Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 209 of 335
Found at i:62386383 original size:3 final size:3
Alignment explanation
Indices: 62386377--62386412 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
62386367 TTATTTTATT
62386377 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA AT
62386413 GAGGATATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:62388764 original size:21 final size:21
Alignment explanation
Indices: 62388725--62388765 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
62388715 ATTTTTACTA
62388725 TTTTAAATATAAAATATTTAT
1 TTTTAAATATAAAATATTTAT
*
62388746 TTTTATATCATAAAA-ATTTA
1 TTTTAAAT-ATAAAATATTTA
62388766 AATCAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
TTTTAAATATAAAATATTTAT
Found at i:62391567 original size:33 final size:33
Alignment explanation
Indices: 62391530--62391595 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
62391520 TTGAGAAGGG
62391530 GTCGGGACTAAACCGATCACATATAAAAATTTT
1 GTCGGGACTAAACCGATCACATATAAAAATTTT
62391563 GTCGGGACTAAACCGATCACATATAAAAATTTT
1 GTCGGGACTAAACCGATCACATATAAAAATTTT
62391596 CAAACACTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.27
Consensus pattern (33 bp):
GTCGGGACTAAACCGATCACATATAAAAATTTT
Found at i:62401568 original size:46 final size:47
Alignment explanation
Indices: 62401462--62401583 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
62401452 TGTCTTCGAC
** * *
62401462 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
62401512 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
62401558 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
62401584 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:62404070 original size:16 final size:17
Alignment explanation
Indices: 62404040--62404076 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
62404030 CTCTCTTTTG
*
62404040 TTTTCTTTTTCTTATTT
1 TTTTCTTCTTCTTATTT
62404057 TTTTCTTCTT-TTATTT
1 TTTTCTTCTTCTTATTT
62404073 TTTT
1 TTTT
62404077 ACAATCTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTCTTCTTCTTATTT
Found at i:62405634 original size:21 final size:21
Alignment explanation
Indices: 62405610--62405649 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62405600 TCTAGGTTGA
* *
62405610 ACTACTTGAGGAGGTCTTTTG
1 ACTACTTCAAGAGGTCTTTTG
62405631 ACTACTTCAAGAGGTCTTT
1 ACTACTTCAAGAGGTCTTT
62405650 CACGTTGCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.38
Consensus pattern (21 bp):
ACTACTTCAAGAGGTCTTTTG
Found at i:62406229 original size:11 final size:11
Alignment explanation
Indices: 62406213--62406255 Score: 63
Period size: 10 Copynumber: 4.0 Consensus size: 11
62406203 AAAAATTTCC
62406213 GAATTTTTTTT
1 GAATTTTTTTT
62406224 GAA-TTTTTTT
1 GAATTTTTTTT
62406234 G-ATTTTTTTT
1 GAATTTTTTTT
62406244 GAATTGTTTTTT
1 GAATT-TTTTTT
62406256 TTTTTTACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 1 0.03
10 16 0.55
11 6 0.21
12 6 0.21
ACGTcount: A:0.16, C:0.00, G:0.12, T:0.72
Consensus pattern (11 bp):
GAATTTTTTTT
Found at i:62406240 original size:20 final size:21
Alignment explanation
Indices: 62406215--62406261 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
62406205 AAATTTCCGA
62406215 ATTTTTTTTGAATT-TTTTTG
1 ATTTTTTTTGAATTGTTTTTG
62406235 ATTTTTTTTGAATTGTTTTT-
1 ATTTTTTTTGAATTGTTTTTG
62406255 -TTTTTTT
1 ATTTTTTT
62406262 ACTTACAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.27
20 14 0.54
21 5 0.19
ACGTcount: A:0.13, C:0.00, G:0.09, T:0.79
Consensus pattern (21 bp):
ATTTTTTTTGAATTGTTTTTG
Found at i:62410506 original size:40 final size:40
Alignment explanation
Indices: 62410282--62410484 Score: 334
Period size: 40 Copynumber: 5.1 Consensus size: 40
62410272 CAATTGAGGA
* *
62410282 TTATATCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
62410322 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
62410362 TTATTCCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
62410402 CTATTTCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * *
62410442 CTATTTCCGGGTTAAGACCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
62410482 TTA
1 TTA
62410485 CATCCGGGCT
Statistics
Matches: 153, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 153 1.00
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:62413857 original size:43 final size:43
Alignment explanation
Indices: 62413810--62413925 Score: 164
Period size: 43 Copynumber: 2.7 Consensus size: 43
62413800 ATCACATACC
*
62413810 GATGCCAATATCCCAG-CTATGGTCTTACACGAAATCA-ACTAAT
1 GATGCCAATGTCCCAGAC-ATGGTCTTACACGAAATCATA-TAAT
* *
62413853 GATGCCAATGTCCTAGACATGGTCTTACACGTAATCATATAAT
1 GATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATAAT
*
62413896 GATTCCAATGTCCCAGACATGGTCTTACAC
1 GATGCCAATGTCCCAGACATGGTCTTACAC
62413926 ATAATCACAT
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
43 64 0.97
44 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
GATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATAAT
Found at i:62419887 original size:40 final size:39
Alignment explanation
Indices: 62419843--62420024 Score: 204
Period size: 39 Copynumber: 4.6 Consensus size: 39
62419833 GTTCAAAACA
* ** * *
62419843 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGTTATCATAACTCGCACAATTG
* *
62419883 CCTTCGGGACTTAACCC-GTATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGT-TATCATAACTCGCACAATTG
* *
62419923 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGTTATCATAACTCGCACAATTG
* * * *
62419962 CCTTCGGGCTTAGCCCGGATATCACAATTGGCACAATTG
1 CCTTCGGGCTTAGCCCGGTTATCATAACTCGCACAATTG
*
62420001 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGTTATCA
62420025 CTCGAACATT
Statistics
Matches: 125, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
39 86 0.69
40 39 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGTTATCATAACTCGCACAATTG
Found at i:62419956 original size:39 final size:39
Alignment explanation
Indices: 62419873--62420025 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
62419863 TATGGTAACC
* * *
62419873 CGCACAAATGCCTTCGGGACTTAACCCGTATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
62419913 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
62419952 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
62419991 GGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
62420026 TCGAACATTC
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:62421830 original size:22 final size:22
Alignment explanation
Indices: 62421802--62421871 Score: 97
Period size: 22 Copynumber: 3.2 Consensus size: 22
62421792 AGGAGGAAGA
62421802 TATGTGGCAGTTTATCTGCAAT
1 TATGTGGCAGTTTATCTGCAAT
*
62421824 TATGTGGTAGTTTATCTGCAAT
1 TATGTGGCAGTTTATCTGCAAT
* *
62421846 TATGTGACCGTTTATC-GACAAT
1 TATGTGGCAGTTTATCTG-CAAT
62421868 TATG
1 TATG
62421872 AGGTGGCTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
21 1 0.02
22 42 0.98
ACGTcount: A:0.24, C:0.13, G:0.21, T:0.41
Consensus pattern (22 bp):
TATGTGGCAGTTTATCTGCAAT
Found at i:62432048 original size:40 final size:40
Alignment explanation
Indices: 62432011--62432196 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
62432001 GCTACTCGTT
*
62432011 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
62432051 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
62432091 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
62432131 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
62432172 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62432197 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:62434486 original size:40 final size:40
Alignment explanation
Indices: 62434449--62434634 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
62434439 GCTACTCGTT
*
62434449 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
62434489 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
62434529 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
62434569 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
62434610 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62434635 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:62436916 original size:40 final size:40
Alignment explanation
Indices: 62436879--62437064 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
62436869 GCTACTCGTT
*
62436879 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
62436919 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
62436959 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
62436999 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
62437040 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62437065 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:62436993 original size:80 final size:82
Alignment explanation
Indices: 62436847--62437064 Score: 240
Period size: 80 Copynumber: 2.7 Consensus size: 82
62436837 GAATCACGTA
* ** *
62436847 CCTTCGGAT-TTAA-CCGGATATAGCT-AC-TCGTTCAAATGCCTTCGGGACATAGCCCGG-TTA
1 CCTTCGGATCTTAACCCGGATATAG-TAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATTA
62436907 TAGTAACTCGCACAAATG
