Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 205 of 335
Found at i:61083717 original size:98 final size:96
Alignment explanation
Indices: 61083286--61084182 Score: 1427
Period size: 98 Copynumber: 9.2 Consensus size: 96
61083276 ATATACACAC
* *
61083286 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
61083351 CATTAGCCATTCAGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
61083382 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
61083447 CATTAGCCATTCGGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
** *
61083478 ATCTCATACATATTTCACATTAGCCATTTAGCTTTACCACATACATACATTTCTCATACATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACAT--ATACATATCTCATACATATTT
*
61083543 CACATTAGCCATTCGGCTTTACCGCATATACA-
64 CACATTAGCCATTCGGCTTTACCACATATACAT
*
61083575 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
61083640 CATTAGCCATTCGGCTTTACCACATATATACAT
66 CATTAGCCATTCGGCTTTACCAC--ATATACAT
*
61083673 TTCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
61083738 CAGTAGCCATTCGGCTTTACCACATATATACAT
66 CATTAGCCATTCGGCTTTACCAC--ATATACAT
* * *
61083771 TTCTCATACATATGTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
61083836 CAGTAGCCATTCGGCTTTACCACATATATACAT
66 CATTAGCCATTCGGCTTTACCAC--ATATACAT
* * * * *
61083869 TTCTCATACATATGTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATATATATTTTA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
61083934 CAGTAGCCATTCGGCTTTACCGCATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
* *
61083965 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTT
*
61084030 CACATTAGCCATTCGGCTTTACCGCATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
* * *
61084063 ATCTCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATAAATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
61084128 CATTAGCCATTCGGCTTTACCACATATATACAT
66 CATTAGCCATTCGGCTTTACCAC--ATATACAT
*
61084161 TTCTCATACATATTTCACATTA
1 ATCTCATACATATTTCACATTA
61084183 TTCACTACAA
Statistics
Matches: 757, Mismatches: 35, Indels: 16
0.94 0.04 0.02
Matches are distributed among these distances:
95 44 0.06
96 222 0.29
97 46 0.06
98 445 0.59
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (96 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACAT
Found at i:61083824 original size:146 final size:145
Alignment explanation
Indices: 61083271--61084182 Score: 1436
Period size: 146 Copynumber: 6.2 Consensus size: 145
61083261 GGTCATTCAG
* * *
61083271 CCACAATATACACACATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
1 CCACAATAT--ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
*
61083336 CTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACA
64 CTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
61083401 TTAGCCATTCGGCTTTA
129 TTAGCCATTCGGCTTTA
61083418 CCAC-ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 CCACAATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
** *
61083482 CATACATATTTCACATTAGCCATTTAGCTTTACCACATACATACATTTCTCATACATATTTCACA
66 CATACATATTTCACATTAGCCATTCGGCTTTACCACAT--ATACATATCTCATACATATTTCACA
61083547 TTAGCCATTCGGCTTTA
129 TTAGCCATTCGGCTTTA
* *
61083564 CCGC-ATATACA-ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 CCACAATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
*
61083627 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATATACATTTCTCATACATATTTCACA
66 CATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTTCACA
61083692 TTAGCCATTCGGCTTTA
129 TTAGCCATTCGGCTTTA
* *
61083709 CCAC-ATATACATATCTCATACATATTTCACAGTAGCCATTCGGCTTTACCACATATATACATTT
1 CCACAATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--ATATACATAT
* *
61083773 CTCATACATATGTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACA
64 CTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
*
61083838 GTAGCCATTCGGCTTTA
129 TTAGCCATTCGGCTTTA
* * *
61083855 CCACATATATACATTTCTCATACATATGTCACATTAGCCATTCGGCTTTACCGCATATACATATC
1 CCACA-ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
* * * * *
61083920 TCATATATATTTTACAGTAGCCATTCGGCTTTACCGCATATACATATCTCATATATATTTCACAT
65 TCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
61083985 TAGCCATTCGGCTTTA
130 TAGCCATTCGGCTTTA
* *
61084001 CCACATATATACATTTCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATC
1 CCACA-ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
* * *
61084066 TCATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATAAATATTTCACAT
65 TCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
61084131 TAGCCATTCGGCTTTA
130 TAGCCATTCGGCTTTA
*
61084147 CCACATATATACATTTCTCATACATATTTCACATTA
1 CCACA-ATATACATATCTCATACATATTTCACATTA
61084183 TTCACTACAA
Statistics
Matches: 724, Mismatches: 32, Indels: 19
0.93 0.04 0.02
Matches are distributed among these distances:
144 90 0.12
145 137 0.19
146 402 0.56
147 6 0.01
148 89 0.12
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (145 bp):
CCACAATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
AGCCATTCGGCTTTA
Found at i:61085197 original size:2 final size:2
Alignment explanation
Indices: 61085190--61085224 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
61085180 TTAATCGTTG
61085190 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
61085225 CAGCATTAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:61087221 original size:10 final size:10
Alignment explanation
Indices: 61087208--61087246 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
61087198 ATATATGAAT
61087208 ATATCATGGC
1 ATATCATGGC
61087218 ATATCATGTGC
1 ATATCATG-GC
61087229 ATATCATGGC
1 ATATCATGGC
61087239 ATATCATG
1 ATATCATG
61087247 TATAAAACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:61087234 original size:21 final size:21
Alignment explanation
Indices: 61087208--61087247 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
61087198 ATATATGAAT
61087208 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
61087229 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
61087248 ATAAAACAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:61095874 original size:40 final size:40
Alignment explanation
Indices: 61095746--61095897 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
61095736 ATAATCACGT
* *
61095746 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAAC-CA
*** *
61095786 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATAACCA
* **
61095826 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACCA
* * * *
61095866 GCATAATTGTCTTCGGGGCTTATCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
61095898 CATTCAATTT
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 90 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATAACCA
Found at i:61099292 original size:29 final size:29
Alignment explanation
Indices: 61099260--61099332 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
61099250 CTTCGAGCTC
*
61099260 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
61099289 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
61099318 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
61099333 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:61106573 original size:29 final size:29
Alignment explanation
Indices: 61106541--61106613 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
61106531 CTTCGAGCTC
*
61106541 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
61106570 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
61106599 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
61106614 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:61108958 original size:46 final size:46
Alignment explanation
Indices: 61108891--61109060 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
61108881 TGTAACCCGC
* *
61108891 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTAT
* *
61108937 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTA--T
* *** * ** *
61108983 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTAT
61109030 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
61109061 TTCAGATGCC
Statistics
Matches: 101, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
44 5 0.05
45 2 0.02
46 60 0.59
47 30 0.30
49 4 0.04
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGTAT
Found at i:61109011 original size:93 final size:93
Alignment explanation
Indices: 61108898--61109070 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
61108888 CGCCCATAAG
** *
61108898 CGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
61108963 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCAGATGCCTAGTTACATCTCT
* *
61108991 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
61109056 ACGAGTTCAGATGCC
66 ACGAGCTCAGATGCC
61109071 CAAATATCCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCAGATGCCTAGTTACATCTCT
Found at i:61110808 original size:25 final size:25
Alignment explanation
Indices: 61110780--61110851 Score: 108
Period size: 25 Copynumber: 2.9 Consensus size: 25
61110770 CTCTTTTAAT
*
61110780 AACTGGGGCAAATCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
61110805 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
61110830 AACTAGGGCAAAGCTCTTTTTG
1 AACTGGGGCAAAGCCCTTTTTG
61110852 CACTTCCTCC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:61110909 original size:10 final size:10
Alignment explanation
Indices: 61110896--61110934 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
61110886 ATATATGAAT
61110896 ATATCATGGC
1 ATATCATGGC
61110906 ATATCATGCGC
1 ATATCATG-GC
61110917 ATATCATGGC
1 ATATCATGGC
61110927 ATATCATG
1 ATATCATG
61110935 TATAAAACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (10 bp):
ATATCATGGC
Found at i:61114274 original size:42 final size:42
Alignment explanation
Indices: 61114211--61114342 Score: 140
Period size: 42 Copynumber: 3.1 Consensus size: 42
61114201 GTAATTCAGT
* * *
61114211 ATCGATGCCTCTTTCCCAGACAGGGTCTTACACGAAA-TCAA
