTC-A ATTCA
7594061 CTTTTCCACT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 33 0.87
6 5 0.13
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTCA
Found at i:7594439 original size:21 final size:21
Alignment explanation
Indices: 7594414--7594474 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
7594404 TTCAATTTCA
7594414 ATTCAATAA-CAATTCACATAT
1 ATTCAATAATCAATTCA-ATAT
7594435 ATTC-ATAAATCAATTCAATAT
1 ATTCAAT-AATCAATTCAATAT
* * *
7594456 AATCAATATTCAATCCAAT
1 ATTCAATAATCAATTCAAT
7594475 TCATATAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 2 0.06
21 23 0.68
22 9 0.26
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (21 bp):
ATTCAATAATCAATTCAATAT
Found at i:7595690 original size:27 final size:28
Alignment explanation
Indices: 7595626--7595694 Score: 79
Period size: 27 Copynumber: 2.4 Consensus size: 28
7595616 GAATATCCAA
*
7595626 CCCAAACACACCCGGAATATTATAAATCCT
1 CCCAAACACA-CCGG-ATATAATAAATCCT
*
7595656 -CCATAACACACCGG-TATAATATATCCT
1 CCCA-AACACACCGGATATAATAAATCCT
7595683 CCCAAACACACC
1 CCCAAACACACC
7595695 AATAAGGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
27 19 0.54
28 3 0.09
29 7 0.20
30 6 0.17
ACGTcount: A:0.39, C:0.36, G:0.06, T:0.19
Consensus pattern (28 bp):
CCCAAACACACCGGATATAATAAATCCT
Found at i:7596322 original size:12 final size:12
Alignment explanation
Indices: 7596307--7596337 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7596297 TTCTCTTTTA
7596307 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
7596319 TTTTTCTTTCTC
1 TTTTTCTTTCCC
7596331 TTTTTCT
1 TTTTTCT
7596338 CCCTTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:7596438 original size:16 final size:16
Alignment explanation
Indices: 7596417--7596447 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7596407 TTTATTATTT
7596417 TATTAACATAATATAA
1 TATTAACATAATATAA
*
7596433 TATTAATATAATATA
1 TATTAACATAATATA
7596448 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:7598735 original size:28 final size:28
Alignment explanation
Indices: 7598711--7598773 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
7598701 CTCAGTGTAT
7598711 AAAATATTGAGAATGGCACTTAGTGTGC
1 AAAATATTGAGAATGGCACTTAGTGTGC
* * *
7598739 GAGATATTGAGAATGACACTTAGTGTGC
1 AAAATATTGAGAATGGCACTTAGTGTGC
7598767 AAAATAT
1 AAAATAT
7598774 CGAATGATTC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.29
Consensus pattern (28 bp):
AAAATATTGAGAATGGCACTTAGTGTGC
Found at i:7599133 original size:20 final size:20
Alignment explanation
Indices: 7599108--7599148 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
7599098 GTGAAATGAG
7599108 AAGCATAGGTGAAAATGCCT
1 AAGCATAGGTGAAAATGCCT
7599128 AAGCATAGGTGAAAATGCCT
1 AAGCATAGGTGAAAATGCCT
7599148 A
1 A
7599149 TGTCATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (20 bp):
AAGCATAGGTGAAAATGCCT
Found at i:7601056 original size:2 final size:2
Alignment explanation
Indices: 7601051--7601079 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7601041 TTTTTTACTT
7601051 TA TA TA TA TA TA TA TA TA TA TA -A TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7601080 ATAACAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7603498 original size:14 final size:12
Alignment explanation
Indices: 7603469--7603493 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7603459 TTTTTTTGTC
7603469 TAAATCTATTTT
1 TAAATCTATTTT
7603481 TAAATCTATTTT
1 TAAATCTATTTT
7603493 T
1 T
7603494 TTAAACTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (12 bp):
TAAATCTATTTT
Found at i:7606355 original size:24 final size:23
Alignment explanation
Indices: 7606301--7606366 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 23
7606291 ACCCATTAAA
7606301 AATTAATAATCTTAAAAGCTCAAACC
1 AATTAA-AAT-TTAAAA-CTCAAACC
7606327 AATTAAAATTTAAAACTCAATACTC
1 AATTAAAATTTAAAACTCAA-AC-C
*
7606352 -ATTAATATTTAAAAC
1 AATTAAAATTTAAAAC
7606367 CTAAATTGGT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
23 5 0.14
24 22 0.59
25 4 0.11
26 6 0.16
ACGTcount: A:0.52, C:0.15, G:0.02, T:0.32
Consensus pattern (23 bp):
AATTAAAATTTAAAACTCAAACC
Found at i:7610162 original size:28 final size:29
Alignment explanation
Indices: 7610113--7610169 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
7610103 TAATATAATA
*
7610113 TTAATAATTTAAAGATATAATTAAAATTT
1 TTAATAATTTAAAGATAGAATTAAAATTT
*
7610142 TTAA-AATTTAAA-ATAAGAATTATAATTT
1 TTAATAATTTAAAGAT-AGAATTAAAATTT
7610170 AATTCACGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 2 0.08
28 19 0.76
29 4 0.16
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (29 bp):
TTAATAATTTAAAGATAGAATTAAAATTT
Found at i:7611144 original size:12 final size:12
Alignment explanation
Indices: 7611127--7611152 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7611117 TTAATTAATT
7611127 TAAAAAATTAAA
1 TAAAAAATTAAA
7611139 TAAAAAATTAAA
1 TAAAAAATTAAA
7611151 TA
1 TA
7611153 TTTTTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (12 bp):
TAAAAAATTAAA
Found at i:7618263 original size:20 final size:19
Alignment explanation
Indices: 7618227--7618268 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
7618217 CACTTTTATC
*
7618227 TTTTTCATGTCTTTTCTTTG
1 TTTTTCATGTCTGTTC-TTG
7618247 TTTTTC-TGTTCTGTTCTTG
1 TTTTTCATG-TCTGTTCTTG
7618266 TTT
1 TTT
7618269 AATTGTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.02, C:0.14, G:0.12, T:0.71
Consensus pattern (19 bp):
TTTTTCATGTCTGTTCTTG
Found at i:7621190 original size:46 final size:45
Alignment explanation
Indices: 7621130--7621395 Score: 339
Period size: 46 Copynumber: 6.0 Consensus size: 45
7621120 TTTGACATGA
* * * * * *
7621130 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** *
7621176 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
7621222 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
7621268 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
7621314 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
7621352 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
7621396 AGAGCACACT
Statistics
Matches: 197, Mismatches: 13, Indels: 20
0.86 0.06 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 149 0.76
47 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:7621359 original size:38 final size:38
Alignment explanation
Indices: 7621308--7621383 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
7621298 ACATTTTATA
7621308 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
7621346 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
7621384 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:7623547 original size:11 final size:11
Alignment explanation
Indices: 7623531--7623582 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
7623521 TATACTAAAT
7623531 AAATAATAATA
1 AAATAATAATA
*
7623542 AAATAAT-ATT
1 AAATAATAATA
* *
7623552 AAATATCTCATA
1 AAATA-ATAATA
*
7623564 AAATATTAATA
1 AAATAATAATA
7623575 AAATAATA
1 AAATAATA
7623583 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:7624778 original size:2 final size:2
