Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 207 of 335
Found at i:61672908 original size:51 final size:50
Alignment explanation
Indices: 61672807--61672909 Score: 136
Period size: 50 Copynumber: 2.0 Consensus size: 50
61672797 AATCCCTCAC
*
61672807 CCCTCTCCCCTTCCCCCACCAAACCTCCCCACCACCATCATTTTCTCTCT
1 CCCTCTCCCCTTCCCCCACCAAACCTCCCCACCACCATCATTCTCTCTCT
* * **
61672857 CCCTTTCCCC-TCCCTCCACCAGACCTCCCTCACCACTGTCATTCTCTCTCT
1 CCCTCTCCCCTTCCC-CCACCAAACCTCCC-CACCACCATCATTCTCTCTCT
61672908 CC
1 CC
61672910 TTATTTGCTA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
49 4 0.09
50 22 0.48
51 20 0.43
ACGTcount: A:0.14, C:0.57, G:0.02, T:0.27
Consensus pattern (50 bp):
CCCTCTCCCCTTCCCCCACCAAACCTCCCCACCACCATCATTCTCTCTCT
Found at i:61674956 original size:41 final size:40
Alignment explanation
Indices: 61674780--61674967 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
61674770 GCTACTCGTT
* * * *
61674780 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TGGTAACTTGCA
* *
61674820 CAAATGCTTTCGGGACTTAACCCGAATTTGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTTGCA
* *
61674860 CAAATGCCTTCGGGAATTAACCCGGATTTGGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTTGCA
* *
61674900 CAAATGCCTTCGGGACTTAACCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTT-GCA
* * *
61674941 CAAAAGCCTTTGGGACTTAGCCCGGAT
1 CAAATGCCTTCGGGACTTAACCCGGAT
61674968 ATCATTCGAA
Statistics
Matches: 129, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
40 100 0.78
41 29 0.22
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTTGCA
Found at i:61682921 original size:39 final size:40
Alignment explanation
Indices: 61682829--61683013 Score: 234
Period size: 39 Copynumber: 4.7 Consensus size: 40
61682819 GCTACTCGTT
* * *
61682829 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
61682869 CAAATGCCTTCGGGACTTAACCCGGATTTGGTAACT-GCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
61682908 CAAATGCCTTCGGGAATTAACCCGGATTTGGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
61682948 CAAATGCCTTC-GGACTT-ACCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
* *
61682987 CAAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAATGCCTTCGGGACTTAACCCGGAT
61683014 ATCATTCGAA
Statistics
Matches: 129, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
38 14 0.11
39 56 0.43
40 50 0.39
41 9 0.07
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:61682932 original size:79 final size:79
Alignment explanation
Indices: 61682829--61683013 Score: 243
Period size: 79 Copynumber: 2.3 Consensus size: 79
61682819 GCTACTCGTT
61682829 CAAATGCCTTCGGGACA-TAGCCCGG-TTATAGTAACTCACACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGA-ATTAGCCCGGATT-TAGTAACTCACACAAATGCCTTC-GGACTT-ACCC
*
61682892 GGATTTGGTAAC-T-GCA
62 GGATTTAGTAACTTAGCA
* * *
61682908 CAAATGCCTTCGGGAATTAACCCGGATTTGGTAACTCGCACAAATGCCTTCGGACTTACCCGGAT
1 CAAATGCCTTCGGGAATTAGCCCGGATTTAGTAACTCACACAAATGCCTTCGGACTTACCCGGAT
*
61682973 TTAGTCACTTAGCA
66 TTAGTAACTTAGCA
* *
61682987 CAAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAATGCCTTCGGGAATTAGCCCGGAT
61683014 ATCATTCGAA
Statistics
Matches: 94, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
77 14 0.15
78 8 0.09
79 70 0.74
80 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGAATTAGCCCGGATTTAGTAACTCACACAAATGCCTTCGGACTTACCCGGAT
TTAGTAACTTAGCA
Found at i:61691357 original size:40 final size:40
Alignment explanation
Indices: 61691287--61691490 Score: 254
Period size: 40 Copynumber: 5.2 Consensus size: 40
61691277 CGGATGATAA
* * *
61691287 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCT
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
61691327 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
61691367 CGAAGGCATTTGTGAGAGTTACTATAACCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
61691407 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * * *
61691446 CGAAGACATTTGAGCTAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
61691485 CGAAGG
1 CGAAGG
61691491 TACTTGGTTT
Statistics
Matches: 146, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 5 0.03
39 36 0.25
40 104 0.71
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:61695354 original size:48 final size:48
Alignment explanation
Indices: 61695296--61695708 Score: 445
Period size: 48 Copynumber: 8.7 Consensus size: 48
61695286 TGAACATGCA
61695296 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* * * *
61695344 TATATGTGATAAGGCCGAATGGCCT-ATGCG--ATGA-ATGTG-AACATG
1 TATATGTGATAAAGCCGAATGG-CTAATGTGAAAT-ATATGTGTGATATG
* * * * *
61695389 CATATATGTGATGAGGCCGAATGGCCAATGTG--ATGA-ATGTGAG-CATG
1 --TATATGTGATAAAGCCGAATGGCTAATGTGAAAT-ATATGTGTGATATG
* * * **** *
61695436 CATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATAAACATG-CA--
1 --TATATGTGATAAAGCCGAATGGCTAATGTGA--AATATATGTGTGATATG
* * * *
61695485 TATATGTGATAAAGCCGAATGGCCAATGTGAAATATATATGAGATGTG
1 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
* *
61695533 TATATGTGATAAAGCTGAATGACTAATGTGAAATATATGTGTGATATG
1 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
61695581 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
61695629 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
*
61695677 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATATGTGATAAAGCCGAATGGCTAATGTGAA
61695709 TGTTGTAACA
Statistics
Matches: 319, Mismatches: 32, Indels: 28
0.84 0.08 0.07
Matches are distributed among these distances:
45 12 0.04
46 8 0.03
47 98 0.31
48 192 0.60
49 2 0.01
50 1 0.00
51 6 0.02
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGATAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
Found at i:61695813 original size:37 final size:37
Alignment explanation
Indices: 61695763--61695860 Score: 178
Period size: 37 Copynumber: 2.6 Consensus size: 37
61695753 TCCAGGTGAA
61695763 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAG
61695800 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAG
* *
61695837 ACCCGATAACTTCGTGTGGAGATT
1 ACCCGATGACTACGTGTGGAGATT
61695861 TCGTCTGAGC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
ACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAG
Found at i:61700922 original size:30 final size:30
Alignment explanation
Indices: 61700888--61700948 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
61700878 TTCTCGAGCC
61700888 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
61700918 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
61700948 T
1 T
61700949 GAGTTAATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:61704670 original size:22 final size:21
Alignment explanation
Indices: 61704616--61704670 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 21
61704606 CTTAGCTCGT
* *
61704616 ATGATCTTACTGTTTCAGCTC
1 ATGAGCTTACCGTTTCAGCTC
*
61704637 ATCAAAGCTTACCGTTTCAGCTC
1 AT--GAGCTTACCGTTTCAGCTC
61704660 AATGAGCTTAC
1 -ATGAGCTTAC
61704671 TGTCCATTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
21 2 0.07
22 7 0.26
23 16 0.59
24 2 0.07
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (21 bp):
ATGAGCTTACCGTTTCAGCTC
Found at i:61719328 original size:36 final size:34
Alignment explanation
Indices: 61719279--61719345 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 34
61719269 GTGCTGTGGT
61719279 GGAAGGGGAAAAAGAAGGAAAAAGAAAGGAGAGAAG
1 GGAAGGGGAAAAAG--GGAAAAAGAAAGGAGAGAAG
*
61719315 GGAAGGTGG-AAAAGGGAAGAAGAAAGGAGAG
1 GGAAGG-GGAAAAAGGGAAAAAGAAAGGAGAG
61719346 TTGAAGGGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 16 0.55
36 11 0.38
37 2 0.07
ACGTcount: A:0.54, C:0.00, G:0.45, T:0.01
Consensus pattern (34 bp):
GGAAGGGGAAAAAGGGAAAAAGAAAGGAGAGAAG
Found at i:61726817 original size:22 final size:21
Alignment explanation
Indices: 61726792--61726832 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
61726782 TGTTTTATAG
*
61726792 ATTAAAGATGTCTGATGAAAGA
1 ATTAAAGAT-ACTGATGAAAGA
*
61726814 ATTAATGATACTGATGAAA
1 ATTAAAGATACTGATGAAA
61726833 AAATGCATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.46, C:0.05, G:0.20, T:0.29
Consensus pattern (21 bp):
ATTAAAGATACTGATGAAAGA
Found at i:61732163 original size:19 final size:19
Alignment explanation
Indices: 61732134--61732178 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
61732124 TTAAAGAAAC
61732134 AAAGAAACAAAACAAA-AGA
1 AAAG-AACAAAACAAACAGA
*
61732153 AATAGAACAAAAGAAACAGA
1 AA-AGAACAAAACAAACAGA
61732173 AAAGAA
1 AAAGAA
61732179 GCAGAGAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.76, C:0.09, G:0.13, T:0.02
Consensus pattern (19 bp):
AAAGAACAAAACAAACAGA
Found at i:61732173 original size:14 final size:14
Alignment explanation
Indices: 61732134--61732173 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
61732124 TTAAAGAAAC
*
61732134 AAAGAAACAAAACA
1 AAAGAAACAGAACA
*
61732148 AAAGAAATAGAACA
1 AAAGAAACAGAACA
61732162 AAAGAAACAGAA
1 AAAGAAACAGAA
61732174 AAGAAGCAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.75, C:0.10, G:0.12, T:0.03
Consensus pattern (14 bp):
AAAGAAACAGAACA
Found at i:61735077 original size:35 final size:35
Alignment explanation
Indices: 61735031--61735100 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
61735021 CTGTTATTAA
61735031 AACTCAAAGTAATATTCGTATGATTACATACATGT
1 AACTCAAAGTAATATTCGTATGATTACATACATGT
61735066 AACTCAAAGTAATATTCGTATGATTACATACATGT
1 AACTCAAAGTAATATTCGTATGATTACATACATGT
61735101 GAATCACATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (35 bp):
AACTCAAAGTAATATTCGTATGATTACATACATGT
Found at i:61738455 original size:22 final size:22
Alignment explanation
Indices: 61738410--61738455 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
61738400 GACATTTGAG
**
61738410 AAAAAAAAAAGTTGATTTTGTC
1 AAAAAAAAAAGTTGATTTCATC
**
61738432 AAAAAAATTAGTTGATTTCATC
1 AAAAAAAAAAGTTGATTTCATC
61738454 AA
1 AA
61738456 TTTGCCTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.33
Consensus pattern (22 bp):
AAAAAAAAAAGTTGATTTCATC
Found at i:61739340 original size:41 final size:41
Alignment explanation
Indices: 61739272--61739401 Score: 163
Period size: 41 Copynumber: 3.2 Consensus size: 41
61739262 GTGTCATACT
* * * *
61739272 TTACATGCAATCAGAATATATGGTAACAATTAGTGGCATGC
1 TTACATGCAATCAGTATGTACGTTAACAATTAGTGGCATGC
* * *
61739313 TTATATGCAATCAGTATGTACGTTAACAATTAATGGCATGT
1 TTACATGCAATCAGTATGTACGTTAACAATTAGTGGCATGC
* *
61739354 TTACATGCAATCAGTATGTACGGTT-ACAATCAGTGACATGC
1 TTACATGCAATCAGTATGTAC-GTTAACAATTAGTGGCATGC
61739395 TTACATG
1 TTACATG
61739402 TAACCAATAT
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