1 ATCGATGCCTATGTCCCAGACACGGTCTTACACGAAACTCAA
* *
61114252 ATACGATGCCTATGTCCTAGACATGGTCTTACACGTAAATCTCAA
1 AT-CGATGCCTATGTCCCAGACACGGTCTTACACG-AAA-CTCAA
* * * *
61114297 ATCGAGGCCTGTGTCCCAGACACGATCTTACACGATATCTCAA
1 ATCGATGCCTATGTCCCAGACACGGTCTTACACGA-AACTCAA
61114340 ATC
1 ATC
61114343 AATGTCAACT
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
41 2 0.03
42 28 0.37
43 12 0.16
44 28 0.37
45 6 0.08
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (42 bp):
ATCGATGCCTATGTCCCAGACACGGTCTTACACGAAACTCAA
Found at i:61114326 original size:44 final size:43
Alignment explanation
Indices: 61114224--61114342 Score: 143
Period size: 44 Copynumber: 2.8 Consensus size: 43
61114214 GATGCCTCTT
* *
61114224 TCCCAGACAGGGTCTTACACGAAA--TCAAATACGATGCCTATG
1 TCCCAGACACGGTCTTACACGAAATCTCAAAT-CGAGGCCTATG
* * *
61114266 TCCTAGACATGGTCTTACACGTAAATCTCAAATCGAGGCCTGTG
1 TCCCAGACACGGTCTTACACG-AAATCTCAAATCGAGGCCTATG
* *
61114310 TCCCAGACACGATCTTACACGATATCTCAAATC
1 TCCCAGACACGGTCTTACACGAAATCTCAAATC
61114343 AATGTCAACT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
42 19 0.29
43 14 0.21
44 27 0.41
45 6 0.09
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
TCCCAGACACGGTCTTACACGAAATCTCAAATCGAGGCCTATG
Found at i:61114328 original size:86 final size:85
Alignment explanation
Indices: 61114172--61114331 Score: 196
Period size: 86 Copynumber: 1.9 Consensus size: 85
61114162 AACGGGTACA
** * * * * * *
61114172 ATGCCAATGTCCCAGATGTGGTCTTACATGTAATTCAGTATCGATGCCTCTTTCCCAGACAGGGT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATTCAGAATCGAGGCCTCTGTCCCAGACACGAT
61114237 CTTACACGAAATCAAATACG
66 CTTACACGAAATCAAATACG
* * *
61114257 ATGCCTATGTCCTAGACATGGTCTTACACGTAAATCTCA-AATCGAGGCCTGTGTCCCAGACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGT-AAT-TCAGAATCGAGGCCTCTGTCCCAGACACG
61114321 ATCTTACACGA
64 ATCTTACACGA
61114332 TATCTCAAAT
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 26 0.42
86 33 0.53
87 3 0.05
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (85 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATTCAGAATCGAGGCCTCTGTCCCAGACACGAT
CTTACACGAAATCAAATACG
Found at i:61123443 original size:26 final size:26
Alignment explanation
Indices: 61123414--61123465 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
61123404 ACAAGATAGC
61123414 AAATATTTAGGTATCAAATTAGCCAT
1 AAATATTTAGGTATCAAATTAGCCAT
61123440 AAATATTTAGGTATCAAATTAGCCAT
1 AAATATTTAGGTATCAAATTAGCCAT
61123466 TTTTGCATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (26 bp):
AAATATTTAGGTATCAAATTAGCCAT
Found at i:61124438 original size:86 final size:86
Alignment explanation
Indices: 61124348--61124526 Score: 331
Period size: 86 Copynumber: 2.1 Consensus size: 86
61124338 TCCCCGACAG
61124348 GGTCTTACTCATAATCACATATCGATGCCATTGTCCCAGACAAGGTCTTACTCATAATCACATAT
1 GGTCTTACTCATAATCACATATCGATGCCATTGTCCCAGACAAGGTCTTACTCATAATCACATAT
*
61124413 TGATGCCAATGTATTAAACAT
66 CGATGCCAATGTATTAAACAT
* *
61124434 GGTCTTACTCGTAATCACATATCGATGCCATTGTCCCAGACAAGGTCTTACTCGTAATCACATAT
1 GGTCTTACTCATAATCACATATCGATGCCATTGTCCCAGACAAGGTCTTACTCATAATCACATAT
61124499 CGATGCCAATGTATTAAACAT
66 CGATGCCAATGTATTAAACAT
61124520 GGTCTTA
1 GGTCTTA
61124527 TTCGCACACA
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 90 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (86 bp):
GGTCTTACTCATAATCACATATCGATGCCATTGTCCCAGACAAGGTCTTACTCATAATCACATAT
CGATGCCAATGTATTAAACAT
Found at i:61124526 original size:43 final size:43
Alignment explanation
Indices: 61124286--61124510 Score: 272
Period size: 43 Copynumber: 5.2 Consensus size: 43
61124276 ATATCATACA
* * *
61124286 ATGCCAACGTCCCTGACGTGGTCTTACAT-GTAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTAC-TCGTAATCACATATCG
* * * * *
61124329 ATGCCACTATCCCCGACAGGGTCTTACTCATAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACTCGTAATCACATATCG
* * * *
61124372 ATGCCATTGTCCCAGACAAGGTCTTACTCATAATCACATATTG
1 ATGCCAATGTCCCAGACATGGTCTTACTCGTAATCACATATCG
*** *
61124415 ATGCCAATGTATTAAACATGGTCTTACTCGTAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACTCGTAATCACATATCG
* *
61124458 ATGCCATTGTCCCAGACAAGGTCTTACTCGTAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACTCGTAATCACATATCG
61124501 ATGCCAATGT
1 ATGCCAATGT
61124511 ATTAAACATG
Statistics
Matches: 154, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
42 1 0.01
43 153 0.99
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACTCGTAATCACATATCG
Found at i:61124539 original size:43 final size:43
Alignment explanation
Indices: 61124304--61124544 Score: 225
Period size: 43 Copynumber: 5.6 Consensus size: 43
61124294 GTCCCTGACG
* * *****
61124304 TGGTCTTACAT-GTAATCACATATCGATGCCACTATCCCCGACA
1 TGGTCTTAC-TCGTAATCACATATCGATGCCAATGTATTAAACA
* * * *** *
61124347 GGGTCTTACTCATAATCACATATCGATGCCATTGTCCCAGACA
1 TGGTCTTACTCGTAATCACATATCGATGCCAATGTATTAAACA
* * *
61124390 AGGTCTTACTCATAATCACATATTGATGCCAATGTATTAAACA
1 TGGTCTTACTCGTAATCACATATCGATGCCAATGTATTAAACA
* *** *
61124433 TGGTCTTACTCGTAATCACATATCGATGCCATTGTCCCAGACA
1 TGGTCTTACTCGTAATCACATATCGATGCCAATGTATTAAACA
*
61124476 AGGTCTTACTCGTAATCACATATCGATGCCAATGTATTAAACA
1 TGGTCTTACTCGTAATCACATATCGATGCCAATGTATTAAACA
* *
61124519 TGGTCTTATTCGCACA-CACATATCGA
1 TGGTCTTACTCGTA-ATCACATATCGA
61124545 AATCACATAT
Statistics
Matches: 167, Mismatches: 29, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
42 1 0.01
43 165 0.99
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (43 bp):
TGGTCTTACTCGTAATCACATATCGATGCCAATGTATTAAACA
Found at i:61124582 original size:56 final size:56
Alignment explanation
Indices: 61124489--61124601 Score: 145
Period size: 56 Copynumber: 2.0 Consensus size: 56
61124479 TCTTACTCGT
* ** * *
61124489 AATCACATATCGATGCCAATGTATTAAACATGGTCTTATTCGCACACACATATCGA
1 AATCACATATCGATGCCAACGTATTAAACATAATCTTACTCACACACACATATCGA
* ** *
61124545 AATCACATATTGATGCCAACGTATTAAATGTAATCTTACTCACACACATATATCGA
1 AATCACATATCGATGCCAACGTATTAAACATAATCTTACTCACACACACATATCGA
61124601 A
1 A
61124602 GCCATGGCCT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAACATAATCTTACTCACACACACATATCGA
Found at i:61128604 original size:39 final size:39
Alignment explanation
Indices: 61128561--61128727 Score: 262
Period size: 39 Copynumber: 4.3 Consensus size: 39
61128551 CATGGTATTT
* * *
61128561 GAAATATATCCGGACATGAGGACCGTAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCTGCAGGCTATATGCTG
* *
61128600 GAAATATATTCGGACATGAGGTCTGTAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCTGCAGGCTATATGCTG
*
61128639 GAAATATATCCGGACATGAAGTCTGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCTGCAGGCTATATGCTG
* *
61128678 GGAATGTATCCGGACATGAGGTCTGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCTGCAGGCTATATGCTG
61128717 GAAATATATCC
1 GAAATATATCC
61128728 AGACTTGAAG
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 117 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (39 bp):
GAAATATATCCGGACATGAGGTCTGCAGGCTATATGCTG
Found at i:61128755 original size:78 final size:78
Alignment explanation
Indices: 61128561--61128760 Score: 231
Period size: 78 Copynumber: 2.6 Consensus size: 78
61128551 CATGGTATTT
* * * * * * * * * * *
61128561 GAAATATATCCGGACATGAGGACCGTAGGCTATATGCTGGAAATATATTCGGACATGAGGTCTGT
1 GAAATATATCCAGACATGAAGTCCGCAAGCCACATGCTGGGAATGTATCCGGACATGAGGTCTGC
61128626 AGGCTATATGCTG
66 AGGCTATATGCTG
* * * * *
61128639 GAAATATATCCGGACATGAAGTCTGCAGGCTATATGCTGGGAATGTATCCGGACATGAGGTCTGC
1 GAAATATATCCAGACATGAAGTCCGCAAGCCACATGCTGGGAATGTATCCGGACATGAGGTCTGC
61128704 AGGCTATATGCTG
66 AGGCTATATGCTG
* *
61128717 GAAATATATCCAGACTTGAAGTCCGCAAGCCACGTGCT-GGAATG
1 GAAATATATCCAGACATGAAGTCCGCAAGCCACATGCTGGGAATG
61128761 GTATACGGGG
Statistics
Matches: 107, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
77 6 0.06
78 101 0.94
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (78 bp):
GAAATATATCCAGACATGAAGTCCGCAAGCCACATGCTGGGAATGTATCCGGACATGAGGTCTGC
AGGCTATATGCTG
Found at i:61135051 original size:34 final size:34
Alignment explanation
Indices: 61134993--61135073 Score: 112
Period size: 34 Copynumber: 2.4 Consensus size: 34
61134983 AGTAGTTTTT
* *
61134993 TTTCAGTAACAGTAGCAGTCTAGGCCTTAGCGCA
1 TTTCAGTAATAGTAGCAGTCTAGGCCTTAGCCCA
*
61135027 TTTCAGTAATAG-AGACAGTTTAGGCCTTAGCCCA
1 TTTCAGTAATAGTAG-CAGTCTAGGCCTTAGCCCA
61135061 TTTCAG-AATAGTA
1 TTTCAGTAATAGTA
61135074 AGCAAGCAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
33 7 0.17
34 35 0.83
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (34 bp):
TTTCAGTAATAGTAGCAGTCTAGGCCTTAGCCCA
Found at i:61142416 original size:39 final size:39
Alignment explanation
Indices: 61142334--61142524 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
61142324 TTGAATGATG
* * * * *
61142334 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
*
61142374 TCCGGACT-AGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
61142413 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
61142452 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
61142493 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
61142525 CGTTATATCC
Statistics
Matches: 127, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
39 58 0.46
40 67 0.53
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:61142469 original size:79 final size:80
Alignment explanation
Indices: 61142334--61142524 Score: 230
Period size: 79 Copynumber: 2.4 Consensus size: 80
61142324 TTGAATGATG
* * *
61142334 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAGATCCGAAGGCATTC
61142398 GTGCGAGTTAATA-AA
65 GTGCGAGTTAATATAA
* **
61142413 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTA-AGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAGA-T-CCGAAGGCATT
*
61142476 CGTGCGAGTTACTATAA
64 CGTGCGAGTTAATATAA
** *
61142493 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
61142525 CGTTATATCC
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
77 1 0.01
