Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 204 of 335
Found at i:60761908 original size:80 final size:80
Alignment explanation
Indices: 60761742--60761909 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
60761732 AAATTGAATG
* *
60761742 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
60761807 TTCGTGCTAGTGGCT
66 TTCGTGCTAGTGGCT
* * * * *
60761822 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
60761885 CATTTGTGC-ACGTGGTT
64 CATTCGTGCTA-GTGGCT
60761902 ATATCCGG
1 ATATCCGG
60761910 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCTAGTGGCT
Found at i:60765789 original size:24 final size:24
Alignment explanation
Indices: 60765762--60765815 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
60765752 GAAATTGAAA
* *
60765762 GAAAAAGTACAAGA-AAAAAAGAGT
1 GAAAAAGAAAAAGACAAAAAA-AGT
*
60765786 GAAAAAGAAAAAGACAAAAAAATT
1 GAAAAAGAAAAAGACAAAAAAAGT
60765810 GAAAAA
1 GAAAAA
60765816 AAGAAAGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 20 0.77
25 6 0.23
ACGTcount: A:0.72, C:0.04, G:0.17, T:0.07
Consensus pattern (24 bp):
GAAAAAGAAAAAGACAAAAAAAGT
Found at i:60765822 original size:24 final size:23
Alignment explanation
Indices: 60765753--60765828 Score: 64
Period size: 24 Copynumber: 3.0 Consensus size: 23
60765743 AGATCAAGTG
60765753 AAATTGAAAGAAAAAGTACAAGAAAAA
1 AAATTG-AA-AAAAAG-A-AAGAAAAA
*
60765780 AAGAGTGAAAAAGAA-AAAGACAAAA
1 AA-ATTGAAAAA-AAGAAAGA-AAAA
*
60765805 AAATTGAAAAAAAGAAAGGAAAA
1 AAATTGAAAAAAAGAAAGAAAAA
60765828 A
1 A
60765829 GTGAGAGAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
23 7 0.17
24 16 0.38
25 7 0.17
26 3 0.07
27 6 0.14
28 3 0.07
ACGTcount: A:0.72, C:0.03, G:0.17, T:0.08
Consensus pattern (23 bp):
AAATTGAAAAAAAGAAAGAAAAA
Found at i:60768084 original size:16 final size:16
Alignment explanation
Indices: 60768063--60768094 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
60768053 CTGACGGCCA
60768063 AATGGAGGTCGTTAAT
1 AATGGAGGTCGTTAAT
60768079 AATGGAGGTCGTTAAT
1 AATGGAGGTCGTTAAT
60768095 CGAGTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.31, T:0.31
Consensus pattern (16 bp):
AATGGAGGTCGTTAAT
Found at i:60774125 original size:32 final size:32
Alignment explanation
Indices: 60774084--60774184 Score: 193
Period size: 32 Copynumber: 3.2 Consensus size: 32
60774074 ATGTTAATAG
*
60774084 TTAAGGTTAGTTTAGTAATTCGATAAACAAAC
1 TTAAGGTTAGTTTAGTAATTCAATAAACAAAC
60774116 TTAAGGTTAGTTTAGTAATTCAATAAACAAAC
1 TTAAGGTTAGTTTAGTAATTCAATAAACAAAC
60774148 TTAAGGTTAGTTTAGTAATTCAATAAACAAAC
1 TTAAGGTTAGTTTAGTAATTCAATAAACAAAC
60774180 TTAAG
1 TTAAG
60774185 TAAAATAACA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 68 1.00
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.35
Consensus pattern (32 bp):
TTAAGGTTAGTTTAGTAATTCAATAAACAAAC
Found at i:60779701 original size:48 final size:48
Alignment explanation
Indices: 60779639--60780543 Score: 1612
Period size: 48 Copynumber: 18.9 Consensus size: 48
60779629 TATATATGTG
* *
60779639 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAGGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
60779687 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
60779735 TGTGGTAAAGCCGAATGACTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
60779783 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGGTATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
60779831 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
60779879 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
60779927 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
60779975 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
60780023 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
60780071 TGTGGTAAAGTCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
60780119 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
60780167 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
60780215 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
60780263 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
60780311 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
60780359 TATGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
60780407 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
60780455 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAAATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
60780503 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
60780544 GTGTGTATAT
Statistics
Matches: 832, Mismatches: 25, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 832 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:60780734 original size:37 final size:37
Alignment explanation
Indices: 60780684--60780860 Score: 309
Period size: 37 Copynumber: 4.8 Consensus size: 37
60780674 GGAAATATAT
60780684 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60780721 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60780758 TCTGGGTAAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60780795 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60780832 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
60780861 GGACTATTCG
Statistics
Matches: 132, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 132 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:60782695 original size:13 final size:13
Alignment explanation
Indices: 60782679--60782703 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60782669 TGTATACTGA
60782679 AGATGATGTCTCC
1 AGATGATGTCTCC
60782692 AGATGATGTCTC
1 AGATGATGTCTC
60782704 GAATGAGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (13 bp):
AGATGATGTCTCC
Found at i:60783377 original size:25 final size:25
Alignment explanation
Indices: 60783319--60783401 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 25
60783309 TGATACAAAT
*
60783319 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
60783345 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
60783370 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
60783396 TGATAA
1 TGATAA
60783402 GAATTTCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
25 23 0.42
26 32 0.58
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:60788200 original size:26 final size:26
Alignment explanation
Indices: 60788163--60788220 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
60788153 TGATACAAAT
60788163 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
60788189 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
60788215 TGATAA
1 TGATAA
60788221 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:60789749 original size:25 final size:25
Alignment explanation
Indices: 60789701--60789749 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
60789691 ACAGTTTTAC
60789701 CCCTAGGAGATAAATTACCGAAATA
1 CCCTAGGAGATAAATTACCGAAATA
* *
60789726 CCCTAGG-GTTAAATTGACCTAAAT
1 CCCTAGGAGATAAATT-ACCGAAAT
60789750 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (25 bp):
CCCTAGGAGATAAATTACCGAAATA
Found at i:60795481 original size:25 final size:27
Alignment explanation
Indices: 60795412--60795481 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 27
60795402 AAATTTATTT
*
60795412 TATATATTATAATAAT-TAAAGATAAA
1 TATATATTATAATAATATTAAGATAAA
* **
60795438 -ATATGTTATGTTAATTATTAAG-TAAA
1 TATATATTATAATAA-TATTAAGATAAA
60795464 TATATATTAT-ATAATATT
1 TATATATTATAATAATATT
60795482 GATAAAACAA
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
25 15 0.43
26 8 0.23
27 12 0.34
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (27 bp):
TATATATTATAATAATATTAAGATAAA
Found at i:60796244 original size:20 final size:20
Alignment explanation
Indices: 60796219--60796267 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
60796209 GCACTTTGGT
*
60796219 ATTGAATTGAATTAAAATTG
1 ATTGAAATGAATTAAAATTG
*
60796239 ATTGAAATGAATTAAAGTTG
1 ATTGAAATGAATTAAAATTG
60796259 ATTGAAATG
1 ATTGAAATG
60796268 GATTGAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.37
Consensus pattern (20 bp):
ATTGAAATGAATTAAAATTG
Found at i:60799527 original size:137 final size:136
Alignment explanation
Indices: 60799275--60799547 Score: 503
Period size: 137 Copynumber: 2.0 Consensus size: 136
60799265 AGTCTAAGAA
60799275 CATTTCTGAGATCCGTAGTTTTCTAGGTCTTACGGGTTATTATCGACGGTTTGTTGAGGGGTTCT
1 CATTTCTGAGATCCGTAGTTTTCTAGGTCTTACGGGTTATTATCGACGGTTTGTTGAGGGGTTCT
60799340 CGTTGATTGCAGCTTCTCTAACTAAGCTTCTGTGTAAGAATGTTCCTTTTTTTTGGACTAATAGA
66 CGTTGATTGCAGCTTCTCTAACTAAGCTTCTGTGTAAGAATGTTCC-TTTTTTTGGACTAATAGA
60799405 CAACCAT
130 CAACCAT
*
60799412 CATTTCTGAGATCCGTAGTTTTCTAGGTCTTGCGGGTTATTATCGACGGTTTGTTGA-GGGTTCT
1 CATTTCTGAGATCCGTAGTTTTCTAGGTCTTACGGGTTATTATCGACGGTTTGTTGAGGGGTTCT
* *
60799476 CGTTGATTGCAGCTTCTCTGACTAAGCTTCTGTGTAAGAATGTTCCTTTTTTTGGACTAATGGAC
66 CGTTGATTGCAGCTTCTCTAACTAAGCTTCTGTGTAAGAATGTTCCTTTTTTTGGACTAATAGAC
60799541 AACCAT
131 AACCAT
60799547 C
1 C
60799548 GAGCTTTGAA
Statistics
Matches: 133, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
135 25 0.19
136 52 0.39
137 56 0.42
ACGTcount: A:0.19, C:0.18, G:0.23, T:0.40
Consensus pattern (136 bp):
CATTTCTGAGATCCGTAGTTTTCTAGGTCTTACGGGTTATTATCGACGGTTTGTTGAGGGGTTCT
CGTTGATTGCAGCTTCTCTAACTAAGCTTCTGTGTAAGAATGTTCCTTTTTTTGGACTAATAGAC
AACCAT
Found at i:60806045 original size:25 final size:25
Alignment explanation
Indices: 60805999--60806062 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
60805989 TGATTGAGTA
*
60805999 AGGAGGGGATAA-GGGAGAAGATTT
1 AGGAGGTGATAAGGGGAGAAGATTT
60806023 AGGAGGTGATAAGGGGAGAAGATTT
1 AGGAGGTGATAAGGGGAGAAGATTT
*
60806048 AGGAGCTGATCAAGG
1 AGGAGGTGAT-AAGG
60806063 AGCAAGAGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 11 0.31
25 21 0.58
26 4 0.11
ACGTcount: A:0.36, C:0.03, G:0.44, T:0.17
Consensus pattern (25 bp):
AGGAGGTGATAAGGGGAGAAGATTT
Found at i:60808244 original size:40 final size:40
Alignment explanation