Alignment explanation
Indices: 7624771--7624799 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7624761 AAGTATAGTT
7624771 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7624800 CTTGTGTGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7625670 original size:16 final size:15
Alignment explanation
Indices: 7625629--7625680 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
7625619 TGGTTCATTG
*
7625629 TAATAGAATAGAACTA
1 TAAT-GAATAGAGCTA
7625645 TAATTGAATAGAGCTA
1 TAA-TGAATAGAGCTA
*
7625661 TAATGAAATAGAGCTG
1 TAATG-AATAGAGCTA
7625677 TAAT
1 TAAT
7625681 TAGTAATTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 2 0.06
16 29 0.91
17 1 0.03
ACGTcount: A:0.48, C:0.06, G:0.17, T:0.29
Consensus pattern (15 bp):
TAATGAATAGAGCTA
Found at i:7631662 original size:29 final size:29
Alignment explanation
Indices: 7631620--7631677 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
7631610 TCAAAGGTTC
7631620 TAACAAACCCAATTTACAGAAGCTGCAAA
1 TAACAAACCCAATTTACAGAAGCTGCAAA
7631649 TAACAAACCCAATTTACAGAAGCTGCAAA
1 TAACAAACCCAATTTACAGAAGCTGCAAA
7631678 ACATGATTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.24, G:0.10, T:0.17
Consensus pattern (29 bp):
TAACAAACCCAATTTACAGAAGCTGCAAA
Found at i:7638088 original size:132 final size:131
Alignment explanation
Indices: 7637820--7638212 Score: 528
Period size: 132 Copynumber: 3.0 Consensus size: 131
7637810 TTGCCTCGTC
** * * * * * * *
7637820 TTAGAAAACGCGAGTGAAATTCCAAAGGGATATTCGATTATTTTGAACAAAC-AGGAGATTGCGA
1 TTAGAAAACATGAATGAAATTCTAAAGGGACATTCGATTATCTTGAGCAAACGA-GAAATTGCAA
* * * ** * *
7637884 CCCAGCACGATA-GGCACTATTCCCCGAATTGCCAAACATCGAACATTTCCTTCATTTTAAAGAG
65 CCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAA-ATCGAACATCGCCTTCGTTTTAAAGAA
7637948 TTT
129 TTT
*
7637951 TTAGAAAACATGAATGAAATTCTAAAGGGACATTCGATTATGTTGAGCAAACGAGAAATTGCAAC
1 TTAGAAAACATGAATGAAATTCTAAAGGGACATTCGATTATCTTGAGCAAACGAGAAATTGCAAC
7638016 CCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGAAT
66 CCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAA-ATCGAACATCGCCTTCGTTTTAAAGAAT
7638081 TT
130 TT
* *
7638083 TTAGAAAACATGAATGAAATTCTAAAGAGACCTTCGATTATCTTGAGCAAACGAGAAATTGCAAC
1 TTAGAAAACATGAATGAAATTCTAAAGGGACATTCGATTATCTTGAGCAAACGAGAAATTGCAAC
* *
7638148 CCACCACGTTAGGGCACGATTCCGCGAATTGCC-GAA-C--ACATCGCCTTCGTTTTAAAGAATT
66 CCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAAATCGAACATCGCCTTCGTTTTAAAGAATT
7638209 T
131 T
7638210 TTA
1 TTA
7638213 AATGAATAAT
Statistics
Matches: 238, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
127 28 0.12
129 1 0.00
130 1 0.00
131 65 0.27
132 143 0.60
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (131 bp):
TTAGAAAACATGAATGAAATTCTAAAGGGACATTCGATTATCTTGAGCAAACGAGAAATTGCAAC
CCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAAATCGAACATCGCCTTCGTTTTAAAGAATT
T
Found at i:7639171 original size:2 final size:2
Alignment explanation
Indices: 7639164--7639210 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
7639154 TATTATAAAG
*
7639164 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7639206 TA TA T
1 TA TA T
7639211 GAAAGAACAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7639267 original size:10 final size:10
Alignment explanation
Indices: 7639254--7639296 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
7639244 AAATAAATAA
7639254 ATAGATATAT
1 ATAGATATAT
* *
7639264 ATAGTTACAT
1 ATAGATATAT
7639274 ATAGATATAT
1 ATAGATATAT
* *
7639284 ATACATGTAT
1 ATAGATATAT
7639294 ATA
1 ATA
7639297 AATGAAAGTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (10 bp):
ATAGATATAT
Found at i:7650181 original size:21 final size:21
Alignment explanation
Indices: 7650138--7650182 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
7650128 AAAACCTGTA
* *
7650138 AAATTATTAATAATTTCATTT
1 AAATTATTAATAAATTAATTT
7650159 AAATTA-TAATAAATTAATATT
1 AAATTATTAATAAATTAAT-TT
7650180 AAA
1 AAA
7650183 ACTATAATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
AAATTATTAATAAATTAATTT
Found at i:7667698 original size:26 final size:27
Alignment explanation
Indices: 7667648--7667699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
7667638 CATATTCAGG
7667648 CGAAATCAGAGATAAGATTACCACAGC
1 CGAAATCAGAGATAAGATTACCACAGC
*
7667675 CGAAATCATAGAT-AGATTACCACAG
1 CGAAATCAGAGATAAGATTACCACAG
7667700 GTGGGAACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.17
Consensus pattern (27 bp):
CGAAATCAGAGATAAGATTACCACAGC
Found at i:7670008 original size:15 final size:16
Alignment explanation
Indices: 7669990--7670019 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7669980 TGACGTTAAT
7669990 ATTTAA-CAAAATAAC
1 ATTTAATCAAAATAAC
7670005 ATTTAATCAAAATAA
1 ATTTAATCAAAATAA
7670020 TTACGGACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTTAATCAAAATAAC
Found at i:7670225 original size:26 final size:27
Alignment explanation
Indices: 7670185--7670245 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 27
7670175 ACATATAAAT
*
7670185 AATTATATTTATTTAA-TATAAAATTA
1 AATTAAATTTATTTAATTATAAAATTA
* **
7670211 AATTAAATTTTTTTAATTTATATGATTA
1 AATTAAATTTATTTAA-TTATAAAATTA
7670239 AATTAAA
1 AATTAAA
7670246 ATTAAAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.48
28 15 0.52
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (27 bp):
AATTAAATTTATTTAATTATAAAATTA
Found at i:7670230 original size:35 final size:34
Alignment explanation
Indices: 7670191--7670256 Score: 80
Period size: 34 Copynumber: 1.9 Consensus size: 34
7670181 AAATAATTAT
* *
7670191 ATTTATTTAATATAAAATT-AAATTAAATTTTTTTA
1 ATTTATATAAT-T-AAATTAAAATTAAAATTTTTTA
*
7670226 ATTTATATGATTAAATTAAAATTAAAATTTT
1 ATTTATATAATTAAATTAAAATTAAAATTTT
7670257 AAATATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 5 0.19
34 13 0.48
35 9 0.33
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (34 bp):
ATTTATATAATTAAATTAAAATTAAAATTTTTTA
Found at i:7670266 original size:33 final size:31
Alignment explanation
Indices: 7670205--7670273 Score: 77
Period size: 33 Copynumber: 2.2 Consensus size: 31
7670195 ATTTAATATA
* * *
7670205 AAATTAAATTAAATTTTTTTAATTTATATGATT
1 AAATTAAATTAAATATTTTAAATATATAT--TT
7670238 AAATTAAAATTAAA-ATTTTAAATATATATTT
1 AAATT-AAATTAAATATTTTAAATATATATTT
7670269 AAATT
1 AAATT
7670274 GTGTTCAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 7 0.22
33 17 0.53
34 8 0.25
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (31 bp):
AAATTAAATTAAATATTTTAAATATATATTT
Found at i:7673867 original size:14 final size:16
Alignment explanation
Indices: 7673838--7673871 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
7673828 TGTTTTTATC
7673838 AAAATAAAATATTTAA
1 AAAATAAAATATTTAA
7673854 AAAAT-AAATA-TTAA
1 AAAATAAAATATTTAA
7673868 AAAA
1 AAAA
7673872 CACATTCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
15 5 0.28
16 5 0.28
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATAAAATATTTAA
Found at i:7678827 original size:21 final size:21