41 73 0.96
42 3 0.04
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.32
Consensus pattern (41 bp):
TTACATGCAATCAGTATGTACGTTAACAATTAGTGGCATGC
Found at i:61741325 original size:40 final size:40
Alignment explanation
Indices: 61741270--61741450 Score: 276
Period size: 40 Copynumber: 4.5 Consensus size: 40
61741260 CATTTGAATG
61741270 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
61741310 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
61741350 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
61741390 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
61741430 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
61741451 AAACTTGGGT
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 117 0.90
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:61749324 original size:40 final size:40
Alignment explanation
Indices: 61749269--61749449 Score: 276
Period size: 40 Copynumber: 4.5 Consensus size: 40
61749259 CATTTGAATG
61749269 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
61749309 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
61749349 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
61749389 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
61749429 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
61749450 AAACTTGGGT
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 117 0.90
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:61751955 original size:46 final size:46
Alignment explanation
Indices: 61751778--61751959 Score: 231
Period size: 46 Copynumber: 4.0 Consensus size: 46
61751768 TTTGACATGA
* * * * * *
61751778 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** * * *
61751824 TGCCATGGTATCTTTCAACCATAGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
61751870 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
61751916 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
61751960 AGAGCACACT
Statistics
Matches: 121, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 4 0.03
46 117 0.97
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:61758277 original size:44 final size:45
Alignment explanation
Indices: 61758209--61758359 Score: 164
Period size: 44 Copynumber: 3.4 Consensus size: 45
61758199 CTAATTATGT
* * *
61758209 GCACTTAGTGTGCGAAATCAAGATAGCTTTAGCTATATATATTT-
1 GCACTTAGTGTGCGAGATCGAGATAGCTTCAGCTATATATATTTG
*
61758253 GCACTTAGTGTGCGAGATCGAGATAGCTTCGGCTATATATATATATTG
1 GCACTTAGTGTGCGAGATCGAGATAGCTTCAGC--TATATATAT-TTG
* * * * *
61758301 GCACTTGGTGTGTGAGATTGATATAGCTTCAG--ATATTTATTTG
1 GCACTTAGTGTGCGAGATCGAGATAGCTTCAGCTATATATATTTG
*
61758344 GCACTAAGTGTGCGAG
1 GCACTTAGTGTGCGAG
61758360 TTTTTTGAGT
Statistics
Matches: 90, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
43 16 0.18
44 36 0.40
46 9 0.10
47 2 0.02
48 27 0.30
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (45 bp):
GCACTTAGTGTGCGAGATCGAGATAGCTTCAGCTATATATATTTG
Found at i:61773581 original size:44 final size:44
Alignment explanation
Indices: 61773514--61773598 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
61773504 TAATTATGTG
* *
61773514 CACTTAGTGTGCAAAATCAAGATAGCTTCATCTATATATATTTA
1 CACTTAGTGCGCAAAATCAAGATAGCTTCAGCTATATATATTTA
* * * *
61773558 CACTTAGTGCGCGAGATCGAGATAGCTTCGGCTATATATAT
1 CACTTAGTGCGCAAAATCAAGATAGCTTCAGCTATATATAT
61773599 ATTGGGACTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (44 bp):
CACTTAGTGCGCAAAATCAAGATAGCTTCAGCTATATATATTTA
Found at i:61775468 original size:19 final size:20
Alignment explanation
Indices: 61775438--61775482 Score: 83
Period size: 19 Copynumber: 2.3 Consensus size: 20
61775428 CATACGAGTA
61775438 CATAATACGTACCTGGCCAT
1 CATAATACGTACCTGGCCAT
61775458 CATAA-ACGTACCTGGCCAT
1 CATAATACGTACCTGGCCAT
61775477 CATAAT
1 CATAAT
61775483 GTATCATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.24
Consensus pattern (20 bp):
CATAATACGTACCTGGCCAT
Found at i:61775661 original size:38 final size:38
Alignment explanation
Indices: 61775596--61775861 Score: 325
Period size: 38 Copynumber: 6.9 Consensus size: 38
61775586 CACTAGAACT
* * * * *
61775596 AAGCCTGCGAGACTTTAAGCTCAGATATAATACCAACACT
1 AAGCCTGCGGGA-TTTAA-CCCGGATATAATACCAGCACG
* * * * *
61775636 AGGCCTACAGGATTTAACCCGGATATAATTCCAGCATG
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
*
61775674 AAGCCTGCGGGATTTAACCCGGATATAATTCCAGCACG
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
* *
61775712 AAGCCTGCGGGATTTAACCCGGATATATTACCAACACG
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
* * *
61775750 AAGCCTACGGGATTTAACCCAGATATAATTCCAGCACG
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
* *
61775788 AAGCCTGCGGGATTTAACCCGGATATATTACCAGCACA
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
* * *
61775826 AAGCTTGTGGGATTTAACCCGGATATAATTCCAGCA
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAGCA
61775862 TATAGTCTGC
Statistics
Matches: 195, Mismatches: 31, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
38 182 0.93
39 5 0.03
40 8 0.04
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (38 bp):
AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
Found at i:61775822 original size:114 final size:114
Alignment explanation
Indices: 61775596--61775854 Score: 376
Period size: 114 Copynumber: 2.3 Consensus size: 114
61775586 CACTAGAACT
* * * * * *
61775596 AAGCCTGCGAGACTTTAAGCTCAGATATAATACCAACACTAGGCCTACAGGATTTAACCCGGATA
1 AAGCCTGCGGGA-TTTAA-CCCGGATATAATACCAACACGAAGCCTACAGGATTTAACCCAGATA
* *
61775661 TAATTCCAGCATGAAGCCTGCGGGATTTAACCCGGATATAATTCCAGCACG
64 TAATTCCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCCAGCACA
* *
61775712 AAGCCTGCGGGATTTAACCCGGATATATTACCAACACGAAGCCTACGGGATTTAACCCAGATATA
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAACACGAAGCCTACAGGATTTAACCCAGATATA
61775777 ATTCCAGCACGAAGCCTGCGGGATTTAACCCGGATAT-ATTACCAGCACA
66 ATTCCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATT-CCAGCACA
* *
61775826 AAGCTTGTGGGATTTAACCCGGATATAAT
1 AAGCCTGCGGGATTTAACCCGGATATAAT
61775855 TCCAGCATAT
Statistics
Matches: 129, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
113 3 0.02
114 110 0.85
115 5 0.04
116 11 0.09
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.23
Consensus pattern (114 bp):
AAGCCTGCGGGATTTAACCCGGATATAATACCAACACGAAGCCTACAGGATTTAACCCAGATATA
ATTCCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCCAGCACA
Found at i:61785198 original size:19 final size:20
Alignment explanation
Indices: 61785168--61785212 Score: 83
Period size: 19 Copynumber: 2.3 Consensus size: 20
61785158 CATACGAGTA
61785168 CATAATACGTACCTGGCCAT
1 CATAATACGTACCTGGCCAT
61785188 CATAA-ACGTACCTGGCCAT
1 CATAATACGTACCTGGCCAT
61785207 CATAAT
1 CATAAT
61785213 GTATCATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.24
Consensus pattern (20 bp):
CATAATACGTACCTGGCCAT
Found at i:61785391 original size:38 final size:38
Alignment explanation
Indices: 61785326--61785620 Score: 313
Period size: 38 Copynumber: 7.7 Consensus size: 38
61785316 CACTAGAACT
* * * * *
61785326 AAGCCTGCGAGACTTTAAGCTCAGATATAATACCAACACT
1 AAGCCTGCGGGA-TTTAA-CCCGGATATAATACCAGCACG
* * * * * *
61785366 AGGCCTACAGGATTTAACCCGGATATAATTCTAGCATG
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
* * *
61785404 AAGCCTGCGGGATTTAACCCAGATATAATTCTAGCACG
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
* *
61785442 AAGCCTGCGGGATTTAACCCGGATATATTACCAACACG
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
* *
61785480 AAGCCTGTGGGATTTAACCCGGATATAATTCCAGCACG
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
* *
61785518 AAGCCTGCGGGATTTAACCCGGATATATTACCAGCACA
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
* * * *
61785556 AAGCTTGTGGGATTTAACCCGGATATAATTCCAGCA-T
1 AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
*
61785593 ATAGCCTGCGGGTCTTTAAGCCCGGATA
1 A-AGCCTGCGGG-ATTTAA-CCCGGATA
61785621 CACATCAAAT
Statistics
Matches: 215, Mismatches: 37, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
37 1 0.00
38 188 0.87
39 10 0.05
40 16 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (38 bp):
AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACG
Found at i:61789449 original size:6 final size:6
Alignment explanation
Indices: 61789419--61789537 Score: 57
Period size: 6 Copynumber: 19.3 Consensus size: 6
61789409 AAGAAACATT
* * *
61789419 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
61789468 ATCAGA ATAAAA ATTAG- GTGACAGA ATTAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
61789519 A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
61789538 GTGAATGCAA
Statistics
Matches: 83, Mismatches: 19, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
5 5 0.06
6 66 0.80
7 9 0.11
8 3 0.04
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:61789473 original size:25 final size:25
Alignment explanation
Indices: 61789440--61789509 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
61789430 AATCAAAATG
61789440 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* * *
61789465 AGAATCAGAATAAAAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
61789490 AGAATTAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
61789510 TATCAGGTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.49, C:0.11, G:0.21, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:61789523 original size:31 final size:30
Alignment explanation
Indices: 61789440--61789537 Score: 107
Period size: 31 Copynumber: 3.4 Consensus size: 30
61789430 AATCAAAATG
61789440 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAG-ATCAGGTGACAGAATC
* *
61789471 AGAAT-A-AA--A-ATTAGGTGACAGAATT
1 AGAATCAGAATCAGATCAGGTGACAGAATC
*
61789496 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAG-ATCAGGTGACAGAATC
*
61789527 AAAATCAGAAT
1 AGAATCAGAAT
61789538 GTGAATGCAA
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
25 19 0.35
26 1 0.02
27 3 0.05
29 3 0.05
30 1 0.02
31 28 0.51
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.19
Consensus pattern (30 bp):
AGAATCAGAATCAGATCAGGTGACAGAATC
Found at i:61795058 original size:76 final size:79
Alignment explanation
Indices: 61794909--61795061 Score: 233
Period size: 76 Copynumber: 2.0 Consensus size: 79
61794899 CGGGATGAAT
*
61794909 ACCATGTATACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTCGCATGGGTGATACTATGTG
1 ACCATGTAGACAAGAGAGCTACGAGA-ATTATGAGGTAGCTAGGTCGCATGGGTGATACTATGTG
*
61794974 TTTCCCATGTAGTAC
65 TTACCCATGTAGTAC
*
61794989 ACCATGTAGACAAGAGAGCTACGAG-A-TAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTG-