78 24 0.25
79 50 0.52
80 22 0.23
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAGATCCGAAGGCATTCG
TGCGAGTTAATATAA
Found at i:61142481 original size:40 final size:39
Alignment explanation
Indices: 61142386--61142524 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 39
61142376 CGGACTAGAT
* *
61142386 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
61142425 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-CCGGGTTAAGTC
*
61142465 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGCTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCGGG-TTAAGTC
* *
61142505 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
61142525 CGTTATATCC
Statistics
Matches: 89, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.38
40 51 0.57
41 4 0.04
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:61150445 original size:79 final size:81
Alignment explanation
Indices: 61150310--61150493 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
61150300 TCGAATGATG
* *
61150310 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAGATCCGAAGGCATTC
*
61150374 GTGCGAGTTAATA-AA
66 GTGCGAGTCAATATAA
* **
61150389 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTA-AGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAGA-T-CCGAAGGCAT
*
61150451 TCGTGCGAGTCACTATAA
64 TCGTGCGAGTCAATATAA
**
61150469 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61150494 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
77 1 0.01
78 25 0.27
79 49 0.54
80 16 0.18
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAGATCCGAAGGCATTC
GTGCGAGTCAATATAA
Found at i:61150450 original size:40 final size:40
Alignment explanation
Indices: 61150310--61150493 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
61150300 TCGAATGATG
* *
61150310 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * *
61150350 TCCGGACT-AGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
61150389 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
61150428 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
61150469 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61150494 AGCGAGTCGT
Statistics
Matches: 119, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 57 0.48
40 60 0.50
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:61150524 original size:79 final size:79
Alignment explanation
Indices: 61150310--61150526 Score: 190
Period size: 79 Copynumber: 2.7 Consensus size: 79
61150300 TCGAATGATG
* * * * ** *
61150310 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGA-TCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTAAATTCCGAAGGCATT
*
61150373 CGTGCGAGTTAATAAA
64 CGTGCGAGTCAATAAA
* * * *
61150389 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
61150454 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
61150469 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
61150527 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
78 24 0.21
79 63 0.56
80 26 0.23
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:61155938 original size:40 final size:38
Alignment explanation
Indices: 61155889--61156032 Score: 137
Period size: 40 Copynumber: 3.7 Consensus size: 38
61155879 TGCTGGAAAT
* * *
61155889 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTCG
*
61155928 CTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCAT
1 -TATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AGTC-G
* * *
61155969 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAATCG
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTCG
* * *
61156007 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
61156033 CTTGGTGCGG
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 26 0.30
40 58 0.67
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTCG
Found at i:61156059 original size:79 final size:81
Alignment explanation
Indices: 61155890--61156072 Score: 194
Period size: 79 Copynumber: 2.3 Consensus size: 81
61155880 GCTGGAAATT
* * *
61155890 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCA
*
61155955 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * *
61155971 -TATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCTAATCGCT-ATATCCGGGCTAAGACCCGAAGGC
* * * *
61156033 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* *
61156049 ATAACCGGGCTATGTCCCGAAGGC
1 ATAACCGGGCTAAGACCCGAAGGC
61156073 GTTGAACGAG
Statistics
Matches: 84, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
78 2 0.02
79 54 0.64
80 28 0.33
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:61157936 original size:29 final size:29
Alignment explanation
Indices: 61157875--61157964 Score: 146
Period size: 29 Copynumber: 3.1 Consensus size: 29
61157865 CACATACCTA
*
61157875 TATATGGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
61157903 TATATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
61157932 TATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
61157961 TATA
1 TATA
61157965 GTCATGCTCA
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
28 18 0.31
29 40 0.69
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:61160104 original size:40 final size:40
Alignment explanation
Indices: 61160049--61160273 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
61160039 TATTCGGATG
*
61160049 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
61160089 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
61160129 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTACT
* * *
61160172 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
61160212 ACATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
61160252 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
61160274 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 14 0.09
40 112 0.70
43 35 0.22
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:61160205 original size:83 final size:80
Alignment explanation
Indices: 61160049--61160273 Score: 362
Period size: 83 Copynumber: 2.8 Consensus size: 80
61160039 TATTCGGATG
*
61160049 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
61160114 TTTGTGCTAGTGACT
66 TTTGTGCTAGTGACT
* *
61160129 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCTATATCCGGGCTAAGTCCCGAAG
61160194 GCATTTGTGCTAGTGACT
63 GCATTTGTGCTAGTGACT
* * *
61160212 ACATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
61160274 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
79 15 0.11
80 43 0.32
81 1 0.01
82 1 0.01
83 74 0.55
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:61162446 original size:31 final size:31
Alignment explanation
Indices: 61162408--61162471 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
61162398 CCTTTTCATA
61162408 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
61162439 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
61162470 TT
1 TT
61162472 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:61162790 original size:23 final size:24
Alignment explanation
Indices: 61162663--61162805 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
61162653 GCTTTATCAT
* *
61162663 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
61162688 ATAACTGGGGCAAAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
61162712 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
61162736 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
61162760 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
61162783 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
61162806 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 22 0.20
24 77 0.69
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:61162879 original size:20 final size:20
Alignment explanation
Indices: 61162851--61162920 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
61162841 GCATTTATGA
*
61162851 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
61162871 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
61162891 ACATGTCATGTG-ATATCAT
1 ACATATCATGTGCATATCAT
61162910 ACATATCATGT
1 ACATATCATGT
61162921 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
19 17 0.36
20 30 0.64
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:61164235 original size:27 final size:27
Alignment explanation
Indices: 61164135--61164218 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
61164125 GGGCATATTC
* *
61164135 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
61164162 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
61164189 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
61164216 GTC
1 GTC
61164219 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:61164310 original size:27 final size:27
Alignment explanation
Indices: 61164280--61164331 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
61164270 GTAAATCAAC
61164280 AAACCAAAGGTATTT-TAGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
61164307 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
61164332 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.42
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:61164401 original size:27 final size:26
Alignment explanation
Indices: 61164371--61164469 Score: 108
Period size: 27 Copynumber: 3.7 Consensus size: 26
61164361 GTAAATCAGG
**
61164371 GGTATTTTGGTAATTTTACAAGTCGAA
1 GGTATTTCAGTAATTTTACAA-TCGAA
*
61164398 GGTATTTCAGTAATTTTACAAATCGAG
1 GGTATTTCAGTAATTTTAC-AATCGAA
* * *
61164425 GGTATTTCAGTATTTTTACAAACTAA
1 GGTATTTCAGTAATTTTACAATCGAA
*
61164451 GGGTATTTCGGTAATTTTA
1 -GGTATTTCAGTAATTTTA
61164470 GTAAACTAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 4 0.07
27 55 0.90
28 2 0.03
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.41
Consensus pattern (26 bp):
GGTATTTCAGTAATTTTACAATCGAA
Found at i:61164421 original size:54 final size:54
Alignment explanation
Indices: 61164336--61164469 Score: 139
Period size: 54 Copynumber: 2.5 Consensus size: 54