Indices: 60808189--60808412 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
60808179 TATTCGGATG
*
60808189 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
60808229 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
60808269 ATATCCGGGCGAAGTCCCGAAGGCATTTGTACGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT--GCG-AGTTACT
* *
60808312 ATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
60808351 ACATCCGGGCTAAGACCCGAAGGCGTTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
60808391 ATATTC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
60808413 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
39 21 0.14
40 100 0.65
42 26 0.17
43 8 0.05
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:60808349 original size:82 final size:82
Alignment explanation
Indices: 60808189--60808412 Score: 298
Period size: 82 Copynumber: 2.8 Consensus size: 82
60808179 TATTCGGATG
* *
60808189 ATATCCGGGCTAAGTCCCGAAGGCATTTGT-GCG-AGTTCCTATATCCGGGCTAAGTCTCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTCGAGTAGTTCCTATATCCGGGCTAAGTCCCGAAGG
60808252 CATTTGTGCTAGTGACT
66 CATTTGTGCTAGTGACT
* *
60808269 ATATCCGGGCGAAGTCCCGAAGGCATTTGTACGAGTAGTTGCTATA-CCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT-CGAGTAGTTCCTATATCCGGGCTAAGTCCCGAAG
60808333 GCATTTGTGCTAGTGACT
65 GCATTTGTGCTAGTGACT
* * * * * * *
60808351 ACATCCGGGCTAAGACCCGAAGGCGTTTGT-GCG-AGTTGCTATATTC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTCGAGTAGTTCCTATATCCGGGCTAAGTCCCGAAGG
60808413 TACTTGGGTT
Statistics
Matches: 129, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
79 25 0.19
80 32 0.25
82 63 0.49
83 9 0.07
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (82 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTCGAGTAGTTCCTATATCCGGGCTAAGTCCCGAAGG
CATTTGTGCTAGTGACT
Found at i:60808657 original size:24 final size:24
Alignment explanation
Indices: 60808613--60808658 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
60808603 GAAGCGTGAA
* *
60808613 GAAATTATGATTTTGTGCATATAT
1 GAAATTATCATTTAGTGCATATAT
60808637 GAAATTATTCATTTAGT-CATAT
1 GAAATTA-TCATTTAGTGCATAT
60808659 GAACGCTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.35, C:0.07, G:0.13, T:0.46
Consensus pattern (24 bp):
GAAATTATCATTTAGTGCATATAT
Found at i:60810399 original size:16 final size:15
Alignment explanation
Indices: 60810373--60810403 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
60810363 ACTAGATCGG
60810373 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
60810388 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
60810404 TGACATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.52, C:0.26, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:60810860 original size:27 final size:27
Alignment explanation
Indices: 60810824--60810930 Score: 146
Period size: 27 Copynumber: 4.0 Consensus size: 27
60810814 AGCGTCCTGC
* * *
60810824 TGGCTATGCCACAACTATCTGATCTGG
1 TGGCTCTGCCACAATTATCTGTTCTGG
60810851 TGGCTCTGCCAC-ATATATCTGTTCTGG
1 TGGCTCTGCCACAAT-TATCTGTTCTGG
60810878 TGGCTCTGCCACAATTATCTGTTCTGG
1 TGGCTCTGCCACAATTATCTGTTCTGG
* *
60810905 TGACTCTGTCAC-ATTATCTGTTCTGG
1 TGGCTCTGCCACAATTATCTGTTCTGG
60810931 CAGTCGTGCT
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
26 15 0.21
27 56 0.77
28 2 0.03
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
TGGCTCTGCCACAATTATCTGTTCTGG
Found at i:60818549 original size:28 final size:27
Alignment explanation
Indices: 60818486--60818555 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
60818476 ATAGTGAGTC
60818486 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
60818513 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
60818541 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60818556 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:60820455 original size:25 final size:25
Alignment explanation
Indices: 60820416--60820472 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
60820406 GTAAGGAGGG
60820416 GATAA-GGGAGAAGATTTAGGAGCT
1 GATAAGGGGAGAAGATTTAGGAGCT
60820440 GATAAGGGGAGAAGATTTAGGAGCT
1 GATAAGGGGAGAAGATTTAGGAGCT
60820465 GATCAAGG
1 GAT-AAGG
60820473 AGCAAGAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 5 0.16
25 22 0.71
26 4 0.13
ACGTcount: A:0.37, C:0.05, G:0.39, T:0.19
Consensus pattern (25 bp):
GATAAGGGGAGAAGATTTAGGAGCT
Found at i:60821915 original size:27 final size:27
Alignment explanation
Indices: 60821879--60821985 Score: 146
Period size: 27 Copynumber: 4.0 Consensus size: 27
60821869 AGCGTCCTGC
* * *
60821879 TGGCTATGCCACAACTATCTGATCTGG
1 TGGCTCTGCCACAATTATCTGTTCTGG
60821906 TGGCTCTGCCAC-ATATATCTGTTCTGG
1 TGGCTCTGCCACAAT-TATCTGTTCTGG
60821933 TGGCTCTGCCACAATTATCTGTTCTGG
1 TGGCTCTGCCACAATTATCTGTTCTGG
* *
60821960 TGACTCTGTCAC-ATTATCTGTTCTGG
1 TGGCTCTGCCACAATTATCTGTTCTGG
60821986 CAGTCGTGCT
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
26 15 0.21
27 56 0.77
28 2 0.03
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
TGGCTCTGCCACAATTATCTGTTCTGG
Found at i:60824188 original size:2 final size:2
Alignment explanation
Indices: 60824181--60824205 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
60824171 GAGACTAGTC
60824181 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
60824206 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60826240 original size:30 final size:30
Alignment explanation
Indices: 60826206--60826266 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
60826196 TCCTTAACTC
60826206 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
60826236 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
60826266 A
1 A
60826267 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:60830672 original size:30 final size:30
Alignment explanation
Indices: 60830638--60830698 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
60830628 TCCTTAACTC
60830638 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
60830668 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
60830698 A
1 A
60830699 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:60837189 original size:40 final size:40
Alignment explanation
Indices: 60837074--60837219 Score: 206
Period size: 40 Copynumber: 3.7 Consensus size: 40
60837064 TGAATGATAC
* * * * * *
60837074 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
60837114 CCGGGTTAAGA-CCGAAGGCA-TTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
60837152 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
60837192 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGTTAAGACCCGAAGGCATTTGTGC
60837220 TTGTGGTTAT
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
38 25 0.26
39 18 0.19
40 53 0.55
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:60837203 original size:78 final size:80
Alignment explanation
Indices: 60837074--60837219 Score: 215
Period size: 78 Copynumber: 1.9 Consensus size: 80
60837064 TGAATGATAC
* * * *
60837074 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGGTTATATCCGGGTTAAGA-CCGAAGGC-ATTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGGCTATACCCGGGTTAAGACCCGAAGGCAATTG
60837137 TGCGAGTTGCTATAT
66 TGCGAGTTGCTATAT
* * *
60837152 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGGCTATACCCGGGTTAAGACCCGAAGGCAATTG
60837217 TGC
66 TGC
60837220 TTGTGGTTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 44 0.75
79 8 0.14
80 7 0.12
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGGCTATACCCGGGTTAAGACCCGAAGGCAATTG
TGCGAGTTGCTATAT
Found at i:60844440 original size:37 final size:36
Alignment explanation
Indices: 60844390--60844476 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
60844380 TACGAAGTCT
60844390 TACCCGGACATAATCTCCACACGTAGTCATCAGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCAGGTC
*
60844426 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCAGGTC
60844463 TCACCCGGAACATA
1 T-ACCCGG-ACATA
60844477 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.87
38 5 0.11
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCAGGTC
Found at i:60844612 original size:49 final size:49
Alignment explanation
Indices: 60844545--60844940 Score: 715
Period size: 49 Copynumber: 8.1 Consensus size: 49
60844535 TTTACCACAT
* *
60844545 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
60844594 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
60844643 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
60844692 ATATATATACATTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
60844741 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCC-TATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
60844789 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
60844838 ATATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
60844886 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
60844935 ATATAT
1 ATATAT
60844941 TATTATGTAC
Statistics
Matches: 336, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 95 0.28
49 241 0.72
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:60844845 original size:97 final size:98
Alignment explanation
Indices: 60844545--60844940 Score: 733
Period size: 97 Copynumber: 4.1 Consensus size: 98
60844535 TTTACCACAT
*
60844545 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTC
60844610 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
60844643 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTC
*
60844708 ACATTCATCACCTCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
60844741 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCC-TATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTC
*
60844805 ACATTCATCACGTCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
60844838 ATATATATACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTC
60844902 ACATTCATCACATCGGCCATTAGGCCTTATCAC
66 ACATTCATCACATCGGCCATTAGGCCTTATCAC
60844935 ATATAT