1 ACCATGTAGACAAGAGAGCTACGAGAATTATGAGGTAGCTAGGTCGCATGGGTGATACTATGTGT
61795050 TACACCATGTAG
66 TAC-CCATGTAG
61795062 ACAAGAGAGC
Statistics
Matches: 69, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
75 2 0.03
76 39 0.57
77 3 0.04
78 1 0.01
80 24 0.35
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (79 bp):
ACCATGTAGACAAGAGAGCTACGAGAATTATGAGGTAGCTAGGTCGCATGGGTGATACTATGTGT
TACCCATGTAGTAC
Found at i:61795059 original size:64 final size:63
Alignment explanation
Indices: 61794980--61795201 Score: 212
Period size: 64 Copynumber: 3.4 Consensus size: 63
61794970 TGTGTTTCCC
61794980 ATGTAGTACACCATGTAGACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGATACT
1 ATGT-GTACACCATGTAGACAAGAGAGCTACGAGATA-ATGTAGCTAGGTCGCATGGGTGATACT
* * * * * * *
61795045 ATGTGTACACCATGTAGACAAGAGAGCTATGAGATAAATGTTGCTAGGTTGCATGTGTGGTTCCA
1 ATGTGTACACCATGTAGACAAGAGAGCTACGAGAT-AATGTAGCTAGGTCGCATGGGT-GATACT
* * * * * * * * *
61795110 AGTGAAGGACACCATGTAAACAAGAGAGCTACGAGATAAAGTGGCTAGGTCACGTGGGTGGTAGT
1 A-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATAATGTAGCTAGGTCGCATGGGTGATACT
* *
61795175 AAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTGTACACCATGTAG-ACAAGAGAGC
61795202 CAAAATTATG
Statistics
Matches: 126, Mismatches: 26, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
63 19 0.15
64 49 0.39
65 12 0.10
66 18 0.14
67 28 0.22
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (63 bp):
ATGTGTACACCATGTAGACAAGAGAGCTACGAGATAATGTAGCTAGGTCGCATGGGTGATACT
Found at i:61799620 original size:68 final size:65
Alignment explanation
Indices: 61799408--61799658 Score: 210
Period size: 64 Copynumber: 3.8 Consensus size: 65
61799398 ATATAGTTCG
* * *
61799408 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CATTTA-TCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATTCTCGT
61799469 A
65 A
* * * * *
61799470 GCTCT-TTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATA-TCCC
1 GCTCTCTTGTCTACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTACATATATTCTC
61799533 GTA
63 GTA
* * *
61799536 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTT
1 GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCTC
61799601 GTA
63 GTA
* * * * * ** *
61799604 GCTCTCTTGTAC-ACATGATGTGCACTCAGCACTATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATA
61799659 CCATCTGTAT
Statistics
Matches: 151, Mismatches: 26, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
60 1 0.01
61 12 0.08
62 5 0.03
64 51 0.34
65 2 0.01
66 17 0.11
67 15 0.10
68 47 0.31
69 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATTCTCGTA
Found at i:61800357 original size:30 final size:30
Alignment explanation
Indices: 61800323--61800383 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
61800313 TCCTTAACTC
61800323 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
61800353 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
61800383 A
1 A
61800384 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:61808722 original size:40 final size:39
Alignment explanation
Indices: 61808686--61808792 Score: 126
Period size: 39 Copynumber: 2.7 Consensus size: 39
61808676 ATATCCGGAC
*
61808686 TAAGATCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
* * * *
61808726 TAAG-CACGAAGGCATTTGTGTGAGTTACTAAACCCGGGT
1 TAAGTC-CGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
*
61808765 TAAGTCCCGAAGGCATTCGTACGAGTTA
1 TAAGT-CCGAAGGCATTCGTGCGAGTTA
61808793 CTATAACCGG
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.02
39 32 0.57
40 22 0.39
41 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
Found at i:61808793 original size:40 final size:40
Alignment explanation
Indices: 61808692--61808830 Score: 156
Period size: 40 Copynumber: 3.5 Consensus size: 40
61808682 GGACTAAGAT
* * *
61808692 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* * *
61808731 ACGAAGGCATTTGTGTGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* * *
61808771 CCGAAGGCATTCGTACGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTC
* *
61808811 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
61808831 CGTTATATCC
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 32 0.39
40 42 0.51
41 9 0.11
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:61814471 original size:49 final size:49
Alignment explanation
Indices: 61814399--61814563 Score: 285
Period size: 49 Copynumber: 3.4 Consensus size: 49
61814389 TTGCCCTTCG
* * * *
61814399 GGCCTTATCACATATATACACACTTCCACATCCATCACGTCGGCCACTA
1 GGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTA
61814448 GGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTA
*
61814497 GGCCTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTA
1 GGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTA
61814546 GGCCTTATCACATATATA
1 GGCCTTATCACATATATA
61814564 TATCTCATAC
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 111 1.00
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (49 bp):
GGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTA
Found at i:61819912 original size:49 final size:49
Alignment explanation
Indices: 61819806--61820041 Score: 262
Period size: 48 Copynumber: 4.8 Consensus size: 49
61819796 TAGCCAAAGC
* * * *
61819806 TATCTGGTACGCATAGTAGCCTGCACATAGTA-TACACATGA-GACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA-CATGACCAAT
*
61819854 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCAAT
* * *
61819903 TATCTGGTACACGTAGTAG-CTTCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACC-AAT
* * * *
61819952 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCATAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCA-A-T
* * * * *
61820003 TTTCGGGTACGCATAGTAGCCTGCACTTAGTAGTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
61820042 TGCGACCTCA
Statistics
Matches: 161, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
48 53 0.33
49 51 0.32
50 25 0.16
51 32 0.20
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCAAT
Found at i:61819981 original size:98 final size:101
Alignment explanation
Indices: 61819806--61820041 Score: 284
Period size: 98 Copynumber: 2.4 Consensus size: 101
61819796 TAGCCAAAGC
* * * * * ** * *
61819806 TATCTGGTACGCATAGTAGCCTGCACATAGTA-TACACATGAGACC-AATTATCCGGTACACGTA
1 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
61819869 GTAGCCTGCACTTAGTACTACACACATGACCA-A-T
66 GTAGCCTGCACTTAGTACTACACACATGACCATAGT
* * *
61819903 TATCTGGTACACGTAGTAG-CTTCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
* *
61819967 GTAGCCTGCACTTAGTACTACACACGTGATCATAGT
66 GTAGCCTGCACTTAGTACTACACACATGACCATAGT
* * *
61820003 TTTCGGGTACGCATAGTAGCCTGCACTTAGTAGTACACA
1 TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACA
61820042 TGCGACCTCA
Statistics
Matches: 116, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
96 10 0.09
97 28 0.24
98 44 0.38
99 1 0.01
100 16 0.14
101 17 0.15
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (101 bp):
TATCGGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
GTAGCCTGCACTTAGTACTACACACATGACCATAGT
Found at i:61822223 original size:15 final size:15
Alignment explanation
Indices: 61822167--61822231 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
61822157 TAAAGATAAC
*
61822167 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
61822181 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
61822196 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
61822211 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
61822226 AAGAAA
1 AAGAAA
61822232 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:61822233 original size:30 final size:31
Alignment explanation
Indices: 61822167--61822235 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
61822157 TAAAGATAAC
*
61822167 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
61822197 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
61822226 AAGAAACCCA
1 AAGAAACCCA
61822236 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:61825346 original size:49 final size:49
Alignment explanation
Indices: 61825233--61825468 Score: 305
Period size: 49 Copynumber: 4.8 Consensus size: 49
61825223 TAGCCAAAGC
* * * *
61825233 TATCTGGTACGCATAGTAGCCTGCACATAGTAC-ACACA-GCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
61825280 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
61825329 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * *
61825379 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * *
61825430 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
61825469 TGCGACCTCA
Statistics
Matches: 167, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
47 30 0.18
48 5 0.03
49 53 0.32
50 43 0.26
51 35 0.21
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:61825476 original size:101 final size:98
Alignment explanation
Indices: 61825233--61825476 Score: 321
Period size: 101 Copynumber: 2.5 Consensus size: 98
61825223 TAGCCAAAGC
* * ** *
61825233 TATCTGGTACGCATAGTAGCCTGCACATAGTAC-ACACAGCGACC-AATTATCCGGTACACATAG
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACAGCGACCTAACCATCCGATACACATAG
61825296 TAGCCTGCACTTAGTACTACACACGTGACCAAT
66 TAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * * *
61825329 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACA-GCGACCTAACCATCCGATACACATA
*
61825394 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* *
61825430 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACA-GCGACCT
61825477 CACAATAGAT
Statistics
Matches: 126, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
96 29 0.23
97 5 0.04
98 5 0.04
99 42 0.33
100 1 0.01
101 44 0.35
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (98 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACAGCGACCTAACCATCCGATACACATAG
TAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:61827369 original size:20 final size:20
Alignment explanation
Indices: 61827344--61827395 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
61827334 GAGGCAATGC
*
61827344 ACACGCCCGTGTGCTTCGGG
1 ACACGCCCGTGTACTTCGGG
* *
61827364 ACACGCTCGTGTACTTTGGG
1 ACACGCCCGTGTACTTCGGG
*
61827384 ACACGCCTGTGT
1 ACACGCCCGTGT
61827396 CTCATACCCG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.13, C:0.31, G:0.31, T:0.25
Consensus pattern (20 bp):
ACACGCCCGTGTACTTCGGG
Found at i:61828959 original size:45 final size:45
Alignment explanation
Indices: 61828853--61829004 Score: 155
Period size: 45 Copynumber: 3.4 Consensus size: 45
61828843 CATTCATGAT
* * * * ** * *
61828853 GAACTCGGACCAACTCAACGAGCTCAGATGCTT-GCATCCATAAT