65 TAGTAACTCGCACAAATG
* * *
62436925 CCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGATT
1 CCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATT
*
62436987 -TAGTAACTCGCACGAATG
64 ATAGTAACTCGCACAAATG
** *
62437005 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGA
62437065 CATCATTCGA
Statistics
Matches: 119, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
78 5 0.04
79 14 0.12
80 87 0.73
81 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (82 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATTAT
AGTAACTCGCACAAATG
Found at i:62444343 original size:40 final size:40
Alignment explanation
Indices: 62444306--62444491 Score: 245
Period size: 40 Copynumber: 4.7 Consensus size: 40
62444296 GCTACTCGTT
*
62444306 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
62444346 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
62444386 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
62444426 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
62444467 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62444492 CATCATTCGA
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 3 0.02
40 118 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:62444420 original size:80 final size:82
Alignment explanation
Indices: 62444274--62444491 Score: 249
Period size: 80 Copynumber: 2.7 Consensus size: 82
62444264 GAATCACGTA
* ** *
62444274 CCTTCGGAT-TTAA-CCGGATATAGCT-AC-TCGTTCAAATGCCTTCGGGACATAGCCCGG-TTA
1 CCTTCGGATCTTAACCCGGATATAG-TAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATTA
62444334 TAGTAACTCGCACAAATG
65 TAGTAACTCGCACAAATG
* * *
62444352 CCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGATT
1 CCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATT
62444414 -TAGTAACTCGCACAAATG
64 ATAGTAACTCGCACAAATG
** *
62444432 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGA
62444492 CATCATTCGA
Statistics
Matches: 120, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
78 5 0.04
79 14 0.12
80 88 0.73
81 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (82 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAATGCCTTCGGGACTTAGCCCGGATTAT
AGTAACTCGCACAAATG
Found at i:62449233 original size:46 final size:46
Alignment explanation
Indices: 62449177--62449352 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 46
62449167 TATTTGGGCA
* *
62449177 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *** * ** ** *
62449223 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTAAACG
* * *
62449270 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
62449316 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62449353 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 27, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
46 69 0.68
47 33 0.32
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:62449332 original size:93 final size:93
Alignment explanation
Indices: 62449173--62449345 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
62449163 AGGATATTTG
* * * *
62449173 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
62449238 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* ** *
62449266 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
62449331 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
62449346 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:62454833 original size:14 final size:15
Alignment explanation
Indices: 62454784--62454833 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
62454774 GTATCTTGGG
*
62454784 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
62454799 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
62454814 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
62454828 TTTCTT
1 TTTCTT
62454834 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:62462140 original size:47 final size:47
Alignment explanation
Indices: 62462087--62462305 Score: 357
Period size: 47 Copynumber: 4.7 Consensus size: 47
62462077 GATTTTACGC
62462087 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
62462134 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
62462181 GATGAATGTGAAGGTGTATATATGTGACAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
62462228 GATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
62462275 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
62462306 TCCCGAAGGG
Statistics
Matches: 158, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 158 1.00
ACGTcount: A:0.33, C:0.08, G:0.32, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:62467668 original size:47 final size:47
Alignment explanation
Indices: 62467607--62467736 Score: 188
Period size: 47 Copynumber: 2.8 Consensus size: 47
62467597 GTACGAATAA
* * * *
62467607 TACCTTGATATGGCTACAGGCCATGGTATAGGTATTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGT
* * * *
62467654 TACCTTGATTTGGCTACGGGCCATGGCATAGGTACTCTGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGT
62467701 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
62467737 TATCGATTGT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCAGAGAGAAGT
Found at i:62469520 original size:30 final size:31
Alignment explanation
Indices: 62469453--62469557 Score: 106
Period size: 32 Copynumber: 3.4 Consensus size: 31
62469443 AACAGAATGG
* * * *
62469453 CACAAAGCCATCAGTAGCTATAGTATGA-CTGG
1 CACAGAGCCATCAGTA-CGATAATATGATC-GA
62469485 CACAGAGCCATCAGT-CGATAATATGATCGA
1 CACAGAGCCATCAGTACGATAATATGATCGA
* * *
62469515 TACAGAGCCATCAGTAACGGTAATATGATCGG
1 CACAGAGCCATCAGT-ACGATAATATGATCGA
62469547 CACAGAGCCAT
1 CACAGAGCCAT
62469558 GATCAAGATG
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
30 24 0.39
31 1 0.02
32 37 0.60
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (31 bp):
CACAGAGCCATCAGTACGATAATATGATCGA
Found at i:62469629 original size:22 final size:22
Alignment explanation
Indices: 62469545--62469630 Score: 93
Period size: 22 Copynumber: 3.9 Consensus size: 22
62469535 TAATATGATC
*
62469545 GGCACAGAGCCATGATCA-AGAT
1 GGCACAGAGCCATAATCAGA-AT
* ** *
62469567 GGCACGGAGCCATAATTGGGAT
1 GGCACAGAGCCATAATCAGAAT
**
62469589 GGCACAGAGCCATCTTCAGAAT
1 GGCACAGAGCCATAATCAGAAT
62469611 GGCACAGAGCCATAATCAGA
1 GGCACAGAGCCATAATCAGA
62469631 TCAAGTGGCT
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.34, C:0.23, G:0.28, T:0.15
Consensus pattern (22 bp):
GGCACAGAGCCATAATCAGAAT
Found at i:62469704 original size:43 final size:43
Alignment explanation
Indices: 62469656--62469738 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
62469646 CCATCGGTAG
*
62469656 GTCCACAGTCGTCTCGCT-CGACCCGTGCGACCTTAACAGAATA
1 GTCCACAGTCGTCTCG-TGCGACCCGTGCAACCTTAACAGAATA
* *
62469699 GTCCACAGTTGTCTCGTGCGACCTGTGCAACCTTAACAGA
1 GTCCACAGTCGTCTCGTGCGACCCGTGCAACCTTAACAGA
62469739 TCAATACTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.23, C:0.33, G:0.22, T:0.23
Consensus pattern (43 bp):
GTCCACAGTCGTCTCGTGCGACCCGTGCAACCTTAACAGAATA
Found at i:62470106 original size:27 final size:27
Alignment explanation
Indices: 62470027--62470111 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
62470017 TACCTGACTA
* * *
62470027 GGGTATTTCGGTAATTTTACAAACAGG
1 GGGTATTTCAGTAATCTTACAAACTGG
62470054 GGGTATTTCAGTAATCTTACAAACTGG
1 GGGTATTTCAGTAATCTTACAAACTGG
* *
62470081 GGGTATTTCAGTAATCTTACATACTGA
1 GGGTATTTCAGTAATCTTACAAACTGG
62470108 GGGT
1 GGGT
62470112 CTTAATGACC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (27 bp):
GGGTATTTCAGTAATCTTACAAACTGG
Found at i:62473083 original size:29 final size:29
Alignment explanation
Indices: 62472948--62473082 Score: 216
Period size: 29 Copynumber: 4.7 Consensus size: 29
62472938 GCTTGGAAGG
62472948 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
62472977 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
62473006 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
62473035 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
62473064 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
62473083 GATCGTTTAT
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:62476353 original size:26 final size:26
Alignment explanation
Indices: 62476324--62476377 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
62476314 TGGCAATAAT
* *
62476324 AGTAACATAGCAGGGCTACCAGTAAC
1 AGTAACAAAGCAAGGCTACCAGTAAC
* * *
62476350 AGTATCAAAGCAAGGCTGCTAGTAAC
1 AGTAACAAAGCAAGGCTACCAGTAAC
62476376 AG
1 AG
62476378 AATGGCTAAG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (26 bp):
AGTAACAAAGCAAGGCTACCAGTAAC
Found at i:62476464 original size:32 final size:31
Alignment explanation
Indices: 62476428--62476530 Score: 86
Period size: 32 Copynumber: 3.3 Consensus size: 31
62476418 ATAGGATGGT
62476428 ACAAAGCCATTAGTAGCTATAGTATGATCGGC
1 ACAAAGCCATTAGTAGCTATA-TATGATCGGC
* * * * **
62476460 ACAAAGCCATCAATCGGTA-ATATGATCGAT
1 ACAAAGCCATTAGTAGCTATATATGATCGGC
*
62476490 ACAAAGCCATTAGTAACGGTA-ATAT-ATCGGC
1 ACAAAGCCATTAGT-A-GCTATATATGATCGGC
*
62476521 ACAGAGCCAT
1 ACAAAGCCAT
62476531 GGTCAAGATG
