Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 203 of 335
Found at i:60538180 original size:64 final size:64
Alignment explanation
Indices: 60538099--60538282 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
60538089 AGACATTATG
* * * *
60538099 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * *
60538163 ATGTAGCTAGGTCGCATGCATGGTTCCAAGTGAATGACACCATGTAGACAAGAGAGCTATGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTG--T-ACACCATGTAGACAAGAGAGCTACGAGAT
60538228 AA
63 AA
* *
60538230 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
60538283 CGAACTATAT
Statistics
Matches: 100, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 27 0.27
66 23 0.23
67 29 0.29
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:60542586 original size:68 final size:67
Alignment explanation
Indices: 60542514--60542663 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
60542504 CATCATGTGT
* * * *
60542514 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
60542576 ATGTAG
62 ATGTAG
** * *
60542582 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
60542647 AG
66 AG
60542649 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
60542664 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:60542619 original size:64 final size:64
Alignment explanation
Indices: 60542538--60542721 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
60542528 AGACATTATG
* *
60542538 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
60542602 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
60542667 AA
63 AA
* * * *
60542669 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
60542722 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:60546066 original size:27 final size:27
Alignment explanation
Indices: 60546012--60546118 Score: 146
Period size: 27 Copynumber: 4.0 Consensus size: 27
60546002 AGCACGACTG
* *
60546012 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
60546038 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
60546065 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
60546092 CCAGATCAGATAGTTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
60546119 GCAGGACGCT
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
26 15 0.21
27 57 0.78
28 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:60547555 original size:25 final size:24
Alignment explanation
Indices: 60547522--60547578 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 24
60547512 AACTCTTGCT
60547522 CCTTGATCAGCTCCTAAATCTTCTCC
1 CCTT-ATCAGCTCCTAAATCTTCT-C
60547548 CCTTATCAGCTCCTAAATCTTCTC
1 CCTTATCAGCTCCTAAATCTTCTC
60547572 CCTTATC
1 CCTTATC
60547579 CCCTCCTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 8 0.26
25 19 0.61
26 4 0.13
ACGTcount: A:0.19, C:0.39, G:0.05, T:0.37
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCTTCTC
Found at i:60547584 original size:24 final size:25
Alignment explanation
Indices: 60547522--60547585 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
60547512 AACTCTTGCT
*
60547522 CCTTGATCAGCTCCTAAATCTTCTCC
1 CCTT-ATCACCTCCTAAATCTTCTCC
*
60547548 CCTTATCAGCTCCTAAATCTTCT-C
1 CCTTATCACCTCCTAAATCTTCTCC
*
60547572 CCTTATCCCCTCCT
1 CCTTATCACCTCCT
60547586 TACTCAATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 13 0.36
25 19 0.53
26 4 0.11
ACGTcount: A:0.17, C:0.42, G:0.05, T:0.36
Consensus pattern (25 bp):
CCTTATCACCTCCTAAATCTTCTCC
Found at i:60549496 original size:27 final size:28
Alignment explanation
Indices: 60549440--60549509 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
60549430 AAACTTGTAC
60549440 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
60549468 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
60549495 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
60549510 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:60549520 original size:27 final size:27
Alignment explanation
Indices: 60549440--60549521 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
60549430 AAACTTGTAC
* *
60549440 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
60549468 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
60549495 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
60549522 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:60552255 original size:27 final size:28
Alignment explanation
Indices: 60552225--60552324 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
60552215 ATAGTGAGTC
60552225 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
60552252 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
60552280 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
60552311 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60552325 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:60553176 original size:7 final size:7
Alignment explanation
Indices: 60553166--60553190 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60553156 TCATCACCAC
60553166 AACATCA
1 AACATCA
60553173 AACATCA
1 AACATCA
60553180 AACATCA
1 AACATCA
60553187 AACA
1 AACA
60553191 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:60560110 original size:27 final size:28
Alignment explanation
Indices: 60560080--60560179 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
60560070 ATAGTGAGTC
60560080 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
60560107 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
60560135 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
60560166 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60560180 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:60561033 original size:7 final size:7
Alignment explanation
Indices: 60561023--60561047 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60561013 TCATCACCAC
60561023 AACATCA
1 AACATCA
60561030 AACATCA
1 AACATCA
60561037 AACATCA
1 AACATCA
60561044 AACA
1 AACA
60561048 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:60564306 original size:29 final size:29
Alignment explanation
Indices: 60564264--60564338 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
60564254 GGTTGAGAGA
* * *
60564264 ATGGCACTATGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
* *
60564293 ATGGCAGTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
60564322 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
60564339 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:60571609 original size:30 final size:30
Alignment explanation
Indices: 60571575--60571634 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
60571565 ATTTAATACG
60571575 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
60571605 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
60571635 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:60577304 original size:15 final size:15
Alignment explanation
Indices: 60577256--60577334 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
60577246 CAAAGATAAC
*
60577256 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
60577270 AAGAAATCCATG-ATA
1 AAGAAATCCA-GAATA
* *
60577285 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
60577300 AAGAAATCCAGAAT-
1 AAGAAATCCAGAATA
* *
60577314 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
60577329 AAGAAA
1 AAGAAA
60577335 CCTAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 21 0.40
15 31 0.58
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.18, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:60577334 original size:29 final size:30
Alignment explanation
Indices: 60577257--60577334 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 30
60577247 AAAGATAACA
*
60577257 AGAAAACC-GAATAAAGAAATCCATGATAG
1 AGAAACCCAGAATAAAGAAATCCATGATAG
60577286 AGAAACCCAGAATAAAGAAATCCA-GAATA-
1 AGAAACCCAGAATAAAGAAATCCATG-ATAG
* * *
60577315 AGAGATCCAGGATAAAGAAA
1 AGAAACCCAGAATAAAGAAA
60577335 CCTAAGATAC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
29 25 0.58
30 18 0.42
ACGTcount: A:0.56, C:0.14, G:0.18, T:0.12
Consensus pattern (30 bp):
AGAAACCCAGAATAAAGAAATCCATGATAG
Found at i:60589592 original size:18 final size:18
Alignment explanation
Indices: 60589569--60589603 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
60589559 AACATAGGAA
*
60589569 ATTTTTCTTTTATTTTTT
1 ATTTTTATTTTATTTTTT
60589587 ATTTTTATTTTATTTTT
1 ATTTTTATTTTATTTTT
60589604 CTTGTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (18 bp):
ATTTTTATTTTATTTTTT
Found at i:60591841 original size:35 final size:35
Alignment explanation
Indices: 60591801--60591870 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
60591791 CCTAGAGACA
60591801 AAATTGGAATTTATGGAAATATTAGGGGCAAAATG
1 AAATTGGAATTTATGGAAATATTAGGGGCAAAATG
60591836 AAATTGGAATTTATGGAAATATTAGGGGCAAAATG
1 AAATTGGAATTTATGGAAATATTAGGGGCAAAATG
60591871 GTAATCTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.43, C:0.03, G:0.26, T:0.29
Consensus pattern (35 bp):
AAATTGGAATTTATGGAAATATTAGGGGCAAAATG
Found at i:60592735 original size:22 final size:23
Alignment explanation
Indices: 60592696--60592738 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
60592686 GGAGTTCTAC
*
60592696 CCATCCATCCTCTACACTCCACT
1 CCATCCAGCCTCTACACTCCACT
60592719 CCATCCAGCC-CTACACTCCA
1 CCATCCAGCCTCTACACTCCA
60592739 TGTGGGGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.53, G:0.02, T:0.21
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCCACT
Found at i:60592995 original size:27 final size:27