1 GAACTAGGACCAACTCAACAAGCTCGGATGCTTCACATATATCAC
*
61828897 GAACTCGGACCAACTCAACAAGCTCGGATGCTTCACATATATCAC
1 GAACTAGGACCAACTCAACAAGCTCGGATGCTTCACATATATCAC
* * * *
61828942 GACCTTGGACCAACTCAACAAGTTCGGAT-TTCTCACATATATCAC
1 GAACTAGGACCAACTCAACAAGCTCGGATGCT-TCACATATATCAC
*
61828987 GAACTAGGACCAAATCAA
1 GAACTAGGACCAACTCAA
61829005 TGAGCTCAAA
Statistics
Matches: 92, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
44 32 0.35
45 60 0.65
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (45 bp):
GAACTAGGACCAACTCAACAAGCTCGGATGCTTCACATATATCAC
Found at i:61830880 original size:44 final size:44
Alignment explanation
Indices: 61830813--61830947 Score: 188
Period size: 40 Copynumber: 3.1 Consensus size: 44
61830803 CTAAGTCCGG
* *
61830813 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAT
* *
61830857 ATATATTACCAGTACGAAACCTGCGGGATTTAACCCGG----AT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAT
*
61830897 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGTATATAT
1 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAT
61830941 ATTATAT
1 A-TATAT
61830948 CGAGAGCTAA
Statistics
Matches: 79, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
40 37 0.47
44 37 0.47
45 5 0.06
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (44 bp):
ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAT
Found at i:61839208 original size:47 final size:44
Alignment explanation
Indices: 61839145--61839305 Score: 180
Period size: 46 Copynumber: 3.5 Consensus size: 44
61839135 CCAATGCCAA
*
61839145 GTCCTAGACATAGTCTTACACTGGTTCATATCTC-AAGTCGATGCCAT
1 GTCCCAGACAT-GTCTTACACTGGTT-ATATCTCGAAG-CGATG-CAT
** *
61839192 GTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCTGATGCAT
1 GTCCCAGACAT-GTCTTACACTGGTTAT-ATCTCGAAGC-GATGCAT
* *
61839239 GTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATGCAT
1 GTCCCAGACATGTCTTACACTGG-TTATATCTCGAAG-CGATGCAT
61839285 GTCCCAGACATGTCTTACACT
1 GTCCCAGACATGTCTTACACT
61839306 AGCACTCGTC
Statistics
Matches: 99, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
46 48 0.48
47 45 0.45
48 6 0.06
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (44 bp):
GTCCCAGACATGTCTTACACTGGTTATATCTCGAAGCGATGCAT
Found at i:61839271 original size:46 final size:47
Alignment explanation
Indices: 61839145--61839399 Score: 179
Period size: 47 Copynumber: 5.5 Consensus size: 47
61839135 CCAATGCCAA
* * * *
61839145 GTCCTAGACATAGTCTTACACTGG-TTCATATCTC-AAG-TCGATGCCAT
1 GTCCCAGACATGGTCTTACACTGGCTT-ACATCTCGTAGCT-GATG-CAT
*
61839192 GTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAGCTGATGCAT
1 GTCCCAGACATGGTCTTACACTGGCTTA-CATCTCGTAGCTGATGCAT
*
61839239 GTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGCCGATGCAT
1 GTCCCAGACATGGTCTTACACTGGCTTACATCTCGTA-GCTGATGCAT
* * * * * ** *
61839285 GTCCCAGACAT-GTCTTACACTAGCACT-CGTCTCATTGCATTTTCCAT
1 GTCCCAGACATGGTCTTACACTGGC-TTACATCTCGTAGC-TGATGCAT
* * * * * *
61839332 GTCCCAGACATGGTCTTACACTAGCTTCCATAAT-GTGGCCGATACAT
1 GTCCCAGACATGGTCTTACACTGGCTTACAT-CTCGTAGCTGATGCAT
*
61839379 GTCCCAGACGT-GTCTTACACT
1 GTCCCAGACATGGTCTTACACT
61839400 AGCACACACA
Statistics
Matches: 170, Mismatches: 26, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
45 1 0.01
46 69 0.41
47 74 0.44
48 24 0.14
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (47 bp):
GTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCTGATGCAT
Found at i:61843729 original size:25 final size:25
Alignment explanation
Indices: 61843701--61843785 Score: 134
Period size: 25 Copynumber: 3.4 Consensus size: 25
61843691 AAAAAGGCTA
*
61843701 TGCCCCAGTTTACCGAGAAGGGTTT
1 TGCCCCAGTTTACCGAAAAGGGTTT
*
61843726 TGCCCCAGTTTACCGAAAAGGGCTT
1 TGCCCCAGTTTACCGAAAAGGGTTT
* *
61843751 TGCCCCAGTTTATCAAAAAGGGTTT
1 TGCCCCAGTTTACCGAAAAGGGTTT
61843776 TGCCCCAGTT
1 TGCCCCAGTT
61843786 ATTAAAAGAG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (25 bp):
TGCCCCAGTTTACCGAAAAGGGTTT
Found at i:61843756 original size:50 final size:50
Alignment explanation
Indices: 61843691--61843785 Score: 145
Period size: 50 Copynumber: 1.9 Consensus size: 50
61843681 GAGGAAGTGC
* *
61843691 AAAAAGGCTATGCCCCAGTTTACCGAGAAGGGTTTTGCCCCAGTTTACCG
1 AAAAAGGCTATGCCCCAGTTTACCAAAAAGGGTTTTGCCCCAGTTTACCG
* * *
61843741 AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGTTTTGCCCCAGTT
1 AAAAAGGCTATGCCCCAGTTTACCAAAAAGGGTTTTGCCCCAGTT
61843786 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (50 bp):
AAAAAGGCTATGCCCCAGTTTACCAAAAAGGGTTTTGCCCCAGTTTACCG
Found at i:61844040 original size:30 final size:31
Alignment explanation
Indices: 61844006--61844088 Score: 125
Period size: 30 Copynumber: 2.7 Consensus size: 31
61843996 CGTTTACAGT
*
61844006 AAAGGCTTCGGCCTAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
61844036 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
61844067 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
61844089 TTGAGATTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 25 0.52
31 23 0.48
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:61844071 original size:31 final size:30
Alignment explanation
Indices: 61844006--61844083 Score: 120
Period size: 31 Copynumber: 2.6 Consensus size: 30
61843996 CGTTTACAGT
* *
61844006 AAAGGCTTCGGCCTAGTGATATGATAATGA
1 AAAGGCTTCGGCCCAGTGACATGATAATGA
*
61844036 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATG-ATAATGA
61844067 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
61844084 ATATGTTGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 21 0.48
31 23 0.52
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTGACATGATAATGA
Found at i:61848539 original size:29 final size:29
Alignment explanation
Indices: 61848507--61848579 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
61848497 CTTCGAGCTC
*
61848507 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
61848536 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
61848565 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
61848580 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:61856398 original size:29 final size:29
Alignment explanation
Indices: 61856356--61856420 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
61856346 CTCGCCACCC
*
61856356 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
61856385 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
61856414 AGTGCCA
1 AGTGCCA
61856421 ATCTCGTCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:61859811 original size:40 final size:40
Alignment explanation
Indices: 61859732--61859908 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
61859722 CGGATGATAA
* * * *
61859732 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
61859772 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
61859812 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
61859852 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
61859892 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
61859909 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.12
40 102 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:61867837 original size:39 final size:40
Alignment explanation
Indices: 61867710--61867885 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
61867700 CGGATGATAA
* * **
61867710 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * *
61867750 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATAT
61867790 CCGGGCTAAGACCCGAAGGCATTT-TGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* *
61867829 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
61867869 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
61867886 ATACTTGGGT
Statistics
Matches: 119, Mismatches: 13, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 49 0.41
40 69 0.58
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:61867847 original size:79 final size:80
Alignment explanation
Indices: 61867710--61867885 Score: 243
Period size: 79 Copynumber: 2.2 Consensus size: 80
61867700 CGGATGATAA
* * * *
61867710 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
61867775 TGCTAG-TGATTATAT
66 TGCGAGTTG-TTATAT
* *
61867790 CCGGGCTAAGACCCGAAGGCATT-TTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
61867854 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
61867869 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
61867886 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
77 1 0.01
78 13 0.15
79 50 0.57
80 23 0.26
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGTTATAT
Found at i:61875569 original size:40 final size:39
Alignment explanation
Indices: 61875533--61875639 Score: 160
Period size: 39 Copynumber: 2.7 Consensus size: 39
61875523 ATATCCGGAC
61875533 TAAGATCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
* * * *
61875573 TAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
61875612 TAAGTCCCGAAGGCATTCGTGCGAGTTA
1 TAAGT-CCGAAGGCATTCGTGCGAGTTA
61875640 CTATAACCGG
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.58
40 25 0.42
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
Found at i:61875640 original size:40 final size:40
Alignment explanation
Indices: 61875539--61875677 Score: 192
Period size: 40 Copynumber: 3.5 Consensus size: 40
61875529 GGACTAAGAT
* *
61875539 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
*
61875578 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* *
61875618 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTC
* *
61875658 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
61875678 CGTTATATCC
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.39
40 46 0.51
41 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:61875701 original size:79 final size:79
Alignment explanation
Indices: 61875538--61875703 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
61875528 CGGACTAAGA
* *
61875538 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCACTA
*
61875603 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * * *
61875617 CCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTCCCGAAGGCATTTGAGCGAGTCG
1 TCCGAAGGCATTCGTGCGAGTTAATA-AATCC-GGGTTAAG-CCCGAAGGCATTTGAGCGAGTCA
* * *
61875680 TTATATCC-GGTTAAAT
63 CTAAACCCGGGTTAAAT
61875696 TCCGAAGG
1 TCCGAAGG
61875704 TACGTGATTC
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
79 41 0.56
80 32 0.44
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCACTA
AACCCGGGTTAAAT
Found at i:61887682 original size:40 final size:40
Alignment explanation
Indices: 61887586--61887721 Score: 168
Period size: 40 Copynumber: 3.4 Consensus size: 40
61887576 CTAAGATCCA