Alignment explanation
Indices: 7678801--7678840 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7678791 TTGGGTCATC
7678801 TTCTTCTTCCTCTTGTTCTGG
1 TTCTTCTTCCTCTTGTTCTGG
* *
7678822 TTCTTCTTCTTGTTGTTCT
1 TTCTTCTTCCTCTTGTTCT
7678841 TCTTCAGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.00, C:0.25, G:0.12, T:0.62
Consensus pattern (21 bp):
TTCTTCTTCCTCTTGTTCTGG
Found at i:7680730 original size:14 final size:14
Alignment explanation
Indices: 7680711--7680741 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7680701 TTTGCTCTAC
*
7680711 TACTTATTCCGCTT
1 TACTTATTCCACTT
7680725 TACTTATTCCACTT
1 TACTTATTCCACTT
7680739 TAC
1 TAC
7680742 AGTAGATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.29, G:0.03, T:0.48
Consensus pattern (14 bp):
TACTTATTCCACTT
Found at i:7703206 original size:10 final size:9
Alignment explanation
Indices: 7703145--7703215 Score: 54
Period size: 10 Copynumber: 7.6 Consensus size: 9
7703135 TTATCTATAG
7703145 TTTTTAATA
1 TTTTTAATA
*
7703154 -TTTTATTA
1 TTTTTAATA
*
7703162 TTTTTAAAA
1 TTTTTAATA
**
7703171 TTGTGAAATGA
1 TT-TTTAAT-A
*
7703182 TTTTGAATA
1 TTTTTAATA
7703191 TATTTTAATAA
1 T-TTTTAAT-A
7703202 TTTTTAATA
1 TTTTTAATA
7703211 TTTTT
1 TTTTT
7703216 TGTCAAATTC
Statistics
Matches: 48, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
8 7 0.15
9 16 0.33
10 20 0.42
11 5 0.10
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.61
Consensus pattern (9 bp):
TTTTTAATA
Found at i:7703743 original size:19 final size:19
Alignment explanation
Indices: 7703719--7703774 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 19
7703709 TCTACGTAAC
7703719 ATTAAATATTTTTTAAATA
1 ATTAAATATTTTTTAAATA
*
7703738 ATTAAATCA-TTTTTACATA
1 ATTAAAT-ATTTTTTAAATA
7703757 AGTTTAAAATATTTTTTA
1 A--TT-AAATATTTTTTA
7703775 TTGATATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 17 0.55
20 1 0.03
21 3 0.10
22 10 0.32
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.52
Consensus pattern (19 bp):
ATTAAATATTTTTTAAATA
Found at i:7705350 original size:25 final size:25
Alignment explanation
Indices: 7705316--7705365 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7705306 TATTTTTATT
7705316 TGTTGATTCTATTTGATTAATAAAA
1 TGTTGATTCTATTTGATTAATAAAA
7705341 TGTTGATTCTATTTGATTAATAAAA
1 TGTTGATTCTATTTGATTAATAAAA
7705366 GTTTGTATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.12, T:0.48
Consensus pattern (25 bp):
TGTTGATTCTATTTGATTAATAAAA
Found at i:7707425 original size:31 final size:31
Alignment explanation
Indices: 7707388--7707448 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
7707378 TTGGTTACTA
7707388 AACTATTTAAAAATT-TTCATTTAAGTCATTG
1 AACTATTTAAAAATTCTT-ATTTAAGTCATTG
*
7707419 AACTATTTAAAAGTTCTTATTTAAGTCATT
1 AACTATTTAAAAATTCTTATTTAAGTCATT
7707449 AGGTTGTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 26 0.93
32 2 0.07
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.46
Consensus pattern (31 bp):
AACTATTTAAAAATTCTTATTTAAGTCATTG
Found at i:7709888 original size:12 final size:12
Alignment explanation
Indices: 7709871--7709896 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7709861 ATCAGATTAA
7709871 ATTATAATTTTT
1 ATTATAATTTTT
7709883 ATTATAATTTTT
1 ATTATAATTTTT
7709895 AT
1 AT
7709897 GATAGTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
ATTATAATTTTT
Found at i:7716788 original size:32 final size:32
Alignment explanation
Indices: 7716750--7716813 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
7716740 ATATATAATC
7716750 GATGGAAGTAATAAAATATATATAATAAAATT
1 GATGGAAGTAATAAAATATATATAATAAAATT
7716782 GATGGAAGTAATAAAATATATATAATAAAATT
1 GATGGAAGTAATAAAATATATATAATAAAATT
7716814 AAATATAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.31
Consensus pattern (32 bp):
GATGGAAGTAATAAAATATATATAATAAAATT
Found at i:7716795 original size:18 final size:15
Alignment explanation
Indices: 7716755--7716861 Score: 66
Period size: 14 Copynumber: 6.9 Consensus size: 15
7716745 TAATCGATGG
7716755 AAGTAATAAAA-TAT
1 AAGTAATAAAATTAT
7716769 ATA-TAATAAAATTGAT
1 A-AGTAATAAAATT-AT
7716785 GGAAGTAATAAAA-TAT
1 --AAGTAATAAAATTAT
7716801 ATA-TAATAAAATTA-
1 A-AGTAATAAAATTAT
*
7716815 AATATAATAAAATTGAT
1 AA-GTAATAAAATT-AT
7716832 GGAAGTAATAAAA-TAT
1 --AAGTAATAAAATTAT
7716848 ATA-TAATAAAATTA
1 A-AGTAATAAAATTA
7716862 AAATGTGTAA
Statistics
Matches: 76, Mismatches: 1, Indels: 31
0.70 0.01 0.29
Matches are distributed among these distances:
13 1 0.01
14 28 0.37
15 18 0.24
16 7 0.09
17 3 0.04
18 17 0.22
19 2 0.03
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (15 bp):
AAGTAATAAAATTAT
Found at i:7716873 original size:47 final size:47
Alignment explanation
Indices: 7716758--7716863 Score: 196
Period size: 47 Copynumber: 2.3 Consensus size: 47
7716748 TCGATGGAAG
*
7716758 TAATAAAA-TATATATAATAAAATTGATGGAAGTAATAAAATATATA
1 TAATAAAATTAAATATAATAAAATTGATGGAAGTAATAAAATATATA
7716804 TAATAAAATTAAATATAATAAAATTGATGGAAGTAATAAAATATATA
1 TAATAAAATTAAATATAATAAAATTGATGGAAGTAATAAAATATATA
7716851 TAATAAAATTAAA
1 TAATAAAATTAAA
7716864 ATGTGTAAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
46 8 0.14
47 50 0.86
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (47 bp):
TAATAAAATTAAATATAATAAAATTGATGGAAGTAATAAAATATATA
Found at i:7716882 original size:19 final size:19
Alignment explanation
Indices: 7716858--7716940 Score: 73
Period size: 19 Copynumber: 4.4 Consensus size: 19
7716848 ATATAATAAA
7716858 ATTAAAATGTGTAAAAAAT
1 ATTAAAATGTGTAAAAAAT
* *
7716877 ATTAAAATAATG-AAAGTAAT
1 ATTAAAAT-GTGTAAA-AAAT
* * * *
7716897 A-GAATATGTATAATAAA-
1 ATTAAAATGTGTAAAAAAT
7716914 ATTAAAATGTGTAAAAAAT
1 ATTAAAATGTGTAAAAAAT
7716933 ATTAAAAT
1 ATTAAAAT
7716941 AAAGTCAGCT
Statistics
Matches: 47, Mismatches: 12, Indels: 10
0.68 0.17 0.14
Matches are distributed among these distances:
17 1 0.02
18 15 0.32
19 25 0.53
20 6 0.13
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.31
Consensus pattern (19 bp):
ATTAAAATGTGTAAAAAAT
Found at i:7716903 original size:56 final size:56
Alignment explanation
Indices: 7716834--7716942 Score: 200
Period size: 56 Copynumber: 1.9 Consensus size: 56
7716824 AAATTGATGG
7716834 AAGTAATAAAATATATATAATAAAATTAAAATGTGTAAAAAATATTAAAATAATGA
1 AAGTAATAAAATATATATAATAAAATTAAAATGTGTAAAAAATATTAAAATAATGA
* *
7716890 AAGTAATAGAATATGTATAATAAAATTAAAATGTGTAAAAAATATTAAAATAA
1 AAGTAATAAAATATATATAATAAAATTAAAATGTGTAAAAAATATTAAAATAA
7716943 AGTCAGCTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.30
Consensus pattern (56 bp):
AAGTAATAAAATATATATAATAAAATTAAAATGTGTAAAAAATATTAAAATAATGA
Found at i:7725945 original size:18 final size:18
Alignment explanation
Indices: 7725922--7725957 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7725912 AATTGATGCT
7725922 GGCTTGTGTAAACAAAAG
1 GGCTTGTGTAAACAAAAG
7725940 GGCTTGTGTAAACAAAAG
1 GGCTTGTGTAAACAAAAG
7725958 AAATAAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.22
Consensus pattern (18 bp):
GGCTTGTGTAAACAAAAG