61164326 AATTTTTAGA
* * ** **
61164336 AAGTCAAGGGTATTTCTGTAACTTTGTAAATC-AGGGGTATTTTGGTAATTTTAC
1 AAGTCAAGGGTATTTCAGTAATTTTACAAATCGA-GGGTATTTCAGTAATTTTAC
*
61164390 AAGTCGAA-GGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTATTTTTAC
1 AAGTC-AAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
* *
61164444 AA-ACTAAGGGTATTTCGGTAATTTTA
1 AAGTC-AAGGGTATTTCAGTAATTTTA
61164470 GTAAACTAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
53 3 0.04
54 61 0.91
55 3 0.04
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
AAGTCAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTAC
Found at i:61164483 original size:27 final size:27
Alignment explanation
Indices: 61164380--61164484 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
61164370 GGGTATTTTG
* *
61164380 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
61164407 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
61164434 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
61164461 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
61164485 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:61167158 original size:31 final size:31
Alignment explanation
Indices: 61167120--61167183 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
61167110 CCTTTTCATA
61167120 TTTCATATTTCATAATACTGGGCCAAAGCCT
1 TTTCATATTTCATAATACTGGGCCAAAGCCT
* *
61167151 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCAAAGCCT
61167182 TT
1 TT
61167184 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCAAAGCCT
Found at i:61167427 original size:24 final size:24
Alignment explanation
Indices: 61167375--61167494 Score: 172
Period size: 24 Copynumber: 5.0 Consensus size: 24
61167365 GCTTTATCAT
* *
61167375 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
61167400 ATAACTGGGGCAAAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
61167424 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
61167448 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
61167471 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
61167495 CACTTCCTCC
Statistics
Matches: 87, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.25
24 53 0.61
25 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:61167452 original size:48 final size:47
Alignment explanation
Indices: 61167375--61167494 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 47
61167365 GCTTTATCAT
* * *
61167375 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTG
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCC-TTTA
*
61167424 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTA
61167471 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
61167495 CACTTCCTCC
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 27 0.41
48 27 0.41
49 12 0.18
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTA
Found at i:61167567 original size:20 final size:20
Alignment explanation
Indices: 61167539--61167609 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
61167529 GCATTTATGA
*
61167539 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
61167559 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
61167579 ACATGTCATGTGCATATAAT
1 ACATATCATGTGCATATCAT
61167599 ACATATCATGT
1 ACATATCATGT
61167610 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:61168860 original size:27 final size:27
Alignment explanation
Indices: 61168760--61168843 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
61168750 GGGCATATTC
* *
61168760 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
*
61168787 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
61168814 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
61168841 GTC
1 GTC
61168844 TTTTTACCTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:61168935 original size:27 final size:27
Alignment explanation
Indices: 61168909--61169066 Score: 95
Period size: 27 Copynumber: 5.8 Consensus size: 27
61168899 ATCAACAAAC
*
61168909 CAAAGGTATTTTAGTAATTTTGTAAAC
1 CAAAGGTATTTTAGTAATTTTGTAAAT
*
61168936 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAAGGTATTT-TAGTAATTTTGT--AAA-T
* * *
61168965 CAAGGGTATTTTTGTAACTTTGTAAAT
1 CAAAGGTATTTTAGTAATTTTGTAAAT
** * ** *
61168992 CAGGGGTATTTTGGTAATTTTACAAGT
1 CAAAGGTATTTTAGTAATTTTGTAAAT
* * **
61169019 CGAAGGTATTTCAGTAATTTTACAAAT
1 CAAAGGTATTTTAGTAATTTTGTAAAT
* * * *
61169046 CGAGGGTATTTCAGTATTTTT
1 CAAAGGTATTTTAGTAATTTT
61169067 ACAAACTAAG
Statistics
Matches: 106, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
26 1 0.01
27 79 0.75
28 9 0.08
29 16 0.15
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
CAAAGGTATTTTAGTAATTTTGTAAAT
Found at i:61169067 original size:27 final size:27
Alignment explanation
Indices: 61168995--61169094 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
61168985 TGTAAATCAG
** *
61168995 GGGTATTTTGGTAATTTTACAAGTCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
61169022 AGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
61169049 GGGTATTTCAGTATTTTTACAAA-CTAA
1 GGGTATTTCAGTAATTTTACAAATC-GA
*
61169076 GGGTATTTCGGTAATTTTA
1 GGGTATTTCAGTAATTTTA
61169095 GTAAACTAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.02
27 62 0.98
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:61169108 original size:27 final size:27
Alignment explanation
Indices: 61169005--61169109 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
61168995 GGGTATTTTG
* *
61169005 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
61169032 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
61169059 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
61169086 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
61169110 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:61169993 original size:46 final size:46
Alignment explanation
Indices: 61169941--61170098 Score: 180
Period size: 46 Copynumber: 3.4 Consensus size: 46
61169931 GGGTGTTACA
*
61169941 GGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTC
* * *
61169987 GGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-CGAACTC
1 GGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCATAAGTGAACTC
* * *
61170034 GGACTCAACTCAACGAGTTCAGACGCTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTC
61170080 GGACTCAACTCAACGAGTT
1 GGACTCAACTCAACGAGTT
61170099 TGGATGCCCA
Statistics
Matches: 93, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 46 0.49
47 27 0.29
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
GGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGTGAACTC
Found at i:61170121 original size:46 final size:45
Alignment explanation
Indices: 61169978--61170121 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
61169968 CGCATCCATA
* *
61169978 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * * *
61170026 A-CGAACTCGGACTCAACTCAACGAGTTCAGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
* *
61170071 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
61170117 AGTGA
1 AGTGA
61170122 CATGTCACTT
Statistics
Matches: 75, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 35 0.47
47 30 0.40
48 5 0.07
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:61172524 original size:30 final size:30
Alignment explanation
Indices: 61172480--61172568 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
61172470 CAAAGATAAC
61172480 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
61172509 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
61172539 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
61172569 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:61172528 original size:15 final size:15
Alignment explanation
Indices: 61172480--61172559 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
61172470 CAAAGATAAC
*
61172480 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
61172494 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
61172509 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
61172524 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
61172539 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
61172554 AAGAAA
1 AAGAAA
61172560 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:61172568 original size:15 final size:15
Alignment explanation
Indices: 61172491--61172568 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
61172481 AGAAAACCGA
61172491 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
61172506 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
61172520 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
61172535 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
61172551 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
61172566 ATA
1 ATA
61172569 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:61175635 original size:93 final size:93
Alignment explanation
Indices: 61175523--61175694 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61175513 GCCCATAAGT
* *
61175523 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61175588 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
61175616 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61175681 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
61175695 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61175690 original size:46 final size:46
Alignment explanation
Indices: 61175515--61175690 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
61175505 TGTAACCCGC
* * *
61175515 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
61175561 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
61175611 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
61175654 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61175691 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:61184873 original size:40 final size:40
Alignment explanation
Indices: 61184818--61185082 Score: 327
Period size: 40 Copynumber: 6.6 Consensus size: 40