Statistics
Matches: 57, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
30 20 0.35
31 14 0.25
32 23 0.40
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.22
Consensus pattern (31 bp):
ACAAAGCCATTAGTAGCTATATATGATCGGC
Found at i:62476486 original size:30 final size:31
Alignment explanation
Indices: 62476450--62476530 Score: 94
Period size: 30 Copynumber: 2.6 Consensus size: 31
62476440 GTAGCTATAG
*
62476450 TATGATCGGCACAAAGCCATCA-ATCGGTAA
1 TATGATCGGCACAAAGCCATCAGAACGGTAA
** *
62476480 TATGATCGATACAAAGCCATTAGTAACGGTAA
1 TATGATCGGCACAAAGCCATCAG-AACGGTAA
*
62476512 TAT-ATCGGCACAGAGCCAT
1 TATGATCGGCACAAAGCCAT
62476531 GGTCAAGATG
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
30 19 0.45
31 13 0.31
32 10 0.24
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (31 bp):
TATGATCGGCACAAAGCCATCAGAACGGTAA
Found at i:62476602 original size:22 final size:22
Alignment explanation
Indices: 62476518--62476603 Score: 75
Period size: 22 Copynumber: 3.9 Consensus size: 22
62476508 GTAATATATC
**
62476518 GGCACAGAGCCATGGTCA-AGAT
1 GGCACAGAGCCATAATCAGA-AT
** * * *
62476540 GGCATGGAGCCATTATCGGGAT
1 GGCACAGAGCCATAATCAGAAT
**
62476562 GGCACAGAGCCATCTTCAGAAT
1 GGCACAGAGCCATAATCAGAAT
62476584 GGCACAGAGCCATAATCAGA
1 GGCACAGAGCCATAATCAGA
62476604 TCAAGTGGCT
Statistics
Matches: 49, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
22 49 1.00
ACGTcount: A:0.31, C:0.23, G:0.29, T:0.16
Consensus pattern (22 bp):
GGCACAGAGCCATAATCAGAAT
Found at i:62476680 original size:43 final size:44
Alignment explanation
Indices: 62476632--62476750 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 44
62476622 TTGGTAGGTG
*
62476632 CACAGTCGTCTTGC-T-CGACCCGTGCGACCTTAATAGAATAGTC
1 CACAGTCGTCTT-CATGCGACCCGTGCAACCTTAATAGAATAGTC
*
62476675 CACAGTCGTC-TCATGCGACTCGTGCAACCTTAATAGAATAGTC
1 CACAGTCGTCTTCATGCGACCCGTGCAACCTTAATAGAATAGTC
* * * * *
62476718 CACAGTTGTC-TCGTGTGATCTGTGCAACCTTAA
1 CACAGTCGTCTTCATGCGACCCGTGCAACCTTAA
62476751 CAGATCAATA
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
41 1 0.02
42 2 0.03
43 63 0.95
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (44 bp):
CACAGTCGTCTTCATGCGACCCGTGCAACCTTAATAGAATAGTC
Found at i:62490584 original size:29 final size:29
Alignment explanation
Indices: 62490542--62490601 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
62490532 CTGAGTCAAA
62490542 AAAATATTTTAATTATTTTCTATGTTTAT
1 AAAATATTTTAATTATTTTCTATGTTTAT
62490571 AAAATATTTTAATTATTTTCTATGTTTAT
1 AAAATATTTTAATTATTTTCTATGTTTAT
62490600 AA
1 AA
62490602 TATGTGAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (29 bp):
AAAATATTTTAATTATTTTCTATGTTTAT
Found at i:62490611 original size:27 final size:28
Alignment explanation
Indices: 62490543--62490611 Score: 86
Period size: 29 Copynumber: 2.5 Consensus size: 28
62490533 TGAGTCAAAA
* *
62490543 AAATATTTTAATTATTTTCTATGTTTAT
1 AAATATGTGAATTATTTTCTATGTTTAT
* *
62490571 AAAATATTTTAATTATTTTCTATGTTTAT
1 -AAATATGTGAATTATTTTCTATGTTTAT
62490600 -AATATGTGAATT
1 AAATATGTGAATT
62490612 GATATCTGTG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 10 0.26
29 28 0.74
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.57
Consensus pattern (28 bp):
AAATATGTGAATTATTTTCTATGTTTAT
Found at i:62497240 original size:27 final size:27
Alignment explanation
Indices: 62497209--62497548 Score: 301
Period size: 27 Copynumber: 12.6 Consensus size: 27
62497199 TTAGTTTACC
** * *
62497209 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
62497236 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** *
62497263 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* ** *** **
62497290 GAATTATTATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* **
62497317 AAATTACTAAAATACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
**
62497344 AAATTACCAAAATACCCTCGATCAGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
62497371 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
62497397 AAATTGCTAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
62497424 AAATTA-CAGAAATACCCTCAATTTGTA
1 AAATTACCA-AAATACCCTCGATTTGTA
*
62497451 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
62497478 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACCAAAATACC-CTCGATTTGTA
* *
62497505 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
62497532 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
62497549 CTGATATACA
Statistics
Matches: 261, Mismatches: 45, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
26 26 0.10
27 232 0.89
28 3 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:62497571 original size:54 final size:54
Alignment explanation
Indices: 62497302--62497576 Score: 144
Period size: 54 Copynumber: 5.1 Consensus size: 54
62497292 ATTATTATTT
* ** * *
62497302 TACCCTCGATTTACAAAATTACTAAAATACC-CTCGAT-TTACAAAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCACT-GATATGAC-AAATTA-CAGAAA
* ** * *
62497356 TACCCTCGATCAGTAAAATTACCAAAATACC-CT-AGTTTGTA-AAATTGCTA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCACTGA-TATG-ACAAATTAC-AGAAA
*** * *
62497409 TACCCTTGGTTTGTAAAATTA-CAGAAATACC-CTCAATTTGTA-AAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCA-AAATACCACT-GATATG-ACAAATTA-CAGAAA
* * * ** *
62497463 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCACTGATATGACAAATTACAGAAA
* *
62497517 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATAT-ACAATGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCACTGATATGACAA-ATTACAGAAA
62497571 TACCCT
1 TACCCT
62497577 TTACTTTCTA
Statistics
Matches: 180, Mismatches: 26, Indels: 30
0.76 0.11 0.13
Matches are distributed among these distances:
52 4 0.02
53 39 0.22
54 129 0.72
55 8 0.04
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCACTGATATGACAAATTACAGAAA
Found at i:62497783 original size:27 final size:27
Alignment explanation
Indices: 62497692--62497783 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
62497682 ACGTCTATTA
*
62497692 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
62497719 GGTAAAGA-GACCGTAAAGCCCCTGTAG
1 GGTAAA-ATGACCGTAAAGCCCCTGTAG
* * *
62497746 GGTAAAGTGACCGCAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
62497773 GGTAAAATGAC
1 GGTAAAATGAC
62497784 GAATATGCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 56 0.97
28 2 0.03
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:62498614 original size:26 final size:26
Alignment explanation
Indices: 62498582--62498706 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
62498572 GAGGAAGTGC
* **
62498582 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
62498608 AAGAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
62498634 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
62498660 AAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
62498686 AAAAGGGCTTATGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
62498707 ATTAAAAGAG
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 86 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:62498660 original size:52 final size:52
Alignment explanation
Indices: 62498582--62498719 Score: 217
Period size: 52 Copynumber: 2.7 Consensus size: 52
62498572 GAGGAAGTGC
* * *
62498582 AAAAGGGCTTATGCCCCAATTTATTGAAGAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAAGGCTTATGCCCCAGTTTACCG
*
62498634 AAAAGGGCTTATGCCCTAGTTTATTGAAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAAGGCTTATGCCCCAGTTTACCG
62498686 AAAAGGGCTTATGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAA-AGGCT
62498720 AGGCCTCTAG
Statistics
Matches: 80, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
50 4 0.05
51 10 0.12
52 66 0.82
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAAGGCTTATGCCCCAGTTTACCG
Found at i:62498960 original size:31 final size:31
Alignment explanation
Indices: 62498925--62499005 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
62498915 CGTTTACAGT
62498925 AAAGGCTTCGGCCCAATAATATGATTTATGA
1 AAAGGCTTCGGCCCAATAATATGATTTATGA
* *
62498956 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATAATATGATTTATGA
*
62498987 AAAGGCTTCAGCCCAATAA
1 AAAGGCTTCGGCCCAATAA
62499006 CCGTTAAATG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGATTTATGA
Found at i:62500710 original size:90 final size:90
Alignment explanation
Indices: 62500548--62500712 Score: 197
Period size: 90 Copynumber: 1.8 Consensus size: 90
62500538 TGGTGTTGAT
* * * * * * * *
62500548 ATGAGATTTCATGTAAGACTATGTCTGGGACATGGCACCGATATGAGGTCTCGTGTAAGACCATG
1 ATGAGACTTCATATAAGACCATATCTGGGACATGGCACCAATATGAGGCCTCATGTAAGACCATA
**
62500613 TCTGGGACATTGCATCGGCACCGAC
66 TAGGGGACATTGCATCGGCACCGAC
* * *
62500638 ATGAGACTTCATATAAGACCATATCTGGGATATGGCATCAATATGTAGGCCT-ATGTACGACCAT
1 ATGAGACTTCATATAAGACCATATCTGGGACATGGCACCAATATG-AGGCCTCATGTAAGACCAT
62500702 ATAGGGGACAT
65 ATAGGGGACAT
62500713 GGCTTTGGCA
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
90 56 0.92
91 5 0.08
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (90 bp):