Found at i:7746419 original size:17 final size:16
Alignment explanation
Indices: 7746386--7746420 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
7746376 AAATTATTGG
*
7746386 TTTTGCATTTTTTTTA
1 TTTTGCATTTATTTTA
7746402 TTTTGCATTTAATTTTA
1 TTTTGCATTT-ATTTTA
7746419 TT
1 TT
7746421 CATTGCAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (16 bp):
TTTTGCATTTATTTTA
Found at i:7761877 original size:5 final size:5
Alignment explanation
Indices: 7761869--7762242 Score: 62
Period size: 5 Copynumber: 70.4 Consensus size: 5
7761859 CCCTTTTTTT
* * *
7761869 TTTCA TTTCAA TTTATA TTTTA ATTTCA TTTTA TTT-A TATTCA TTTCACA
1 TTTCA TTTC-A TTT-CA TTTCA -TTTCA TTTCA TTTCA T-TTCA TTT--CA
* * * *
7761919 TTTCA TTTCA TTACA TTTCA TTTAAA TTT-A TTT-T TTTCA TTTAAA TTT--
1 TTTCA TTTCA TTTCA TTTCA TTT-CA TTTCA TTTCA TTTCA TTT-CA TTTCA
* ** *
7761967 TTT-A TTTAAA TTT-A TTTTT TTTCA TATTCA TTT-- TTTCTG TTTCCA
1 TTTCA TTT-CA TTTCA TTTCA TTTCA T-TTCA TTTCA TTTC-A TTT-CA
* * * *
7762012 TTT-T TTTCA TTTCAA TTTATA TTTTAA TTTTA TTTCA TATTCA TTTCAA
1 TTTCA TTTCA TTTC-A TTT-CA -TTTCA TTTCA TTTCA T-TTCA TTTC-A
* *
7762061 TGTTAA TTTCA TTTCA TATTCA TTACAA CTTTCA TTTCACA TTTCA TTT--
1 T-TTCA TTTCA TTTCA T-TTCA TTTC-A -TTTCA TTT--CA TTTCA TTTCA
** *
7762110 TTTGTT TTTCA TTTTCA TTT-- TTTCCCA TTTCAA TTT-T TTTCA TATTCA
1 TTT-CA TTTCA -TTTCA TTTCA TTT--CA TTTC-A TTTCA TTTCA T-TTCA
** * *
7762158 TTTTT TTCTCA TTTCAA TTT-A TTT-A TTTTTCA TTTCAA TTTATA TTTTAA
1 TTTCA TT-TCA TTTC-A TTTCA TTTCA --TTTCA TTTC-A TTT-CA -TTTCA
7762208 TTTCA TTTCAAA TTTCA TTTCA TTTCA TATTCA TT
1 TTTCA TTTC--A TTTCA TTTCA TTTCA T-TTCA TT
7762243 CCAATTTTTT
Statistics
Matches: 282, Mismatches: 34, Indels: 106
0.67 0.08 0.25
Matches are distributed among these distances:
3 12 0.04
4 27 0.10
5 115 0.41
6 97 0.34
7 31 0.11
ACGTcount: A:0.24, C:0.13, G:0.01, T:0.62
Consensus pattern (5 bp):
TTTCA
Found at i:7761969 original size:14 final size:13
Alignment explanation
Indices: 7761950--7761979 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
7761940 TTAAATTTAT
7761950 TTTTTTCATTTAAA
1 TTTTTT-ATTTAAA
7761964 TTTTTTATTTAAA
1 TTTTTTATTTAAA
7761977 TTT
1 TTT
7761980 ATTTTTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTTATTTAAA
Found at i:7761979 original size:19 final size:19
Alignment explanation
Indices: 7761938--7761980 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7761928 ATTACATTTC
**
7761938 ATTTAAATTTATTTTTTTC
1 ATTTAAATTTATTTTTTAA
7761957 ATTTAAATTT-TTTATTTAA
1 ATTTAAATTTATTT-TTTAA
7761976 ATTTA
1 ATTTA
7761981 TTTTTTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (19 bp):
ATTTAAATTTATTTTTTAA
Found at i:7761986 original size:19 final size:19
Alignment explanation
Indices: 7761938--7761988 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
7761928 ATTACATTTC
*
7761938 ATTTAAATTTATTTTTTTC
1 ATTTAAATTTATTTTTTTT
7761957 ATTT-AA---A--TTTTTT
1 ATTTAAATTTATTTTTTTT
7761970 ATTTAAATTTATTTTTTTT
1 ATTTAAATTTATTTTTTTT
7761989 CATATTCATT
Statistics
Matches: 25, Mismatches: 1, Indels: 12
0.66 0.03 0.32
Matches are distributed among these distances:
13 9 0.36
14 2 0.08
15 1 0.04
17 1 0.04
18 2 0.08
19 10 0.40
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
ATTTAAATTTATTTTTTTT
Found at i:7762057 original size:11 final size:10
Alignment explanation
Indices: 7762038--7762242 Score: 55
Period size: 11 Copynumber: 18.8 Consensus size: 10
7762028 TTATATTTTA
*
7762038 ATTTTATTTC
1 ATTTCATTTC
7762048 ATATTCATTTC
1 AT-TTCATTTC
*
7762059 AATGTTAATTTC
1 -AT-TTCATTTC
7762071 ATTTCATATTC
1 ATTTCAT-TTC
*
7762082 ATTACAACTTTC
1 ATTTC-A-TTTC
7762094 ATTTCACATTTC
1 ATTT--CATTTC
*
7762106 ATTT--TTTGT
1 ATTTCATTT-C
*
7762115 TTTTCATTTTC
1 ATTTCA-TTTC
7762126 ATTT--TTTCCC
1 ATTTCATTT--C
7762136 ATTTCAATTT-
1 ATTTC-ATTTC
*
7762146 TTTTCATATTC
1 ATTTCAT-TTC
**
7762157 ATTTTTTTCTC
1 ATTTCATT-TC
7762168 ATTTCAATTT-
1 ATTTC-ATTTC
7762178 ATTT-ATTTTTC
1 ATTTCA--TTTC
*
7762189 ATTTCAATTTAT
1 ATTTC-ATTT-C
*
7762201 ATTTTAATTTC
1 A-TTTCATTTC
7762212 ATTTCAAATTTC
1 ATTTC--ATTTC
7762224 ATTTCATTTC
1 ATTTCATTTC
7762234 ATATTCATT
1 AT-TTCATT
7762243 CCAATTTTTT
Statistics
Matches: 145, Mismatches: 20, Indels: 59
0.65 0.09 0.26
Matches are distributed among these distances:
8 7 0.05
9 5 0.03
10 35 0.24
11 44 0.30
12 44 0.30
13 9 0.06
14 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.01, T:0.60
Consensus pattern (10 bp):
ATTTCATTTC
Found at i:7762057 original size:28 final size:28
Alignment explanation
Indices: 7762011--7762084 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 28
7762001 TTCTGTTTCC
*
7762011 ATTTT-TTTCAT-TTCAATTT-ATATTTTA
1 ATTTTATTTCATATTC-ATTTCA-ATGTTA
7762038 ATTTTATTTCATATTCATTTCAATGTTA
1 ATTTTATTTCATATTCATTTCAATGTTA
*
7762066 ATTTCATTTCATATTCATT
1 ATTTTATTTCATATTCATT
7762085 ACAACTTTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
27 5 0.12
28 33 0.79
29 4 0.10
ACGTcount: A:0.27, C:0.11, G:0.01, T:0.61
Consensus pattern (28 bp):
ATTTTATTTCATATTCATTTCAATGTTA
Found at i:7762083 original size:34 final size:34
Alignment explanation
Indices: 7762017--7762083 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
7762007 TTCCATTTTT
*
7762017 TTCATTTCAATTTATATTTTAATTTTATTTCATA
1 TTCATTTCAATTTATATTTTAATTTCATTTCATA
*
7762051 TTCATTTCAATGTTA-A-TTTCATTTCATATTCAT
1 TTCATTTCAAT-TTATATTTTAATTTCAT-TTCAT
7762084 TACAACTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 9 0.31
34 17 0.59
35 3 0.10
ACGTcount: A:0.28, C:0.12, G:0.01, T:0.58
Consensus pattern (34 bp):
TTCATTTCAATTTATATTTTAATTTCATTTCATA
Found at i:7762105 original size:12 final size:11
Alignment explanation
Indices: 7762043--7762109 Score: 50
Period size: 12 Copynumber: 5.8 Consensus size: 11
7762033 TTTTAATTTT
7762043 ATTTCATATTC-
1 ATTTCAT-TTCA
7762054 ATTTCAATGTT-A
1 ATTTC-AT-TTCA
7762066 ATTTCATTTC-
1 ATTTCATTTCA
*
7762076 ATATTCATTACA
1 AT-TTCATTTCA
7762088 ACTTTCATTTCA
1 A-TTTCATTTCA
7762100 CATTTCATTT
1 -ATTTCATTT
7762110 TTTGTTTTTC
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
10 4 0.09
11 14 0.30
12 26 0.57
13 2 0.04
ACGTcount: A:0.28, C:0.18, G:0.01, T:0.52
Consensus pattern (11 bp):
ATTTCATTTCA
Found at i:7762145 original size:16 final size:16
Alignment explanation
Indices: 7762122--7762177 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
7762112 TGTTTTTCAT
*
7762122 TTTC-ATTTTTTCCCA
1 TTTCAATTTTTTCTCA
7762137 TTTCAATTTTTT-TCA
1 TTTCAATTTTTTCTCA
*
7762152 TATTCATTTTTTTCTCA
1 T-TTCAATTTTTTCTCA
7762169 TTTCAATTT
1 TTTCAATTT
7762178 ATTTATTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
15 7 0.20
16 24 0.69
17 4 0.11
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTCAATTTTTTCTCA
Found at i:7762190 original size:32 final size:32
Alignment explanation
Indices: 7762116--7762192 Score: 104
Period size: 32 Copynumber: 2.4 Consensus size: 32
7762106 ATTTTTTGTT
*
7762116 TTTCATTTTCA-TTTTTTCCCATTTCAATTTT
1 TTTCATTTTCATTTTTTTCCCATTTCAATTTA
* *
7762147 TTTCATATTCATTTTTTTCTCATTTCAATTTA