1 ATATAT
60844941 TATTATGTAC
Statistics
Matches: 289, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
96 3 0.01
97 150 0.52
98 136 0.47
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (98 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:60848330 original size:40 final size:40
Alignment explanation
Indices: 60848281--60848632 Score: 542
Period size: 40 Copynumber: 8.8 Consensus size: 40
60848271 CCAGCATGAT
* * * *
60848281 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* * *
60848321 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* *
60848361 TGCTCTTCGGAATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
60848401 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* * *
60848441 TGCTCTTTGGAACTTAGTCCGGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
60848481 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
* * * *
60848521 TGCTCTTCAGAACTTAGTCCAGATACATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
*
60848561 TGCTCTTCGGAATTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
60848601 TGCTCTTCGGAACTTAGCCCGGATATATCATT
1 TGCTCTTCGGAACTTAGCCCGGATATATCATT
60848633 CTCAATTCTC
Statistics
Matches: 288, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 288 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCATTAGCACGAA
Found at i:60851208 original size:41 final size:41
Alignment explanation
Indices: 60851163--60851280 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
60851153 TGAAAGATAA
60851163 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
60851204 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60851234 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60851275 ATGTAG
1 ATGTAG
60851281 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:60851219 original size:71 final size:71
Alignment explanation
Indices: 60851131--60851294 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
60851121 GAGATGTATC
60851131 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60851196 AGGACA
66 AGGACA
60851202 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60851267 AGGACA
66 AGGACA
60851273 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60851295 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:60858789 original size:41 final size:41
Alignment explanation
Indices: 60858744--60858861 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
60858734 TGAAAGATAA
60858744 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
60858785 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60858815 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
60858856 ATGTAG
1 ATGTAG
60858862 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:60858800 original size:71 final size:71
Alignment explanation
Indices: 60858712--60858875 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
60858702 GAGATGTATC
60858712 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60858777 AGGACA
66 AGGACA
60858783 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60858848 AGGACA
66 AGGACA
60858854 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60858876 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:60860917 original size:37 final size:36
Alignment explanation
Indices: 60860867--60860953 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
60860857 TACGAAGTCT
60860867 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
60860903 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
60860940 TCACCCGGAACATA
1 T-ACCCGG-ACATA
60860954 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:60861089 original size:49 final size:49
Alignment explanation
Indices: 60861022--60861419 Score: 699
Period size: 49 Copynumber: 8.1 Consensus size: 49
60861012 TTTACCACAT
*
60861022 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
60861071 ATATATATACATTTTCACATTCATCACATCAGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
60861120 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
60861169 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
60861218 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
60861267 ATATATATACACTTTCACATTCATCACATCGGCCATTACGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
60861316 ATATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
60861365 ATAT-TAATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATAT-ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
60861414 ATATAT
1 ATATAT
60861420 TATTATGTAC
Statistics
Matches: 333, Mismatches: 14, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
48 1 0.00
49 331 0.99
50 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:60864896 original size:40 final size:40
Alignment explanation
Indices: 60864664--60864889 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
60864654 TCGAATGATG
* * * *
60864664 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
60864704 TCTGGACTAAGATTCGAAGGTATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
60864744 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
60864784 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
**
60864824 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
60864865 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGACTAAGAT-CCGAAGGCATTTG
60864890 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 156 0.94
41 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60868245 original size:17 final size:18
Alignment explanation
Indices: 60868223--60868256 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60868213 TTTTGGGCTA
60868223 TGTGGG-CCACACGGGCG
1 TGTGGGACCACACGGGCG
*
60868240 TGTGGGACCACATGGGC
1 TGTGGGACCACACGGGC
60868257 CCACAATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.26, G:0.44, T:0.15
Consensus pattern (18 bp):
TGTGGGACCACACGGGCG
Found at i:60868447 original size:54 final size:54
Alignment explanation
Indices: 60868371--60868528 Score: 235
Period size: 54 Copynumber: 2.9 Consensus size: 54
60868361 ACCCTTAATC
* * *
60868371 GGTAAAATGACTATTTTGCCCTTATAAAGTAAAATGACTTTTTTGCCCTTATGA
1 GGTAAAATGACTATTTTTCCCTTATAAGGTAAAATGACTGTTTTGCCCTTATGA
* * * * *
60868425 GGTAAAATGATTGTTTTTCCCTTATGAGGTTAAATAACTGTTTTGCCCTTATGA
1 GGTAAAATGACTATTTTTCCCTTATAAGGTAAAATGACTGTTTTGCCCTTATGA
*
60868479 GGTAAAATGACTATTTTTCCCTTATATGGTAAAATGACTGTTTTGCCCTT
1 GGTAAAATGACTATTTTTCCCTTATAAGGTAAAATGACTGTTTTGCCCTT
60868529 TTATGGTAAG
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (54 bp):
GGTAAAATGACTATTTTTCCCTTATAAGGTAAAATGACTGTTTTGCCCTTATGA
Found at i:60868537 original size:27 final size:27
Alignment explanation
Indices: 60868371--60868528 Score: 210
Period size: 27 Copynumber: 5.9 Consensus size: 27
60868361 ACCCTTAATC
* *
60868371 GGTAAAATGACTATTTTGCCCTTATAA
1 GGTAAAATGACTGTTTTGCCCTTATGA
* *
60868398 AGTAAAATGACTTTTTTGCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGA
* *
60868425 GGTAAAATGATTGTTTTTCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGA
* *
60868452 GGTTAAATAACTGTTTTGCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGA
* *
60868479 GGTAAAATGACTATTTTTCCCTTAT-A
1 GGTAAAATGACTGTTTTGCCCTTATGA
60868505 TGGTAAAATGACTGTTTTGCCCTT
1 -GGTAAAATGACTGTTTTGCCCTT
60868529 TTATGGTAAG
Statistics
Matches: 113, Mismatches: 17, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 112 0.99
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGA
Found at i:60868549 original size:27 final size:27
Alignment explanation
Indices: 60868362--60868537 Score: 189
Period size: 27 Copynumber: 6.5 Consensus size: 27
60868352 TGTACCTGGA
*
60868362 CCCTTA-ATCGGTAAAATGACTATTTTG
1 CCCTTATAT-GGTAAAATGACTGTTTTG
** *
60868389 CCCTTATAAAGTAAAATGACTTTTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
* *
60868416 CCCTTATGA-GGTAAAATGATTGTTTTT
1 CCCTTAT-ATGGTAAAATGACTGTTTTG
* *
60868443 CCCTTATGA-GGTTAAATAACTGTTTTG
1 CCCTTAT-ATGGTAAAATGACTGTTTTG
* *
60868470 CCCTTATGA-GGTAAAATGACTATTTTT
1 CCCTTAT-ATGGTAAAATGACTGTTTTG
60868497 CCCTTATATGGTAAAATGACTGTTTTG
1 CCCTTATATGGTAAAATGACTGTTTTG
*
60868524 CCCTTTTATGGTAA
1 CCCTTATATGGTAA
60868538 GATGGTTGTT
Statistics
Matches: 128, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 125 0.98
28 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (27 bp):
CCCTTATATGGTAAAATGACTGTTTTG
Found at i:60868869 original size:18 final size:17
Alignment explanation
Indices: 60868837--60868877 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
60868827 ATTTACTATT
*
60868837 ACTGCACTGTTACTGTA
1 ACTGTACTGTTACTGTA
*
60868854 ACTGTACTGTTTACTGTT
1 ACTGTACTG-TTACTGTA
60868872 ACTGTA
1 ACTGTA
60868878 ATGGGCCAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (17 bp):
ACTGTACTGTTACTGTA
Found at i:60879375 original size:34 final size:33
Alignment explanation
Indices: 60879291--60879377 Score: 129
Period size: 33 Copynumber: 2.6 Consensus size: 33
60879281 CTGTACTAAG
*
60879291 ATGGGCTAAGGCCCAGACTACCTATGTTACTGAA
1 ATGGGCT-AGGCCCAGACTGCCTATGTTACTGAA
* *
60879325 ATCGGCTAGGCCCAGACTGCCTCTGTTACTGAA
1 ATGGGCTAGGCCCAGACTGCCTATGTTACTGAA
60879358 ATGGGCTCAGGCCCAGACTG
1 ATGGGCT-AGGCCCAGACTG
60879378 ATACTATTAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
33 30 0.62
34 18 0.38
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (33 bp):
ATGGGCTAGGCCCAGACTGCCTATGTTACTGAA
Found at i:60879388 original size:34 final size:33
Alignment explanation
Indices: 60879278--60879392 Score: 114
Period size: 34 Copynumber: 3.5 Consensus size: 33
60879268 CTTTGTTTGC
60879278 ATACTG-TACT-AAGATGGGCTAAGGCCCAGACT-
1 ATACTGTTACTGAA-ATGGGCT-AGGCCCAGACTG
*
60879310 ACCTA-TGTTACTGAAATCGGCTAGGCCCAGACTG
1 A--TACTGTTACTGAAATGGGCTAGGCCCAGACTG
*
60879344 CCT-CTGTTACTGAAATGGGCTCAGGCCCAGACTG
1 -ATACTGTTACTGAAATGGGCT-AGGCCCAGACTG
*
60879378 ATACTATTACTGAAA
1 ATACTGTTACTGAAA
60879393 AAGGGGATAA
Statistics
Matches: 69, Mismatches: 5, Indels: 16