ATGAGACTTCATATAAGACCATATCTGGGACATGGCACCAATATGAGGCCTCATGTAAGACCATA
TAGGGGACATTGCATCGGCACCGAC
Found at i:62516517 original size:44 final size:45
Alignment explanation
Indices: 62516432--62516534 Score: 122
Period size: 44 Copynumber: 2.3 Consensus size: 45
62516422 CGGTTATGTG
* * *
62516432 TGGCACTAAGTGTGCGATATCGAGATAACTTTGGTTTAACA-TGA
1 TGGCACTAAGTGTGCGATATCGAGATAACTTCGGCTAAACATTGA
* * *
62516476 TGGCACTAAGTGTGCGATATCGTTG-TAGCTTCGGCTAAACATTTA
1 TGGCACTAAGTGTGCGATATCG-AGATAACTTCGGCTAAACATTGA
62516521 T-GCACTAAGTGTGC
1 TGGCACTAAGTGTGC
62516535 AAGTTCTTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
44 47 0.92
45 4 0.08
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (45 bp):
TGGCACTAAGTGTGCGATATCGAGATAACTTCGGCTAAACATTGA
Found at i:62525463 original size:9 final size:9
Alignment explanation
Indices: 62525449--62525473 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
62525439 TAAATTCAAG
62525449 CTAAATTGA
1 CTAAATTGA
62525458 CTAAATTGA
1 CTAAATTGA
62525467 CTAAATT
1 CTAAATT
62525474 AACCATTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.36
Consensus pattern (9 bp):
CTAAATTGA
Found at i:62541313 original size:40 final size:40
Alignment explanation
Indices: 62541225--62541315 Score: 121
Period size: 40 Copynumber: 2.3 Consensus size: 40
62541215 TATGCTGGAA
* *
62541225 ATTATATCCGGGTTAAGACCCGAAGGCATTCGTGCGAGTT
1 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTG
* * *
62541265 ATTCTATCCGGGCTAAGACCCGAAGGTATTTGTGC-ATGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTG
62541305 ATTATATCCGG
1 ATTATATCCGG
62541316 TTATATTCCG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
39 1 0.02
40 43 0.98
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTG
Found at i:62549188 original size:40 final size:40
Alignment explanation
Indices: 62549122--62549288 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
62549112 AAATTGAATG
* * *
62549122 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
62549161 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
62549201 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
62549241 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
62549281 ATATCCGG
1 ATATCCGG
62549289 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:62558273 original size:79 final size:79
Alignment explanation
Indices: 62558151--62558357 Score: 292
Period size: 79 Copynumber: 2.6 Consensus size: 79
62558141 CGGGATTTAA
* * * * * * * * *
62558151 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGT-GACTTGCACAAAG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCACAAAG
62558215 GCCTTCGGTCTTAGC
65 GCCTTCGGTCTTAGC
* *
62558230 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAAGG
62558295 CCTTCGGTCTTAGC
66 CCTTCGGTCTTAGC
62558309 CCGGATATATCAACTCGCACGAATGCCTTC-GGTCTTAGCCCGGATATAT
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
62558358 TTCCAATGTT
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
78 20 0.17
79 96 0.83
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (79 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAAGG
CCTTCGGTCTTAGC
Found at i:62558274 original size:40 final size:39
Alignment explanation
Indices: 62558151--62558357 Score: 281
Period size: 39 Copynumber: 5.3 Consensus size: 39
62558141 CGGGATTTAA
* * * * *
62558151 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTC-GGTCTTAGC
* * * * * *
62558191 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGTCTTAGC
62558230 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTC-GGTCTTAGC
62558270 CCGGATATATCAACTCGCACGAATGCCTTCGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGTCTTAGC
62558309 CCGGATATATCAACTCGCACGAATGCCTTCGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGTCTTAGC
62558348 CCGGATATAT
1 CCGGATATAT
62558358 TTCCAATGTT
Statistics
Matches: 149, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 87 0.58
40 61 0.41
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGTCTTAGC
Found at i:62566381 original size:40 final size:40
Alignment explanation
Indices: 62566273--62566482 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
62566263 CGGGATTTAA
* * * * *
62566273 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
62566313 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62566353 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62566393 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62566433 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
62566473 CCGGATATAT
1 CCGGATATAT
62566483 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:62569138 original size:40 final size:39
Alignment explanation
Indices: 62569089--62569302 Score: 125
Period size: 40 Copynumber: 5.3 Consensus size: 39
62569079 GACTCGCTCG
* *
62569089 ATTGTCTTCGGGATATTGCCCGGTTATAGTGATTCGCACA
1 ATTGCCTTCGGGATATTGCCCGGTT-TAGTAATTCGCACA
62569129 ATTGCCTTCGGGA-ATTAGCCCGGATTTAGTAACTT-GCACGA
1 ATTGCCTTCGGGATATT-GCCCGG-TTTAGTAA-TTCGCAC-A
** * *
62569170 A-TGCCTTCGGGACT-TAACCCGGTTTTGGTAACTCGCACA
1 ATTGCCTTCGGGA-TATTGCCCGG-TTTAGTAATTCGCACA
* ** * *
62569209 AATGCCTTCGGGACT-TAACCCGGTTTTGGTAACTCGCACA
1 ATTGCCTTCGGGA-TATTGCCCGG-TTTAGTAATTCGCACA
* * * *
62569249 AATGCCTTCGAGA-ATTGACCCGGATTTAGTCACTTAGCACA
1 ATTGCCTTCGGGATATTG-CCCGG-TTTAGT-AATTCGCACA
**
62569290 AAAGCCTTCGGGA
1 ATTGCCTTCGGGA
62569303 CTTAGCCCGG
Statistics
Matches: 146, Mismatches: 17, Indels: 21
0.79 0.09 0.11
Matches are distributed among these distances:
39 7 0.05
40 114 0.78
41 25 0.17
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (39 bp):
ATTGCCTTCGGGATATTGCCCGGTTTAGTAATTCGCACA
Found at i:62569206 original size:80 final size:81
Alignment explanation
Indices: 62569121--62569313 Score: 244
Period size: 80 Copynumber: 2.4 Consensus size: 81
62569111 GTTATAGTGA
* * * * * *
62569121 TTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTTGCACGAATGCCTTCGGGACTTA
1 TTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGAGAATTA
* *
62569186 ACCCGGTTTTGGTAAC
66 ACCCGGATTTAGTAAC
* * * *
62569202 -TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGAGAATTG
1 TTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGAGAATTA
*
62569266 ACCCGGATTTAGTCAC
66 ACCCGGATTTAGTAAC
* *
62569282 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 TTCGCACAAATGCCTTCGGGACTTAGCCCGGA
62569314 CACCATTCGA
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 67 0.71
81 27 0.29
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
TTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGAGAATTA
ACCCGGATTTAGTAAC
Found at i:62584765 original size:19 final size:19
Alignment explanation
Indices: 62584729--62584781 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
62584719 TGCCTCTTTT
62584729 TGCATT-CATTTCATTCATCA
1 TGCATTACATTTCA-TCAT-A
62584749 T-CATTACATTTCATCATA
1 TGCATTACATTTCATCATA
*
62584767 TGCATTAAATTTCAT
1 TGCATTACATTTCAT
62584782 AAAAATACCC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 2 0.07
19 20 0.67
20 8 0.27
ACGTcount: A:0.30, C:0.21, G:0.04, T:0.45
Consensus pattern (19 bp):
TGCATTACATTTCATCATA
Found at i:62588951 original size:42 final size:41
Alignment explanation
Indices: 62588891--62589042 Score: 171
Period size: 42 Copynumber: 3.6 Consensus size: 41
62588881 AGACTATCTG
* *
62588891 TAAGACCATATCTAGGATATGGCATCATTATGAGATTTCGTG
1 TAAGACCATATCTGGGATATGGCATCA-TATGAGATTTCGTA
*
62588933 TAAGACCATATCTGGGATATGGCATCAATATGAGATTTTGTA
1 TAAGACCATATCTGGGATATGGCATC-ATATGAGATTTCGTA
* * * ** *
62588975 TAAGACCATAGT-TGGGCTATTGGCATCGAAACGAGATCCCATA
1 TAAGACCATA-TCTGGGATA-TGGCATC-ATATGAGATTTCGTA
62589018 TAAGACCATATCTGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
62589043 TGGTGTGGTA
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
42 60 0.64
43 34 0.36
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (41 bp):
TAAGACCATATCTGGGATATGGCATCATATGAGATTTCGTA
Found at i:62593755 original size:40 final size:40
Alignment explanation
Indices: 62593695--62593881 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
62593685 TGAATGATAC
* * *
62593695 CCGGGCTAAG-TCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
62593734 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
62593774 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
62593814 CCGGGCTAAGACCCGAAGGCATTAGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
62593854 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
62593882 TTATGGTTAT
Statistics
Matches: 136, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 10 0.07
40 124 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:62593891 original size:80 final size:80
Alignment explanation
Indices: 62593691--62593901 Score: 286
Period size: 80 Copynumber: 2.7 Consensus size: 80
62593681 CATTTGAATG
* * * *
62593691 ATACCCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
* *
62593755 TTCGTGCGAGTTGTT
66 TTAGTGCGAGTTGCT
* * *
62593770 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGC
62593834 ATTAGTGCGAGTTGCT