1 TTTCATTTTCATTTTTTTCCCATTTCAATTTA
7762179 TTT-ATTTTTCATTT
1 TTTCA-TTTTCATTT
7762193 CAATTTATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
31 11 0.28
32 29 0.73
ACGTcount: A:0.18, C:0.16, G:0.00, T:0.66
Consensus pattern (32 bp):
TTTCATTTTCATTTTTTTCCCATTTCAATTTA
Found at i:7762203 original size:23 final size:20
Alignment explanation
Indices: 7762147--7762218 Score: 81
Period size: 21 Copynumber: 3.3 Consensus size: 20
7762137 TTTCAATTTT
*
7762147 TTTCATATTCATTTTTTTCTCA
1 TTTCA-ATTTATTTTTTT-TCA
7762169 TTTCAATTTATTTATTTTTCA
1 TTTCAATTTATTT-TTTTTCA
7762190 TTTCAATTTATATTTTAATTTCA
1 TTTCAATTTAT-TTTT--TTTCA
7762213 TTTCAA
1 TTTCAA
7762219 ATTTCATTTC
Statistics
Matches: 45, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
21 23 0.51
22 11 0.24
23 11 0.24
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTCAATTTATTTTTTTTCA
Found at i:7762349 original size:26 final size:25
Alignment explanation
Indices: 7762294--7762348 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
7762284 AATTTTTCTC
* * *
7762294 ATTTTAAATTTCATTTTATTTCAAA
1 ATTTTAAAATTCATTTAAATTCAAA
7762319 ATTTTAAAATTCATTTAAATTCAAA
1 ATTTTAAAATTCATTTAAATTCAAA
*
7762344 TTTTT
1 ATTTT
7762349 TCTGATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (25 bp):
ATTTTAAAATTCATTTAAATTCAAA
Found at i:7764262 original size:28 final size:28
Alignment explanation
Indices: 7764205--7764267 Score: 65
Period size: 28 Copynumber: 2.2 Consensus size: 28
7764195 ATTATATATC
* ** *
7764205 CATTTCAATTTCTATTCAATTTAAATTT
1 CATTTCAACTTCTATTCAATAAAAAATT
7764233 CATTTCAACTTC-ATTTCAATAAAAAATT
1 CATTTCAACTTCTA-TTCAATAAAAAATT
7764261 CAATTTC
1 C-ATTTC
7764268 TTTTTTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 1 0.03
28 23 0.79
29 5 0.17
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46
Consensus pattern (28 bp):
CATTTCAACTTCTATTCAATAAAAAATT
Found at i:7764471 original size:5 final size:5
Alignment explanation
Indices: 7764429--7764453 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7764419 TTCATTCCCA
7764429 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
7764454 CATTCCAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:7764481 original size:112 final size:108
Alignment explanation
Indices: 7764222--7764534 Score: 502
Period size: 112 Copynumber: 2.8 Consensus size: 108
7764212 ATTTCTATTC
* *
7764222 AATTTAAATTTCATTTCAACTTCATTTCAATAAAAAATTCAATTTCTTTTTTAAATTTTACCCAT
1 AATTT-AATTTCATTCCAACTTCATTTCAATAAAAAATTCAATTTCTTTTTTAAATTTTACTCA-
7764287 ATATCTTTTTTAAATATAATTTCATTTCATTCCCAAATTTAATTT
64 ATATCTTTTTTAAATATAATTTCATTTCATTCCCAAATTTAATTT
*
7764332 AATTTAATTTCATTCCAACTTCATTTAAATAAAAAATTCAATTTCTTTTTTAAATTTTACTC-AT
1 AATTTAATTTCATTCCAACTTCATTTCAATAAAAAATTCAATTTCTTTTTTAAATTTTACTCAAT
7764396 ATCTTTTTTAAATATAATTTCATTTCATTCCCAAATTTAATTTAATTT
66 ATCTTTTTTAAATATAATTTCATTTCATTCCC--A---AATTTAATTT
*
7764444 AATTTAATTTCATTCCAACTTCATTTCAATAAAAAATTTAATTTCTTTTTTAAATTTTACTCATA
1 AATTTAATTTCATTCCAACTTCATTTCAATAAAAAATTCAATTTCTTTTTTAAATTTTACTCA-A
*
7764509 TATCTTTTTTAAATATAATTCCATTT
65 TATCTTTTTTAAATATAATTTCATTT
7764535 TAATTTCATT
Statistics
Matches: 190, Mismatches: 6, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
107 34 0.18
109 55 0.29
110 5 0.03
112 70 0.37
114 26 0.14
ACGTcount: A:0.35, C:0.14, G:0.00, T:0.51
Consensus pattern (108 bp):
AATTTAATTTCATTCCAACTTCATTTCAATAAAAAATTCAATTTCTTTTTTAAATTTTACTCAAT
ATCTTTTTTAAATATAATTTCATTTCATTCCCAAATTTAATTT
Found at i:7767715 original size:51 final size:51
Alignment explanation
Indices: 7767644--7767811 Score: 228
Period size: 51 Copynumber: 3.2 Consensus size: 51
7767634 CTGATCACAT
*
7767644 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
7767695 TTATCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * *
7767746 TTGTCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTG-----TA--ACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
7767804 TTGTCACT
1 TTATCACT
7767812 GATCAGAAGT
Statistics
Matches: 106, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
51 59 0.56
56 2 0.02
58 45 0.42
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:7767753 original size:58 final size:58
Alignment explanation
Indices: 7767685--7767816 Score: 201
Period size: 58 Copynumber: 2.3 Consensus size: 58
7767675 CTAAAGCTAC
* *
7767685 CACTTATCACTTATCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTGTCACTTATCACTTATAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
* * * *
7767743 CACTTGTCACTTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTAT
1 CACTTGTCACTTATCACTTATAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
*
7767801 CACTTGTCACTGATCA
1 CACTTGTCACTTATCA
7767817 GAAGTACTCA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 66 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (58 bp):
CACTTGTCACTTATCACTTATAACTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
Found at i:7770465 original size:46 final size:46
Alignment explanation
Indices: 7770390--7770575 Score: 239
Period size: 46 Copynumber: 4.0 Consensus size: 46
7770380 TTATCTTTGA
* * * * * * ** *
7770390 CATGATGCCATAGTGTCTTTCAACTATGGTTTTACTCATTTTTTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
***
7770436 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
7770482 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
7770528 CA-GATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATG-TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
7770574 CA
1 CA
7770576 GAGAGCACAC
Statistics
Matches: 125, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 124 0.99
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:7772920 original size:30 final size:31
Alignment explanation
Indices: 7772852--7772910 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
7772842 CATAGTTAAA
** *
7772852 ATATTTACACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAACCCCTCAAATTTTTC
7772883 ATATTTACACT-TTAACCCCTCAAATTTT
1 ATATTTACACTATTAACCCCTCAAATTTT
7772911 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.31, C:0.22, G:0.02, T:0.46
Consensus pattern (31 bp):
ATATTTACACTATTAACCCCTCAAATTTTTC
Found at i:7777794 original size:14 final size:14
Alignment explanation
Indices: 7777777--7777808 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7777767 CTGAAATATG
7777777 AAATCTTAAAAAAA
1 AAATCTTAAAAAAA
*
7777791 AAATCTTAAAAATA
1 AAATCTTAAAAAAA
7777805 AAAT
1 AAAT
7777809 TATGATGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (14 bp):
AAATCTTAAAAAAA
Found at i:7780594 original size:29 final size:27
Alignment explanation
Indices: 7780512--7780595 Score: 64
Period size: 29 Copynumber: 3.0 Consensus size: 27
7780502 AAATGTCACA
7780512 AGAAAATTAAGTATTTAAA-ATAAAAAT
1 AGAAAATTAA-TATTTAAATATAAAAAT
* * * *
7780539 ATTAAATTTTAAT-TTTAATTTTAAAAAAT
1 A-GAAA-ATTAATATTTAAATAT-AAAAAT
7780568 AGAAAATATAATATTTAAATATCAAAAA
1 AGAAAAT-TAATATTTAAATAT-AAAAA
7780596 ATACTTTTGA
Statistics