Alignment explanation
Indices: 60592936--60592996 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
60592926 AAACATATCA
* * *
60592936 TAGGGGTATATCAGTCATTTTACTTAT
1 TAGGGGTATAACAGTCATTTCACTTAG
60592963 TAGGGGTATAACAGTCATTTCA-TTAG
1 TAGGGGTATAACAGTCATTTCACTTAG
60592989 TATGGGGT
1 TA-GGGGT
60592997 CTAAGTGTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 5 0.17
27 25 0.83
ACGTcount: A:0.26, C:0.10, G:0.25, T:0.39
Consensus pattern (27 bp):
TAGGGGTATAACAGTCATTTCACTTAG
Found at i:60596789 original size:37 final size:37
Alignment explanation
Indices: 60596733--60596875 Score: 250
Period size: 37 Copynumber: 3.9 Consensus size: 37
60596723 TCAGACGAAG
* *
60596733 TCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
60596770 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
* *
60596807 TCTCCACACGTAGTCATCGGGTCTTACCTGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
60596844 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
60596876 ATATATTTCC
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:60597083 original size:50 final size:49
Alignment explanation
Indices: 60597025--60597173 Score: 212
Period size: 50 Copynumber: 3.0 Consensus size: 49
60597015 GCACATCGCC
60597025 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATACATATCTCATA
* * * *
60597075 TATATATTTCACATTGACCATTCAGCTTTACCACATATGCATATCTC--A
1 TACATATTTCACATAG-CCATTCGGCTTTACCACATATACATATCTCATA
*
60597123 TACATATCTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATACATATCTCATA
60597173 T
1 T
60597174 TCACCACATT
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
48 40 0.47
49 4 0.05
50 42 0.49
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (49 bp):
TACATATTTCACATAGCCATTCGGCTTTACCACATATACATATCTCATA
Found at i:60597154 original size:48 final size:48
Alignment explanation
Indices: 60597041--60597288 Score: 237
Period size: 47 Copynumber: 5.2 Consensus size: 48
60597031 TTTCACACTA
* *
60597041 GCCATTCGGCTTTACCACATATACATATCTCATATATAT-ATTTCACATTG
1 GCCATTCGGCTTTACCACATATGCATATCTCATACAT-TCA--TCACATTG
* * *
60597091 ACCATTCAGCTTTACCACATATGCATATCTCATACATATC-TCACATTA
1 GCCATTCGGCTTTACCACATATGCATATCTCATACAT-TCATCACATTG
* *
60597139 GCCATTCGGCTTTACCACATATACATATCTCAT--ATTCACCACATTG
1 GCCATTCGGCTTTACCACATATGCATATCTCATACATTCATCACATTG
* * *
60597185 GCCATTTGGCCTTATCACACATATGCAT-GCTC--ACATTCATCACATTG
1 GCCATTCGGCTTTA-C-CACATATGCATATCTCATACATTCATCACATTG
* * *
60597232 GCCATTCGGCCTTATCACGTATATGCATGT-TC--ACATTCATCACATTG
1 GCCATTCGGCTTTACCAC--ATATGCATATCTCATACATTCATCACATTG
60597279 GCCATTCGGC
1 GCCATTCGGC
60597289 CTTATCTCAT
Statistics
Matches: 171, Mismatches: 18, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
45 5 0.03
46 20 0.12
47 64 0.37
48 47 0.27
50 35 0.20
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (48 bp):
GCCATTCGGCTTTACCACATATGCATATCTCATACATTCATCACATTG
Found at i:60597229 original size:47 final size:47
Alignment explanation
Indices: 60597131--60597323 Score: 219
Period size: 47 Copynumber: 4.1 Consensus size: 47
60597121 CATACATATC
* * * *
60597131 TCACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATACAT-GCTCACATTCA
* * *
60597177 CCACATTGGCCATTTGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
** * *
60597224 TCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
* * ***
60597271 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
60597318 TCACAT
1 TCACAT
60597324 AAAATCCTAA
Statistics
Matches: 128, Mismatches: 17, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
46 18 0.14
47 100 0.78
48 10 0.08
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
Found at i:60597276 original size:94 final size:93
Alignment explanation
Indices: 60597033--60597323 Score: 248
Period size: 94 Copynumber: 3.1 Consensus size: 93
60597023 CCTACATATT
* * * * * *
60597033 TCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTGACCATTC
1 TCACATTAGCCATTCGGCCTTACCACATATACATATCTCACAT-T-CA--CCACATTGGCCATTC
* * * *
60597098 AGCTTTA-C-CACATATGCATATCTCATACATATC-
62 GGCCTTATCACACATATACACA-CTC--ACAT-TCA
* * *
60597131 TCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATTCACCACATTGGCCATTTGGCC
1 TCACATTAGCCATTCGGCCTTACCACATATACATATCTCACATTCACCACATTGGCCATTCGGCC
* **
60597196 TTATCACACATATGCATGCTCACATTCA
66 TTATCACACATATACACACTCACATTCA
* * * * *
60597224 TCACATTGGCCATTCGGCCTTATCACGTATATGCATGT-TCACATTCATCACATTGGCCATTCGG
1 TCACATTAGCCATTCGGCCTTACCAC--ATATACATATCTCACATTCACCACATTGGCCATTCGG
* * *
60597288 CCTTATCTCATATATACACATTCACATTCA
64 CCTTATCACACATATACACACTCACATTCA
60597318 TCACAT
1 TCACAT
60597324 AAAATCCTAA
Statistics
Matches: 166, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
92 2 0.01
93 27 0.16
94 70 0.42
95 12 0.07
96 12 0.07
97 1 0.01
98 42 0.25
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (93 bp):
TCACATTAGCCATTCGGCCTTACCACATATACATATCTCACATTCACCACATTGGCCATTCGGCC
TTATCACACATATACACACTCACATTCA
Found at i:60602265 original size:40 final size:39
Alignment explanation
Indices: 60602100--60602283 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
60602090 AAATTGAATG
* * *
60602100 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
60602140 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
60602180 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
60602220 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
60602259 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
60602284 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:60602308 original size:80 final size:81
Alignment explanation
Indices: 60602140--60602328 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
60602130 GCTGGAAATT
* * * *
60602140 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
60602205 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
60602221 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
60602284 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
60602300 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
60602329 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:60607163 original size:48 final size:48
Alignment explanation
Indices: 60607099--60607224 Score: 180
Period size: 48 Copynumber: 2.6 Consensus size: 48
60607089 CAAGGTAAAT
* * *
60607099 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
60607147 ATATGTATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
** *
60607195 GGATGTATATTTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
60607225 TTGTGCAATA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
Found at i:60607250 original size:48 final size:47
Alignment explanation
Indices: 60607110--60607253 Score: 164
Period size: 48 Copynumber: 3.0 Consensus size: 47
60607100 TATATATGTG
* * *
60607110 TGGTAAAGCCGAATGGCTAATATGAGACATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATATGA-ATATGTATGAGATGTGTATATT
* *
60607158 TGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG-GGATGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATG-TGTATATT
* * * *
60607206 TGGTAAAGCCGAATGGCTATTGTGCAATACGTAGGAGATGTGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATGTGTATATT
60607254 GTGGCCGAAT
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
48 79 0.98
49 2 0.02
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAATATGAATATGTATGAGATGTGTATATT
Found at i:60607433 original size:37 final size:37
Alignment explanation
Indices: 60607383--60607463 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
60607373 GGAAATATAT
* *
60607383 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTCTG
1 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
*
60607420 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTTTA
1 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
60607457 TCCGGGT
1 TCCGGGT
60607464 TAAAACCCCG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.22, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
Found at i:60618093 original size:19 final size:19
Alignment explanation
Indices: 60618069--60618106 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
60618059 TGGGCCACGA
60618069 TGGGCCGAAATGGGC-CGTG
1 TGGGCC-AAATGGGCTCGTG
*
60618088 TGGGCCTAATGGGCTCGTG
1 TGGGCCAAATGGGCTCGTG
60618107 GGTTCCACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.13, C:0.21, G:0.45, T:0.21
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCGTG
Found at i:60621632 original size:42 final size:41
Alignment explanation
Indices: 60621556--60621634 Score: 104
Period size: 42 Copynumber: 1.9 Consensus size: 41
60621546 AGACCATGCC
* *** *
60621556 TGGGACATTGGCATCGTATTTGATTTTGTTTAAGACCTATT
1 TGGGACAGTGGCATCGTATTTGATTACATGTAAGACCTATT
60621597 TGGGACAGTGGCATCGATATTTGATTACATGTAAGACC
1 TGGGACAGTGGCATCG-TATTTGATTACATGTAAGACC
60621635 ACATCTAGGA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
41 15 0.47
42 17 0.53
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.37
Consensus pattern (41 bp):
TGGGACAGTGGCATCGTATTTGATTACATGTAAGACCTATT
Found at i:60623546 original size:38 final size:38
Alignment explanation
Indices: 60623479--60623618 Score: 199
Period size: 38 Copynumber: 3.6 Consensus size: 38
60623469 CAGCACAAAA
* * *
60623479 CCTGCGGGACTTTAAGCTCAGATATAATACCAACACTAGG
1 CCTGCGGGA-TTTAA-CCCGGATATAATACCAGCACTAGG
*
60623519 CCTGCGGGATTTAACCCGTATATAATACCAGCACTAGG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACTAGG
* * *
60623557 CCTGCGAGATTTAACCCGGATATAATACCAGCACGAAG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACTAGG
60623595 CCTGCGGGATTTAACCCGGATATA
1 CCTGCGGGATTTAACCCGGATATA
60623619 TTTCCAGTTT
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
38 77 0.85
39 5 0.05
40 9 0.10
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (38 bp):
CCTGCGGGATTTAACCCGGATATAATACCAGCACTAGG
Found at i:60624593 original size:27 final size:28
Alignment explanation
Indices: 60624537--60624606 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
60624527 AAATTTGTAC
60624537 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
60624565 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
60624592 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
60624607 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:60628087 original size:19 final size:21
Alignment explanation
Indices: 60628058--60628098 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
60628048 TAATTGATAA
*
60628058 AATGATGAAAAT-ACCCTTAT
1 AATGATGAAAATGACCATTAT
60628078 AATG-TGAAAATGACCATTAT
1 AATGATGAAAATGACCATTAT
60628098 A
1 A
60628099 CCCCTAGGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.29
Consensus pattern (21 bp):
AATGATGAAAATGACCATTAT
Found at i:60628243 original size:25 final size:25
Alignment explanation
Indices: 60628209--60628302 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
60628199 GAGGAAGTGC
60628209 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
60628234 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
60628259 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
60628283 AAAAGGGCTCTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
60628303 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
24 18 0.27
25 48 0.73
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:60628315 original size:24 final size:24
Alignment explanation
Indices: 60628208--60628315 Score: 119
Period size: 25 Copynumber: 4.4 Consensus size: 24
60628198 GGAGGAAGTG
* *
60628208 CAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAGGGCTCTGCCCCAGTTTAT
* *
60628232 CGAAAAGGGCTTTGCCCCAGTTTAC
1 C-AAAAGGGCTCTGCCCCAGTTTAT
*
60628257 CGAAAAGGGCTTTGCCCCAGTTTAT
1 C-AAAAGGGCTCTGCCCCAGTTTAT
*
60628282 CAAAAGGGCTCTGCCCTAG-TTAT
1 CAAAAGGGCTCTGCCCCAGTTTAT
*
60628305 TAAAAGAGGCT
1 CAAAAG-GGCT
60628316 AGGCCTCCAG
Statistics
Matches: 78, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
23 9 0.12
24 21 0.27
25 48 0.62
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (24 bp):
CAAAAGGGCTCTGCCCCAGTTTAT
Found at i:60636752 original size:38 final size:38
Alignment explanation
Indices: 60636685--60636824 Score: 190
Period size: 38 Copynumber: 3.6 Consensus size: 38
60636675 CAGCACAAAA
* * **
60636685 CCTGCGGGACTTTAAGCTCAGATATAATACTGGCACTAGG
1 CCTGCGGGA-TTTAA-CCCGGATATAATACCAGCACTAGG
* *
60636725 CCTGCGGGATTTAACCCGAATATAATACCAACACTAGG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACTAGG
* *
60636763 CCTGCGGGATTTAACCCGGATATAATACCAGCACGAAG
1 CCTGCGGGATTTAACCCGGATATAATACCAGCACTAGG
60636801 CCTGCGGGATTTAACCCGGATATA
1 CCTGCGGGATTTAACCCGGATATA
60636825 TTTCCCGCAT
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 76 0.84
39 5 0.06
40 9 0.10
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (38 bp):
CCTGCGGGATTTAACCCGGATATAATACCAGCACTAGG
Found at i:60643012 original size:17 final size:17
Alignment explanation
Indices: 60642992--60643030 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
60642982 AAATATGATA
60642992 ATTATTA-ATATATAATT
1 ATTATTATATAT-TAATT
*
60643009 ATTAATATATATTAATT
1 ATTATTATATATTAATT
60643026 ATTAT
1 ATTAT
60643031 CAACTTTACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTATTATATATTAATT
Found at i:60643026 original size:14 final size:14
Alignment explanation
Indices: 60642983--60643019 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
60642973 CTTAATAAAA
60642983 AATATGATAATTATT
1 AATAT-ATAATTATT
60642998 AATATATAATTATT
1 AATATATAATTATT
60643012 AATATATA
1 AATATATA
60643020 TTAATTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (14 bp):
AATATATAATTATT
Found at i:60643755 original size:24 final size:25
Alignment explanation
Indices: 60643717--60643774 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
60643707 ATTTTTCTCC
* *
60643717 TAAATTTGAATTTTATTTAATTATT
1 TAAATTTTAATTTTATTGAATTATT
60643742 TAAATTTTAA-TTTATTGAATTATT
1 TAAATTTTAATTTTATTGAATTATT
*
60643766 AATAATTTT
1 TA-AATTTT
60643775 TATTAATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 14 0.48
25 15 0.52
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (25 bp):
TAAATTTTAATTTTATTGAATTATT
Found at i:60643772 original size:25 final size:25
Alignment explanation
Indices: 60643718--60643774 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
60643708 TTTTTCTCCT
* * *
60643718 AAATTTGAATTTTATTTAATTATTT
1 AAATTTTAATTTTATTGAATTATTA
60643743 AAATTTTAA-TTTATTGAATTATTA
1 AAATTTTAATTTTATTGAATTATTA
60643767 ATAATTTT
1 A-AATTTT
60643775 TATTAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 14 0.50
25 14 0.50
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.58
Consensus pattern (25 bp):
AAATTTTAATTTTATTGAATTATTA
Found at i:60645307 original size:50 final size:49
Alignment explanation
Indices: 60645232--60645466 Score: 231
Period size: 50 Copynumber: 4.7 Consensus size: 49
60645222 AATACACGTA
* * *
60645232 TGTAGTACTAAGTGTAGGCTACTATGTGTATCATACTGTTAAGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGACTGTTAA-TCACATG
* ** *
60645282 TGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTA-TC-A-GACTGTTAATCACATG
* * *
60645333 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGATGAGGTCACATG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGACTG-TTA-ATCACATG
* * ** * * * *
60645383 TGTAGTACTAAGTGAAGGTTACTACATGTACCAGATTGTTGATCGCATG
1 TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGACTGTTAATCACATG
*
60645432 TGTAGTACTAAGTGCAGGCTACTATGCGTATCAGA
1 TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGA
60645467 TAGCTTCGGC
Statistics
Matches: 151, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 37 0.25
50 68 0.45
51 37 0.25
52 3 0.02
53 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (49 bp):
TGTAGTACTAAGTGCAGGCTACTATGTGTATCAGACTGTTAATCACATG
Found at i:60645406 original size:101 final size:98
Alignment explanation
Indices: 60645226--60645467 Score: 281
Period size: 101 Copynumber: 2.4 Consensus size: 98
60645216 ATTGTGAATA
* * * * *
60645226 CACGTATGTAGTACTAAGTGTAGGCTACTATGTGTATCATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGA-TGTGAAGTCACATGTGTAGTACT
* **
60645291 AAGTGCAGGCTACTATGCGTACTCA-A-TGACTTCGAT
65 AAGTGAAGGCTACTACACGTAC-CAGATTG--TT-GAT
* *
60645327 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTCACATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATG-TGAAGTCACATGTGTAGTACT
* *
60645392 AAGTGAAGGTTACTACATGTACCAGATTGTTGAT
65 AAGTGAAGGCTACTACACGTACCAGATTGTTGAT
* * *
60645426 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT
60645468 AGCTTCGGCT
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
99 41 0.34
100 6 0.05
101 73 0.60
102 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (98 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGTGAAGTCACATGTGTAGTACTA
AGTGAAGGCTACTACACGTACCAGATTGTTGAT
Found at i:60645583 original size:27 final size:26
Alignment explanation
Indices: 60645553--60645604 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
60645543 GGGAAAATCG
60645553 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGT-G-AATATGTGCAAAGTTATT
* *
60645580 ATAAGGTGAATATGTGCAAATTTAT
1 ATAAAGTGAATATGTGCAAAGTTAT
60645605 GTTGTTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 8 0.36
26 8 0.36
27 6 0.27
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.37
Consensus pattern (26 bp):
ATAAAGTGAATATGTGCAAAGTTATT
Found at i:60652794 original size:50 final size:49
Alignment explanation
Indices: 60652719--60652955 Score: 199
Period size: 50 Copynumber: 4.8 Consensus size: 49
60652709 TGAATACACG
* * *
60652719 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTATTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTATTAA-TCACA
* * * ** *
60652769 TGTGTAGTACCAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TC-A-GACTATTAATCACA
* * * * *
60652820 TATGTAGTATTAAGTGCAGGCTACTACGTGTATCAGA-TGATGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACT-ATTA-ATCACA
* * * * * * *
60652870 TCTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTTGATCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTATTAATCACA
* *
60652919 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA
60652956 TAGCTTCGGC
Statistics
Matches: 148, Mismatches: 32, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 37 0.25
50 69 0.47
51 33 0.22
52 3 0.02
53 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTATTAATCACA
Found at i:60653073 original size:27 final size:26
Alignment explanation
Indices: 60653043--60653094 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
60653033 GGGAAAATCG
60653043 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGT-G-AATATGTGCAAAGTTATT
* *
60653070 ATAAGGTGAATATGTGCAAATTTAT
1 ATAAAGTGAATATGTGCAAAGTTAT
60653095 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 8 0.36
26 8 0.36
27 6 0.27
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.37
Consensus pattern (26 bp):
ATAAAGTGAATATGTGCAAAGTTATT
Found at i:60655186 original size:47 final size:47