65 ATTAGTGCGAGTTGCT
*
62593850 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTA-TGGTTATATCC-GGCTAA
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGC-TAGTGGTTATATCCGGGCTAA
62593902 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 13, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
79 21 0.18
80 90 0.78
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTAGTGCGAGTTGCT
Found at i:62594125 original size:24 final size:24
Alignment explanation
Indices: 62594104--62594156 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
62594094 GTTGATGAAG
62594104 TGTGAAGTAAGTATGATTATGAGAA
1 TGTGAAGTAA-TATGATTATGAGAA
* * *
62594129 TGTGTATTAATATGATTATGGGAA
1 TGTGAAGTAATATGATTATGAGAA
62594153 TGTG
1 TGTG
62594157 TATTAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 17 0.68
25 8 0.32
ACGTcount: A:0.34, C:0.00, G:0.28, T:0.38
Consensus pattern (24 bp):
TGTGAAGTAATATGATTATGAGAA
Found at i:62594157 original size:24 final size:24
Alignment explanation
Indices: 62594115--62594164 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
62594105 GTGAAGTAAG
62594115 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
*
62594139 TATGATTATGGGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
62594163 TA
1 TA
62594165 AAGTGATTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.22, T:0.42
Consensus pattern (24 bp):
TATGATTATGAGAATGTGTATTAA
Found at i:62595571 original size:23 final size:23
Alignment explanation
Indices: 62595545--62595588 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
62595535 CTATAAAGCG
62595545 ATGCCATTCGGACTGAAAAATAT
1 ATGCCATTCGGACTGAAAAATAT
62595568 ATGCCATTCGGACTGAAAAAT
1 ATGCCATTCGGACTGAAAAAT
62595589 GCGGAAGCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (23 bp):
ATGCCATTCGGACTGAAAAATAT
Found at i:62604053 original size:71 final size:71
Alignment explanation
Indices: 62603969--62604132 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
62603959 CGATTTGTCT
62603969 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62604034 CTTTCA
66 CTTTCA
62604040 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62604105 CTTTCA
66 CTTTCA
62604111 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
62604133 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:62604170 original size:71 final size:70
Alignment explanation
Indices: 62603969--62604166 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
62603959 CGATTTGTCT
* * * *
62603969 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62604034 CTTTCA
65 CTTTCA
* * * *
62604040 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62604105 CTTTCA
65 CTTTCA
* *
62604111 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
62604167 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:62611160 original size:71 final size:71
Alignment explanation
Indices: 62611076--62611239 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
62611066 CGATTTGTCT
62611076 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62611141 CTTTCA
66 CTTTCA
62611147 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62611212 CTTTCA
66 CTTTCA
62611218 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
62611240 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:62611277 original size:71 final size:70
Alignment explanation
Indices: 62611076--62611273 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
62611066 CGATTTGTCT
* * * *
62611076 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62611141 CTTTCA
65 CTTTCA
* * * *
62611147 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62611212 CTTTCA
65 CTTTCA
* *
62611218 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
62611274 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:62615353 original size:24 final size:24
Alignment explanation
Indices: 62615321--62615526 Score: 333
Period size: 24 Copynumber: 8.6 Consensus size: 24
62615311 TATCTCAAAT
*
62615321 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
62615345 GCACTATGTGTGCGA-TTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
62615368 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
62615392 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
62615416 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
62615440 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
62615464 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
62615488 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
62615512 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
62615527 ACATAATAAG
Statistics
Matches: 175, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
23 22 0.13
24 153 0.87
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:62623088 original size:24 final size:24
Alignment explanation
Indices: 62623056--62623262 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
62623046 TATCTCAAAT
*
62623056 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
62623080 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
62623104 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
62623128 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
62623152 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
62623176 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
62623200 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
62623224 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
62623248 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
62623263 ACATAATAAG
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:62626472 original size:27 final size:27
Alignment explanation
Indices: 62626441--62626709 Score: 283
Period size: 27 Copynumber: 10.0 Consensus size: 27
62626431 AGCATTACTA
62626441 AAATACCCCTATAAGGTAGAATTACCG
1 AAATACCCCTATAAGGTAGAATTACCG
* * * **
62626468 AAATACCCTTGTAGGGTAGAATTACTA
1 AAATACCCCTATAAGGTAGAATTACCG
*
62626495 AAAT-TCCCTATAAGGTAGAATTACCG
1 AAATACCCCTATAAGGTAGAATTACCG
* *
62626521 AAATA-CCCTATAGGGTAGAATTACTG
1 AAATACCCCTATAAGGTAGAATTACCG
* *
62626547 AAATACCCCTGT-AGAGTAGAATTACTG
1 AAATACCCCTATAAG-GTAGAATTACCG
*
62626574 AAATACCCCTATAAGGTAAAATTACCG
1 AAATACCCCTATAAGGTAGAATTACCG
* *
62626601 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCCTATAAGGTAGAATTACCG
* * *
62626628 AAATACCCCTGTAGGGAAGAATTACCG
1 AAATACCCCTATAAGGTAGAATTACCG
* * * * **
62626655 AAATACCCTTTTAGGGTAGAAATACTA
1 AAATACCCCTATAAGGTAGAATTACCG
* * *
62626682 AAATACCCCTGTAAGGTAGGACTACCG
1 AAATACCCCTATAAGGTAGAATTACCG
62626709 A
1 A
62626710 TTTACCCTTG
Statistics
Matches: 201, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
26 45 0.22
27 154 0.77
28 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (27 bp):
AAATACCCCTATAAGGTAGAATTACCG
Found at i:62626492 original size:54 final size:54
Alignment explanation
Indices: 62626422--62626700 Score: 321
Period size: 54 Copynumber: 5.2 Consensus size: 54
62626412 AATCTCATAT
* * * *
62626422 CTGTAGGCTAGCATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCC
* * * *
62626476 TTGTAGGGTAGAATTACTAAAAT-TCCCTATAAGGTAGAATTACCGAAATA-CC
1 CTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCC
* *
62626528 CTATAGGGTAGAATTACTGAAATACCCCTGT-AGAGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCCCTATAAG-GTAGAATTACTGAAATACCC
* * * * *
62626582 CTATAAGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCC
* * * * * * *
62626636 CTGTAGGGAAGAATTACCGAAATACCCTTTTAGGGTAGAAATACTAAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCC
*
62626690 CTGTAAGGTAG
1 CTGTAGGGTAG
62626701 GACTACCGAT
Statistics
Matches: 196, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
52 24 0.12
53 47 0.24
54 124 0.63
55 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (54 bp):
CTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCC
Found at i:62626686 original size:81 final size:80
Alignment explanation
Indices: 62626440--62626700 Score: 337
Period size: 81 Copynumber: 3.2 Consensus size: 80
62626430 TAGCATTACT
* * * *
62626440 AAAATACCCCTATAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATTCCCTA
1 AAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTA
*
62626505 TAAGGTAGAATTACC
66 TAAGGTAGAAATACC
* * *
62626520 GAAATA-CCCTATAGGGTAGAATTACTGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCCT
1 AAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATA-CCCT
62626584 ATAAGGTA-AAATTACC
65 ATAAGGTAGAAA-TACC
* * * *
62626600 GAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAGGGAAGAATTACCGAAATACCCTT
1 AAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCC-T
* * *
62626665 TTAGGGTAGAAATACT
65 ATAAGGTAGAAATACC
*
62626681 AAAATACCCCTGTAAGGTAG
1 AAAATACCCCTATAAGGTAG
62626701 GACTACCGAT
Statistics
Matches: 159, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
79 49 0.31
80 30 0.19
81 77 0.48
82 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (80 bp):
AAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTA
TAAGGTAGAAATACC
Found at i:62627403 original size:27 final size:26