Matches: 42, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
27 7 0.17
28 12 0.29
29 23 0.55
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.37
Consensus pattern (27 bp):
AGAAAATTAATATTTAAATATAAAAAT
Found at i:7780909 original size:22 final size:21
Alignment explanation
Indices: 7780852--7780910 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
7780842 TAAATACTTT
**
7780852 TTTTTAAAATTTATAATTATA
1 TTTTTAAAATTTATAAAAATA
*
7780873 TGTTTTAGAATTTTATAAAAAATA
1 T-TTTTA-AAATTTAT-AAAAATA
*
7780897 TTTTTAAACTTTAT
1 TTTTTAAAATTTAT
7780911 TTTTTTTACA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.39
23 12 0.39
24 6 0.19
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (21 bp):
TTTTTAAAATTTATAAAAATA
Found at i:7781951 original size:19 final size:17
Alignment explanation
Indices: 7781927--7781961 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
7781917 ATTATTTGGA
7781927 TATTGTATAATTCTTGTTT
1 TATTGT-TAATT-TTGTTT
7781946 TATTGTTAATTTTGTT
1 TATTGTTAATTTTGTT
7781962 ACTATTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.20, C:0.03, G:0.11, T:0.66
Consensus pattern (17 bp):
TATTGTTAATTTTGTTT
Found at i:7781967 original size:18 final size:19
Alignment explanation
Indices: 7781927--7781967 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
7781917 ATTATTTGGA
*
7781927 TATTGTATAATTCTTGTTT
1 TATTGTATAATTCTTGTTC
7781946 TATTGT-TAATT-TTGTTAC
1 TATTGTATAATTCTTGTT-C
7781964 TATT
1 TATT
7781968 TTAGAGGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 5 0.25
18 9 0.45
19 6 0.30
ACGTcount: A:0.22, C:0.05, G:0.10, T:0.63
Consensus pattern (19 bp):
TATTGTATAATTCTTGTTC
Found at i:7782420 original size:2 final size:2
Alignment explanation
Indices: 7782409--7782440 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7782399 ATTATTAAAT
7782409 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7782441 GATAAAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7783029 original size:9 final size:9
Alignment explanation
Indices: 7783017--7783048 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
7783007 CAGTTAAGTT
7783017 ATTAATTTA
1 ATTAATTTA
*
7783026 ATTAGTTTA
1 ATTAATTTA
7783035 ATTAATTTA
1 ATTAATTTA
7783044 ATTAA
1 ATTAA
7783049 AAATTATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (9 bp):
ATTAATTTA
Found at i:7788573 original size:46 final size:46
Alignment explanation
Indices: 7788392--7788574 Score: 226
Period size: 46 Copynumber: 4.0 Consensus size: 46
7788382 TTTGACATGA
* * *
7788392 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATG-T
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCA-GAT
* * * *
7788438 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATTAGGT
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGAT
* * *
7788484 TGCCATGGTATCTTTCACCCATGGTCTTACACATTTCATATCAGAT
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGAT
* *
7788530 TGCCAAAGTATCTTTCAACCATGGTCTTACGCATTTCATATCAGA
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGA
7788575 GAGCACACTC
Statistics
Matches: 120, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
45 5 0.04
46 115 0.96
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGAT
Found at i:7797513 original size:35 final size:35
Alignment explanation
Indices: 7797486--7797651 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
7797476 CATGGCAAAG
*
7797486 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
7797521 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
7797556 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
7797596 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
7797631 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
7797652 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:7797605 original size:75 final size:75
Alignment explanation
Indices: 7797486--7797656 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
7797476 CATGGCAAAG
** *
7797486 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
7797545 CCATACTGAGC
65 CCATACCGAGC
7797556 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
7797621 CATACCGAGT
66 CATACCGAGC
**
7797631 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
7797657 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:7805087 original size:35 final size:36
Alignment explanation
Indices: 7804987--7805115 Score: 147
Period size: 35 Copynumber: 3.5 Consensus size: 36
7804977 GGCAAAGTGT
* **
7804987 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATTATCCCATACTGAGTTAA
7805022 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATTATC----CCATACTGAGTTAA
* *
7805062 GAAATGTAGGTATGGCATT-TCCCATACCGAGTTGAA
1 GAAATGTAGGTATGGTATTATCCCATACTGAGTT-AA
7805098 -AAATGTAGGTATGGTATT
1 GAAATGTAGGTATGGTATT
7805116 TCAATGAGGA
Statistics
Matches: 82, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
35 49 0.60
36 2 0.02
39 2 0.02
40 29 0.35
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.33
Consensus pattern (36 bp):
GAAATGTAGGTATGGTATTATCCCATACTGAGTTAA
Found at i:7807228 original size:46 final size:46
Alignment explanation
Indices: 7807088--7807312 Score: 233
Period size: 46 Copynumber: 4.8 Consensus size: 46
7807078 TCGAAATTGA
* * * *
7807088 AGCCGACGCTATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCGT
1 AGCCGATGC-ATGTCCCAAACAT-GTCTTACACTAGCT-T-ACATCT-CGT
* *
7807139 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAAC--ACATCTCGT
1 AGCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTTACATCTCGT
* * *
7807184 AACCGATACATGTCCCAAACATGTCTTACACTGGCTTACATCTCGT
1 AGCCGATGCATGTCCCAAACATGTCTTACACTAGCTTACATCTCGT
* * *
7807230 AGCCGATGCATGTTCCAGACATGTCTTACACTGGCTTACATCTCG-
1 AGCCGATGCATGTCCCAAACATGTCTTACACTAGCTTACATCTCGT
*
7807275 AGGCCGATGCATGTCCTAAACATGTCTTACACTAGCTT
1 A-GCCGATGCATGTCCCAAACATGTCTTACACTAGCTT
7807313 TCGTGTAATA
Statistics
Matches: 152, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
44 11 0.07
45 17 0.11
46 92 0.61
50 31 0.20
51 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
AGCCGATGCATGTCCCAAACATGTCTTACACTAGCTTACATCTCGT
Found at i:7807272 original size:92 final size:93
Alignment explanation
Indices: 7807042--7807312 Score: 275
Period size: 92 Copynumber: 2.9 Consensus size: 93
7807032 TCCATCAAGT
** * **
7807042 CGATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATTGA-AGCCGACGCTATGTCCTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAAC-A-C-ATCTCGAGA-CCGATAC-ATGTCCTA
*
7807106 GACATGGTCTTACACTAGCTCTCACATATCCGTGC
61 AACAT-GTCTTACACTAGCT-TCACATATCCGTGC
*
7807141 CGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCGTA-ACCGATACATGTCCCAAACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCG-AGACCGATACATGTCCTAAACA
* *
7807205 TGTCTTACACTGGCTT-ACATCT-CGTAGC
65 TGTCTTACACTAGCTTCACATATCCGT-GC
* ** * *
7807233 CGATG-CATGTTCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCTAAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAAC--ACATCTCGAGACCGATACATGTCCTAAAC
7807296 ATGTCTTACACTAGCTT
64 ATGTCTTACACTAGCTT