* * *
61887586 AAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-CCCG
1 AAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTCCCG
* *
61887625 AAGGCATTTGTGTGAGTTACTAAACCCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTCCCG
* *
61887665 AAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTCCCG
1 AAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTCCCG
* *
61887705 AAGGCATTTGAGCGAGT
1 AAGGCATTCGTGCGAGT
61887722 CATTATATCC
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 30 0.36
40 45 0.54
41 9 0.11
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
AAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTCCCG
Found at i:61892235 original size:42 final size:44
Alignment explanation
Indices: 61892150--61892297 Score: 137
Period size: 44 Copynumber: 3.4 Consensus size: 44
61892140 ACGTCCTGAC
*** * * * *
61892150 GTGGTCTTACATGTAATCAAATATTGATGCCACTTTCCTAGACA
1 GTGGTCTTACACAAAATCAAATAGTGATGCCAATGTCCCAGACA
61892194 GT-GTCTTACACAAAATCAAATA-TGATGCCAATGTCCCAGACA
1 GTGGTCTTACACAAAATCAAATAGTGATGCCAATGTCCCAGACA
* *
61892236 -TGGTCTTACACGTAAAT--AATAAGTCGATGCCAATGTCCCAGGC-
1 GTGGTCTTACAC-AAAATCAAAT-AGT-GATGCCAATGTCCCAGACA
*
61892279 GTGGTCTTACACGAAATCA
1 GTGGTCTTACACAAAATCA
61892298 CATATCGGAT
Statistics
Matches: 87, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
41 4 0.05
42 27 0.31
43 26 0.30
44 30 0.34
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (44 bp):
GTGGTCTTACACAAAATCAAATAGTGATGCCAATGTCCCAGACA
Found at i:61900476 original size:48 final size:48
Alignment explanation
Indices: 61900404--61900635 Score: 302
Period size: 48 Copynumber: 4.8 Consensus size: 48
61900394 TCTCATATCG
* * * * ** *
61900404 ATGCCATGTCCCAAACACGGTCTTACACGAAATCACATATCGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCA
* * * *
61900452 ATGCCATATCTCAGATAGGGTCTTACATGGGATCTCATATCGATACCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCA
* * *
61900500 ATGCCATGTCCCGGACATGGTCTTACATGGGATCTCATATAGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCA
*
61900548 ATGCCATATCCCAGACATGGTCTTACATTGGATCTCATATCGATGCCA
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCA
* * *
61900596 ATGCCATGTCCCAAATATGGTCTTACATGGGATCTCATAT
1 ATGCCATATCCCAGACATGGTCTTACATGGGATCTCATAT
61900636 AACCCTAATG
Statistics
Matches: 159, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 159 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGCCATATCCCAGACATGGTCTTACATGGGATCTCATATCGATGCCA
Found at i:61900539 original size:96 final size:96
Alignment explanation
Indices: 61900404--61900636 Score: 340
Period size: 96 Copynumber: 2.4 Consensus size: 96
61900394 TCTCATATCG
* * ** * * * *
61900404 ATGCCATGTCCCAAACACGGTCTTACACGAAATCACATATCGATGCCAATGCCATATCTCAGATA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCTCATATAGATGCCAATGCCATATCCCAGACA
61900469 GGGTCTTACATGGGATCTCATATCGATACCA
66 GGGTCTTACATGGGATCTCATATCGATACCA
**
61900500 ATGCCATGTCCCGGACATGGTCTTACATGGGATCTCATATAGATGCCAATGCCATATCCCAGACA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCTCATATAGATGCCAATGCCATATCCCAGACA
* * *
61900565 TGGTCTTACATTGGATCTCATATCGATGCCA
66 GGGTCTTACATGGGATCTCATATCGATACCA
*
61900596 ATGCCATGTCCCAAATATGGTCTTACATGGGATCTCATATA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCTCATATA
61900637 ACCCTAATGT
Statistics
Matches: 121, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 121 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAAACATGGTCTTACATGGGATCTCATATAGATGCCAATGCCATATCCCAGACA
GGGTCTTACATGGGATCTCATATCGATACCA
Found at i:61904513 original size:46 final size:46
Alignment explanation
Indices: 61904463--61904638 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
61904453 TATTTGGGCA
61904463 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
61904509 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
61904556 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
61904602 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61904639 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:61904618 original size:93 final size:93
Alignment explanation
Indices: 61904459--61904630 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61904449 TGGATATTTG
* *
61904459 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
61904524 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
61904552 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
61904617 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
61904631 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:61907603 original size:15 final size:15
Alignment explanation
Indices: 61907583--61907651 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
61907573 GTATCTTGGG
61907583 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
61907598 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
61907613 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
61907628 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
61907643 TTTCTTTAT
1 TTTCTTTAT
61907652 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:61907652 original size:30 final size:30
Alignment explanation
Indices: 61907574--61907661 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
61907564 CATAGTATCG
* * * *
61907574 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
61907604 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
61907634 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
61907662 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:61910096 original size:46 final size:46
Alignment explanation
Indices: 61910046--61910221 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
61910036 TATTTGGGCA
61910046 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
61910092 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
61910139 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
61910185 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61910222 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:61910201 original size:93 final size:93
Alignment explanation
Indices: 61910042--61910213 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61910032 TGGATATTTG
* *
61910042 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
61910107 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
61910135 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
61910200 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
61910214 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:61914991 original size:48 final size:48
Alignment explanation
Indices: 61914920--61915152 Score: 268
Period size: 48 Copynumber: 4.9 Consensus size: 48
61914910 TCTCATATCG
* ** * *
61914920 ATGCCATGTCCCAAACATGGTCTTACACGAAATCACATATTGATGCTA
1 ATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATATAGATGCTA
* * * * * *
61914968 ATGCCATATCCCATATATGGTCTTATAGGGGATCTCATATCGATGCTA
1 ATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATATAGATGCTA
* * *
61915016 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTTATAGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATATAGATGCTA
* * * *
61915064 ATGCCATGTCCCAGACATGGTCTTACATGGGACCTCATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATATAGATGCTA
* * * *
61915112 ATGTCATGTCCCAAACATGGTCTTACATGGGATCACATATA
1 ATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATATA
61915153 ACCCTAATGT
Statistics
Matches: 160, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 160 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATATAGATGCTA
Found at i:61915061 original size:96 final size:96
Alignment explanation
Indices: 61914920--61915152 Score: 322
Period size: 96 Copynumber: 2.4 Consensus size: 96
61914910 TCTCATATCG
* ** * * * *
61914920 ATGCCATGTCCCAAACATGGTCTTACACGAAATCACATATTGATGCTAATGCCATATCCCATATA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATAGATGCCAATGCCATATCCCAGACA
* * *
61914985 TGGTCTTATAGGGGATCTCATATCGATGCTA
66 TGGTCTTACAGGGGACCTCATATCGATGCCA
* * * *
61915016 ATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTTATAGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATAGATGCCAATGCCATATCCCAGACA
*
61915081 TGGTCTTACATGGGACCTCATATCGATGCCA
66 TGGTCTTACAGGGGACCTCATATCGATGCCA
*
61915112 ATGTCATGTCCCAAACATGGTCTTACATGGGATCACATATA
1 ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATA
61915153 ACCCTAATGT
Statistics
Matches: 118, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 118 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (96 bp):
ATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATAGATGCCAATGCCATATCCCAGACA
TGGTCTTACAGGGGACCTCATATCGATGCCA
Found at i:61915748 original size:21 final size:22
Alignment explanation
Indices: 61915718--61915758 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
61915708 TAGTAAAAGT
61915718 CATTTCTCTAACAATAAACATG
1 CATTTCTCTAACAATAAACATG
* *
61915740 CATTT-TCTACCATTAAACA
1 CATTTCTCTAACAATAAACA
61915759 CAAAAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.39, C:0.24, G:0.02, T:0.34
Consensus pattern (22 bp):
CATTTCTCTAACAATAAACATG
Found at i:61918738 original size:15 final size:16
Alignment explanation
Indices: 61918710--61918739 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
61918700 ATGATATGAA
61918710 ATGTTTGCATTTTTAT
1 ATGTTTGCATTTTTAT
61918726 ATGTTTG-ATTTTTA
1 ATGTTTGCATTTTTA
61918740 AACTCCAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.20, C:0.03, G:0.13, T:0.63
Consensus pattern (16 bp):
ATGTTTGCATTTTTAT
Found at i:61921234 original size:24 final size:24
Alignment explanation
Indices: 61921202--61921371 Score: 254
Period size: 24 Copynumber: 7.2 Consensus size: 24
61921192 GCCTAGCCTT
* *
61921202 TTTTAATAACTGGGGCAAAAGCCC
1 TTTTGATAACTGGGGCATAAGCCC
* *
61921226 TTTTTATAACTGAGGCATAAGCCC
1 TTTTGATAACTGGGGCATAAGCCC
* *
61921250 -TTTAATAACTGGGGCGTAAGCCC
1 TTTTGATAACTGGGGCATAAGCCC
61921273 TTTTGATAACTGGGGCATAAGCCC
1 TTTTGATAACTGGGGCATAAGCCC
*
61921297 TTTTGATAACTGAGGCATAAGCCC
1 TTTTGATAACTGGGGCATAAGCCC
61921321 TTTTGATAACTGGGGCATAAGCCC
1 TTTTGATAACTGGGGCATAAGCCC
*
61921345 -TTTAATAACTGGGGCATAAGCCC
1 TTTTGATAACTGGGGCATAAGCCC
61921368 TTTT
1 TTTT
61921372 TCACTTCCTC
Statistics
Matches: 133, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
23 42 0.32
24 91 0.68
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
TTTTGATAACTGGGGCATAAGCCC
Found at i:61921257 original size:47 final size:47
Alignment explanation
Indices: 61921203--61921371 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
61921193 CCTAGCCTTT
* * *