0.77 0.06 0.18
Matches are distributed among these distances:
32 1 0.01
33 31 0.45
34 35 0.51
35 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (33 bp):
ATACTGTTACTGAAATGGGCTAGGCCCAGACTG
Found at i:60886544 original size:28 final size:28
Alignment explanation
Indices: 60886513--60886608 Score: 99
Period size: 28 Copynumber: 3.4 Consensus size: 28
60886503 TAGTAACCGA
60886513 GCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAGATCGGGTGTAAG
* * **
60886541 GCACTATGTGTGCAAAAT--TAT-TAACCG
1 GCACTATGTGTGCGAGATCGGGTGTAA--G
60886568 AGCACTATGTGTGCGAGATCGGGTGTAAG
1 -GCACTATGTGTGCGAGATCGGGTGTAAG
*
60886597 GCACTGTGTGTG
1 GCACTATGTGTG
60886609 TGCAAAATTA
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 43 0.81
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.24, C:0.16, G:0.33, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:60886577 original size:56 final size:57
Alignment explanation
Indices: 60886491--60886620 Score: 208
Period size: 56 Copynumber: 2.3 Consensus size: 57
60886481 ATATGAACTT
* * *
60886491 TGTGTGCGAGATTAGTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAGGCAC-TA
1 TGTGTGCAAAATTATTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAGGCACGTA
*
60886547 TGTGTGCAAAATTATTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAGGCACTGTG
1 TGTGTGCAAAATTATTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAGGCAC-GTA
60886605 TGTGTGCAAAATTATT
1 TGTGTGCAAAATTATT
60886621 TAGGGAATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
56 51 0.75
58 17 0.25
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (57 bp):
TGTGTGCAAAATTATTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAGGCACGTA
Found at i:60894262 original size:28 final size:28
Alignment explanation
Indices: 60894231--60894332 Score: 104
Period size: 28 Copynumber: 3.6 Consensus size: 28
60894221 ATGAATATAT
60894231 GCACTATGTGTGCGAGATTAGTAACCGA
1 GCACTATGTGTGCGAGATTAGTAACCGA
60894259 GCACTATGTGTGCGAGATCGGGT-GTAA--G-
1 GCACTATGTGTGCGAGAT----TAGTAACCGA
* * *
60894287 GCACTATGTGTGCGAAATTATTAACCAA
1 GCACTATGTGTGCGAGATTAGTAACCGA
*
60894315 GCACTATGTGTGTGAGAT
1 GCACTATGTGTGCGAGAT
60894333 CGGGTGTAAG
Statistics
Matches: 61, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
24 1 0.02
25 3 0.05
28 51 0.84
29 1 0.02
31 4 0.07
32 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATTAGTAACCGA
Found at i:60894318 original size:56 final size:56
Alignment explanation
Indices: 60894231--60894347 Score: 198
Period size: 56 Copynumber: 2.1 Consensus size: 56
60894221 ATGAATATAT
* *
60894231 GCACTATGTGTGCGAGATTAGTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAAATTAGTAACCAAGCACTATGTGTGCGAGATCGGGTGTAAG
* *
60894287 GCACTATGTGTGCGAAATTATTAACCAAGCACTATGTGTGTGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAAATTAGTAACCAAGCACTATGTGTGCGAGATCGGGTGTAAG
60894343 GCACT
1 GCACT
60894348 GTGATACGAG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.26
Consensus pattern (56 bp):
GCACTATGTGTGCGAAATTAGTAACCAAGCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:60894550 original size:30 final size:30
Alignment explanation
Indices: 60894516--60894612 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
60894506 AGCTCACTCC
*
60894516 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCAAGAGCTAAACCT
* * * * *
60894546 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCAAGAGCTAAACCT
* * *
60894576 CAGCTCAACTTTAGCTCAAGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCAAGAGCTAAACCT
60894606 TAGCTCA
1 TAGCTCA
60894613 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCAAGAGCTAAACCT
Found at i:60897663 original size:13 final size:14
Alignment explanation
Indices: 60897642--60897674 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
60897632 TTTATTAATG
60897642 AAATATATTAAA-AT
1 AAAT-TATTAAATAT
60897656 AAATTATTAAATAT
1 AAATTATTAAATAT
60897670 AAATT
1 AAATT
60897675 TATATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATTATTAAATAT
Found at i:60900280 original size:30 final size:30
Alignment explanation
Indices: 60900222--60900280 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
60900212 ATTTTTGGTC
* **
60900222 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
*
60900252 CTAGGGGCACAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAATGGTCATTTTACCAAAG
60900281 ATATGAATAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:60903198 original size:46 final size:43
Alignment explanation
Indices: 60903055--60903190 Score: 123
Period size: 46 Copynumber: 3.0 Consensus size: 43
60903045 CCCGCCCCTA
*
60903055 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-TATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * *
60903102 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATT
60903148 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
60903191 CCTAGTGACA
Statistics
Matches: 74, Mismatches: 9, Indels: 14
0.76 0.09 0.14
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 29 0.39
47 29 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:60906233 original size:27 final size:28
Alignment explanation
Indices: 60906203--60906302 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
60906193 ATAGTGAGTC
60906203 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
60906230 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
60906258 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
60906289 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60906303 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:60907154 original size:7 final size:7
Alignment explanation
Indices: 60907144--60907168 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60907134 TCATCACCAC
60907144 AACATCA
1 AACATCA
60907151 AACATCA
1 AACATCA
60907158 AACATCA
1 AACATCA
60907165 AACA
1 AACA
60907169 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:60914081 original size:27 final size:28
Alignment explanation
Indices: 60914051--60914150 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
60914041 ATAGTGAGTC
60914051 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
60914078 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
60914106 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
60914137 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60914151 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:60915005 original size:7 final size:7
Alignment explanation
Indices: 60914995--60915019 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60914985 TCATCACCAC
60914995 AACATCA
1 AACATCA
60915002 AACATCA
1 AACATCA
60915009 AACATCA
1 AACATCA
60915016 AACA
1 AACA
60915020 AAGACAACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:60922167 original size:40 final size:40
Alignment explanation
Indices: 60922099--60922276 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
60922089 CCAAGGCCAA
* * * *
60922099 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* *
60922138 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * * *
60922178 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * *
60922218 CGGGTCTTAACCCGGATAT-A-AA-TTTCAGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCA-CA-AA-TGCCTT
*
60922258 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
60922277 CATTCAATTT
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 9 0.08
40 99 0.87
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
Found at i:60924731 original size:27 final size:27
Alignment explanation
Indices: 60924691--60924802 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
60924681 AGGAAGCGTC
*
60924691 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
60924718 CTGGTGGCTCTGCCACACATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* * *
60924745 CTGGTGGCTCTGCCACGAGTATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
* * *
60924773 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
60924799 CTGG
1 CTGG
60924803 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 7 0.10
27 46 0.65
28 18 0.25
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:60924797 original size:54 final size:53
Alignment explanation
Indices: 60924691--60924802 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 53
60924681 AGGAAGCGTC
* *
60924691 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACACATTTCTGTT
1 CTGGTGGCTATGCCACAAGTATCTGATCTGGTGACTCTG-CACACATTTCTGTT
* * * *
60924745 CTGGTGGCTCTGCCACGAGTATCTATATCTGGTGACTCTG-TCACATTATCTGTT
1 CTGGTGGCTATGCCACAAGTATCT-GATCTGGTGACTCTGCACACATT-TCTGTT
60924799 CTGG
1 CTGG
60924803 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
53 6 0.12
54 31 0.62
55 13 0.26
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAAGTATCTGATCTGGTGACTCTGCACACATTTCTGTT
Found at i:60925870 original size:11 final size:10
Alignment explanation
Indices: 60925842--60925875 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
60925832 AGCCTGTAAG
60925842 TATTCTGAAT
1 TATTCTGAAT
*
60925852 TTTTCTGAAT
1 TATTCTGAAT
60925862 ATATTCTGAAT
1 -TATTCTGAAT
60925873 TAT
1 TAT
60925876 CTGTTTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:60927098 original size:21 final size:21
Alignment explanation
Indices: 60927073--60927128 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
60927063 GAGGGTTGTT
60927073 CAACCCGCGAGAGGTGGACCA
1 CAACCCGCGAGAGGTGGACCA
* *
60927094 CAACCAGCAAGAGGTGGACCA
1 CAACCCGCGAGAGGTGGACCA
60927115 CAACCAC-CGAGAGG
1 CAACC-CGCGAGAGG
60927129 ACGTGGAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.34, C:0.32, G:0.30, T:0.04
Consensus pattern (21 bp):
CAACCCGCGAGAGGTGGACCA
Found at i:60929421 original size:40 final size:40
Alignment explanation
Indices: 60929313--60929422 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
60929303 ATTGAATGAT
* * * * *