7807313 TCGTGTAATA
Statistics
Matches: 151, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
90 11 0.07
91 17 0.11
92 52 0.34
93 1 0.01
94 13 0.09
95 11 0.07
96 8 0.05
97 3 0.02
98 1 0.01
99 34 0.23
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCGAGACCGATACATGTCCTAAACAT
GTCTTACACTAGCTTCACATATCCGTGC
Found at i:7807810 original size:11 final size:11
Alignment explanation
Indices: 7807796--7807848 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
7807786 AGATAAATAT
7807796 TATTTTATTAA
1 TATTTTATTAA
*
7807807 TATTTTAATAA
1 TATTTTATTAA
* * *
7807818 GATATT-TTAT
1 TATTTTATTAA
*
7807828 TATTTTATTAT
1 TATTTTATTAA
7807839 TATTTTATTA
1 TATTTTATTA
7807849 GTATATAAAG
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
10 6 0.18
11 28 0.82
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:7809539 original size:46 final size:46
Alignment explanation
Indices: 7809487--7809699 Score: 257
Period size: 46 Copynumber: 4.6 Consensus size: 46
7809477 GCTCTCTGAA
*
7809487 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
7809533 ATGAAATGTGTAAGAGCATGGTTGAAAGATACCATGGCAA-AGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA-TGAC
* ** * * * *
7809579 ATGAAAAGAATAAGACCATGGTTGAGAGATACTATAGCAACATGGC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * ** * * *
7809625 GGGAAGTGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
7809671 ATGAAATGTGTAAGACCATGGTTGAAAGA
1 ATGAAATGTGTAAGACCATGGTTGAAAGA
7809700 GACAATGGTT
Statistics
Matches: 139, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
45 1 0.01
46 137 0.99
47 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.27, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:7809707 original size:16 final size:16
Alignment explanation
Indices: 7809683--7809715 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7809673 GAAATGTGTA
*
7809683 AGACCATGGTTGAAAG
1 AGACAATGGTTGAAAG
7809699 AGACAATGGTTGAAAG
1 AGACAATGGTTGAAAG
7809715 A
1 A
7809716 TACCATAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.30, T:0.18
Consensus pattern (16 bp):
AGACAATGGTTGAAAG
Found at i:7809708 original size:62 final size:62
Alignment explanation
Indices: 7809637--7809761 Score: 178
Period size: 62 Copynumber: 2.0 Consensus size: 62
7809627 GAAGTGAATA
* * * * * **
7809637 AGACCATGGTTGAAAGATACCATGGCAGCGTGATATGAAATGTGTAAGACCATGGTTGAAAG
1 AGACAATGGTTGAAAGATACCATAGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAG
*
7809699 AGACAATGGTTGAAAGATACCATAGCAATGTGACATGAAAAGAATAAGACCATGGTTGAAAG
1 AGACAATGGTTGAAAGATACCATAGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAG
7809761 A
1 A
7809762 TACCATGACA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.41, C:0.12, G:0.26, T:0.21
Consensus pattern (62 bp):
AGACAATGGTTGAAAGATACCATAGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAG
Found at i:7809756 original size:46 final size:45
Alignment explanation
Indices: 7809699--7809806 Score: 130
Period size: 46 Copynumber: 2.4 Consensus size: 45
7809689 TGGTTGAAAG
* **
7809699 AGACAATGGTTGAAAGATACCAT-AGCAATGTGACATGAAAA-GAATA
1 AGACCATGGTTGAAAGATACCATGA-CAACATGACA-GAAAATG-ATA
*
7809745 AGACCATGGTTGAAAGATACCATGACAACATGACAGAAAATGGTA
1 AGACCATGGTTGAAAGATACCATGACAACATGACAGAAAATGATA
*
7809790 AGACCATAGTTGAAAGA
1 AGACCATGGTTGAAAGA
7809807 CATTATGGCA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
45 23 0.42
46 31 0.56
47 1 0.02
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.19
Consensus pattern (45 bp):
AGACCATGGTTGAAAGATACCATGACAACATGACAGAAAATGATA
Found at i:7809802 original size:45 final size:46
Alignment explanation
Indices: 7809707--7809806 Score: 125
Period size: 45 Copynumber: 2.2 Consensus size: 46
7809697 AGAGACAATG
** *
7809707 GTTGAAAGATACCATAGCAATGTGACATGAAAAGAATAAGACCATG
1 GTTGAAAGATACCATAGCAACATGACATGAAAAGAATAAGACCATA
*
7809753 GTTGAAAGATACCAT-GACAACATGACA-GAAAATG-GTAAGACCATA
1 GTTGAAAGATACCATAG-CAACATGACATGAAAA-GAATAAGACCATA
7809798 GTTGAAAGA
1 GTTGAAAGA
7809807 CATTATGGCA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
45 24 0.50
46 24 0.50
ACGTcount: A:0.46, C:0.13, G:0.22, T:0.19
Consensus pattern (46 bp):
GTTGAAAGATACCATAGCAACATGACATGAAAAGAATAAGACCATA
Found at i:7814466 original size:18 final size:18
Alignment explanation
Indices: 7814439--7814478 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7814429 TACATCATTC
*
7814439 TATTTGTTTTATT-TTTCA
1 TATTTATTTTATTATTT-A
7814457 TATTTATTTTATTATTTA
1 TATTTATTTTATTATTTA
7814475 TATT
1 TATT
7814479 CCAAGTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (18 bp):
TATTTATTTTATTATTTA
Found at i:7815066 original size:20 final size:21
Alignment explanation
Indices: 7815038--7815077 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
7815028 CCAAATTCAA
*
7815038 AATTCTTTTATAA-AAAAAAC
1 AATTATTTTATAATAAAAAAC
7815058 AATTATTTTATAATAAAAAA
1 AATTATTTTATAATAAAAAA
7815078 GTAGTTTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
AATTATTTTATAATAAAAAAC
Found at i:7827202 original size:3 final size:3
Alignment explanation
Indices: 7827194--7827220 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7827184 CAAACGGTGA
7827194 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
7827221 TTTTGGGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7831459 original size:11 final size:11
Alignment explanation
Indices: 7831425--7831472 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
7831415 GGTGATGTTG
*
7831425 TTTGGTGCTGTT
1 TTTGATGCTG-T
*
7831437 TTTGATGTTGT
1 TTTGATGCTGT
*
7831448 TTTGGTGCTGT
1 TTTGATGCTGT
*
7831459 TTTGATGCTAT
1 TTTGATGCTGT
7831470 TTT
1 TTT
7831473 TTGTGGTGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 22 0.73
12 8 0.27
ACGTcount: A:0.06, C:0.06, G:0.27, T:0.60
Consensus pattern (11 bp):
TTTGATGCTGT
Found at i:7831472 original size:22 final size:23
Alignment explanation
Indices: 7831425--7831472 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
7831415 GGTGATGTTG
* *
7831425 TTTGGTGCTGTTTTTGATGTTGT
1 TTTGGTGCTGTTTTTGATGCTAT
7831448 TTTGGTGCTG-TTTTGATGCTAT
1 TTTGGTGCTGTTTTTGATGCTAT
7831470 TTT
1 TTT
7831473 TTGTGGTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.06, C:0.06, G:0.27, T:0.60
Consensus pattern (23 bp):
TTTGGTGCTGTTTTTGATGCTAT
Found at i:7831473 original size:23 final size:22
Alignment explanation
Indices: 7831402--7831465 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
7831392 TTTTGCAGGT
* *
7831402 TTTTGGTGTTGTTGGTGATGTTG
1 TTTTGGTGCTGTT-TTGATGTTG
7831425 -TTTGGTGCTGTTTTTGATGTTG
1 TTTTGGTGCTG-TTTTGATGTTG
7831447 TTTTGGTGCTGTTTTGATG
1 TTTTGGTGCTGTTTTGATG
7831466 CTATTTTTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
22 25 0.68
23 12 0.32
ACGTcount: A:0.05, C:0.03, G:0.34, T:0.58
Consensus pattern (22 bp):
TTTTGGTGCTGTTTTGATGTTG
Found at i:7831483 original size:34 final size:35
Alignment explanation
Indices: 7831401--7831484 Score: 84
Period size: 34 Copynumber: 2.4 Consensus size: 35
7831391 ATTTTGCAGG
*