61921203 TTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGAGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
61921250 TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
* *
61921297 TTTTGATAACTGAGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
61921345 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
61921372 TCACTTCCTC
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 68 0.61
48 44 0.39
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:61921295 original size:71 final size:72
Alignment explanation
Indices: 61921202--61921372 Score: 283
Period size: 71 Copynumber: 2.4 Consensus size: 72
61921192 GCCTAGCCTT
* *
61921202 TTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGAGGCATAAGCCC-TTTAATAACTGGGGCG
1 TTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGAGGCATAAGCCCTTTTAATAACTGGGGCA
61921266 TAAGCCC
66 TAAGCCC
* * *
61921273 TTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGAGGCATAAGCCCTTTTGATAACTGGGGCA
1 TTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGAGGCATAAGCCCTTTTAATAACTGGGGCA
61921338 TAAGCCC
66 TAAGCCC
61921345 -TTTAATAACTGGGGCATAAGCCCTTTTT
1 TTTTAATAACTGGGGCATAAGCCCTTTTT
61921373 CACTTCCTCC
Statistics
Matches: 92, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
71 71 0.77
72 21 0.23
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (72 bp):
TTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGAGGCATAAGCCCTTTTAATAACTGGGGCA
TAAGCCC
Found at i:61921444 original size:9 final size:9
Alignment explanation
Indices: 61921430--61921486 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
61921420 ATCTCGTGTG
61921430 CATATCATA
1 CATATCATA
*
61921439 CATATCATGTG
1 CATATCA--TA
61921450 CATATCATA
1 CATATCATA
* *
61921459 CATGTCATGTG
1 CATATCA--TA
61921470 CATATCATA
1 CATATCATA
61921479 CATATCAT
1 CATATCAT
61921487 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:61921449 original size:20 final size:20
Alignment explanation
Indices: 61921426--61921488 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
61921416 GAACATCTCG
61921426 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
61921446 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
61921466 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
61921486 TGT
1 TGT
61921489 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:61922761 original size:27 final size:27
Alignment explanation
Indices: 61922731--61922795 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
61922721 AGGCATATTC
61922731 GTCATTTTACCATACAGGGG-TATTACG
1 GTCATTTTACCATACAGGGGCT-TTACG
* *
61922758 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAGGGGCTTTACG
*
61922785 GTCTTTTTACC
1 GTCATTTTACC
61922796 TAATAGAGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGCTTTACG
Found at i:61922885 original size:27 final size:27
Alignment explanation
Indices: 61922864--61923205 Score: 395
Period size: 27 Copynumber: 12.7 Consensus size: 27
61922854 AAGGGTATTT
*
61922864 CAGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* *
61922891 CAGTAATTCTGTAAATCAAGGGTGAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
*
61922918 CAGTAATTCTATAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
** * *
61922945 TGGCAATTCTGTAAATCGGGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
*
61922972 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* *
61922999 C-GATAATTATGTAAATCGGGGGTAAAA
1 CAG-TAATTCTGTAAATCGAGGGTAAAA
* * *
61923026 CGGTAATTATGTAAATTG-GAGGTAAAA
1 CAGTAATTCTGTAAATCGAG-GGTAAAA
*
61923053 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* *
61923080 TAGTAATTTTGTAAA-CTGAGGGTAAAA
1 CAGTAATTCTGTAAATC-GAGGGTAAAA
*
61923107 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* **
61923134 CAGTAATTTTACAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* * *
61923161 CGGTAATTCTAT-AACCTGAGGGTAAAA
1 CAGTAATTCTGTAAATC-GAGGGTAAAA
*
61923188 CGGTAATTCTGTAAATCG
1 CAGTAATTCTGTAAATCG
61923206 GGAGTACTTT
Statistics
Matches: 272, Mismatches: 35, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.02
27 260 0.96
28 6 0.02
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (27 bp):
CAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:61926497 original size:64 final size:66
Alignment explanation
Indices: 61926423--61926573 Score: 200
Period size: 67 Copynumber: 2.3 Consensus size: 66
61926413 ATACTATGTG
* * * *
61926423 GTAGCTAGGTCACATGTGT-GATAC-GG-GATGTATACCATGTAGACAAGAGAGCTACGGGATAA
1 GTAGCTAGGTCACATGTGTGGATACGGGTGAAGAACACCATGTAGACAAGAGAGCTACGAGATAA
61926485 A
66 A
* *
61926486 TGTAGCTAGGTCACATGTGTGGTTCCGGGTGAAGAACACCATGTAGACAAGAGAGCTACGAGATA
1 -GTAGCTAGGTCACATGTGTGGATACGGGTGAAGAACACCATGTAGACAAGAGAGCTACGAGATA
61926551 AA
65 AA
* *
61926553 GTGGCTAGGTCACATGGGTGG
1 GTAGCTAGGTCACATGTGTGG
61926574 TACTAAGTGT
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
64 19 0.25
65 3 0.04
66 21 0.28
67 33 0.43
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.22
Consensus pattern (66 bp):
GTAGCTAGGTCACATGTGTGGATACGGGTGAAGAACACCATGTAGACAAGAGAGCTACGAGATAA
A
Found at i:61932662 original size:29 final size:28
Alignment explanation
Indices: 61932628--61932730 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
61932618 TACTCAATCA
*
61932628 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
61932657 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
61932686 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
61932715 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
61932731 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:61940679 original size:29 final size:28
Alignment explanation
Indices: 61940645--61940747 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
61940635 TACTCAATCA
*
61940645 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
61940674 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
61940703 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
61940732 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
61940748 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:61950766 original size:6 final size:6
Alignment explanation
Indices: 61950755--61950911 Score: 153
Period size: 6 Copynumber: 25.8 Consensus size: 6
61950745 AACCAAAATG
*
61950755 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* *
61950803 AG-GTGAC AGAATC AGAATC AAAATC AGTAA-C AGAATC AGAATC AGAATC
1 AGAAT--C AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* * * *
61950852 AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
61950901 AGAATC AGAAT
1 AGAATC AGAAT
61950912 GTGAATACAA
Statistics
Matches: 125, Mismatches: 14, Indels: 24
0.77 0.09 0.15
Matches are distributed among these distances:
5 8 0.06
6 106 0.85
7 9 0.07
8 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:61951066 original size:27 final size:26
Alignment explanation
Indices: 61951029--61951094 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
61951019 AGCATGGCTG
*
61951029 CCAGAACAGATATCGTAACAGAGTCA
1 CCAGAACAGATATCGTAACAGAGCCA
* **
61951055 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTAACAGAGCCA
61951082 CCAGAATCAGATA
1 CCAGAA-CAGATA
61951095 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTAACAGAGCCA
Found at i:61951099 original size:27 final size:27
Alignment explanation
Indices: 61951047--61951102 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
61951037 GATATCGTAA
* *
61951047 CAGAGTCACCAGATACAGATATTGTGG
1 CAGAGCCACCAGATACAGATAATGTGG
61951074 CAGAGCCACCAGA-ATCAGATAATGTGG
1 CAGAGCCACCAGATA-CAGATAATGTGG
61951101 CA
1 CA
61951103 AACCCACCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGAGCCACCAGATACAGATAATGTGG
Found at i:61951109 original size:27 final size:27
Alignment explanation
Indices: 61951053--61951110 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
61951043 GTAACAGAGT
* * *
61951053 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
61951080 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
61951107 CACC
1 CACC
61951111 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:61951637 original size:29 final size:28
Alignment explanation
Indices: 61951603--61951705 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
61951593 TACTCAATCA
*
61951603 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
61951632 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
61951661 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
61951690 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
61951706 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:61958614 original size:29 final size:28
Alignment explanation
Indices: 61958580--61958682 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
61958570 TACTCAATCA
*
61958580 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
61958609 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
61958638 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
61958667 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
61958683 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:61960463 original size:22 final size:22
Alignment explanation
Indices: 61960435--61960492 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
61960425 TAAATACGTT
61960435 TGGCACAAAGCCATAGTTAAGA
1 TGGCACAAAGCCATAGTTAAGA
* * *
61960457 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTTAAGA
*
61960479 TGGCACAGAGCCAT
1 TGGCACAAAGCCAT
61960493 TAATAATGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTTAAGA
Found at i:61960659 original size:27 final size:26
Alignment explanation
Indices: 61960580--61960661 Score: 110
Period size: 27 Copynumber: 3.1 Consensus size: 26
61960570 TCGATCGGTC
* * *
61960580 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
61960606 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
61960633 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
61960660 AA
1 AA
61960662 TGCTTCCTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:61960891 original size:27 final size:27
Alignment explanation
Indices: 61960861--61961055 Score: 257
Period size: 27 Copynumber: 7.3 Consensus size: 27
61960851 GGGGCAAAAT
* * * *
61960861 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
61960888 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61960915 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61960942 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
61960969 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61960996 -GTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61961022 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61961049 AGTAATT