Alignment explanation
Indices: 60655117--60655652 Score: 820
Period size: 47 Copynumber: 11.3 Consensus size: 47
60655107 CCCTTCGGGA
* * * *
60655117 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
60655164 CTTATCACACATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
60655211 TTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
60655258 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
60655305 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
60655352 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
60655399 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
60655446 CTTATCACACATATGCACTTTCACATTTATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
60655493 TTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
60655540 CTTATCACATATATACATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC--ACTTTCACATTCATCACATTGGCCATTAGGC
*
60655589 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTAGGC
60655638 CTTATCACATATATA
1 CTTATCACATATATA
60655653 TATATCTCAT
Statistics
Matches: 444, Mismatches: 41, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
47 355 0.80
49 87 0.20
51 2 0.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:60655386 original size:25 final size:25
Alignment explanation
Indices: 60655214--60655292 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
60655204 ATTAGGCTTT
60655214 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
*** * *
60655239 ATCACAT-TGGCCAC--TCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
60655261 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
60655286 ATCACAT
1 ATCACAT
60655293 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 9 0.23
23 7 0.18
24 7 0.18
25 16 0.41
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:60655599 original size:41 final size:41
Alignment explanation
Indices: 60655554--60655648 Score: 118
Period size: 49 Copynumber: 2.1 Consensus size: 41
60655544 TCACATATAT
60655554 ACATACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
60655595 ACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 AC----AT----ACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
60655644 ACATA
1 ACATA
60655649 TATATATATC
Statistics
Matches: 46, Mismatches: 0, Indels: 16
0.74 0.00 0.26
Matches are distributed among these distances:
41 3 0.07
45 4 0.09
49 39 0.85
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31
Consensus pattern (41 bp):
ACATACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
Found at i:60661379 original size:27 final size:27
Alignment explanation
Indices: 60661303--60661392 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
60661293 TTTAGTTTAC
* *
60661303 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
60661330 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
60661357 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
60661384 TAAAATTAC
1 TAAAATTAC
60661393 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:60661402 original size:54 final size:54
Alignment explanation
Indices: 60661303--60661409 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
60661293 TTTAGTTTAC
* * *
60661303 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
60661357 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
60661410 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:60661428 original size:27 final size:27
Alignment explanation
Indices: 60661398--60661607 Score: 255
Period size: 27 Copynumber: 7.8 Consensus size: 27
60661388 ATTACCAAAG
* *
60661398 TACCCCCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
* * *
60661425 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
*
60661452 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTATCGTTT
*
60661479 TACCCTCGACTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
*
60661506 TACCCTCGACTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTATCGTTT
* *
60661533 TACCCTCGATTTATAGAATTA-CTATTT
1 TACCCTCGATTTACAGAATTATC-GTTT
* *
60661560 TACCCTTGATTTACAGAATTA-CTATTT
1 TACCCTCGATTTACAGAATTATC-GTTT
*
60661587 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
60661608 CTAAAATACC
Statistics
Matches: 167, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
26 2 0.01
27 164 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTATCGTTT
Found at i:60661617 original size:27 final size:27
Alignment explanation
Indices: 60661533--60661810 Score: 120
Period size: 27 Copynumber: 10.2 Consensus size: 27
60661523 ATTATCGTTT
* * ***
60661533 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
60661560 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
60661587 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
60661614 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* **
60661641 TACCC-CTAGTTTGTAAAATTA-TCAAAA
1 TACCCTCGA-TTTACAAAATTACT-AAAA
* * *** **
60661668 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
60661695 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
60661722 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
60661749 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * *
60661778 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
60661805 TACCCT
1 TACCCT
60661811 TAGTTGTAGA
Statistics
Matches: 204, Mismatches: 33, Indels: 28
0.77 0.12 0.11
Matches are distributed among these distances:
26 3 0.01
27 175 0.86
28 7 0.03
29 19 0.09
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:60661618 original size:81 final size:80
Alignment explanation
Indices: 60661344--60661619 Score: 216
Period size: 81 Copynumber: 3.4 Consensus size: 80
60661334 AATACTGAAA
** * * * * *** *
60661344 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACTATTTTACCCTCGATT
60661409 TACAGAATTATTGTTT
66 TACAGAATTA-TGTTT
* * * *** * * *
60661425 TACCCCCGATTTACATAATTACCGTTTTACCC-CTGATTTACATAATTA-TCGTTTTACCCTCGA
1 TACCCTCGATTTACAAAATTACTGAAATACCCTC-GATTTATAAAATTACT-ATTTTACCCTCGA
*
60661488 CTTACAGAATTATCGTTT
64 TTTACAGAATTAT-GTTT
* * *** * *
60661506 TACCCTCGACTTACAGAATTA-TCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGAT
1 TACCCTCGATTTACAAAATTACT-GAAATACCCTCGATTTATAAAATTACTATTTTACCCTCGAT
*
60661570 TTACAGAATTACTATTT
65 TTACAGAATTA-TGTTT
*
60661587 TACCCTCGATTTACAAAATTACTAAAATACCCT
1 TACCCTCGATTTACAAAATTACTGAAATACCCT
60661620 TAGTTTGTAA
Statistics
Matches: 151, Mismatches: 36, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
80 2 0.01
81 145 0.96
82 4 0.03
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACTATTTTACCCTCGATT
TACAGAATTATGTTT
Found at i:60661645 original size:54 final size:54
Alignment explanation
Indices: 60661587--60661726 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 54
60661577 ATTACTATTT
* **
60661587 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
60661641 TACCC-CTAGTTTGTAAAATTA-TCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACT-AAAATACCCTTAGTTTGTAAAATTACCAAAA
*
60661695 TACCCTCAATTTGTAAAATTACCAAAATACCC
1 TACCCTCAATTTGTAAAATTACTAAAATACCC
60661727 CTGATTTACA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
53 2 0.03
54 70 0.96
55 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:60661749 original size:54 final size:54
Alignment explanation
Indices: 60661587--60661754 Score: 148
Period size: 54 Copynumber: 3.1 Consensus size: 54
60661577 ATTACTATTT
* ** * *
60661587 TACCCTCGATTTACAAAATTACTAAAATA-CCCTTAGTTTGTA-AAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGA-TTTG-ACAAATTA-CAGAAA
* * * * ** *
60661641 TACCC-CTAGTTTGTAAAATTATCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCTGATTTGACAAATTACAGAAA
60661695 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTT-ACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGACAAA-TTACAGAAA
60661749 TACCCT
1 TACCCT
60661755 TGACTTTCTA
Statistics
Matches: 90, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
53 5 0.06
54 81 0.90
55 4 0.04
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGACAAATTACAGAAA
Found at i:60661750 original size:81 final size:81
Alignment explanation
Indices: 60661602--60661756 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
60661592 TCGATTTACA
* * * *
60661602 AAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTATCAAA
60661667 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
*
60661683 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-CA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTATCA
60661745 GAAATACCCTTG
64 -AAATACCCTTG
60661757 ACTTTCTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
79 2 0.03
80 8 0.12
81 56 0.85
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTATCAAA
ATACCCTTGGTTTGTG
Found at i:60661910 original size:27 final size:27
Alignment explanation
Indices: 60661869--60661933 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
60661859 ACCTTTATTA
* * *
60661869 GGTAAAAAGATCGTAA-AGCCCTTGTAG
1 GGTAAAATGACCGTAATA-CCCCTGTAG
* *
60661896 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
60661923 GGTAAAATGAC
1 GGTAAAATGAC
60661934 GAATATGCCC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:60663168 original size:9 final size:9
Alignment explanation
Indices: 60663156--60663212 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
60663146 TTTGATAAAC
60663156 ATGATATGT
1 ATGATATGT
*
60663165 ATGATATGCAC
1 ATGATATG--T
*
60663176 ATGACATGT
1 ATGATATGT
*
60663185 ATGATATGCAC
1 ATGATATG--T
60663196 ATGATATGT
1 ATGATATGT
60663205 ATGATATG