Alignment explanation
Indices: 62627359--62627410 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
62627349 CTCGCTGCAA
*
62627359 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
62627386 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
62627411 GCAGCCTTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:62627491 original size:27 final size:26
Alignment explanation
Indices: 62627451--62627510 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
62627441 ACATATATAT
* *
62627451 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTATTCTGGTGACCTAGCCACA
* * *
62627477 ATATCTATATCTGGTGACTTCGTCACA
1 ATATCTAT-TCTGGTGACCTAGCCACA
62627504 ATATCTA
1 ATATCTA
62627511 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (26 bp):
ATATCTATTCTGGTGACCTAGCCACA
Found at i:62628944 original size:24 final size:24
Alignment explanation
Indices: 62628912--62628964 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
62628902 AAGTCTGTCA
62628912 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
62628936 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
62628960 GGAGA
1 GGAGA
62628965 ACAGTGTTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.32, C:0.04, G:0.43, T:0.21
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:62629954 original size:16 final size:15
Alignment explanation
Indices: 62629928--62629959 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
62629918 ACTGGATCGG
62629928 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
62629943 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
62629959 C
1 C
62629960 GGTATTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.28, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:62630413 original size:27 final size:26
Alignment explanation
Indices: 62630375--62630484 Score: 139
Period size: 27 Copynumber: 4.1 Consensus size: 26
62630365 GAAGCGTCCC
*
62630375 GGTGGCTATGCCACAATTATCTGATCT
1 GGTGGCTCTGCCAC-ATTATCTGATCT
*
62630402 GGTGGCTCTGCCACATATATCTGTTCT
1 GGTGGCTCTGCCACAT-TATCTGATCT
62630429 GGTGGCTCTGCCACGATTATCTGTATCT
1 GGTGGCTCTGCCAC-ATTATCTG-ATCT
* * *
62630457 GGTGACTCTGTCACATTATCTGTTCT
1 GGTGGCTCTGCCACATTATCTGATCT
62630483 GG
1 GG
62630485 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 50 0.68
28 17 0.23
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (26 bp):
GGTGGCTCTGCCACATTATCTGATCT
Found at i:62630477 original size:54 final size:54
Alignment explanation
Indices: 62630375--62630484 Score: 168
Period size: 54 Copynumber: 2.0 Consensus size: 54
62630365 GAAGCGTCCC
*
62630375 GGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCT
1 GGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCT
* * *
62630429 GGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCT
1 GGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTCT
62630483 GG
1 GG
62630485 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (54 bp):
GGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCT
Found at i:62634599 original size:26 final size:26
Alignment explanation
Indices: 62634570--62634677 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
62634560 TGGTACAAAT
62634570 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
62634596 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
62634622 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* * *
62634648 TGATAATGGTTTGGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
62634674 TGAT
1 TGAT
62634678 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:62637418 original size:29 final size:29
Alignment explanation
Indices: 62637384--62637541 Score: 110
Period size: 29 Copynumber: 5.6 Consensus size: 29
62637374 TACTCGATTT
* * *
62637384 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
62637413 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
62637442 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * *
62637471 TGCACACTTAGTGCCATA-TATTTCCAG-C
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
62637499 AGCACACTTAGTGCCATA--TTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
62637526 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
62637542 ATCTCGTCAC
Statistics
Matches: 109, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
26 6 0.06
27 15 0.14
28 17 0.16
29 71 0.65
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:62637476 original size:58 final size:58
Alignment explanation
Indices: 62637383--62637541 Score: 182
Period size: 58 Copynumber: 2.8 Consensus size: 58
62637373 ATACTCGATT
** * * * * *
62637383 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCACGCACACTTAGTGCCATACACTTCCAGC
* * *
62637441 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATACACTTCCAGC
*
62637499 -AGCACACTTAGTGCC--ATATTTCCAGCACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
62637542 ATCTCGTCAC
Statistics
Matches: 88, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
55 27 0.31
57 18 0.20
58 43 0.49
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATACACTTCCAGC
Found at i:62644912 original size:29 final size:29
Alignment explanation
Indices: 62644878--62645037 Score: 101
Period size: 29 Copynumber: 5.6 Consensus size: 29
62644868 TACTCGATTT
* * *
62644878 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
62644907 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
62644936 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
62644965 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* ** * *
62644994 TGCACACTTAGTGCCATA-TTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
*
62645022 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
62645038 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
28 24 0.21
29 92 0.79
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:62644970 original size:58 final size:59
Alignment explanation
Indices: 62644877--62645037 Score: 195
Period size: 58 Copynumber: 2.8 Consensus size: 59
62644867 ATACTCGATT
** * ** * * *
62644877 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
62644935 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
62644994 T-GCACACTTAGTGCCATAT-TTTCCAGCATGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
62645038 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
57 29 0.32
58 61 0.67
59 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.27
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:62645025 original size:28 final size:29
Alignment explanation
Indices: 62644937--62645037 Score: 195
Period size: 29 Copynumber: 3.5 Consensus size: 29
62644927 CTTCGAGCTC
62644937 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
62644966 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
62644995 GCACACTTAGTGCCATAT-TTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
62645023 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
62645038 ATCTCGTCAC
Statistics
Matches: 72, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
28 25 0.35
29 47 0.65
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:62647156 original size:27 final size:27
Alignment explanation
Indices: 62647073--62647177 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
62647063 AGGAAGCGTC
*
62647073 CTGGTGGCTATGCCACAAATATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
*
62647100 CTAGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
62647127 CTGGTGGCTCTACCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
62647154 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
62647178 GCAGCCTCGC
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
26 10 0.15
27 57 0.85
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:62652461 original size:26 final size:26
Alignment explanation
Indices: 62652432--62652538 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
62652422 TGGTACAAAT
62652432 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
62652458 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
62652484 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
62652510 TGATAATGGTTTAGGTAAA-GTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
62652535 TGAT
1 TGAT
62652539 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
25 9 0.12
26 66 0.88
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:62654204 original size:27 final size:27
Alignment explanation
Indices: 62654121--62654205 Score: 111
Period size: 27 Copynumber: 3.1 Consensus size: 27
62654111 AGGAAGCGTC
*
62654121 CTGGTGGCTATGCCACAAATATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
*
62654148 CTAGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
62654175 CTGGTGGCTCTACCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
62654202 CTGG
1 CTGG
62654206 AGACTTCGTC
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
26 9 0.18
27 42 0.82
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:62659681 original size:40 final size:40
Alignment explanation