60929313 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
60929353 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
60929393 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
60929423 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:60929437 original size:40 final size:39
Alignment explanation
Indices: 60929313--60929462 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
60929303 ATTGAATGAT
* * * * * * *
60929313 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
60929353 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
60929393 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
60929433 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
60929463 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:60937209 original size:40 final size:40
Alignment explanation
Indices: 60937101--60937210 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
60937091 ATTGAATGAT
* * * * *
60937101 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
60937141 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
60937181 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
60937211 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:60937225 original size:40 final size:39
Alignment explanation
Indices: 60937101--60937250 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
60937091 ATTGAATGAT
* * * * * * *
60937101 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
60937141 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
60937181 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
60937221 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
60937251 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:60943593 original size:27 final size:27
Alignment explanation
Indices: 60943550--60943654 Score: 92
Period size: 27 Copynumber: 3.9 Consensus size: 27
60943540 AGGAAGCGTC
*
60943550 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTTTGCCACAATTATCTGAT
*
60943577 CTGGTGGCTTTGGCACATATT-TCT-ATT
1 CTGGTGGCTTTGCCACA-ATTATCTGA-T
*
60943604 CTGGTGGCTCTT-CCACGATTATCTGTAT
1 CTGGTGGCT-TTGCCACAATTATCTG-AT
* * *
60943632 CTGGTGACTCTGTCAC-ATTATCT
1 CTGGTGGCTTTGCCACAATTATCT
60943655 ATTCTGGCAG
Statistics
Matches: 64, Mismatches: 7, Indels: 14
0.75 0.08 0.16
Matches are distributed among these distances:
26 4 0.06
27 42 0.66
28 17 0.27
29 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTTTGCCACAATTATCTGAT
Found at i:60943625 original size:54 final size:54
Alignment explanation
Indices: 60943550--60943661 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
60943540 AGGAAGCGTC
* * *
60943550 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTTTGGCACATATTTCTATT
1 CTGGTGGCTATGCCACAATTATCTGTATCTGGTGACTCTGGCACAT-TATCTATT
* * * *
60943604 CTGGTGGCTCTTCCACGATTATCTGTATCTGGTGACTCTGTCACATTATCTATT
1 CTGGTGGCTATGCCACAATTATCTGTATCTGGTGACTCTGGCACATTATCTATT
60943658 CTGG
1 CTGG
60943662 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGTATCTGGTGACTCTGGCACATTATCTATT
Found at i:60969709 original size:40 final size:40
Alignment explanation
Indices: 60969526--60969708 Score: 249
Period size: 40 Copynumber: 4.6 Consensus size: 40
60969516 CGGATGATAA
* * * **
60969526 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
60969566 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGCTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
60969606 CCGGGCTAAGTCCCGAAGGCATTTGTGCGTGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
60969646 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
60969686 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
60969709 GAGCGACTAG
Statistics
Matches: 127, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:60975638 original size:44 final size:43
Alignment explanation
Indices: 60975490--60975648 Score: 191
Period size: 43 Copynumber: 3.7 Consensus size: 43
60975480 AGCTCATACA
*
60975490 ATGCCAACGTCCCAGACGTGGTCTTACAAGT-AATCAAATATAG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATAT-G
* * *
60975533 ATG-CAATTGTCCCAGACATGGTCTTACACG-AAATCAAATACG
1 ATGCCAA-CGTCCCAGACGTGGTCTTACACGTAAATCAAATATG
* *
60975575 AAGCCAACGTCCCAGACGTGGTCTTACACGTAAAAACCAAAT-TG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT--AAATCAAATATG
*
60975619 ATGCCAACGTCCCATACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
60975649 ATTTCACATA
Statistics
Matches: 99, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
42 27 0.27
43 35 0.35
44 29 0.29
45 8 0.08
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCAAATATG
Found at i:60978381 original size:25 final size:25
Alignment explanation
Indices: 60978353--60978403 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
60978343 CCCTTATAAT
* *
60978353 GTGAAAATGACCATTTTGCCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
60978378 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATGACCATTATACCCCTAG
60978403 G
1 G
60978404 GATGTGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (25 bp):
GTGAAAATGACCATTATACCCCTAG
Found at i:60978468 original size:11 final size:10
Alignment explanation
Indices: 60978445--60978480 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
60978435 TTTTATACAA
60978445 GATATGCCAT
1 GATATGCCAT
60978455 GATATGCACAT
1 GATATGC-CAT
60978466 GATATGCCAT
1 GATATGCCAT
60978476 GATAT
1 GATAT
60978481 ATTCATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (10 bp):
GATATGCCAT
Found at i:60978582 original size:24 final size:25
Alignment explanation
Indices: 60978525--60978582 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
60978515 GAAGGAAGTG
60978525 CAAAA-AGGCTTTGCCCCAGTTTAT
1 CAAAAGAGGCTTTGCCCCAGTTTAT
* *
60978549 CGAAAG-GGCTTTGCCCTAG-TTAT
1 CAAAAGAGGCTTTGCCCCAGTTTAT
*
60978572 TAAAAGAGGCT
1 CAAAAGAGGCT
60978583 AGGCCTCCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 8 0.29
24 20 0.71
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:60986073 original size:25 final size:25
Alignment explanation
Indices: 60986044--60986094 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
60986034 CCCTTATAAT
* *
60986044 GTGAAAATAACCATTTTGCCCCTAG
1 GTGAAAATAACCATTATACCCCTAG
*
60986069 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATAACCATTATACCCCTAG
60986094 G
1 G
60986095 GATGTGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (25 bp):
GTGAAAATAACCATTATACCCCTAG
Found at i:60986149 original size:11 final size:11
Alignment explanation
Indices: 60986133--60986173 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
60986123 ACTATTTTAT
60986133 ACATGATATGC
1 ACATGATATGC
60986144 ACATGATATGC
1 ACATGATATGC
60986155 ACATGATATGC
1 ACATGATATGC
60986166 -CATGATAT
1 ACATGATAT
60986174 ATTCATATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
10 8 0.27
11 22 0.73
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (11 bp):
ACATGATATGC
Found at i:60986277 original size:24 final size:25
Alignment explanation
Indices: 60986219--60986287 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
60986209 GAGGAAGTAC
60986219 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
60986244 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
60986269 -AAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
60986288 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
24 19 0.43
25 25 0.57
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:60987826 original size:9 final size:9
Alignment explanation
Indices: 60987812--60987839 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
60987802 AAAAGGGACT
60987812 AAATTGTAA
1 AAATTGTAA
60987821 AAATTGTAA
1 AAATTGTAA
60987830 AAATTGTAA
1 AAATTGTAA
60987839 A
1 A
60987840 TGTTAGGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (9 bp):
AAATTGTAA
Found at i:60990137 original size:2 final size:2
Alignment explanation
Indices: 60990130--60990166 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
60990120 ATATTAGTTC
60990130 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
60990167 TGCGCATTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:60993365 original size:29 final size:29
Alignment explanation
Indices: 60993332--60993396 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
60993322 GTGACGAGAT
60993332 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
60993361 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
60993390 CGGCACT
1 TGGCACT
60993397 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:60999407 original size:23 final size:24
Alignment explanation
Indices: 60999358--60999524 Score: 243
Period size: 23 Copynumber: 7.0 Consensus size: 24
60999348 GCTTTATCAT
*
60999358 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
60999383 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
60999406 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
60999431 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
60999456 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
60999479 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
60999502 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60999525 GCACTTCCTC
Statistics
Matches: 135, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
23 61 0.45
24 21 0.16
25 53 0.39
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:60999462 original size:73 final size:72
Alignment explanation
Indices: 60999349--60999524 Score: 252
Period size: 73 Copynumber: 2.4 Consensus size: 72
60999339 AGCATAGCTG
*
60999349 CTTTATCATATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTAATAACT
1 CTTTATC--ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTAATAACT
60999412 GGGGCATAAGCC
61 GGGGCATAAGCC
*
60999424 CTTTATCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTAATAACTGGGG
1 CTTTATCATAACTGGGGCATAAGCCCTTT-TAATAACTGGGGCATAAGCCCTTTAATAACTGGGG
60999489 CATAAGCC
65 CATAAGCC
60999497 CTTTA--ATAACTGGGGCATAAGCCCTTTT