1 ATGATATG
60663213 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:60663179 original size:20 final size:20
Alignment explanation
Indices: 60663154--60663224 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
60663144 ATTTTGATAA
60663154 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
60663174 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
60663194 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
60663214 ACATGAGATGT
1 ACATGATATGT
60663225 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:60663201 original size:11 final size:11
Alignment explanation
Indices: 60663165--60663219 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
60663155 CATGATATGT
60663165 ATGATATGCAC
1 ATGATATGCAC
* *
60663176 ATGACATG--T
1 ATGATATGCAC
60663185 ATGATATGCAC
1 ATGATATGCAC
*
60663196 ATGATATG--T
1 ATGATATGCAC
60663205 ATGATATGCAC
1 ATGATATGCAC
60663216 ATGA
1 ATGA
60663220 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:60663301 original size:23 final size:23
Alignment explanation
Indices: 60663271--60663437 Score: 244
Period size: 23 Copynumber: 7.1 Consensus size: 23
60663261 AGGAAGTGCA
60663271 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
60663294 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
60663318 AAAAGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
* *
60663342 AAATGGTTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
60663365 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
60663388 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
60663411 AAAAGGGCTTTTGCCCCAATTATT
1 -AAAGGGCTTATGCCCCAGTTATT
60663435 AAA
1 AAA
60663438 AGAGGCTAGG
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
23 69 0.52
24 64 0.48
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:60663330 original size:24 final size:23
Alignment explanation
Indices: 60663270--60663459 Score: 238
Period size: 24 Copynumber: 8.0 Consensus size: 23
60663260 GAGGAAGTGC
60663270 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
60663293 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
60663316 CAAAAAGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
60663340 CAAAATGGTTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
60663364 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
60663387 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
60663411 AAAAGGGCTTTTGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
60663435 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
60663459 A
1 A
60663460 TGATAAAGCA
Statistics
Matches: 149, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
23 64 0.43
24 76 0.51
25 9 0.06
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:60663338 original size:47 final size:47
Alignment explanation
Indices: 60663269--60663437 Score: 250
Period size: 47 Copynumber: 3.6 Consensus size: 47
60663259 GGAGGAAGTG
60663269 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * * *
60663316 CAAAAAGGCTTATGCCCCAGTTATCAAAATGGTTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
*
60663364 -TAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
60663410 TAAAAGGGCTTTTGCCCCAATTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
60663438 AGAGGCTAGG
Statistics
Matches: 108, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
46 20 0.19
47 68 0.63
48 20 0.19
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:60663687 original size:31 final size:31
Alignment explanation
Indices: 60663652--60663715 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
60663642 CGTTTACCGT
*
60663652 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
60663683 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
60663714 AA
1 AA
60663716 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:60670168 original size:80 final size:80
Alignment explanation
Indices: 60670084--60670232 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
60670074 TATGGTAACC
* * * *
60670084 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
60670148 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
60670164 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
60670229 CCGG
66 CCGG
60670233 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:60670174 original size:40 final size:38
Alignment explanation
Indices: 60670125--60670232 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
60670115 ATCACGATTT
*
60670125 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
60670165 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
60670205 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
60670233 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:60674001 original size:11 final size:11
Alignment explanation
Indices: 60673965--60674020 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
60673955 AATGGTATGT
60673965 ATGATATGCAC
1 ATGATATGCAC
* *
60673976 ATGACATG--T
1 ATGATATGCAC
60673985 ATGATATGCAC
1 ATGATATGCAC
*
60673996 ATGATATG--T
1 ATGATATGCAC
60674005 ATGATATGCAC
1 ATGATATGCAC
60674016 ATGAT
1 ATGAT
60674021 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:60674020 original size:20 final size:20
Alignment explanation
Indices: 60673960--60674020 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
60673950 GATAAAATGG
60673960 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
60673980 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
60674000 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
60674020 T
1 T
60674021 GTAATCATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:60674174 original size:24 final size:24
Alignment explanation
Indices: 60674069--60674198 Score: 210
Period size: 23 Copynumber: 5.4 Consensus size: 24
60674059 GGAGGAGGTG
60674069 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
60674093 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
60674118 T-AAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
60674141 T-AAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
60674164 TAAAAGGGCTTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
60674188 TAAAAGAGGCT
1 TAAAAG-GGCT
60674199 AGGCCTCTAG
Statistics
Matches: 100, Mismatches: 3, Indels: 5
0.93 0.03 0.05
Matches are distributed among these distances:
23 46 0.46
24 28 0.28
25 26 0.26
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:60675722 original size:12 final size:12
Alignment explanation
Indices: 60675701--60675739 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
60675691 AGGAGTTCGT
*
60675701 GGACGAGGCCGC
1 GGACGTGGCCGC
60675713 GGACGTGGCCGC
1 GGACGTGGCCGC
*
60675725 GGACGTGGTCGC
1 GGACGTGGCCGC
60675737 GGA
1 GGA
60675740 AGGGTGCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.13, C:0.28, G:0.51, T:0.08
Consensus pattern (12 bp):
GGACGTGGCCGC
Found at i:60681988 original size:11 final size:11
Alignment explanation
Indices: 60681952--60682007 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
60681942 CATGGTATGT
60681952 ATGATATGCAC
1 ATGATATGCAC
* *
60681963 ATGACATG--T
1 ATGATATGCAC
60681972 ATGATATGCAC
1 ATGATATGCAC
*
60681983 ATGATATG--T
1 ATGATATGCAC
60681992 ATGATATGCAC
1 ATGATATGCAC
60682003 ATGAT
1 ATGAT
60682008 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:60682007 original size:20 final size:20
Alignment explanation
Indices: 60681941--60682007 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
60681931 ATTTTGATAA
*
60681941 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
60681961 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
60681981 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
60682001 ACATGAT
1 ACATGAT
60682008 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:60682166 original size:24 final size:24
Alignment explanation
Indices: 60682056--60682199 Score: 195
Period size: 23 Copynumber: 6.0 Consensus size: 24
60682046 GGAGGAAGTG
*
60682056 TAAAAGGGCTTATGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
60682080 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
60682105 T-AAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
60682128 T-AAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
60682151 TAAAAGGACTTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
60682175 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
60682200 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
23 46 0.43
24 31 0.29
25 31 0.29
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:60682429 original size:31 final size:31
Alignment explanation
Indices: 60682394--60682457 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
60682384 CGTTCACAGT
60682394 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
60682425 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
60682456 AA
1 AA
60682458 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:60683445 original size:2 final size:2
Alignment explanation
Indices: 60683438--60683467 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
60683428 GAGACTAGTC
60683438 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60683468 GTCATGATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60684617 original size:49 final size:50
Alignment explanation
Indices: 60684551--60684702 Score: 182
Period size: 51 Copynumber: 3.0 Consensus size: 50
60684541 GTAGCCAAAC
* * *
60684551 TATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAA-T