61184808 TATTCGGATG
*
61184818 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
61184858 ATATCCGGGCTAAGTCCCGAAGGCATTTGCGTGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
61184898 ATA-CCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCC-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
61184938 ATATCCAGGCGAAGTCCTGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTACT
* * *
61184981 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
61185021 ACATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
61185061 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
61185083 TACTTGGGTT
Statistics
Matches: 191, Mismatches: 29, Indels: 11
0.83 0.13 0.05
Matches are distributed among these distances:
39 16 0.08
40 140 0.73
41 2 0.01
43 33 0.17
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:61185034 original size:123 final size:120
Alignment explanation
Indices: 61184818--61185082 Score: 331
Period size: 123 Copynumber: 2.2 Consensus size: 120
61184808 TATTCGGATG
* * *
61184818 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCAGGCGAAGTCCCGAAGGCATTTGTGCGAGTTCCTATACCCGGGCTAAGTCCCGAAGGCA
** * * *
61184883 TTTGCGTGAGTTCCTATACCTGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
66 TTTGCGTGAGTGACTACACCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
* *
61184938 ATATCCAGGCGAAGTCCTGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCAGGCGAAGTCCCGAAGGCATTTGTGC--G-AGTTCCTATACCCGGGCTAAGTCCCGAAG
*
61185003 GCATTTGTGCT-AGTGACTACATCC-GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
63 GCATTTGCG-TGAGTGACTACA-CCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
* *
61185061 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCAGGCGAAGTCCCGAAGG
61185083 TACTTGGGTT
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
120 29 0.23
122 14 0.11
123 77 0.62
124 5 0.04
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (120 bp):
ATATCCAGGCGAAGTCCCGAAGGCATTTGTGCGAGTTCCTATACCCGGGCTAAGTCCCGAAGGCA
TTTGCGTGAGTGACTACACCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
Found at i:61189390 original size:27 final size:27
Alignment explanation
Indices: 61189359--61189431 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 27
61189349 TTAGTTTACC
* *
61189359 AAATTACCAAAATGCCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
61189386 AAATTA-CTAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
**
61189412 AAATTACCGCAATACCCCTG
1 AAATTACCAAAATACCCCTG
61189432 TAGGGTAGAA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
26 21 0.58
27 15 0.42
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTATA
Found at i:61189443 original size:27 final size:27
Alignment explanation
Indices: 61189413--61189822 Score: 576
Period size: 27 Copynumber: 15.3 Consensus size: 27
61189403 TTGTTTATAA
*
61189413 AATTACCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
61189440 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
61189467 AATTACC-AGAATA-CCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
61189493 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
61189520 ACTTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
61189547 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
61189574 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
61189601 AATTACCGCAATACCCCTGTACGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
61189628 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
61189655 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
61189682 AATTACCGCGATACCGCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
61189709 AATTACCGAAATACCTCC-GTAGGGTAG
1 AATTACCGAAATACC-CCTGTAGGGTAG
**
61189736 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
61189763 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
61189790 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
61189816 AATTACC
1 AATTACC
61189823 ATTTTGCCCC
Statistics
Matches: 343, Mismatches: 35, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
26 42 0.12
27 300 0.87
28 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:61190301 original size:22 final size:22
Alignment explanation
Indices: 61190249--61190313 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
61190239 TTAAAGCCTT
*
61190249 CTGATTATGGCTTTGTGT-CAAC
1 CTGATTATGGCTCTGT-TCCAAC
*
61190271 CT-ACATATGGCTCTGTTCCAAC
1 CTGA-TTATGGCTCTGTTCCAAC
* *
61190293 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTTCCAA
61190314 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 2 0.06
22 32 0.91
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTTCCAAC
Found at i:61190573 original size:27 final size:26
Alignment explanation
Indices: 61190472--61190573 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
61190462 ATTCTGTTAA
* * *
61190472 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTCTGCCACAATATCT-GTTCTG
*
61190499 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
61190526 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
61190553 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
61190574 ATAACTGAGT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 9 0.13
27 52 0.78
28 6 0.09
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:61190745 original size:31 final size:32
Alignment explanation
Indices: 61190710--61190788 Score: 119
Period size: 31 Copynumber: 2.6 Consensus size: 32
61190700 TTGCATTCAC
61190710 ATTCTGATTTTTGA-TCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
*
61190741 ATTCT-AATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTTGATTCTGTTACCTGATACTG
*
61190772 ATTCTGA-TTCTGATTCT
1 ATTCTGATTTTTGATTCT
61190789 AGTTCTGATA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
30 7 0.16
31 36 0.82
32 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.49
Consensus pattern (32 bp):
ATTCTGATTTTTGATTCTGTTACCTGATACTG
Found at i:61190778 original size:6 final size:6
Alignment explanation
Indices: 61190732--61190797 Score: 55
Period size: 6 Copynumber: 10.8 Consensus size: 6
61190722 GATCTGTTAC
* * * *
61190732 CTGATA CTGATT CTAATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
61190781 CTGATT CT-AGTT CTGAT
1 CTGATT CTGA-TT CTGAT
61190798 AATGTTTCTT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
5 3 0.06
6 40 0.83
7 4 0.08
8 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:61192874 original size:29 final size:29
Alignment explanation
Indices: 61192827--61192903 Score: 111
Period size: 29 Copynumber: 2.7 Consensus size: 29
61192817 ATGACCCACT
*
61192827 AGGCCC-AATCACATTTATATAGCCCATT
1 AGGCCCAAATCACATTTATATAGCCCATC
* *
61192855 TGGCCCAAATCACATTTATATGGCCCATC
1 AGGCCCAAATCACATTTATATAGCCCATC
*
61192884 AGGCCCAATTCACATTTATA
1 AGGCCCAAATCACATTTATA
61192904 GTCATACTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 5 0.12
29 38 0.88
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.29
Consensus pattern (29 bp):
AGGCCCAAATCACATTTATATAGCCCATC
Found at i:61193851 original size:4 final size:4
Alignment explanation
Indices: 61193844--61193876 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
61193834 ATATATGTAT
61193844 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
61193877 ATACACCTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:61199611 original size:12 final size:12
Alignment explanation
Indices: 61199591--61199633 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
61199581 GAGAGGAAAC
*
61199591 AAAATGAGATTG
1 AAAAAGAGATTG
61199603 AAAAAGAGATTG
1 AAAAAGAGATTG
*
61199615 AAAAAGAGAATG
1 AAAAAGAGATTG
61199627 AAAAAGA
1 AAAAAGA
61199634 AAAAGAGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.63, C:0.00, G:0.23, T:0.14
Consensus pattern (12 bp):
AAAAAGAGATTG
Found at i:61203459 original size:14 final size:14
Alignment explanation
Indices: 61203440--61203480 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
61203430 CAAAATAGAT
* *
61203440 TATGCATATGTATG
1 TATGCAAATGTACG
61203454 TATGCAAATGTACG
1 TATGCAAATGTACG
*
61203468 TATGCAGATGTAC
1 TATGCAAATGTAC
61203481 CAATGCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.34
Consensus pattern (14 bp):
TATGCAAATGTACG
Found at i:61209606 original size:50 final size:49
Alignment explanation
Indices: 61209481--61209667 Score: 198
Period size: 50 Copynumber: 3.8 Consensus size: 49
61209471 TGAGGTCGCA
* * * *
61209481 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC---AGACTGTAGGTCACG
**
61209532 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * * * *
61209582 TGTGTAGTACTAAGTACAGACTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
* *
61209631 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
61209668 TAGCTTCGGC
Statistics
Matches: 115, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 38 0.33
50 41 0.36
51 31 0.27
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:61211378 original size:16 final size:16
Alignment explanation
Indices: 61211339--61211380 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
61211329 ATGAAAAAAC
61211339 AGAACAAAAATAATAA
1 AGAACAAAAATAATAA
*
61211355 A-AATAAAATATAATAA
1 AGAACAAAA-ATAATAA
61211371 AGAA-AAAAAT
1 AGAACAAAAAT
61211381 TATTATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
15 8 0.35
16 13 0.57
17 2 0.09
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (16 bp):
AGAACAAAAATAATAA
Found at i:61219677 original size:42 final size:42
Alignment explanation
Indices: 61219617--61219725 Score: 128
Period size: 43 Copynumber: 2.6 Consensus size: 42
61219607 CCGAGGCTAT
* * * **
61219617 GTGTAAGACCATATCTGGGATATGATATTGATATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGACATCGATACGAGATCCC
* * *
61219659 GTGTAAGACCATAGCTGGGGTATTGGCATCGATACGAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGACATCGATACGAGATCCC
*
61219702 ATGTAAGACCATATCTGGGATATG
1 GTGTAAGACCATATCTGGGATATG