Indices: 62659637--62659712 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
62659627 CAGTACTCTA
* *
62659637 TGGTGTGTAGGGTTGGAT-GGTTTGATTTTATCCCCATATT
1 TGGTGTGTAGGGATGGATCGG-TCGATTTTATCCCCATATT
*
62659677 TGGTGTGTAGGGATGGGTCGGTCGATTTTATCCCCA
1 TGGTGTGTAGGGATGGATCGGTCGATTTTATCCCCA
62659713 CATGGTGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 30 0.94
41 2 0.06
ACGTcount: A:0.14, C:0.13, G:0.33, T:0.39
Consensus pattern (40 bp):
TGGTGTGTAGGGATGGATCGGTCGATTTTATCCCCATATT
Found at i:62660667 original size:18 final size:18
Alignment explanation
Indices: 62660644--62660680 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
62660634 AAACGGTTCA
62660644 CATAGAATAGACAATTCG
1 CATAGAATAGACAATTCG
62660662 CATAGAATAGACAATTCG
1 CATAGAATAGACAATTCG
62660680 C
1 C
62660681 GTAAATAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.22
Consensus pattern (18 bp):
CATAGAATAGACAATTCG
Found at i:62660816 original size:24 final size:24
Alignment explanation
Indices: 62660789--62660837 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
62660779 TTTTGTGATT
*
62660789 ATGACACATTTAGGGGACTCTATC
1 ATGAAACATTTAGGGGACTCTATC
62660813 ATGAAACATTTAGGGGACTCTATC
1 ATGAAACATTTAGGGGACTCTATC
62660837 A
1 A
62660838 CCACTTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (24 bp):
ATGAAACATTTAGGGGACTCTATC
Found at i:62674314 original size:30 final size:30
Alignment explanation
Indices: 62674280--62674337 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
62674270 TTTTCGAGCC
* *
62674280 TAGGGGTAAAATGGTCATTTTGCCAAAGCT
1 TAGGGGCAAAATGGTCATTTTACCAAAGCT
62674310 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
62674338 TTGTGAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGCT
Found at i:62674837 original size:93 final size:92
Alignment explanation
Indices: 62674678--62674845 Score: 223
Period size: 93 Copynumber: 1.8 Consensus size: 92
62674668 TTTGTACGCC
* ** **
62674678 AGTGTAAGACATGTCTGGGACACGCTTCGGCCGCATATGAGAGCCAGTATAAGACCATGTCTGGG
1 AGTGTAAGACATGTCCGGGACACGCTTCACCCAAATATGAGAGCCAGTATAAGACCATGTCTGGG
62674743 ACATGGCATCGACATCTAAACAAGGGCT
66 ACAT-GCATCGACATCTAAACAAGGGCT
* * *
62674771 AGTGTAAGACATGTCCGGGACATGCTTCACCCAAATTATGAGTGCCAG-AGTAAGA-CATGTTTG
1 AGTGTAAGACATGTCCGGGACACGCTTCACCCAAA-TATGAGAGCCAGTA-TAAGACCATGTCTG
62674834 GGACATGCATCG
64 GGACATGCATCG
62674846 GCCTCGACAG
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
92 6 0.09
93 43 0.66
94 16 0.25
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (92 bp):
AGTGTAAGACATGTCCGGGACACGCTTCACCCAAATATGAGAGCCAGTATAAGACCATGTCTGGG
ACATGCATCGACATCTAAACAAGGGCT
Found at i:62682291 original size:93 final size:93
Alignment explanation
Indices: 62682101--62682308 Score: 237
Period size: 93 Copynumber: 2.2 Consensus size: 93
62682091 TTTGTACTCC
* * *
62682101 AGTGTAAGACATGTCTGGGACATGCTTCGGCCACATATGAGAGCCAGCATAAGACCATGTCTGGG
1 AGTGTAAGACATGTCTAGGACATGCTTCAGCCAAATATGAGAGCCAGCATAAGACCATGTCTGGG
* * *
62682166 ACATGGCATCGGCATCCAGACAAGGGCT
66 ACATGACATCGGCATCCAGACAAGAGCA
* * *
62682194 AGTGTAAGACATGTCCAGGACATGCTTCAGCCAAATTATGAGTGCCAG-AGTAAG-TCATGTCTG
1 AGTGTAAGACATGTCTAGGACATGCTTCAGCCAAA-TATGAGAGCCAGCA-TAAGACCATGTCTG
*
62682257 GGACAT-ACATCGGCCT-C-GACAGAGATAGCA
64 GGACATGACATCGGCATCCAGACA-AG--AGCA
*
62682287 AGTGTAAGACGTGTCTAGGACA
1 AGTGTAAGACATGTCTAGGACA
62682309 CGCATCGGCT
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
90 4 0.04
91 3 0.03
92 8 0.08
93 68 0.69
94 15 0.15
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.21
Consensus pattern (93 bp):
AGTGTAAGACATGTCTAGGACATGCTTCAGCCAAATATGAGAGCCAGCATAAGACCATGTCTGGG
ACATGACATCGGCATCCAGACAAGAGCA
Found at i:62685575 original size:5 final size:5
Alignment explanation
Indices: 62685565--62685598 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
62685555 TTGTGAAAAG
62685565 ATAAA ATAAA ATAAA ATAAA GA-AAA ATAAA ATAA
1 ATAAA ATAAA ATAAA ATAAA -ATAAA ATAAA ATAA
62685599 CACACAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 1 0.04
5 25 0.93
6 1 0.04
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
ATAAA
Found at i:62690025 original size:5 final size:5
Alignment explanation
Indices: 62690011--62690052 Score: 59
Period size: 5 Copynumber: 8.4 Consensus size: 5
62690001 CCAATTTGTG
*
62690011 AAAA- AAAAT AAAAT AAAAT AAAAT AAAGAA AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT AA
62690053 CACACAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
4 4 0.12
5 26 0.76
6 4 0.12
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:62696160 original size:16 final size:16
Alignment explanation
Indices: 62696135--62696188 Score: 60
Period size: 16 Copynumber: 3.6 Consensus size: 16
62696125 AGATTAGTTA
*
62696135 TAAATT-TAATTATGT
1 TAAATTATAATTATAT
62696150 TAAATTATAA-TA-AT
1 TAAATTATAATTATAT
*
62696164 TATATTATAATTATAT
1 TAAATTATAATTATAT
*
62696180 TATATTATA
1 TAAATTATA
62696189 TTTTGAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
14 10 0.29
15 10 0.29
16 14 0.41
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
TAAATTATAATTATAT
Found at i:62696172 original size:5 final size:5
Alignment explanation
Indices: 62696143--62696190 Score: 53
Period size: 5 Copynumber: 9.6 Consensus size: 5
62696133 TATAAATTTA
* * *
62696143 ATTAT GTTAA ATTAT AATA- ATTAT ATTAT AATTAT ATTAT ATTAT ATT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT -ATTAT ATTAT ATTAT ATT
62696191 TTGAAATAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
4 3 0.09
5 27 0.77
6 5 0.14
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (5 bp):
ATTAT
Found at i:62696621 original size:2 final size:2
Alignment explanation
Indices: 62696614--62696638 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
62696604 TTGTTAACTA
62696614 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
62696639 ATAAAGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:62697147 original size:11 final size:11
Alignment explanation
Indices: 62697131--62697155 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
62697121 GAATTTAAGG
62697131 TAGAAATTGAA
1 TAGAAATTGAA
62697142 TAGAAATTGAA
1 TAGAAATTGAA
62697153 TAG
1 TAG
62697156 GAAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.20, T:0.28
Consensus pattern (11 bp):
TAGAAATTGAA
Found at i:62702353 original size:70 final size:75
Alignment explanation
Indices: 62702270--62702445 Score: 193
Period size: 70 Copynumber: 2.3 Consensus size: 75
62702260 ATGTGAACAA
* *
62702270 ATTGGAAATTAAAAGTGATTTGAATT-AAGT-AATTGAATT-AT-G-AATTATGTGAATATTTGA
1 ATTGGAAACTAAAAGTGATTTGAATTGAA-TAAATTGAATTAATAGAAAATATGTGAATATTTGA
*
62702330 AA-GTATATTG
65 AATGCATATTG
*
62702340 ATTGGAAACTAAAAGTGATTTGAATTGAATCAAATTGAATTGAATGAAGAAAATATGTGAGTATT
1 ATTGGAAACTAAAAGTGATTTGAATTGAAT-AAATTGAATT-AAT--AGAAAATATGTGAATATT
62702405 TGAAATGCATATTG
62 TGAAATGCATATTG
* * *
62702419 ATTGAAAAGTAATTAGTGATTTGAATT
1 ATTGGAAACTAA-AAGTGATTTGAATT
62702446 TAATTGGAAA
Statistics
Matches: 88, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
70 26 0.30
71 2 0.02
72 9 0.10
74 2 0.02
77 1 0.01
78 18 0.20
79 17 0.19
80 13 0.15
ACGTcount: A:0.42, C:0.02, G:0.19, T:0.37
Consensus pattern (75 bp):
ATTGGAAACTAAAAGTGATTTGAATTGAATAAATTGAATTAATAGAAAATATGTGAATATTTGAA
ATGCATATTG
Found at i:62705673 original size:40 final size:40
Alignment explanation
Indices: 62705594--62705751 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
62705584 TTCGAATGAT
* * * *
62705594 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
62705634 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
62705674 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
62705714 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
62705752 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:62705772 original size:80 final size:80
Alignment explanation
Indices: 62705594--62705781 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
62705584 TTCGAATGAT
* *
62705594 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
62705659 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
62705674 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
62705735 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
62705755 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
62705782 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:62713852 original size:40 final size:40
Alignment explanation
Indices: 62713797--62713961 Score: 190
Period size: 40 Copynumber: 4.2 Consensus size: 40
62713787 AATGATACCC
* *
62713797 GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
* *
62713837 GGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATATCCG
* * ** *
62713877 GGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
* * * *
62713917 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
62713956 GGCTAA
1 GGCTAA
62713962 ATTCCGAAGA
Statistics
Matches: 103, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 6 0.06
40 95 0.92
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
Found at i:62713930 original size:80 final size:79