1 CTTTATCATAACTGGGGCATAAGCCCTTTT
60999525 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 2, Indels: 11
0.88 0.02 0.10
Matches are distributed among these distances:
70 1 0.01
71 22 0.23
72 8 0.08
73 52 0.54
74 6 0.06
75 7 0.07
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (72 bp):
CTTTATCATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGC
ATAAGCC
Found at i:60999599 original size:20 final size:20
Alignment explanation
Indices: 60999574--60999630 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
60999564 TTATGATTAC
60999574 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
60999594 ATCATGAGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
60999614 GTCATGTGCATCTCATA
1 ATCATGTGCATATCATA
60999631 TATACCATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:60999709 original size:25 final size:25
Alignment explanation
Indices: 60999677--60999724 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60999667 ATACATAAAC
* * *
60999677 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
60999702 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
60999725 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:61003923 original size:29 final size:29
Alignment explanation
Indices: 61003891--61003992 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
61003881 GTGACGAGAT
* *
61003891 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
61003920 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* *
61003949 TGGCACTATGTGTGCG-GCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
61003977 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61003993 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
27 2 0.03
28 20 0.33
29 39 0.64
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:61011860 original size:29 final size:29
Alignment explanation
Indices: 61011827--61011929 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
61011817 GTGACGAGAT
* *
61011827 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
61011856 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
61011885 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
61011914 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
61011930 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:61015262 original size:23 final size:24
Alignment explanation
Indices: 61015213--61015356 Score: 195
Period size: 25 Copynumber: 6.0 Consensus size: 24
61015203 GCTTTATCAT
*
61015213 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
61015238 ATAACTGGGG-AAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
61015261 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
61015286 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
61015311 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
61015334 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
61015357 GCACTTCCTC
Statistics
Matches: 110, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
23 36 0.33
24 21 0.19
25 53 0.48
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:61015290 original size:48 final size:48
Alignment explanation
Indices: 61015234--61015356 Score: 189
Period size: 48 Copynumber: 2.6 Consensus size: 48
61015224 CCTAGCCTCT
*
61015234 TTTA-ATAACTGGGG-AAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTATATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
61015280 TTTATCATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCC
1 TTTAT-ATAACTGGGGCATAAGCCCTTT-TAATAACTGGGGCATAAGCCC
61015330 TTTA-ATAACTGGGGCATAAGCCCTTTT
1 TTTATATAACTGGGGCATAAGCCCTTTT
61015357 GCACTTCCTC
Statistics
Matches: 71, Mismatches: 2, Indels: 7
0.89 0.03 0.09
Matches are distributed among these distances:
46 4 0.06
47 1 0.01
48 32 0.45
49 10 0.14
50 24 0.34
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (48 bp):
TTTATATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:61015317 original size:73 final size:74
Alignment explanation
Indices: 61015204--61015355 Score: 213
Period size: 73 Copynumber: 2.1 Consensus size: 74
61015194 AGCATAGCTG
*
61015204 CTTTATCATATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGG-AAAAGCCCTTTTAATAACTG
1 CTTTATCA-ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCC-TTTAATAACTG
61015268 GGGCATAAGCC
64 GGGCATAAGCC
* *
61015279 CTTTATC-ATAACTGG-GGCATAAGCC-CTTTATCATAACTGGGGCATAAGCCCTTTAATAACTG
1 CTTTATCAATAACTGGAGGCAT-AGCCTCTTT-TAATAACTGGGGCAAAAGCCCTTTAATAACTG
61015341 GGGCATAAGCC
64 GGGCATAAGCC
61015352 CTTT
1 CTTT
61015356 TGCACTTCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
72 8 0.11
73 49 0.69
74 7 0.10
75 7 0.10
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (74 bp):
CTTTATCAATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGG
GCATAAGCC
Found at i:61015431 original size:20 final size:20
Alignment explanation
Indices: 61015406--61015466 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
61015396 TTATGATTAC
61015406 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
61015426 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
61015446 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
61015466 A
1 A
61015467 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:61015541 original size:25 final size:25
Alignment explanation
Indices: 61015509--61015556 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61015499 ATACATAAAC
* * *
61015509 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
61015534 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
61015557 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:61021983 original size:28 final size:28
Alignment explanation
Indices: 61021943--61022006 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
61021933 TGGGAAGTAG
*
61021943 TTGGGCCTGATGGGCCATATGAACGTGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
*
61021971 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAACGAGA
61021999 TTGGGCCT
1 TTGGGCCT
61022007 AAAGGGGCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.19, C:0.19, G:0.38, T:0.25
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAACGAGA
Found at i:61022362 original size:27 final size:27
Alignment explanation
Indices: 61022323--61022720 Score: 321
Period size: 27 Copynumber: 14.7 Consensus size: 27
61022313 TAATAAAGAG
** *
61022323 AAATTACTAAAATACCCCTAATTTGTA
1 AAATTACCGAAATACCCCTGATTTGTA
* * *
61022350 AAATTATCGAAATACCCCCGGTTTGTA
1 AAATTACCGAAATACCCCTGATTTGTA
* *
61022377 AAATTACCGAAATA-CTCTCAATTTGTA
1 AAATTACCGAAATACCCCT-GATTTGTA
* ** *
61022404 AAATTACCAAAATACCCCCAATTTGTG
1 AAATTACCGAAATACCCCTGATTTGTA
* * *
61022431 AAATTACTGAAACA-TCCTCGATTTGTA
1 AAATTACCGAAATACCCCT-GATTTGTA
* *
61022458 AAATTATC-AAA-ACACCCTCAATTTGTA
1 AAATTACCGAAATAC-CCCT-GATTTGTA
* * *
61022485 AAATTATCGAAACA-CCTTCGATTTGTA
1 AAATTACCGAAATACCCCT-GATTTGTA
*
61022512 AAATTACC-AAA-ACACCTTCGATTTGTA
1 AAATTACCGAAATAC-CCCT-GATTTGTA
*
61022539 AAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACCGAAATACCCCT-GATTTGTA
* * *
61022566 AAATTACCAAAATACGCTTGATTTGTA
1 AAATTACCGAAATACCCCTGATTTGTA
**
61022593 AAATTACCGAAATACCATTGATTTGTA
1 AAATTACCGAAATACCCCTGATTTGTA
*
61022620 AAATTACCGAAACACCCCTGATTTGTA
1 AAATTACCGAAATACCCCTGATTTGTA
* * *
61022647 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCCTGAT-TTGTA
* *
61022674 AAATTACCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCCTGAT-TTGTA
* *
61022701 AAATGACCGACATACCCCTG
1 AAATTACCGAAATACCCCTG
61022721 TAGGGTAAAA
Statistics
Matches: 309, Mismatches: 49, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
25 2 0.01
26 11 0.04
27 284 0.92
28 10 0.03
29 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCCTGATTTGTA
Found at i:61022674 original size:54 final size:54
Alignment explanation
Indices: 61022323--61022717 Score: 359
Period size: 54 Copynumber: 7.3 Consensus size: 54
61022313 TAATAAAGAG
** * * * * * *
61022323 AAATTACTAAAATACCCCTAATTTGTAAAATTATCGAAATACCCCCGGTTTGTA
1 AAATTACCGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGTA
* ** ** *
61022377 AAATTACCGAAATACTCTCAATTTGTAAAATTACCAAAATACCCCCAATTTGTG
1 AAATTACCGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGTA
* * * * * * *
61022431 AAATTACTGAAACATCCTCGATTTGTAAAATTATCAAAACA-CCCTCAATTTGTA
1 AAATTACCGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT-GATTTGTA
* * * *
61022485 AAATTATCGAAACA-CCTTCGATTTGTAAAATTACCAAAACA-CCTTCGATTTGTA
1 AAATTACCGAAATACCCTT-GATTTGTAAAATTACCAAAATACCCCT-GATTTGTA
** * *
61022539 AAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACGCTTGATTTGTA
1 AAATTACCGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGTA
* * *
61022593 AAATTACCGAAATACCATTGATTTGTAAAATTACCGAAACACCCCTGATTTGTA
1 AAATTACCGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGTA
* * * * *
61022647 AAATTATCGAAATACCCTTG-TAGTGTAAAATTACCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTTGAT-TTGTAAAATTACCAAAATACCCCTGAT-TTGTA
* *
61022701 AAATGACCGACATACCC
1 AAATTACCGAAATACCC
61022718 CTGTAGGGTA
Statistics
Matches: 288, Mismatches: 47, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
53 8 0.03
54 274 0.95
55 6 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
AAATTACCGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTGATTTGTA
Found at i:61022701 original size:81 final size:81
Alignment explanation
Indices: 61022332--61022710 Score: 392
Period size: 81 Copynumber: 4.7 Consensus size: 81
61022322 GAAATTACTA
* * * ** * * *
61022332 AAATACCCCTAATTTGTAAAATTATCGAAATACCCCCGGTTTGTAAAATTACCGAAATACTCTCA
1 AAATACCCTTGATTTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAACACCCTCA
* *
61022397 ATTTGTAAAATTACCA
66 ATTTGTAAAATTATCG
*** * * * * * * *
61022413 AAATACCCCCAATTTGTGAAATTACTGAAACATCCTCGATTTGTAAAATTATCAAAACACCCTCA
1 AAATACCCTTGATTTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAACACCCTCA
61022478 ATTTGTAAAATTATCG