61219726 GCATTTGTAT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 22 0.40
43 33 0.60
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGACATCGATACGAGATCCC
Found at i:61221938 original size:18 final size:17
Alignment explanation
Indices: 61221906--61221939 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
61221896 CCCATTCATT
*
61221906 TGTCTGTACGAATTTAG
1 TGTCTGTAAGAATTTAG
61221923 TGTCTAGTAAGAATTTA
1 TGTCT-GTAAGAATTTA
61221940 TCTGTTAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (17 bp):
TGTCTGTAAGAATTTAG
Found at i:61225091 original size:40 final size:40
Alignment explanation
Indices: 61225036--61225283 Score: 329
Period size: 40 Copynumber: 6.2 Consensus size: 40
61225026 TGAATGATAC
* *
61225036 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
61225076 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
61225116 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
*
61225156 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
61225196 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
61225236 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
61225276 CC-GGCTAA
1 CCGGGCTAA
61225284 ATTCCGAAGG
Statistics
Matches: 186, Mismatches: 20, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
39 6 0.03
40 178 0.96
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:61228792 original size:40 final size:40
Alignment explanation
Indices: 61228665--61228794 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
61228655 ATGCTGGAAA
* *
61228665 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
61228705 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
61228745 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
61228785 TTATATCCGG
1 TTATATCCGG
61228795 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:61236234 original size:40 final size:40
Alignment explanation
Indices: 61236149--61236443 Score: 350
Period size: 40 Copynumber: 7.5 Consensus size: 40
61236139 AAACCAAGTA
** ** * *
61236149 CCTTCGGGGTTTAG-CCGGATATAGCCACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
61236188 CCTTCGGGACTTAGCCCGGTTATGGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
61236228 CCTTCGGGACTTAGCCCGG-TATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
61236267 CCTTCGGGACTTAGCCCGGATATA-TAGCTCGCAC-AACG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
61236305 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
61236345 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** * *
61236385 CCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
61236425 -CTCTCGGGACTTAGCCCGG
1 CCT-TCGGGACTTAGCCCGG
61236444 TTATCATCCG
Statistics
Matches: 230, Mismatches: 20, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
38 27 0.12
39 70 0.30
40 133 0.58
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:61244389 original size:40 final size:40
Alignment explanation
Indices: 61244304--61244596 Score: 332
Period size: 39 Copynumber: 7.5 Consensus size: 40
61244294 AAACCAAGTA
** ** * *
61244304 CCTTCGGGGTTTAG-CCGGATATAGCCACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
61244343 CCTTCGGGACTTAGCCCGGTTATGGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
61244383 CCTTCGGGACTTAGCCCGGATA-A-TAACTC-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
61244420 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAACG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
61244460 CCTTCGGGACTTAG-CCGGATATAGTAGCTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
61244499 CCTTCGGGACTTAGCCC-GATATAGTAGCTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** * *
61244538 CCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
61244578 -CTCTCGGGACTTAGCCCGG
1 CCT-TCGGGACTTAGCCCGG
61244597 TTATCATCCG
Statistics
Matches: 225, Mismatches: 21, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
37 30 0.13
38 6 0.03
39 97 0.43
40 92 0.41
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:61244541 original size:78 final size:78
Alignment explanation
Indices: 61244304--61244596 Score: 337
Period size: 79 Copynumber: 3.7 Consensus size: 78
61244294 AAACCAAGTA
** * * * * *
61244304 CCTTCGGGGTTTAGCCGGATATAGCCACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATGGT
1 CCTTCGGGACTTAGCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* * *
61244369 AACTTGCACAAATG
65 AGCTCGCACGAATG
61244383 CCTTCGGGACTTAGCCCGGATA-A-TAACTC-CACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAG-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
61244445 TAGCTCGCACGAACG
64 TAGCTCGCACGAATG
*
61244460 CCTTCGGGACTTAGCCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTTAGCCC-GATATAGT
1 CCTTCGGGACTTAGCCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
61244524 AGCTCGCACGAATG
65 AGCTCGCACGAATG
* * *
61244538 CCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAG-CCGGATA-TAG-TACTCGCACAAATGCCT-TCGGGACTTAGCCCGG
61244597 TTATCATCCG
Statistics
Matches: 186, Mismatches: 17, Indels: 21
0.83 0.08 0.09
Matches are distributed among these distances:
76 7 0.04
77 57 0.31
78 45 0.24
79 68 0.37
80 9 0.05
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
GCTCGCACGAATG
Found at i:61253927 original size:19 final size:19
Alignment explanation
Indices: 61253903--61253941 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
61253893 GAGTGTTAAG
61253903 TACATACCTGTTCAAAGTA
1 TACATACCTGTTCAAAGTA
61253922 TACATACCTGTTCAAAGTA
1 TACATACCTGTTCAAAGTA
61253941 T
1 T
61253942 TCATTTCACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (19 bp):
TACATACCTGTTCAAAGTA
Found at i:61254164 original size:46 final size:46
Alignment explanation
Indices: 61254097--61254318 Score: 290
Period size: 46 Copynumber: 4.8 Consensus size: 46
61254087 TGTAACCCGC
*
61254097 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
*
61254143 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
61254189 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
61254236 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
61254282 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
61254319 TGCCCAAATA
Statistics
Matches: 157, Mismatches: 12, Indels: 14
0.86 0.07 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 2 0.01
46 114 0.73
47 32 0.20
49 4 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:61257726 original size:48 final size:48
Alignment explanation
Indices: 61257668--61258140 Score: 793
Period size: 48 Copynumber: 9.9 Consensus size: 48
61257658 ATATACACAC
* * *
61257668 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
61257716 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
61257764 ATCTCATATATATTTCACATTAGCAATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
61257812 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
61257860 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
61257908 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
61257956 ATCTCATATATATTTCACATTATCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
61258004 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
61258052 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
61258100 ATCTCATACATATATCACACTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
61258141 CACATATATA
Statistics
Matches: 399, Mismatches: 26, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 399 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:61266215 original size:27 final size:26
Alignment explanation
Indices: 61266167--61266226 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
61266157 GCGAGGCTGG
*
61266167 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
61266194 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
61266220 CAGATAT
1 CAGATAT
61266227 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:61273198 original size:49 final size:49
Alignment explanation
Indices: 61273029--61273253 Score: 279
Period size: 49 Copynumber: 4.5 Consensus size: 49
61273019 TGAGGTCGCA
* * * * ** *
61273029 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTAATCAGG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * **
61273080 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
* *
61273130 TGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATTGGCCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* *
61273179 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
61273228 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
61273254 TGCGTACCAG
Statistics
Matches: 152, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 77 0.51
50 42 0.28
51 33 0.22
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:61273210 original size:99 final size:100
Alignment explanation
Indices: 61273022--61273261 Score: 295
Period size: 99 Copynumber: 2.4 Consensus size: 100
61273012 TCTATTGTGA
* * * *
61273022 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTAATCAGGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTAACCACGTGTGTAG
* **
61273087 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * **
61273122 AGGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAA-T-TGGCCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTAACCACGTGTGTA
*
61273185 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
61273221 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
61273262 AGATAGCTTT
Statistics
Matches: 118, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
98 35 0.30
99 42 0.36
100 1 0.01
101 40 0.34
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTAACCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:61276274 original size:15 final size:14
Alignment explanation
Indices: 61276254--61276309 Score: 67
Period size: 15 Copynumber: 3.8 Consensus size: 14
61276244 TCGTATCTTA
61276254 GGTTTCTTTACTCTG
1 GGTTTCTTTA-TCTG
61276269 GGTTTCTTTATTCTG
1 GGTTTCTTTA-TCTG
*
61276284 GGTTTCTCTATCTTG
1 GGTTTCTTTATC-TG