1 GGTAATT
61961056 TCACAATCAA
Statistics
Matches: 146, Mismatches: 21, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
26 24 0.16
27 122 0.84
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:61961035 original size:80 final size:81
Alignment explanation
Indices: 61960863--61961055 Score: 255
Period size: 80 Copynumber: 2.4 Consensus size: 81
61960853 GGCAAAATGG
* * * * * *
61960863 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
61960928 TACAAGGGTATTTCGA
66 TACAAGGGTATTTCGA
* * *
61960944 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTC-GTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
* *
61961008 TATAGGGGTATTTCGGA
66 TACAAGGGTATTTC-GA
*
61961025 -AATTCTACCCTACAGGGGTATTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT
61961056 TCACAATCAA
Statistics
Matches: 98, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 52 0.53
81 46 0.47
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
TACAAGGGTATTTCGA
Found at i:61961080 original size:80 final size:80
Alignment explanation
Indices: 61960914--61961083 Score: 195
Period size: 80 Copynumber: 2.1 Consensus size: 80
61960904 AGGGGTATTT
* **
61960914 CGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAATTCTA
1 CGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
* ***
61960979 TCCTATAAGGGTATTT
66 -CCAATAAGGGTAAAA
* *
61960995 C-GTAATTCTACCCTATAGGGGTATTTCGGA-AATTCTACCCTACAGGGGTATTTCAGTAATT-T
1 CGGTAATTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTCAGTAATTCT
61961057 -CACAATCAAGGGTAAAA
65 AC-CAAT-AAGGGTAAAA
61961074 CGGTAATTCT
1 CGGTAATTCT
61961084 GTAAATCGAG
Statistics
Matches: 76, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
77 1 0.01
78 3 0.04
79 9 0.12
80 60 0.79
81 3 0.04
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (80 bp):
CGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTA
CCAATAAGGGTAAAA
Found at i:61961567 original size:27 final size:27
Alignment explanation
Indices: 61961060--61961550 Score: 659
Period size: 27 Copynumber: 18.2 Consensus size: 27
61961050 GTAATTTCAC
*
61961060 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
61961087 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
61961114 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** * **
61961141 AATTAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
61961168 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
61961195 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
61961222 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
61961249 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
61961276 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
61961303 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
61961330 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
61961357 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
61961384 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
61961411 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
61961438 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
***
61961465 AATCGAGGGTAAAATATTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
61961492 AA-CTAAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
61961519 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
61961546 AATCG
1 AATCG
61961551 GGAGTACTTT
Statistics
Matches: 405, Mismatches: 49, Indels: 20
0.85 0.10 0.04
Matches are distributed among these distances:
26 5 0.01
27 396 0.98
28 4 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:61963958 original size:26 final size:26
Alignment explanation
Indices: 61963929--61964016 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 26
61963919 TATTTACTTG
*
61963929 AAAATGACCGAAATACCCCACAGGGT
1 AAAATGACCGAAATACCCCATAGGGT
*
61963955 AAAATGACCGAAATGCCCCCATAGGGT
1 AAAATGACCGAAAT-ACCCCATAGGGT
* *
61963982 AAAATGA-CTATAATACCCCTGTAGGGT
1 AAAATGACCGA-AATACCCC-ATAGGGT
61964009 AAAATGAC
1 AAAATGAC
61964017 GATTTTTCCC
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
26 20 0.38
27 33 0.62
ACGTcount: A:0.41, C:0.23, G:0.19, T:0.17
Consensus pattern (26 bp):
AAAATGACCGAAATACCCCATAGGGT
Found at i:61964039 original size:27 final size:27
Alignment explanation
Indices: 61964006--61964274 Score: 172
Period size: 27 Copynumber: 10.0 Consensus size: 27
61963996 ACCCCTGTAG
61964006 GGTAAAATGACGATTTTTCCCTTATGT
1 GGTAAAATGACGATTTTTCCCTTATGT
* * *
61964033 GGCAAAATGACTATTTTTCCCTTTACGT
1 GGTAAAATGACGATTTTTCCC-TTATGT
* * *
61964061 --TAAATTGACGATTTTGCCATTATGT
1 GGTAAAATGACGATTTTTCCCTTATGT
* * * **
61964086 -GTCAAAATAACGA-TTTTGCTTTGCGT
1 GGT-AAAATGACGATTTTTCCCTTATGT
*
61964112 GATAAAATGACGATTTTGT-CCTTATGT
1 GGTAAAATGACGATTTT-TCCCTTATGT
* * ** *
61964139 GGCAAAATGACGATTTTACTTTTATGC
1 GGTAAAATGACGATTTTTCCCTTATGT
* * * *
61964166 GTTAAATTGAAGGTTTTTCCCTTATGT
1 GGTAAAATGACGATTTTTCCCTTATGT
* * *
61964193 GTTAAAATGACGATTTTGCCCTTATAT
1 GGTAAAATGACGATTTTTCCCTTATGT
** * *
61964220 AATAAAATG-CCAGTTTTGCCCTTATGT
1 GGTAAAATGACGA-TTTTTCCCTTATGT
* * * *
61964247 GGCAAAATGACTATTTTGCCCCTATGT
1 GGTAAAATGACGATTTTTCCCTTATGT
61964274 G
1 G
61964275 ATGTATGTTT
Statistics
Matches: 183, Mismatches: 50, Indels: 18
0.73 0.20 0.07
Matches are distributed among these distances:
25 5 0.03
26 34 0.19
27 136 0.74
28 8 0.04
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (27 bp):
GGTAAAATGACGATTTTTCCCTTATGT
Found at i:61964084 original size:53 final size:53
Alignment explanation
Indices: 61964008--61964263 Score: 223
Period size: 53 Copynumber: 4.8 Consensus size: 53
61963998 CCCTGTAGGG
* *
61964008 TAAAATGACGATTTTTCCCTTATGTGGCAAAATGACTATTTTTCCCTTTACGT
1 TAAAATGACGATTTTGCCCTTATGTGGCAAAATGACGATTTTTCCCTTTACGT
* * * * * *
61964061 TAAATTGACGATTTTGCCATTATGTGTCAAAATAACGA-TTTT-GCTTTGCGT
1 TAAAATGACGATTTTGCCCTTATGTGGCAAAATGACGATTTTTCCCTTTACGT
* * *
61964112 GATAAAATGACGATTTTGTCCTTATGTGGCAAAATGACGA-TTTTACTTTTATGCGT
1 --TAAAATGACGATTTTGCCCTTATGTGGCAAAATGACGATTTTTCCCTTTA--CGT
* * * * ** * ***
61964168 TAAATTGAAGGTTTTTCCCTTATGTGTTAAAATGACGATTTTGCCCTTATATAA
1 TAAAATGACGATTTTGCCCTTATGTGGCAAAATGACGATTTTTCCCTT-TACGT
* *
61964222 TAAAATG-CCAGTTTTGCCCTTATGTGGCAAAATGACTATTTT
1 TAAAATGACGA-TTTTGCCCTTATGTGGCAAAATGACGATTTT
61964264 GCCCCTATGT
Statistics
Matches: 158, Mismatches: 37, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
51 7 0.04
52 4 0.03
53 69 0.44
54 67 0.42
55 6 0.04
56 5 0.03
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (53 bp):
TAAAATGACGATTTTGCCCTTATGTGGCAAAATGACGATTTTTCCCTTTACGT
Found at i:61967642 original size:52 final size:51
Alignment explanation
Indices: 61967557--61967657 Score: 139
Period size: 52 Copynumber: 2.0 Consensus size: 51
61967547 CTACCTCAGA
* ** *
61967557 ACATGTATACATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGTC
1 ACATGCATACATCCATAATGAACTCAAACCAACTCAACGAGCTCAGATGTC
* *
61967608 ACATGCATCACATCCATGATGAACTCAAATCAACTCAACGAGCTCAGATG
1 ACATGCAT-ACATCCATAATGAACTCAAACCAACTCAACGAGCTCAGATG
61967658 CTCGCATCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 7 0.16
52 36 0.84
ACGTcount: A:0.36, C:0.28, G:0.16, T:0.21
Consensus pattern (51 bp):
ACATGCATACATCCATAATGAACTCAAACCAACTCAACGAGCTCAGATGTC
Found at i:61967668 original size:44 final size:44
Alignment explanation
Indices: 61967618--61967703 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 44
61967608 ACATGCATCA
* * *
61967618 CATCCATGATGAACTCAAATCAACTCAACGAGCTCAGATGCTCG
1 CATCCATAATGAACTCAAACCAACTCAACAAGCTCAGATGCTCG
** *
61967662 CATCCATAATGAACTTGAACCAACTCAACAAGCTCGGATGCT
1 CATCCATAATGAACTCAAACCAACTCAACAAGCTCAGATGCT
61967704 TCACATATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.21
Consensus pattern (44 bp):
CATCCATAATGAACTCAAACCAACTCAACAAGCTCAGATGCTCG
Found at i:61967737 original size:45 final size:45
Alignment explanation
Indices: 61967672--61967839 Score: 221
Period size: 45 Copynumber: 3.7 Consensus size: 45
61967662 CATCCATAAT
* *
61967672 GAACTTGAACCAACTCAACAAGCTCGGA-TGCTTCACATATATCAC
1 GAACTTGGACCAACTCAACAAGCTCGGATTTC-TCACATATATCAC
* * *
61967717 GAACTTGGACCAACTTAACAAGTTTGGATTTCTCACATATATCAC
1 GAACTTGGACCAACTCAACAAGCTCGGATTTCTCACATATATCAC
* * *
61967762 GAACTTGGACCAACTTAACAAGTTTGGATTTCTCACATATATCAC
1 GAACTTGGACCAACTCAACAAGCTCGGATTTCTCACATATATCAC
* * *
61967807 GAACTCGGACCAACTCAACGAGCTCAGATTTCT
1 GAACTTGGACCAACTCAACAAGCTCGGATTTCT
61967840 AAATTTCTAG
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
45 109 0.98
46 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (45 bp):
GAACTTGGACCAACTCAACAAGCTCGGATTTCTCACATATATCAC
Found at i:61967837 original size:90 final size:90
Alignment explanation
Indices: 61967638--61967839 Score: 228
Period size: 90 Copynumber: 2.3 Consensus size: 90
61967628 GAACTCAAAT
* * * *
61967638 CAACTCAACGAGCTCAGA-TGCTCGCATCCATAATGAACTTGAACCAACTCAACAAGCTCGGATG
1 CAACTCAACGAGCTCAGATTTCTCACATACATAACGAACTTGAACCAACTCAACAAGCTCGGATG
*
61967702 CTTCACATATATCACGAACTTGGAC
66 CTTCACATATATCACGAACTCGGAC
* * * ** * * * * * *
61967727 CAACTTAACAAGTTTGGATTTCTCACATATATCACGAACTTGGACCAACTTAACAAGTTTGGAT-
1 CAACTCAACGAGCTCAGATTTCTCACATACATAACGAACTTGAACCAACTCAACAAGCTCGGATG
*
61967791 TTCTCACATATATCACGAACTCGGAC
66 CT-TCACATATATCACGAACTCGGAC
61967817 CAACTCAACGAGCTCAGATTTCT
1 CAACTCAACGAGCTCAGATTTCT
61967840 AAATTTCTAG
Statistics
Matches: 89, Mismatches: 22, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
89 14 0.16
90 75 0.84
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (90 bp):
CAACTCAACGAGCTCAGATTTCTCACATACATAACGAACTTGAACCAACTCAACAAGCTCGGATG
CTTCACATATATCACGAACTCGGAC
Found at i:61974779 original size:40 final size:40
Alignment explanation
Indices: 61974734--61974900 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
61974724 CGGAATATAA
61974734 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
61974774 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
61974814 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
61974854 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61974893 CCGGATAT
1 CCGGATAT
61974901 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61982775 original size:40 final size:40
Alignment explanation
Indices: 61982730--61982896 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
61982720 CGGAATATAA
61982730 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
61982770 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
61982810 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
61982850 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
61982889 CCGGATAT
1 CCGGATAT