66 ATTTGTAAAATTATCG
* *
61022494 AAACA-CCTTCGATTTGTAAAATTACC-AAA-ACACCTTCGATTTGTAAAATTACCGAAATACCC
1 AAATACCCTT-GATTTGTAAAATTACCGAAATAC-CCTT-GATTTGTAAAATTACCGAAACACCC
* *
61022556 TCAATTTGTAAAATTACCA
63 TCAATTTGTAAAATTATCG
* *
61022575 AAATACGCTTGATTTGTAAAATTACCGAAATACCATTGATTTGTAAAATTACCGAAACACCC-CT
1 AAATACCCTTGATTTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAACACCCTC-
*
61022639 GATTTGTAAAATTATCG
65 AATTTGTAAAATTATCG
* * *
61022656 AAATACCCTTG-TAGTGTAAAATTACCGAAATACCCTTG-TAGTGTAAAATGACCGA
1 AAATACCCTTGAT-TTGTAAAATTACCGAAATACCCTTGAT-TTGTAAAATTACCGA
61022711 CATACCCCTG
Statistics
Matches: 250, Mismatches: 39, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
79 1 0.00
80 11 0.04
81 227 0.91
82 9 0.04
83 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (81 bp):
AAATACCCTTGATTTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTACCGAAACACCCTCA
ATTTGTAAAATTATCG
Found at i:61023292 original size:27 final size:27
Alignment explanation
Indices: 61023225--61023292 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
61023215 TGAGGCTAAG
* * *
61023225 ATGGGC-TAGGCCCAATTGATTCTGTT
1 ATGGGCTTTGGCCCAAATGATTCTGTA
* *
61023251 ATGGGCTGTGACCCAAATGATAT-TGTA
1 ATGGGCTTTGGCCCAAATGAT-TCTGTA
61023278 ATGGGCTTTGGCCCA
1 ATGGGCTTTGGCCCA
61023293 CGTATGCTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
26 6 0.18
27 26 0.79
28 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (27 bp):
ATGGGCTTTGGCCCAAATGATTCTGTA
Found at i:61024765 original size:28 final size:27
Alignment explanation
Indices: 61024710--61024821 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
61024700 AGCATGGCTG
* *
61024710 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
61024736 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
*
61024764 CCAGAACAGA-AATATGTGGCAGGGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
61024791 CCAGATCAGATAATTGTGGTATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
61024818 CCAG
1 CCAG
61024822 GACACTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 47 0.64
28 18 0.25
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:61024801 original size:54 final size:54
Alignment explanation
Indices: 61024710--61024821 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
61024700 AGCATGGCTG
* *
61024710 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * * *
61024764 CCAGAACAGAAATATGTGGCAGGGCCACCAGAT-CAGATAATTGTGGTATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
61024818 CCAG
1 CCAG
61024822 GACACTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:61025259 original size:16 final size:15
Alignment explanation
Indices: 61025238--61025267 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
61025228 AAAATACCAA
61025238 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
61025254 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
61025268 CCGATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:61031782 original size:40 final size:40
Alignment explanation
Indices: 61031550--61031775 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
61031540 TCGAATGATG
* * * *
61031550 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
61031590 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
61031630 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
61031670 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
**
61031710 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
61031751 -CCGGGCTATGTTCCGAAGGCATTTG
1 TCCGGACTAAGATCCGAAGGCATTTG
61031776 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 10, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 160 0.94
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61036131 original size:39 final size:40
Alignment explanation
Indices: 61036026--61036171 Score: 208
Period size: 40 Copynumber: 3.7 Consensus size: 40
61036016 TGAATGATAC
* * * *
61036026 CCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
61036065 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
61036105 CCGGGTTAAGA-CCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
61036144 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGTTAAGACCCGAAGGCATTTGTGC
61036172 TTGTGGTTAT
Statistics
Matches: 98, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
39 47 0.48
40 49 0.50
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:61036157 original size:79 final size:79
Alignment explanation
Indices: 61036026--61036171 Score: 213
Period size: 79 Copynumber: 1.8 Consensus size: 79
61036016 TGAATGATAC
* * * * *
61036026 CCGGGCTAAGCCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCATTTGT
1 CCGGGCTAAGACCGAAGGCATTTATGCGAGTGACTATACCCGGGTTAAGACCCGAAGGCAATTGT
61036091 GCGAGTTGCTATAT
66 GCGAGTTGCTATAT
* *
61036105 CCGGGTTAAGACCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCGAAGGCATTTATGCGAG-TGACTATACCCGGGTTAAGACCCGAAGGCAATTG
61036169 TGC
65 TGC
61036172 TTGTGGTTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
79 57 0.97
80 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCGAAGGCATTTATGCGAGTGACTATACCCGGGTTAAGACCCGAAGGCAATTGT
GCGAGTTGCTATAT
Found at i:61036183 original size:79 final size:79
Alignment explanation
Indices: 61036026--61036191 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
61036016 TGAATGATAC
* * * * *
61036026 CCGGGCTAAGCCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCATTTGT
1 CCGGGCTAAGACCGAAGGCATTTATGCGAGTGACTATACCCGGGTTAAGACCCGAAGGCAATTGT
*
61036091 GCGAGTTGCTATAT
66 GCGAGTGGCTATAT
* *
61036105 CCGGGTTAAGACCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCGAAGGCATTTATGCGAG-TGACTATACCCGGGTTAAGACCCGAAGGCAATTG
** *
61036169 TGCTTGTGGTTATAT
65 TGCGAGTGGCTATAT
61036184 CC-GGCTAA
1 CCGGGCTAA
61036192 ATTCCGAAGA
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
78 5 0.07
79 67 0.91
80 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCGAAGGCATTTATGCGAGTGACTATACCCGGGTTAAGACCCGAAGGCAATTGT
GCGAGTGGCTATAT
Found at i:61043115 original size:40 final size:40
Alignment explanation
Indices: 61043007--61043216 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
61042997 CGGGATTTAA
* * * * *
61043007 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
61043047 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61043087 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61043127 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61043167 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61043207 CCGGATATAT
1 CCGGATATAT
61043217 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:61051248 original size:40 final size:40
Alignment explanation
Indices: 61051140--61051349 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
61051130 CGGGATTTAA
* * * * *
61051140 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
61051180 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61051220 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61051260 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61051300 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
61051340 CCGGATATAT
1 CCGGATATAT
61051350 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:61057691 original size:43 final size:43
Alignment explanation
Indices: 61057629--61057714 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
61057619 ATCACCTTCA
* *
61057629 ATGCCAACGTATTAAACGTGGTCTTACTCAT-ACACACATATCG
1 ATGCCAACATATTAAACGTGGTCTTACTC-TCACAAACATATCG
*
61057672 ATGCCAACATATTAGACGTGGTCTTACTCTCACAAACATATCG
1 ATGCCAACATATTAAACGTGGTCTTACTCTCACAAACATATCG
61057715 TAATCACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
42 1 0.03
43 38 0.97
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
ATGCCAACATATTAAACGTGGTCTTACTCTCACAAACATATCG
Found at i:61057763 original size:99 final size:100
Alignment explanation
Indices: 61057593--61057909 Score: 304
Period size: 112 Copynumber: 3.1 Consensus size: 100
61057583 TCCCAAATAA
* * * * *
61057593 GGTCTTACTCGTA-AATACATATCAGAATCACCTTC-AATGCCAACGTATTAAACGTGGTCTTAC
1 GGTCTTACTCGCACAA-ACATATTAGAATCACATACTGATGCCAACGTATTAAACGTGGTCTTAC
*
61057656 TCATACA-CACATATCGATGCCAACATATTAGACGT
65 TCGTACATCACATATCGATGCCAACATATTAGACGT
* *
61057691 GGTCTTACTCTCACAAACATA-TCGTAATCACATA-TCGATGCCAACGTATTAAACGTGGTCTTA
1 GGTCTTACTCGCACAAACATATTAG-AATCACATACT-GATGCCAACGTATTAAACGTGGTCTTA
* * *
61057754 CTTGCACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
64 C-T-------CGTA-C---ATCACATATCGATGCCAACATATTAGACGT
* * *
61057803 GGTCTTACTCGCACACATATATTAGAATCACATACTGATGCCAATGTATTAAACGTGGTCTTACT
1 GGTCTTACTCGCACAAACATATTAGAATCACATACTGATGCCAACGTATTAAACGTGGTCTTACT
***
61057868 CGTA-ATCACATATCGATGCCAACATCCCAGACGT
66 CGTACATCACATATCGATGCCAACATATTAGACGT
61057902 GGTCTTAC
1 GGTCTTAC
61057910 ACGTAATCTG
Statistics
Matches: 180, Mismatches: 20, Indels: 37
0.76 0.08 0.16
Matches are distributed among these distances:
97 1 0.01
98 23 0.13
99 62 0.34
100 1 0.01
104 3 0.02
107 4 0.02
108 1 0.01
111 2 0.01
112 80 0.44
113 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.28
Consensus pattern (100 bp):
GGTCTTACTCGCACAAACATATTAGAATCACATACTGATGCCAACGTATTAAACGTGGTCTTACT
CGTACATCACATATCGATGCCAACATATTAGACGT
Found at i:61057869 original size:56 final size:56
Alignment explanation
Indices: 61057663--61057883 Score: 304
Period size: 56 Copynumber: 3.9 Consensus size: 56
61057653 TACTCATACA
* * * * *
61057663 CACATATCGATGCCAACATATTAGACGTGGTCTTACTCTCACAAACATATCGTAAT
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGAAAT
*
61057719 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTTGCACACACATATCGAAAT
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGAAAT
* *
61057775 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATAT-TAGAAT
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGA-AAT
* *
61057831 CACATA-CTGATGCCAATGTATTAAACGTGGTCTTACTCGTA-ATCACATATCGA