1 TATCCGGTACTCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGT
* * * * *
60684600 TATCCGGTACAT-GTAGTAGCCTGCACTTAGTACTACAAACGTGATCGAAGT
1 TATCCGGTAC-TCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAAGT
* *
60684651 TATCGGGTACTCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAGT
1 TATCCGGTACTCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGT
60684701 TA
1 TA
60684703 CATATATCCC
Statistics
Matches: 84, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
49 36 0.43
50 10 0.12
51 38 0.45
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (50 bp):
TATCCGGTACTCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGT
Found at i:60685523 original size:30 final size:30
Alignment explanation
Indices: 60685489--60685547 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
60685479 TCCTTAACTC
60685489 AAACTTTGGAAAATTTACAATTTTGCCCCA
1 AAACTTTGGAAAATTTACAATTTTGCCCCA
* * * *
60685519 AAACTTTTGCATATTTACACTTTTGCCCC
1 AAACTTTGGAAAATTTACAATTTTGCCCC
60685548 TAGGCTCGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCA
Found at i:60688746 original size:80 final size:80
Alignment explanation
Indices: 60688613--60688798 Score: 241
Period size: 80 Copynumber: 2.3 Consensus size: 80
60688603 ATTGAATGAT
* * * * *
60688613 ATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGC-AT
* *
60688678 T-GTGCTAGTGGCTAC
65 TCGTGCAAGTGGCTAA
*
60688693 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
* *
60688758 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGCTAA
*
60688773 ATCCGGGCTAAGACCCGAAGG-CATTT
1 ATCCGGGCTAAGTCCCG-AGGACATTT
60688799 GTGCAAATCG
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 3 0.03
80 87 0.94
81 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGCTAA
Found at i:60688803 original size:40 final size:40
Alignment explanation
Indices: 60688653--60688804 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
60688643 TGGAAATTAT
* * * * * *
60688653 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
* * * * *
60688693 ATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAGTTAA
* *
60688733 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
60688773 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
60688805 ATCGTGATAT
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.03
40 88 0.94
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
Found at i:60688815 original size:80 final size:80
Alignment explanation
Indices: 60688651--60688834 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
60688641 GCTGGAAATT
* * *
60688651 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGTCCCGAGGACA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
* * *
60688716 TTTATGCTAGTAATT
66 TTTATGCAAATAATG
* * *
60688731 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAAATCCGGGCTAAGACCCGAAGG-
1 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCAAGTGGCTAAATCCGGGCTAAGACCCG-AGGA
* **
60688794 CATTTGTGCAAATCGTG
64 CATTTATGCAAATAATG
* *
60688811 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGTTAAGACCCGAAGGC
60688835 CTTGGTGCGG
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 81 0.93
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
TTTATGCAAATAATG
Found at i:60688817 original size:40 final size:38
Alignment explanation
Indices: 60688650--60688834 Score: 156
Period size: 40 Copynumber: 4.7 Consensus size: 38
60688640 TGCTGGAAAT
* * *
60688650 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * * * *
60688689 CTACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAAT
1 -TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGT--G
*
60688730 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TG
* *
60688769 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * *
60688809 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
60688835 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
39 5 0.04
40 109 0.92
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG
Found at i:60696880 original size:80 final size:80
Alignment explanation
Indices: 60696747--60696932 Score: 241
Period size: 80 Copynumber: 2.3 Consensus size: 80
60696737 ATTGAATGAT
* * * * *
60696747 ATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGC-AT
* *
60696812 T-GTGCTAGTGGCTAC
65 TCGTGCAAGTGGCTAA
*
60696827 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
* *
60696892 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGCTAA
*
60696907 ATCCGGGCTAAGACCCGAAGG-CATTT
1 ATCCGGGCTAAGTCCCG-AGGACATTT
60696933 GTGCAAATCG
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 3 0.03
80 87 0.94
81 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAGGACATTTATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGCTAA
Found at i:60696937 original size:40 final size:40
Alignment explanation
Indices: 60696787--60696938 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
60696777 TGGAAATTAT
* * * * * *
60696787 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
* * * * *
60696827 ATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAGTTAA
* *
60696867 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
60696907 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
60696939 ATCGTGATAT
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.03
40 88 0.94
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
Found at i:60696949 original size:80 final size:80
Alignment explanation
Indices: 60696785--60696968 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
60696775 GCTGGAAATT
* * *
60696785 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGTCCCGAGGACA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
* * *
60696850 TTTATGCTAGTAATT
66 TTTATGCAAATAATG
* * *
60696865 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAAATCCGGGCTAAGACCCGAAGG-
1 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCAAGTGGCTAAATCCGGGCTAAGACCCG-AGGA
* **
60696928 CATTTGTGCAAATCGTG
64 CATTTATGCAAATAATG
* *
60696945 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGTTAAGACCCGAAGGC
60696969 CTTGGTGCGG
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 81 0.93
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
TTTATGCAAATAATG
Found at i:60696951 original size:40 final size:38
Alignment explanation
Indices: 60696784--60696968 Score: 156
Period size: 40 Copynumber: 4.7 Consensus size: 38
60696774 TGCTGGAAAT
* * *
60696784 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * * * *
60696823 CTACATCCGGGCTAAGTCCCG-AGGACATTTATGCTAGTAAT
1 -TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGT--G
*
60696864 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TG
* *
60696903 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * *
60696943 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
60696969 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
39 5 0.04
40 109 0.92
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG
Found at i:60713431 original size:40 final size:40
Alignment explanation
Indices: 60713268--60713407 Score: 187
Period size: 40 Copynumber: 3.5 Consensus size: 40
60713258 CGGATGATAA
* * *
60713268 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTCGAGCGAGCT-ACTATA-T
*
60713308 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACTATAT
*
60713348 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACTATAT
60713388 CCGGGCTAAGTCCCGAAGGC
1 CCGGGCTAAGTCCCGAAGGC
60713408 GTTTAAGCTA
Statistics
Matches: 93, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
40 89 0.96
41 4 0.04
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.21
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACTATAT
Found at i:60716226 original size:29 final size:28
Alignment explanation
Indices: 60716192--60716383 Score: 136
Period size: 29 Copynumber: 6.6 Consensus size: 28
60716182 TGATGGTCAA
*
60716192 AACCATCCCTTTTCATATTTGATGGTTG
1 AACCATCCCTTTTCATAGTTGATGGTTG
* *
60716220 AAGCCATCCCTTTTCATA-TTCGATGATCG
1 AA-CCATCCCTTTTCATAGTT-GATGGTTG
* *
60716249 TCACCATCTCTTTTCATAGTTGATGGTCAT-
1 -AACCATCCCTTTTCATAGTTGATGGT--TG
* * *
60716279 CACCATCCCTTTTCATAGTTGATAGTCG
1 AACCATCCCTTTTCATAGTTGATGGTTG
* * * *
60716307 ACACTATCCCTTTTAATTAATCGATGGTTG
1 A-ACCATCCCTTTTCA-TAGTTGATGGTTG
* * *
60716337 TCACAATCCCTTTTCATAGTTGATAGTTG
1 -AACCATCCCTTTTCATAGTTGATGGTTG
* *
60716366 AAACTATCCATTTTCATA
1 -AACCATCCCTTTTCATA
60716384 TTCGATGCTT
Statistics
Matches: 128, Mismatches: 26, Indels: 19
0.74 0.15 0.11
Matches are distributed among these distances:
28 4 0.03
29 100 0.78
30 24 0.19
ACGTcount: A:0.24, C:0.23, G:0.12, T:0.40
Consensus pattern (28 bp):
AACCATCCCTTTTCATAGTTGATGGTTG
Found at i:60716320 original size:58 final size:56
Alignment explanation
Indices: 60716196--60716383 Score: 173
Period size: 58 Copynumber: 3.2 Consensus size: 56
60716186 GGTCAAAACC
* * * *
60716196 ATCCCTTTTCATATTTGATGGTTGAAGCCATCCCTTTTCATA-TTCGAT-GATCGTCACC
1 ATCCCTTTTCATAATTGATGGTT-CA-CCATCCCTTTTCATAGTT-GATAG-TCGACACT
* *
60716254 ATCTCTTTTCATAGTTGATGGTCATCACCATCCCTTTTCATAGTTGATAGTCGACACT
1 ATCCCTTTTCATAATTGATGGT--TCACCATCCCTTTTCATAGTTGATAGTCGACACT
* * * * *
60716312 ATCCCTTTTAATTAATCGATGGTTGTCACAATCCCTTTTCATAGTTGATAGTTGAAACT
1 ATCCCTTTTCA-TAATTGATGG-T-TCACCATCCCTTTTCATAGTTGATAGTCGACACT
*
60716371 ATCCATTTTCATA
1 ATCCCTTTTCATA
60716384 TTCGATGCTT
Statistics
Matches: 109, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
58 55 0.50
59 52 0.48