*
61276299 GATTTCTTTAT
1 GGTTTCTTTAT
61276310 TCAGTTTTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
14 2 0.06
15 34 0.94
ACGTcount: A:0.09, C:0.16, G:0.18, T:0.57
Consensus pattern (14 bp):
GGTTTCTTTATCTG
Found at i:61276290 original size:30 final size:30
Alignment explanation
Indices: 61276254--61276311 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
61276244 TCGTATCTTA
* *
61276254 GGTTTCTTTA-CTCTGGGTTTCTTTATTCTG
1 GGTTTCTCTATCT-TGGATTTCTTTATTCTG
61276284 GGTTTCTCTATCTTGGATTTCTTTATTC
1 GGTTTCTCTATCTTGGATTTCTTTATTC
61276312 AGTTTTCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.09, C:0.17, G:0.17, T:0.57
Consensus pattern (30 bp):
GGTTTCTCTATCTTGGATTTCTTTATTCTG
Found at i:61278116 original size:50 final size:48
Alignment explanation
Indices: 61277983--61278213 Score: 275
Period size: 50 Copynumber: 4.7 Consensus size: 48
61277973 TCTATTGTGA
* * * * *
61277983 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CGGATAA-T-T
* * **
61278034 GATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CGGATAATT
*
61278083 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CGGATAATT
*
61278133 GGTCACGTGTGTAGTACTAAGTGCA-GCTACTACGTGTACTGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-GGATAATT
* *
61278181 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
61278214 TGCGTACCAG
Statistics
Matches: 159, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
47 1 0.01
48 43 0.27
49 33 0.21
50 44 0.28
51 38 0.24
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (48 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACGGATAATT
Found at i:61278181 original size:48 final size:49
Alignment explanation
Indices: 61277983--61278213 Score: 293
Period size: 48 Copynumber: 4.7 Consensus size: 49
61277973 TCTATTGTGA
* * * * *
61277983 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-T
* * * **
61278034 GATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
61278083 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
61278133 GGTCACGTGTGTAGTACTAAGTGCA-GCTACTACGTGTACTGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
61278181 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
61278214 TGCGTACCAG
Statistics
Matches: 159, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
48 44 0.28
49 33 0.21
50 44 0.28
51 38 0.24
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:61298604 original size:45 final size:45
Alignment explanation
Indices: 61298543--61298679 Score: 184
Period size: 45 Copynumber: 3.0 Consensus size: 45
61298533 CAGGATTTTG
*
61298543 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * *
61298588 ATATGTGTTTTTGTGTAAGACCACATCTAGGATGTTGGCATCGAT
1 ATATGTGTTTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * *
61298633 ATATTTGTGTTTTTGTATAATACCACGTTTGGGACGTTGTCATCGAT
1 ATA--TGTGTTTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
61298680 CTGTGTAGTT
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 44 0.56
47 35 0.44
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.39
Consensus pattern (45 bp):
ATATGTGTTTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:61301471 original size:42 final size:41
Alignment explanation
Indices: 61301412--61301527 Score: 119
Period size: 42 Copynumber: 2.8 Consensus size: 41
61301402 TAGGGTTAGT
* *
61301412 TGAGATTTTGTGTAAGACCATATCTGGGATATGGTGTCAAT-A
1 TGAGATTTCGTGTAAGACCATATCTGGGATAT-GTGGC-ATCA
* * *
61301454 TGAGATTTCGTGTAAGACCATAGCTAGGCTAT-TGGCATCGA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGTGGCATC-A
** *
61301495 TGAGATCCCATGTAAGACCATATCTGGGATATG
1 TGAGATTTCGTGTAAGACCATATCTGGGATATG
61301528 ACATTGGTAT
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
39 2 0.03
40 3 0.05
41 27 0.45
42 28 0.47
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (41 bp):
TGAGATTTCGTGTAAGACCATATCTGGGATATGTGGCATCA
Found at i:61301645 original size:20 final size:20
Alignment explanation
Indices: 61301614--61301660 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
61301604 CGGTAAAGTT
*
61301614 TAAGTAGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTATGG
* *
61301634 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
61301654 TAAGTTG
1 TAAGTTG
61301661 CAAGTTGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.02, G:0.30, T:0.34
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:61303096 original size:93 final size:93
Alignment explanation
Indices: 61302988--61303159 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
61302978 CGCCCATAAG
* * *
61302988 CGAACTCGAACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
61303053 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
61303081 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
61303146 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
61303160 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:61303156 original size:46 final size:46
Alignment explanation
Indices: 61302981--61303156 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
61302971 TGTAACCCGC
* * * * *
61302981 CCATAAGCGAACTCGAACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
61303027 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
61303077 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
61303120 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
61303157 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:61307278 original size:28 final size:28
Alignment explanation
Indices: 61307180--61307278 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
61307170 TCACAAATTG
* * * *
61307180 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTTC-GACTATATA
* * *
61307209 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCGACTATATA
61307237 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGACTATAT-A
*
61307265 GCACTAAGTTTGCG
1 GCACTAAGTGTGCG
61307279 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGACTATATA
Found at i:61310352 original size:27 final size:28
Alignment explanation
Indices: 61310322--61310391 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
61310312 ATAATAAGTC
*
61310322 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
61310349 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
61310377 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61310392 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:61318423 original size:27 final size:28
Alignment explanation
Indices: 61318393--61318462 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
61318383 ATAATAAGTC
*
61318393 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
61318420 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
61318448 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61318463 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:61322607 original size:10 final size:10
Alignment explanation
Indices: 61322588--61322617 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
61322578 TTTTATCAAA
61322588 TAAAATATAT
1 TAAAATATAT
*
61322598 TAATATATAT
1 TAAAATATAT
61322608 TAAAATATAT
1 TAAAATATAT
61322618 CATAATGTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
TAAAATATAT
Found at i:61328603 original size:42 final size:42
Alignment explanation
Indices: 61328554--61328665 Score: 147
Period size: 43 Copynumber: 2.6 Consensus size: 42
61328544 TGAGATTTCG
* *
61328554 TGTAAGACCATATCTGGGATATGGCATCGATATGAG-T-TTT
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCTA
* *
61328594 TGCATAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCTA
1 TG--TAAGACCATATCTGGGATA-TGGCATCGATATGAGATCCTA
61328639 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
61328666 TGGTATGGTA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
40 2 0.03
42 23 0.38
43 32 0.52
44 1 0.02
45 3 0.05
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATCCTA
Found at i:61328776 original size:20 final size:20
Alignment explanation
Indices: 61328751--61328789 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
61328741 CAAAGTTTAA
*
61328751 GTTGTGAATGACTATGGTAT
1 GTTGTGAAAGACTATGGTAT
*
61328771 GTTGTGAAAGATTATGGTA
1 GTTGTGAAAGACTATGGTA
61328790 AGATGCTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.31, T:0.38
Consensus pattern (20 bp):
GTTGTGAAAGACTATGGTAT
Found at i:61331858 original size:13 final size:13
Alignment explanation
Indices: 61331840--61331869 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
61331830 TTTTACCTTT
*
61331840 TTAATTTTCTTAG
1 TTAATTTACTTAG
61331853 TTAATTTACTTAG
1 TTAATTTACTTAG
61331866 TTAA
1 TTAA
61331870 AATCTAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (13 bp):
TTAATTTACTTAG
Found at i:61336141 original size:6 final size:5
Alignment explanation
Indices: 61336122--61336205 Score: 51
Period size: 5 Copynumber: 15.2 Consensus size: 5
61336112 TCAATAATCT
* * *
61336122 TTTTC TTCTC TTTTC ATTTTC TCTTTC TTTTTCC TTTTC CTTTA TTTTC
1 TTTTC TTTTC TTTTC -TTTTC T-TTTC -TTTT-C TTTTC TTTTC TTTTC
* *
61336171 TCTTTAT TTTTC TTTTC TCTTTAT TTTTC TTTTC T
1 T-TTT-C TTTTC TTTTC T-TTT-C TTTTC TTTTC T
61336206 CTCAAACTCT
Statistics
Matches: 61, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
5 29 0.48
6 28 0.46
7 4 0.07
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTTC
Found at i:61336151 original size:28 final size:27
Alignment explanation
Indices: 61336119--61336202 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 27
61336109 ATTTCAATAA
*
61336119 TCTTTTTCTTCTCTTTTCATTTTCTCTT
1 TCTTTTTCTTTTCTTTT-ATTTTCTCTT
*
61336147 TCTTTTTCCTTTTCCTTTATTTTCTCTT
1 TCTTTTT-CTTTTCTTTTATTTTCTCTT
*
61336175 TATTTTTCTTTTCTCTTTATTTT-TCTT
1 TCTTTTTCTTTTCT-TTTATTTTCTCTT
61336202 T
1 T
61336203 TCTCTCAAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
27 11 0.22
28 31 0.62
29 8 0.16
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (27 bp):
TCTTTTTCTTTTCTTTTATTTTCTCTT