1 CACATATC-GATGCCAACGTATTAAACGTGGTCTTACTCGCACA-CACATATCGA
61057884 TGCCAACATC
Statistics
Matches: 148, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
55 3 0.02
56 144 0.97
57 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (56 bp):
CACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGAAAT
Found at i:61057889 original size:43 final size:43
Alignment explanation
Indices: 61057855--61058012 Score: 226
Period size: 43 Copynumber: 3.7 Consensus size: 43
61057845 AATGTATTAA
* *
61057855 ACGTGGTCTTACTCGTAATCACATATCGATGCCAACATCCCAG
1 ACGTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAG
** *
61057898 ACGTGGTCTTACACGTAATCTGATATCGATGCCAACGTCCTAG
1 ACGTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAG
* * *
61057941 ACGTTGTCTTACACGTAATCACATATCGACGCCAATGTCCCAG
1 ACGTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAG
* *
61057984 ACGTGGACGTACACGTAATCACATATCGA
1 ACGTGGTCTTACACGTAATCACATATCGA
61058013 AAATCCTATG
Statistics
Matches: 101, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (43 bp):
ACGTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAG
Found at i:61057984 original size:86 final size:86
Alignment explanation
Indices: 61057828--61058012 Score: 237
Period size: 86 Copynumber: 2.2 Consensus size: 86
61057818 CATATATTAG
* ** * * *
61057828 AATCACATA-CTGATGCCAATGTATTAAACGTGGTCTTACTCGTAATCACATATCGATGCCAACA
1 AATCACATATC-GATGCCAACGTCCTAGACGTGGTCTTACACGTAATCACATATCGACGCCAACA
* *
61057892 TCCCAGACGTGGTCTTACACGT
65 TCCCAGACGTGGACGTACACGT
** * **
61057914 AATCTGATATCGATGCCAACGTCCTAGACGTTGTCTTACACGTAATCACATATCGACGCCAATGT
1 AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACACGTAATCACATATCGACGCCAACAT
61057979 CCCAGACGTGGACGTACACGT
66 CCCAGACGTGGACGTACACGT
61058000 AATCACATATCGA
1 AATCACATATCGA
61058013 AAATCCTATG
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
86 82 0.99
87 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (86 bp):
AATCACATATCGATGCCAACGTCCTAGACGTGGTCTTACACGTAATCACATATCGACGCCAACAT
CCCAGACGTGGACGTACACGT
Found at i:61059486 original size:26 final size:26
Alignment explanation
Indices: 61059403--61059537 Score: 170
Period size: 26 Copynumber: 5.3 Consensus size: 26
61059393 CTGGAGGCCT
61059403 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
61059427 AGCCCTTTTCGGTAAGCTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
61059452 AGCCCTTTTCAATAAACTGAGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
***
61059478 AGCCCTTTTTGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
61059504 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
61059530 AGCCCTTT
1 AGCCCTTT
61059538 GCACTTCCTC
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 30 0.32
26 54 0.57
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:61059528 original size:52 final size:51
Alignment explanation
Indices: 61059403--61059537 Score: 204
Period size: 52 Copynumber: 2.7 Consensus size: 51
61059393 CTGGAGGCCT
*
61059403 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAGCTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
* *
61059452 AGCCCTTTTCAATAAACTGAGGCATAAGCCCTTTTTGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-A
61059504 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTT
61059538 GCACTTCCTC
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 9 0.12
51 23 0.29
52 34 0.44
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:61060923 original size:15 final size:15
Alignment explanation
Indices: 61060903--61060950 Score: 75
Period size: 15 Copynumber: 3.4 Consensus size: 15
61060893 CTAACTAAAA
61060903 CCCCTCTACTGAAAT
1 CCCCTCTACTGAAAT
61060918 CCCCTCTACTGAAAT
1 CCCCTCTACTGAAAT
61060933 CCCCTCT-CT--AAT
1 CCCCTCTACTGAAAT
61060945 CCCCTC
1 CCCCTC
61060951 AATTCAGCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
12 9 0.27
14 2 0.06
15 22 0.67
ACGTcount: A:0.21, C:0.48, G:0.04, T:0.27
Consensus pattern (15 bp):
CCCCTCTACTGAAAT
Found at i:61060947 original size:12 final size:14
Alignment explanation
Indices: 61060896--61060950 Score: 69
Period size: 15 Copynumber: 3.9 Consensus size: 14
61060886 AAAATCCCTA
*
61060896 ACTAAAACCCCTCT
1 ACTAAATCCCCTCT
61060910 ACTGAAATCCCCTCT
1 ACT-AAATCCCCTCT
61060925 ACTGAAATCCCCTCT
1 ACT-AAATCCCCTCT
61060940 -CT-AATCCCCTC
1 ACTAAATCCCCTC
61060951 AATTCAGCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
12 9 0.23
14 5 0.13
15 25 0.64
ACGTcount: A:0.27, C:0.44, G:0.04, T:0.25
Consensus pattern (14 bp):
ACTAAATCCCCTCT
Found at i:61064449 original size:34 final size:34
Alignment explanation
Indices: 61064365--61064457 Score: 102
Period size: 34 Copynumber: 2.7 Consensus size: 34
61064355 GCATTATTGA
* *
61064365 TACTA-TACTGAAATGGGTTAAGGCCCACACTAT
1 TACTACTACTGGAATGGGCTAAGGCCCACACTAT
* *
61064398 TACTGCTACTGTAATGGGCTAAGGCCCACACTGA-
1 TACTACTACTGGAATGGGCTAAGGCCCACACT-AT
61064432 TACTACTA-TGGATATGGGCTTAAGGC
1 TACTACTACTGGA-ATGGGC-TAAGGC
61064458 TAGACTGGTC
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
33 7 0.14
34 37 0.73
35 7 0.14
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (34 bp):
TACTACTACTGGAATGGGCTAAGGCCCACACTAT
Found at i:61067075 original size:54 final size:55
Alignment explanation
Indices: 61066892--61067086 Score: 209
Period size: 55 Copynumber: 3.6 Consensus size: 55
61066882 CTTACCATTT
* * * * * *
61066892 CCATGTCTTGACAAGGTCTTACGTGGTATCCTTGCCTTAT-G-AACTCACCAATG
1 CCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAAACTCATCAATG
** * *
61066945 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTCATCAATG
1 CCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATAGAAACTCATCAATG
* * * * *
61067000 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA-AAATTTATCAATG
1 CCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAAACTCATCAATG
*
61067054 TCATGCCTTGGCATGGTCTTACATGATATCCTT
1 CCATGCCTTGGCATGGTCTTACATGATATCCTT
61067087 ATCTTACCAA
Statistics
Matches: 118, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.02
53 31 0.26
54 40 0.34
55 43 0.36
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (55 bp):
CCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAAACTCATCAATG
Found at i:61067116 original size:47 final size:47
Alignment explanation
Indices: 61067064--61067186 Score: 165
Period size: 47 Copynumber: 2.6 Consensus size: 47
61067054 TCATGCCTTG
* *
61067064 GCATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTCCCAA
1 GCATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTCCCAA
* * *
61067111 GCATGGTCTTACATGGTATCCTTGTCTTGCCAAATGTCATGTTCCAA
1 GCATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTCCCAA
* * * *
61067158 ACATAGTCTTATAAGGTATCCTTGTCTTA
1 GCATGGTCTTACATGGTATCCTTGTCTTA
61067187 GTGCCAATGC
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (47 bp):
GCATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTCCCAA
Found at i:61073015 original size:40 final size:39
Alignment explanation
Indices: 61072888--61073017 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 39
61072878 ATGCTGGAAA
*
61072888 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCG-G
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-A-CGTG
* * *
61072928 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGT-G
*
61072968 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTG
61073007 TTTATATCCGG
1 -TTATATCCGG
61073018 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
38 1 0.01
39 5 0.06
40 71 0.92
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTG
Found at i:61074787 original size:23 final size:23
Alignment explanation
Indices: 61074757--61074803 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
61074747 ATAAATTTGC
*
61074757 TTCAAGCAACTTAACATGTACGT
1 TTCAAGCAACTTAACATGCACGT
61074780 TTCAAGCAACTTAACATGCACGT
1 TTCAAGCAACTTAACATGCACGT
61074803 T
1 T
61074804 CATAATACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (23 bp):
TTCAAGCAACTTAACATGCACGT
Found at i:61083344 original size:48 final size:48
Alignment explanation
Indices: 61083286--61084182 Score: 1427
Period size: 48 Copynumber: 18.5 Consensus size: 48
61083276 ATATACACAC
* *
61083286 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
61083334 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
61083382 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
61083430 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
61083478 ATCTCATACATATTTCACATTAGCCATTTAGCTTTACCACATACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT--ATACAT
* *
61083528 TTCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACA-
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
61083575 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
61083623 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
61083673 TTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
61083721 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
* * *
61083771 TTCTCATACATATGTCACATTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
61083819 ATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
* * *
61083869 TTCTCATACATATGTCACATTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
61083917 ATCTCATATATATTTTACAGTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
61083965 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
* *
61084015 TTCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
61084063 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
61084111 ATCTCATAAATATTTCACATTAGCCATTCGGCTTTACCACATATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACAT
*
61084161 TTCTCATACATATTTCACATTA
1 ATCTCATACATATTTCACATTA
61084183 TTCACTACAA
Statistics
Matches: 788, Mismatches: 48, Indels: 24
0.92 0.06 0.03
Matches are distributed among these distances:
47 44 0.06
48 492 0.62
50 252 0.32
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Done.