60 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.40
Consensus pattern (56 bp):
ATCCCTTTTCATAATTGATGGTTCACCATCCCTTTTCATAGTTGATAGTCGACACT
Found at i:60716362 original size:59 final size:58
Alignment explanation
Indices: 60716278--60716396 Score: 166
Period size: 59 Copynumber: 2.0 Consensus size: 58
60716268 TTGATGGTCA
* * * *
60716278 TCACCATCCCTTTTCATAGTTGATAGTCGACACTATCCCTTTTAATTAATCGATGGTTG
1 TCACAATCCCTTTTCATAGTTGATAGTCGAAACTATCCATTTTAA-TAATCGATGCTTG
* * *
60716337 TCACAATCCCTTTTCATAGTTGATAGTTGAAACTATCCATTTTCATATTCGATGCTTG
1 TCACAATCCCTTTTCATAGTTGATAGTCGAAACTATCCATTTTAATAATCGATGCTTG
60716395 TC
1 TC
60716397 TATACGTCTT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 13 0.25
59 40 0.75
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.40
Consensus pattern (58 bp):
TCACAATCCCTTTTCATAGTTGATAGTCGAAACTATCCATTTTAATAATCGATGCTTG
Found at i:60721823 original size:40 final size:40
Alignment explanation
Indices: 60721720--60721850 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 40
60721710 ATACTATTTG
* *
60721720 ATTCAGGGATACCAAAGTACAAACAGGGTCACGTATGTGC
1 ATTCAGGGATACCAAAGTACAAACAGGGGCACATATGTGC
*
60721760 ATTCAGGCATACCAAAGTACAAACAGGGGCACATATGTGC
1 ATTCAGGGATACCAAAGTACAAACAGGGGCACATATGTGC
* ** * * ** *
60721800 ATTCAGGGGTACTGAAGTGCAAACAGGAGCATGTATGCGC
1 ATTCAGGGATACCAAAGTACAAACAGGGGCACATATGTGC
*
60721840 ATCCAGGGATA
1 ATTCAGGGATA
60721851 ATTATCTATA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.34, C:0.20, G:0.27, T:0.19
Consensus pattern (40 bp):
ATTCAGGGATACCAAAGTACAAACAGGGGCACATATGTGC
Found at i:60733974 original size:25 final size:24
Alignment explanation
Indices: 60733921--60733990 Score: 63
Period size: 25 Copynumber: 2.8 Consensus size: 24
60733911 GAGGAAGTGC
*
60733921 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTATGCCCCAGTTTA-CA
*
60733946 AAAAGGGCTTTGCCCCAGTTATTA-A
1 AAAAGGGCTATGCCCCAG-T-TTACA
*
60733971 AAAA-GGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCC-CCAGTT
60733991 ACATGATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
23 1 0.03
24 8 0.21
25 25 0.66
26 1 0.03
27 3 0.08
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTATGCCCCAGTTTACA
Found at i:60734223 original size:31 final size:31
Alignment explanation
Indices: 60734185--60734295 Score: 154
Period size: 31 Copynumber: 3.6 Consensus size: 31
60734175 CCGTTTACAC
60734185 TAAAGGCTTCGACCCAGTGGTATGAATAATG
1 TAAAGGCTTCGACCCAGTGGTATGAATAATG
*
60734216 TAAAGGCTTC-AGCCCAGTGATATGAATAATG
1 TAAAGGCTTCGA-CCCAGTGGTATGAATAATG
* *
60734247 -AATAGGCTTCGGCCCAGTGGCATGAATAATG
1 TAA-AGGCTTCGACCCAGTGGTATGAATAATG
*
60734278 TAAAGGCTTCGGCCCAGT
1 TAAAGGCTTCGACCCAGT
60734296 ACATGCTGAG
Statistics
Matches: 72, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
30 3 0.04
31 67 0.93
32 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (31 bp):
TAAAGGCTTCGACCCAGTGGTATGAATAATG
Found at i:60740838 original size:27 final size:27
Alignment explanation
Indices: 60740310--60740837 Score: 688
Period size: 27 Copynumber: 19.6 Consensus size: 27
60740300 AAAGTACTCC
*
60740310 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
60740337 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
60740364 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
60740391 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
60740418 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
60740445 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
***
60740472 C-ATTTTACAGAATTATTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
60740499 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
60740526 CGATTTATAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
60740553 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
60740580 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
60740607 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
60740634 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
60740660 CTAATTTACATAATTACCATTTTACCC-
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
60740687 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
60740714 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
60740741 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
60740768 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
60740795 TTATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
60740822 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
60740838 TAAAATACCC
Statistics
Matches: 443, Mismatches: 50, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
26 26 0.06
27 414 0.93
28 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:60742102 original size:25 final size:25
Alignment explanation
Indices: 60742074--60742121 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60742064 TTATACCATG
* * *
60742074 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
60742099 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
60742122 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:60742205 original size:11 final size:11
Alignment explanation
Indices: 60742188--60742224 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
60742178 ACATGACATG
60742188 TATGATATGCA
1 TATGATATGCA
*
60742199 CATGATATG--
1 TATGATATGCA
60742208 TATGATATGCA
1 TATGATATGCA
60742219 TATGAT
1 TATGAT
60742225 GTAATCATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.36
11 14 0.64
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (11 bp):
TATGATATGCA
Found at i:60742224 original size:20 final size:20
Alignment explanation
Indices: 60742164--60742224 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
60742154 ATAAATATGG
*
60742164 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
60742184 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
60742204 TATGTATGATATGCATATGA
1 TATGTATGATATGCACATGA
60742224 T
1 T
60742225 GTAATCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:60742359 original size:23 final size:24
Alignment explanation
Indices: 60742274--60742392 Score: 161
Period size: 24 Copynumber: 5.0 Consensus size: 24
60742264 GAGGAAGTGA
60742274 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
60742298 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
60742322 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
60742346 GAAA-GGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
60742369 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
60742393 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 21 0.24
24 54 0.63
25 11 0.13
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:60742661 original size:30 final size:31
Alignment explanation
Indices: 60742584--60742677 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
60742574 CGTTTACAGT
60742584 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
60742615 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
60742646 AAAGGCTTC-GCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
60742676 AA
1 AA
60742678 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 22 0.35
31 40 0.65
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:60746033 original size:27 final size:27
Alignment explanation
Indices: 60745506--60746032 Score: 715
Period size: 27 Copynumber: 19.6 Consensus size: 27
60745496 AAAGTACTCC
60745506 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
60745533 CG-TTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
60745559 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
60745586 CGATTTA-AGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
60745612 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
60745639 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
60745666 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
60745693 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
60745720 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
60745747 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
60745774 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
60745801 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
60745828 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
60745854 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
60745882 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
60745909 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
60745936 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
60745963 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
60745990 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
60746017 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
60746033 TAAAATACCC
Statistics
Matches: 446, Mismatches: 44, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
25 1 0.00
26 51 0.11
27 390 0.87
28 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:60747296 original size:25 final size:25
Alignment explanation
Indices: 60747267--60747314 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60747257 CCTTATAATG
* * *
60747267 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
60747292 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
60747315 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:60747398 original size:11 final size:11
Alignment explanation
Indices: 60747362--60747417 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
60747352 TATGGTATGT
60747362 ATGATATGCAC
1 ATGATATGCAC
* *
60747373 ATGACATG--T
1 ATGATATGCAC
60747382 ATGATATGCAC