7831401 TTTT-TGGTGTTGTTGGTGATGTTGTTTGGTGCTGT
1 TTTTGTGGTGTT-TTGGTGATGTTGTTTGATGCTGT
* * *
7831436 TTTTGATGTTGTTTTGGTGCTG-T-TTTGATGCTATT
1 TTTTG-TGGTGTTTTGGTGATGTTGTTTGATGCT-GT
7831471 TTTTGTGGTGTTTT
1 TTTTGTGGTGTTTT
7831485 ATTGTTCTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
34 16 0.39
35 11 0.27
36 8 0.20
37 6 0.15
ACGTcount: A:0.05, C:0.04, G:0.31, T:0.61
Consensus pattern (35 bp):
TTTTGTGGTGTTTTGGTGATGTTGTTTGATGCTGT
Found at i:7832237 original size:31 final size:31
Alignment explanation
Indices: 7832201--7832281 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 31
7832191 TCAAAAAGCC
7832201 TAATTAATCTTCTGAATTTTTTTTAAAACTT
1 TAATTAATCTTCTGAATTTTTTTTAAAACTT
* ** *
7832232 TAATTAGAAC-TCT-AA-AATTTTTAAAATTT
1 TAATTA-ATCTTCTGAATTTTTTTTAAAACTT
7832261 TAATTAATCTCTTCTGAATTT
1 TAATTAA--TCTTCTGAATTT
7832282 AATGATATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
28 1 0.03
29 17 0.46
30 3 0.08
31 12 0.32
32 4 0.11
ACGTcount: A:0.36, C:0.10, G:0.04, T:0.51
Consensus pattern (31 bp):
TAATTAATCTTCTGAATTTTTTTTAAAACTT
Found at i:7836789 original size:2 final size:2
Alignment explanation
Indices: 7836782--7836811 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7836772 GTATCTAAGT
*
7836782 TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7836812 AAAGATGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7840493 original size:11 final size:11
Alignment explanation
Indices: 7840473--7840506 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
7840463 CCCCCCCCCC
7840473 AAAAAA-AAAA
1 AAAAAAGAAAA
7840483 AAAAAAGAAAA
1 AAAAAAGAAAA
7840494 AAAAAAGAGAAA
1 AAAAAAGA-AAA
7840506 A
1 A
7840507 TACTACATCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 6 0.27
11 12 0.55
12 4 0.18
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:7840495 original size:13 final size:13
Alignment explanation
Indices: 7840473--7840506 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
7840463 CCCCCCCCCC
7840473 AAAA-AAAAAAAA
1 AAAAGAAAAAAAA
7840485 AAAAGAAAAAAAA
1 AAAAGAAAAAAAA
*
7840498 AAGAGAAAA
1 AAAAGAAAA
7840507 TACTACATCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAA
Found at i:7847114 original size:340 final size:340
Alignment explanation
Indices: 7846494--7847513 Score: 2022
Period size: 340 Copynumber: 3.0 Consensus size: 340
7846484 CATGCCCGGT
*
7846494 TATAATCGATGAGTGTTGGATTAGAAATGATATAATGTTTTATTTGGAATATTTATTATGAAATT
1 TATAATCGATGAGTGTTGGATTAAAAATGATATAATGTTTTATTTGGAATATTTATTATGAAATT
7846559 ATGATTATCGTTATAATACAAAAATTGAACTTGTGAGTTTATATGGCTAAATTTTAGTGATTATT
66 ATGATTATCGTTATAATACAAAAATTGAACTTGTGAGTTTATATGGCTAAATTTTAGTGATTATT
*
7846624 TGTTAATTTTATGAATTTTATGATGAGTTATTTCATATGTATTGATGATAAAATCGTGAATAATA
131 TGTTAATTTTATGAATTTTATGATGAGTTATTTCATATGTATTGATGATAAAATCGTGAATAATG
7846689 TAAAAGCATGAAAATTGAATAAATGATCAAATTGAGCATTTCAGTTCAGTGACAAGATGAATTGA
196 TAAAAGCATGAAAATTGAATAAATGATCAAATTGAGCATTTCAGTTCAGTGACAAGATGAATTGA
7846754 AGGAAAAGACCATGGTTGGACCATGGAAACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTG
261 AGGAAAAGACCATGGTTGGACCATGGAAACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTG
7846819 ATCAAGGACAAATGA
326 ATCAAGGACAAATGA
7846834 TATAATCGATGAGTGTTGGATTAAAAATGATATAATGTTTTATTTGGAATATTTATTATGAAATT
1 TATAATCGATGAGTGTTGGATTAAAAATGATATAATGTTTTATTTGGAATATTTATTATGAAATT
7846899 ATGATTATCGTTATAATACAAAAATTGAACTTGTGAGTTTATATGGCTAAATTTTAGTGATTATT
66 ATGATTATCGTTATAATACAAAAATTGAACTTGTGAGTTTATATGGCTAAATTTTAGTGATTATT
7846964 TGTTAATTTTATGAATTTTATGATGAGTTATTTCATATGTATTGATGATAAAATCGTGAATAATG
131 TGTTAATTTTATGAATTTTATGATGAGTTATTTCATATGTATTGATGATAAAATCGTGAATAATG
7847029 TAAAAGCATGAAAATTGAATAAATGATCAAATTGAGCATTTCAGTTCAGTGACAAGATGAATTGA
196 TAAAAGCATGAAAATTGAATAAATGATCAAATTGAGCATTTCAGTTCAGTGACAAGATGAATTGA
7847094 AGGAAAAGACCATGGTTGGACCATGGAAACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTG
261 AGGAAAAGACCATGGTTGGACCATGGAAACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTG
7847159 ATCAAGGACAAATGA
326 ATCAAGGACAAATGA
7847174 TATAATCGATGAGTGTTGGATTAAAAATGATATAATGTTTTATTTGGAATATTTATTATGAAATT
1 TATAATCGATGAGTGTTGGATTAAAAATGATATAATGTTTTATTTGGAATATTTATTATGAAATT
7847239 ATGATTATCGTTATAATACAAAAATTGAACTTGTGAGTTTATATGGCTAAATTTTAGTGATTATT
66 ATGATTATCGTTATAATACAAAAATTGAACTTGTGAGTTTATATGGCTAAATTTTAGTGATTATT
7847304 TGTTAATTTTATGAATTTTATGATGAGTTATTTCATATGTATTGATGATAAAATCGTGAATAATG
131 TGTTAATTTTATGAATTTTATGATGAGTTATTTCATATGTATTGATGATAAAATCGTGAATAATG
7847369 TAAAAGCATGAAAATTGAATAAATGATCAAATTGAGCATTTCAGTTCAGTGACAAGATGAATTGA
196 TAAAAGCATGAAAATTGAATAAATGATCAAATTGAGCATTTCAGTTCAGTGACAAGATGAATTGA
7847434 AGGAAAAGACCATGGTTGGACCATGGAAACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTG
261 AGGAAAAGACCATGGTTGGACCATGGAAACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTG
7847499 ATCAAGGACAAATGA
326 ATCAAGGACAAATGA
7847514 AAGTGATAAG
Statistics
Matches: 678, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
340 678 1.00
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.36
Consensus pattern (340 bp):
TATAATCGATGAGTGTTGGATTAAAAATGATATAATGTTTTATTTGGAATATTTATTATGAAATT
ATGATTATCGTTATAATACAAAAATTGAACTTGTGAGTTTATATGGCTAAATTTTAGTGATTATT
TGTTAATTTTATGAATTTTATGATGAGTTATTTCATATGTATTGATGATAAAATCGTGAATAATG
TAAAAGCATGAAAATTGAATAAATGATCAAATTGAGCATTTCAGTTCAGTGACAAGATGAATTGA
AGGAAAAGACCATGGTTGGACCATGGAAACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTG
ATCAAGGACAAATGA
Found at i:7847539 original size:50 final size:50
Alignment explanation
Indices: 7847464--7847640 Score: 239
Period size: 50 Copynumber: 3.5 Consensus size: 50
7847454 CCATGGAAAC
*
7847464 AAGTGATAAGTGATAGCTTCGGCTACACTTAACTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
7847514 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
7847564 AAGTGATAAGCGATAGCTTCGGCTACACTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * * *
7847614 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
7847641 CTGATCCGTG
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
50 87 0.79
51 23 0.21
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.25
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:7847826 original size:31 final size:31
Alignment explanation
Indices: 7847618--7847819 Score: 287
Period size: 31 Copynumber: 6.5 Consensus size: 31
7847608 AAATGACAAC
*
7847618 TGAAAAGTGGTAGCTTCAGCTACCTGATCCG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
7847649 TGAAAAGTGGTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
7847680 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
7847711 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* * *
7847742 TGAAAAGTGGTAACTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* * **
7847773 CGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
7847804 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
7847820 TGGCTACAAG
Statistics
Matches: 152, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 152 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Done.