Found at i:61336164 original size:17 final size:18
Alignment explanation
Indices: 61336127--61336207 Score: 56
Period size: 17 Copynumber: 5.0 Consensus size: 18
61336117 AATCTTTTTC
61336127 TTCTCTTTTCATTTTCTCT
1 TTCT-TTTTCATTTTCTCT
61336146 TTCTTTTTC-----CT-T
1 TTCTTTTTCATTTTCTCT
*
61336158 TTC-CTTT-ATTTTCTCT
1 TTCTTTTTCATTTTCTCT
*
61336174 TTATTTTTC-TTTTCTCT
1 TTCTTTTTCATTTTCTCT
*
61336191 TTATTTTTC-TTTTCTCT
1 TTCTTTTTCATTTTCTCT
61336208 CAAACTCTCT
Statistics
Matches: 51, Mismatches: 3, Indels: 18
0.71 0.04 0.25
Matches are distributed among these distances:
11 3 0.06
12 4 0.08
13 2 0.04
15 2 0.04
16 3 0.06
17 28 0.55
18 5 0.10
19 4 0.08
ACGTcount: A:0.05, C:0.22, G:0.00, T:0.73
Consensus pattern (18 bp):
TTCTTTTTCATTTTCTCT
Found at i:61337969 original size:36 final size:36
Alignment explanation
Indices: 61337929--61338002 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
61337919 GAGGTACAAG
* *
61337929 TATGTACACGAGCAAGTTATGCTTGTGAGACATTGA
1 TATGTACACGAACAAGTTATGCTTGTGAAACATTGA
61337965 TATGTACACGAACAAGTTATGCTTGTGAAACATTGA
1 TATGTACACGAACAAGTTATGCTTGTGAAACATTGA
61338001 TA
1 TA
61338003 ACCTTGTGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.31
Consensus pattern (36 bp):
TATGTACACGAACAAGTTATGCTTGTGAAACATTGA
Found at i:61340680 original size:29 final size:27
Alignment explanation
Indices: 61340646--61340748 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
61340636 TACTCAATCA
*
61340646 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
61340675 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
61340704 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
61340733 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
61340749 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:61350602 original size:30 final size:28
Alignment explanation
Indices: 61350548--61350604 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 28
61350538 TTTCTTCCAC
* *
61350548 ACTTTCTTTTTGCTCACTCTCTTTTTCA
1 ACTTTCTTTTTGCACACACTCTTTTTCA
61350576 ACTTTACTTTCTTGCACACACTCTTTTTC
1 ACTTT-CTTT-TTGCACACACTCTTTTTC
61350605 TTTTTCGACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.20
29 4 0.16
30 16 0.64
ACGTcount: A:0.14, C:0.30, G:0.04, T:0.53
Consensus pattern (28 bp):
ACTTTCTTTTTGCACACACTCTTTTTCA
Found at i:61351713 original size:13 final size:12
Alignment explanation
Indices: 61351664--61351702 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
61351654 CAAAAAAAAA
61351664 TTTCGGAAATTTT
1 TTTC-GAAATTTT
*
61351677 TTTTGAAATTTT
1 TTTCGAAATTTT
61351689 TTTCGAAATTTT
1 TTTCGAAATTTT
61351701 TT
1 TT
61351703 AATCAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 21 0.88
13 3 0.12
ACGTcount: A:0.23, C:0.05, G:0.10, T:0.62
Consensus pattern (12 bp):
TTTCGAAATTTT
Found at i:61355286 original size:28 final size:27
Alignment explanation
Indices: 61355223--61355292 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
61355213 ATAGTGAGTC
61355223 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
61355250 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
61355278 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61355293 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:61363063 original size:28 final size:27
Alignment explanation
Indices: 61363000--61363069 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
61362990 ATAGTGAGTC
61363000 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
61363027 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
61363055 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61363070 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:61370431 original size:11 final size:11
Alignment explanation
Indices: 61370417--61370443 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
61370407 TTTTGTTTTC
61370417 TTTTTCTTATT
1 TTTTTCTTATT
61370428 TTTTTCTTATT
1 TTTTTCTTATT
61370439 TTTTT
1 TTTTT
61370444 ACAATCTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTCTTATT
Found at i:61372187 original size:13 final size:14
Alignment explanation
Indices: 61372153--61372185 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
61372143 TTTTTTTCCA
*
61372153 TTTTTTTC-GAACT
1 TTTTTTTCAAAACT
61372166 TTTTTTTCAAAACT
1 TTTTTTTCAAAACT
61372180 TTTTTT
1 TTTTTT
61372186 CACTTACTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.18, C:0.12, G:0.03, T:0.67
Consensus pattern (14 bp):
TTTTTTTCAAAACT
Found at i:61373311 original size:39 final size:41
Alignment explanation
Indices: 61373268--61373350 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 41
61373258 TGAGTAAAAT
** *
61373268 GCCAC-AAAAGGTGAGCAACAGTGGTGTTTTTGGT-CAAAC
1 GCCACAAAAAGGTGAGCAACAGTGGCATTTTTAGTCCAAAC
* *
61373307 GCCACAAAAAGTTGAGCAATAGTGGCATTTTTAGTCCAAAC
1 GCCACAAAAAGGTGAGCAACAGTGGCATTTTTAGTCCAAAC
61373348 GCC
1 GCC
61373351 GCGAATATGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 5 0.14
40 24 0.65
41 8 0.22
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (41 bp):
GCCACAAAAAGGTGAGCAACAGTGGCATTTTTAGTCCAAAC
Found at i:61373570 original size:5 final size:5
Alignment explanation
Indices: 61373560--61373586 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
61373550 CGACACTTGT
61373560 TTCGA TTCGA TTCGA TTCGA TTCGA TT
1 TTCGA TTCGA TTCGA TTCGA TTCGA TT
61373587 TAATTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (5 bp):
TTCGA
Found at i:61373636 original size:24 final size:24
Alignment explanation
Indices: 61373606--61373654 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
61373596 TATTTTTCTC
61373606 TTATTTTTAT-TTTGAAA-TCGATT
1 TTATTTTTATATTTGAAACT-GATT
61373629 TTATTTTTATATTTGAAACTGATT
1 TTATTTTTATATTTGAAACTGATT
61373653 TT
1 TT
61373655 CTAAAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 10 0.42
24 13 0.54
25 1 0.04
ACGTcount: A:0.27, C:0.04, G:0.08, T:0.61
Consensus pattern (24 bp):
TTATTTTTATATTTGAAACTGATT
Found at i:61373837 original size:6 final size:7
Alignment explanation
Indices: 61373805--61373844 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
61373795 ATGGCTTTCT
61373805 CTAAACC
1 CTAAACC
*
61373812 CTAACCC
1 CTAAACC
61373819 CTAAACC
1 CTAAACC
61373826 CTTAAA-C
1 C-TAAACC
61373833 CTAAACC
1 CTAAACC
61373840 CTAAA
1 CTAAA
61373845 ACTTTAAACC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 4 0.14
7 21 0.72
8 4 0.14
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:61373841 original size:21 final size:21
Alignment explanation
Indices: 61373806--61373855 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
61373796 TGGCTTTCTC
* *
61373806 TAAACCCTAACCCCTAAACCCT
1 TAAA-CCTAAACCCTAAAACCT
*
61373828 TAAACCTAAACCCTAAAACTT
1 TAAACCTAAACCCTAAAACCT
61373849 TAAACCT
1 TAAACCT
61373856 TAAAAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.22
Consensus pattern (21 bp):
TAAACCTAAACCCTAAAACCT
Found at i:61373846 original size:14 final size:14
Alignment explanation
Indices: 61373805--61373860 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
61373795 ATGGCTTTCT
**
61373805 CTAAACCCTAACCC
1 CTAAACCCTAAAAC
*
61373819 CTAAACCCTTAAAC
1 CTAAACCCTAAAAC
61373833 CTAAACCCTAAAAC
1 CTAAACCCTAAAAC
* *
61373847 TTTAAACCTTAAAA
1 -CTAAACCCTAAAA
61373861 AATAAATTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
14 24 0.69
15 11 0.31
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (14 bp):
CTAAACCCTAAAAC
Found at i:61374672 original size:117 final size:116
Alignment explanation
Indices: 61374338--61374733 Score: 508
Period size: 116 Copynumber: 3.4 Consensus size: 116
61374328 AAACACCGTA
* * * * * * * *
61374338 AATATGTATTAAAAGATTGCAAAACGTTGTCGTTTTCATTTTTGCTTTTAGTGGCGTTTTTACT-
1 AATATGTTTTAAGAGTTTGCAAAACGTTGTCGTTTTTATCTGTGTTTTTAGTGGCATTTTTACTA
* * * *
61374402 AAATCACCGCAAAAGGATATGTGTTAGTGGCGTTTTCACAAAAAATGTCACG
66 AAAT-GCCGCAAAAGGATATGTGTTAGTGGCATTTTCACAAAAAATGCCGCG
** **
61374454 AATATGTTTTAAGAGTTTGCAAAACACTGTCGTTTTTATCTACGTTTTTAGTGGCATTTTTACTA
1 AATATGTTTTAAGAGTTTGCAAAACGTTGTCGTTTTTATCTGTGTTTTTAGTGGCATTTTTACTA
* *
61374519 AAACGCCGCAAAAGGATATGAGTTAGTGGCATTTTCACAAAAAATGCCGCG
66 AAATGCCGCAAAAGGATATGTGTTAGTGGCATTTTCACAAAAAATGCCGCG
* * *
61374570 AATATGTTTTAAGAGTTTGCAAATCGTTGTTGTTTTTATCTGTGTTTTTAGTGGCATTTTTTATT
1 AATATGTTTTAAGAGTTTGCAAAACGTTGTCGTTTTTATCTGTGTTTTTAGTGGCA-TTTTTACT
* * *
61374635 AAAATGCCGCAAAAGAATATGTGTTAGTGGCATTTTCACAAAAAA-ACACTGCA
65 AAAATGCCGCAAAAGGATATGTGTTAGTGGCATTTTCACAAAAAATGC-C-GCG
* *
61374688 AATATGTTTTAAGAGTTTGCAAAATGTTGTCGTTTTTAGCTGTGTT
1 AATATGTTTTAAGAGTTTGCAAAACGTTGTCGTTTTTATCTGTGTT
61374734 AGTGGCCTTT
Statistics
Matches: 243, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
116 146 0.60
117 53 0.22
118 44 0.18
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.39
Consensus pattern (116 bp):
AATATGTTTTAAGAGTTTGCAAAACGTTGTCGTTTTTATCTGTGTTTTTAGTGGCATTTTTACTA
AAATGCCGCAAAAGGATATGTGTTAGTGGCATTTTCACAAAAAATGCCGCG
Found at i:61375560 original size:32 final size:33
Alignment explanation
Indices: 61375519--61375585 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 33
61375509 CATCTATGCT
61375519 ATTCGAGTTAAATGAGATGA-TGTTGGGTATGA
1 ATTCGAGTTAAATGAGATGAGTGTTGGGTATGA
61375551 ATTCGAGTTAAATGAGATGAGTGTTGGGTATGA
1 ATTCGAGTTAAATGAGATGAGTGTTGGGTATGA
61375584 AT
1 AT
61375586 ATATGCATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 20 0.59
33 14 0.41
ACGTcount: A:0.31, C:0.03, G:0.31, T:0.34
Consensus pattern (33 bp):
ATTCGAGTTAAATGAGATGAGTGTTGGGTATGA
Found at i:61378277 original size:27 final size:27
Alignment explanation
Indices: 61378247--61378299 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
61378237 CCTCGCTGCA
*
61378247 ATCTGGTGGCCTAGCCACAATATCTGT
1 ATCTGGTGACCTAGCCACAATATCTGT
* * *
61378274 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTGGTGACCTAGCCACAATATCTG
61378300 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (27 bp):
ATCTGGTGACCTAGCCACAATATCTGT
Done.