1 ATGATATGCAC
*
60747393 ATGATATG--T
1 ATGATATGCAC
60747402 ATGATATGCAC
1 ATGATATGCAC
60747413 ATGAT
1 ATGAT
60747418 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:60747417 original size:20 final size:20
Alignment explanation
Indices: 60747357--60747417 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
60747347 ATAAATATGG
60747357 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
60747377 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
60747397 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
60747417 T
1 T
60747418 GTAATCATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:60747494 original size:24 final size:24
Alignment explanation
Indices: 60747467--60747609 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
60747457 GAGGAAGTGA
60747467 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
60747491 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
60747515 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
60747538 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
60747562 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
60747586 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
60747610 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:60747560 original size:47 final size:47
Alignment explanation
Indices: 60747467--60747609 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
60747457 GAGGAAGTGA
60747467 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
60747515 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
60747562 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
60747610 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:60747583 original size:71 final size:72
Alignment explanation
Indices: 60747467--60747610 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
60747457 GAGGAAGTGA
*
60747467 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
60747530 CCAGTTAT
65 CCAGTTAT
** * *
60747538 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
60747603 CAGTTAT
66 CAGTTAT
60747610 A
1 A
60747611 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:60747834 original size:31 final size:31
Alignment explanation
Indices: 60747799--60747892 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
60747789 CGTTTACAGT
60747799 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
60747830 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
60747861 AAAGGCTTCGGCCCAGT-ATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
60747891 AA
1 AA
60747893 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
30 15 0.24
31 48 0.76
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:60751164 original size:27 final size:27
Alignment explanation
Indices: 60750718--60751163 Score: 596
Period size: 27 Copynumber: 16.6 Consensus size: 27
60750708 AAGTACTCCT
60750718 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* **
60750745 -AGTTTATAGAATTACTATTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
60750772 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** *
60750799 -AGTTTACAGAATTATTGTTTTACCCTT
1 GA-TTTACAGAATTACCGTTTTACCCTC
*
60750826 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
60750853 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** *
60750880 GATTTGTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
60750907 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
**
60750934 -AGTTTACAGAATTACTATTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
*
60750961 GATTTATAGAATTACCGTTTTACCC-C
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
60750987 TAATTTACATAATTACCATTTTACCC-C
1 -GATTTACAGAATTACCGTTTTACCCTC
* *
60751014 GATTTACATAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
60751041 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
60751068 GATTTACAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
60751095 GATTTATAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
*
60751122 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
60751149 GATTTACAAAATTAC
1 GATTTACAGAATTAC
60751164 TAAAATACCC
Statistics
Matches: 371, Mismatches: 40, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
26 26 0.07
27 342 0.92
28 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:60752429 original size:25 final size:25
Alignment explanation
Indices: 60752400--60752447 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60752390 CCTTATAATG
* * *
60752400 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
60752425 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
60752448 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:60752550 original size:20 final size:20
Alignment explanation
Indices: 60752490--60752550 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
60752480 ATAAATATGG
*
60752490 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
60752510 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
60752530 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
60752550 T
1 T
60752551 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:60752626 original size:24 final size:24
Alignment explanation
Indices: 60752599--60752741 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
60752589 GAGGAAGTGA
60752599 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
60752623 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
60752647 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
60752670 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
60752694 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
60752718 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
60752742 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:60752692 original size:47 final size:47
Alignment explanation
Indices: 60752599--60752741 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
60752589 GAGGAAGTGA
60752599 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
60752647 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
60752694 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
60752742 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:60752715 original size:71 final size:72
Alignment explanation
Indices: 60752599--60752742 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
60752589 GAGGAAGTGA
*
60752599 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
60752662 CCAGTTAT
65 CCAGTTAT
** * *
60752670 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
60752735 CAGTTAT
66 CAGTTAT
60752742 A
1 A
60752743 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:60752968 original size:31 final size:31
Alignment explanation
Indices: 60752933--60753027 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
60752923 CGTTTACAGT
60752933 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
60752964 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
60752995 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
60753026 AA
1 AA
60753028 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:60757941 original size:25 final size:25
Alignment explanation
Indices: 60757907--60757957 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
60757897 CCCTTATAAT
*
60757907 GTGAAAATGACCT-TTTTACCCCTAG
1 GTGAAAATGA-CTATTATACCCCTAG
60757932 GTGAAAATGACTATTATACCCCTAG
1 GTGAAAATGACTATTATACCCCTAG
60757957 G
1 G
60757958 GTTATGTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (25 bp):
GTGAAAATGACTATTATACCCCTAG
Found at i:60758031 original size:10 final size:10
Alignment explanation
Indices: 60758001--60758034 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
60757991 TTTGTACATA
60758001 ATATGCCATG
1 ATATGCCATG
*
60758011 ATATTCACATG
1 ATATGC-CATG
60758022 ATATGCCATG
1 ATATGCCATG
60758032 ATA
1 ATA
60758035 CATACATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (10 bp):
ATATGCCATG
Found at i:60758041 original size:21 final size:19
Alignment explanation
Indices: 60757995--60758047 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 19
60757985 TACTGATTTG
*
60757995 TACATAATATGCCATGATAT
1 TACAT-ATATGCCATGATAA
60758015 TCACATGATATGCCATGATACA
1 T-ACAT-ATATGCCATGATA-A
60758037 TACATATATGC
1 TACATATATGC
60758048 ATGGGTTGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 7 0.24
21 21 0.72
22 1 0.03
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (19 bp):
TACATATATGCCATGATAA
Found at i:60760052 original size:34 final size:33
Alignment explanation
Indices: 60759986--60760052 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 33
60759976 CTTTGTGCAT
*
60759986 TACTGATATTGTACTGTAATGGGTTAAGGCCCA
1 TACTGATATTGCACTGTAATGGGTTAAGGCCCA
60760019 TACTGATATTGCCACTG-ATATGGGCTTAA-GCCCA
1 TACTGATATTG-CACTGTA-ATGGG-TTAAGGCCCA
60760053 GATTGTTCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
33 12 0.40
34 14 0.47
35 4 0.13
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (33 bp):
TACTGATATTGCACTGTAATGGGTTAAGGCCCA
Found at i:60761907 original size:40 final size:40
Alignment explanation
Indices: 60761780--60761909 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
60761770 ATGCTGGAAA
* *
60761780 TTATATCCGGGTTAAGACCCGAAGGCATTCGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* * ***
60761820 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
60761860 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
60761900 TTATATCCGG
1 TTATATCCGG
60761910 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Done.