61982897 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61988832 original size:40 final size:39
Alignment explanation
Indices: 61988796--61988902 Score: 144
Period size: 39 Copynumber: 2.7 Consensus size: 39
61988786 ATATCCGGAC
*
61988796 TAAGATCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
* * *
61988836 TAAG-CCTGAAGGCATTTGTGCGAGTTACTAAACCCGGGT
1 TAAGTCC-GAAGGCATTCGTGCGAGTTAATAAATCCGGGT
61988875 TAAGTCCCGAAGGCATTCGTGCGAGTTA
1 TAAGT-CCGAAGGCATTCGTGCGAGTTA
61988903 CTATAACCGG
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.03
39 32 0.54
40 23 0.39
41 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
Found at i:61988903 original size:40 final size:40
Alignment explanation
Indices: 61988802--61988931 Score: 174
Period size: 40 Copynumber: 3.3 Consensus size: 40
61988792 GGACTAAGAT
* * *
61988802 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* *
61988841 CTGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* *
61988881 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTC
61988921 CCGAAGGCATT
1 CCGAAGGCATT
61988932 TGAGTGAGTC
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 33 0.41
40 38 0.47
41 9 0.11
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:61995586 original size:40 final size:40
Alignment explanation
Indices: 61995514--61995680 Score: 232
Period size: 40 Copynumber: 4.2 Consensus size: 40
61995504 TCTTCAGGAT
*
61995514 TTAG-CCGGATATAACAACT-GCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
61995552 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
* * * *
61995592 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTC
* *
61995632 ATAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
*
61995672 TTAGTCCGG
1 TTAGCCCGG
61995681 TTATCATCCG
Statistics
Matches: 112, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
38 4 0.04
39 16 0.14
40 90 0.80
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
Found at i:61995650 original size:80 final size:78
Alignment explanation
Indices: 61995505--61995680 Score: 257
Period size: 80 Copynumber: 2.2 Consensus size: 78
61995495 ACCCAAGTAT
* *
61995505 CTTCAGGAT-TTAGCCGGATATAACAACTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCA
1 CTTC-GGATCTTAGCCGGATATAACAACTGCACAAATGCCTTCGGGACATAGCCCGGATATAGCA
61995569 ACTCGCACAAATGC
65 ACTCGCACAAATGC
* *
61995583 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAG
1 CTTCGGATCTTAG-CCGGATATAA-CAACT-GCACAAATGCCTTCGGGACATAGCCCGGATATAG
61995647 CAACTCGCACAAATGC
63 CAACTCGCACAAATGC
61995663 CTTCGGATCTTAGTCCGG
1 CTTCGGATCTTAG-CCGG
61995681 TTATCATCCG
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
77 3 0.03
78 8 0.09
79 13 0.15
80 64 0.73
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (78 bp):
CTTCGGATCTTAGCCGGATATAACAACTGCACAAATGCCTTCGGGACATAGCCCGGATATAGCAA
CTCGCACAAATGC
Found at i:61996227 original size:2 final size:2
Alignment explanation
Indices: 61996220--61996249 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
61996210 TTAAAGTGCC
61996220 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61996250 CTACATAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62002049 original size:2 final size:2
Alignment explanation
Indices: 62002042--62002071 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
62002032 ACCAGAACAG
62002042 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62002072 GTGGCGAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62002152 original size:27 final size:26
Alignment explanation
Indices: 62002104--62002155 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
62002094 GTGAGGCTGC
*
62002104 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
62002130 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
62002156 TTGCAGTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:62004537 original size:27 final size:26
Alignment explanation
Indices: 62004475--62004646 Score: 175
Period size: 27 Copynumber: 6.4 Consensus size: 26
62004465 GGGGAAAAAT
* * *
62004475 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
*
62004502 -GTAATTCTACCCTGCAGGGCTATTTC
1 GGTAATTCTACCCTACAGGG-TATTTC
*
62004528 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
* *
62004555 GGTAATTCTATCCTACGGGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
* *
62004582 GGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTA-CAGGGTATTTC
**
62004609 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
*
62004636 GATAATTCTAC
1 GGTAATTCTAC
62004647 AACTTATCCA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
25 4 0.03
26 18 0.15
27 95 0.79
28 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (26 bp):
GGTAATTCTACCCTACAGGGTATTTC
Found at i:62004581 original size:54 final size:53
Alignment explanation
Indices: 62004475--62004646 Score: 218
Period size: 54 Copynumber: 3.2 Consensus size: 53
62004465 GGGGAAAAAT
* * * * *
62004475 GGTAATTTTACCCCACAAGGGTATCTCGTAATTCTACCCTGCAGGGCTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGTAATTCTACCCTACAGGGGTATTTC
* * *
62004528 GGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC-GTAATTCTACCCTACAGGGGTATTTC
* **
62004582 GGTAATTCTACCCTATAAGGGTATTTTAATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTA-TTTCGTAATTCTACCCTACAGGGGTATTTC
*
62004636 GATAATTCTAC
1 GGTAATTCTAC
62004647 AACTTATCCA
Statistics
Matches: 102, Mismatches: 15, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 23 0.23
54 76 0.75
55 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (53 bp):
GGTAATTCTACCCTACAAGGGTATTTCGTAATTCTACCCTACAGGGGTATTTC
Found at i:62004595 original size:81 final size:80
Alignment explanation
Indices: 62004493--62004645 Score: 200
Period size: 81 Copynumber: 1.9 Consensus size: 80
62004483 TACCCCACAA
* ** * *
62004493 GGGTATCTCGTAATTCTACCCT-GCAGGGCTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
1 GGGTATCTCGTAATTCTACCCTAGAAGGG-TATTTCAATAATTCTACCCTACAAGGGTATTTCGA
62004557 TAATTCTATCCTACGG
65 TAATTCTATCCTACGG
* * * *
62004573 GGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTAATAATTCTACCCTACAGGGGTATTTCGA
1 GGGTATCTC-GTAATTCTACCCTAGAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGA
62004638 TAATTCTA
65 TAATTCTA
62004646 CAACTTATCC
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
80 8 0.13
81 50 0.81
82 4 0.06
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (80 bp):
GGGTATCTCGTAATTCTACCCTAGAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTCGAT
AATTCTATCCTACGG
Found at i:62007387 original size:42 final size:43
Alignment explanation
Indices: 62007341--62007424 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
62007331 TGTAAAACTA
* * *
62007341 TGTCTGGGACATTAGCATCG-TATTTGATTTCGTGTAAGACCC
1 TGTCTGGGACAGTAGCATCGATATTTGATTACATGTAAGACCC
*
62007383 TGTCTGGGACAGTGGCATCGATATTTGATTACATGTAAGACC
1 TGTCTGGGACAGTAGCATCGATATTTGATTACATGTAAGACC
62007425 ACGTATGCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 18 0.49
43 19 0.51
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTCTGGGACAGTAGCATCGATATTTGATTACATGTAAGACCC
Found at i:62010614 original size:6 final size:6
Alignment explanation
Indices: 62010596--62010655 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
62010586 AAGAAACATT
*
62010596 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
*
62010645 ATCAAA ATCAG
1 ATCAGA ATCAG
62010656 TATTAGGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 2 0.04
6 38 0.84
7 4 0.09
8 1 0.02
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:62010643 original size:31 final size:31
Alignment explanation
Indices: 62010605--62010683 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
62010595 TATCAGAACT
*
62010605 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
62010636 AGAATCAGAATCAAAATCAGTATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
62010667 AGAATCAAAAGCAGAAT
1 AGAATCAGAATCAGAAT
62010684 GTGATTGCAA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:62010894 original size:67 final size:67
Alignment explanation
Indices: 62010786--62010939 Score: 254
Period size: 67 Copynumber: 2.3 Consensus size: 67
62010776 CACCACAGAA
* *
62010786 ATTGCAGCGAGGTTGCCATATATTGTGACGAAGTCACCAGAACAGATATAAGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATAAGTGGCGAAGCCACC
62010851 AG
66 AG
* * *
62010853 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGTGAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATAAGTGGCGAAGCCACC
62010918 AG
66 AG
*
62010920 ATTGTAGCGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
62010940 ACGCTTCCTC
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 81 1.00
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATAAGTGGCGAAGCCACC
AG
Found at i:62011196 original size:27 final size:27
Alignment explanation
Indices: 62011165--62011497 Score: 347
Period size: 27 Copynumber: 12.3 Consensus size: 27
62011155 GGGGTAAAAT
* *
62011165 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
62011192 AGTAATTCTACCCTAC-AGCGGTATTTC
1 GGTAATTTTACCCTACAAG-GGTATTTC
* *
62011219 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
62011246 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
62011273 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * * *
62011300 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
*
62011327 GGT-ATTTCTACCCTACAGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
62011354 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
62011381 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
62011408 GGT-ATTTCTACCCTACAGGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
62011435 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
62011462 AGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
62011489 GGTAATTTT
1 GGTAATTTT
62011498 GTAAATCGAG
Statistics
Matches: 268, Mismatches: 30, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
26 11 0.04
27 245 0.91
28 12 0.04
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:62011509 original size:27 final size:27
Alignment explanation
Indices: 62011488--62011590 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
62011478 AAGGGTATTT
62011488 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAA
*
62011515 CGGTAATTTTGTAAATCGAGGGTGAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAA
* * * *
62011542 TGGTAATTCTATAAATCGAGGATAAAA
1 CGGTAATTTTGTAAATCGAGGGTAAAA
* * **
62011569 TGGTAATTCTACAAATCGAGGG
1 CGGTAATTTTGTAAATCGAGGG
62011591 CATTTCAGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (27 bp):
CGGTAATTTTGTAAATCGAGGGTAAAA
Done.