Alignment explanation
Indices: 62713795--62713961 Score: 210
Period size: 80 Copynumber: 2.1 Consensus size: 79
62713785 TGAATGATAC
* * ** *
62713795 CCGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTCG
1 CCGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATT-G
*
62713859 TGCGAGTTGTTATAT
65 TGCGAGTGGTTATAT
* * *
62713874 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CC-GGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTG
**
62713939 TGCTTGTGGTTATAT
65 TGCGAGTGGTTATAT
62713954 CCGGCTAA
1 CCGGCTAA
62713962 ATTCCGAAGA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
79 8 0.11
80 64 0.85
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGCTAAGACCCGAAGGCATTTATGCAAGTGACCAAATCCGGGCTAAGACCCGAAGGCAATTGT
GCGAGTGGTTATAT
Found at i:62720812 original size:40 final size:40
Alignment explanation
Indices: 62720740--62720866 Score: 190
Period size: 40 Copynumber: 3.2 Consensus size: 40
62720730 TACCTTGGAT
* *
62720740 TTAG-CCGGATATAGCT-ACTCGCTTCAACTGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGC-ACAAATGCCTTCGGGAC
62720780 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
62720820 TTAGCCCGGATATAGTAACT--CACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
62720858 TTAGCCCGG
1 TTAGCCCGG
62720867 TTATCATCCG
Statistics
Matches: 83, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
38 27 0.33
40 40 0.48
41 16 0.19
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:62728735 original size:39 final size:39
Alignment explanation
Indices: 62728628--62728870 Score: 328
Period size: 39 Copynumber: 6.4 Consensus size: 39
62728618 AAACCAAGTA
* * *
62728628 CCTT-GGGATTTAGCCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATG
62728666 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
*
62728706 CCTTCGGGACTTAGCCGGATATAGTAACTCGGACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
*
62728745 CCTT--AG-C--A--CGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
62728777 -CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
62728816 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
62728855 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
62728871 CGGTTATCAT
Statistics
Matches: 185, Mismatches: 7, Indels: 25
0.85 0.03 0.12
Matches are distributed among these distances:
31 3 0.02
32 23 0.12
33 1 0.01
34 2 0.01
36 2 0.01
37 1 0.01
38 4 0.02
39 102 0.55
40 47 0.25
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:62728795 original size:71 final size:74
Alignment explanation
Indices: 62728675--62728873 Score: 307
Period size: 71 Copynumber: 2.7 Consensus size: 74
62728665 GCCTTCGGGA
*
62728675 CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG-CCGGATATAGTAACTCGGA
1 CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
62728739 CAAATG-C-
66 CAAATGCCG
*
62728746 CTTAGCACGGATATAGTAACTCGCACAAATG-CTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
62728810 CAAATGCCTTCGG
66 CAAATG-C--C-G
62728823 ACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 -CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
62728874 TTATCATCCG
Statistics
Matches: 116, Mismatches: 3, Indels: 10
0.90 0.02 0.08
Matches are distributed among these distances:
70 13 0.11
71 54 0.47
75 1 0.01
78 30 0.26
79 18 0.16
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (74 bp):
CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
CAAATGCCG
Found at i:62728834 original size:110 final size:110
Alignment explanation
Indices: 62728637--62728858 Score: 369
Period size: 110 Copynumber: 2.0 Consensus size: 110
62728627 ACCTTGGGAT
* *
62728637 TTAGCCGGATATAGCTACTCGCTCAACTGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 TTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
*
62728702 AATGCCTTCGGGACTTAGCCGGATATAGTAACTCGGACAAATGCC
66 AATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCC
62728747 TTAGCACGGATATAG-TAACTCGCACAAATG-CTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 TTAGC-CGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
62728810 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCC
64 CAAATGCCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATGCC
62728857 TT
1 TT
62728859 CGGGACTTAG
Statistics
Matches: 106, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
109 8 0.08
110 78 0.74
111 20 0.19
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (110 bp):
TTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
AATGCCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCC
Found at i:62731078 original size:93 final size:93
Alignment explanation
Indices: 62730963--62731133 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
62730953 GCCCCTAAGT
*
62730963 GAACTCGGACTCAAGTCAACGAGCTC-GAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
62731027 ATGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
62731056 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62731121 CGAGTTCGGATGC
66 CGAGTTCGGATGC
62731134 TAAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 72 0.97
94 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:62731121 original size:46 final size:46
Alignment explanation
Indices: 62730958--62731127 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
62730948 AACCCGCCCC
* *
62730958 TAAGTGAACTCGGACTCAAGTCAACGAGCTC-GAGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGA-CATTCGCATCCA
* * *
62731004 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GAC-A-TTCGCATCCA
* *
62731052 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
62731097 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
62731128 GGATGCTAAA
Statistics
Matches: 102, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 3 0.03
46 54 0.53
47 25 0.25
48 2 0.02
49 2 0.02
50 5 0.05
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
Found at i:62742528 original size:15 final size:15
Alignment explanation
Indices: 62742504--62742533 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
62742494 ACTAATGTAT
62742504 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
62742519 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
62742534 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:62744004 original size:64 final size:64
Alignment explanation
Indices: 62743924--62744106 Score: 165
Period size: 67 Copynumber: 2.8 Consensus size: 64
62743914 AGACATTATG
* * *
62743924 ATGTAGCTAGGCCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
62743988 ATGTAGCTAGGTCGCATGCGTGGTTCCAACTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
62744053 AA
63 AA
* * * ** * *
62744055 AT-TGGCTA-GTCACATGGGTGGTACTGCGTGTTCACTATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
62744107 CGAACTATAT
Statistics
Matches: 94, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
61 1 0.01
62 18 0.19
63 1 0.01
64 22 0.23
65 13 0.14
66 7 0.07
67 32 0.34
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:62746564 original size:64 final size:64
Alignment explanation
Indices: 62746483--62746665 Score: 178
Period size: 67 Copynumber: 2.8 Consensus size: 64
62746473 AGACATTATG
* * *
62746483 ATGTAGCTAGGTCGCATGGCTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGCTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
62746547 ATGTAGCTAGGTCGCAT-GCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGC-TGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
62746611 TAA
62 TAA
* * * *
62746614 AT-TGGCTA-GTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGCTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
62746666 CGAACTATAT
Statistics
Matches: 97, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
61 1 0.01
62 19 0.20
63 3 0.03
64 22 0.23
65 11 0.11
66 9 0.09
67 32 0.33
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGCTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:62756526 original size:24 final size:25
Alignment explanation
Indices: 62756493--62756600 Score: 123
Period size: 24 Copynumber: 4.4 Consensus size: 25
62756483 CTGGAGGCCT
62756493 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
**
62756517 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTCAATAAACTGGGGC-AA
**
62756543 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
* *
62756568 AGCCCTTTTCAGT-AACTGGGGCAT
1 AGCCCTTTTCAATAAACTGGGGCAA
62756592 AGCCCTTTT
1 AGCCCTTTT
62756601 GCACTTCCTC
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
23 5 0.07
24 25 0.33
25 23 0.30
26 23 0.30
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:62756551 original size:26 final size:25
Alignment explanation
Indices: 62756506--62756600 Score: 122
Period size: 26 Copynumber: 3.8 Consensus size: 25
62756496 CTCTTTTAAT
62756506 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* *
62756531 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGC-AAAGCCCTTTTTGATA
*
62756557 AACTGGGGCAAAGCCC-TTTTCAGT-
1 AACTGGGGCAAAGCCCTTTTTGA-TA
*
62756581 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
62756601 GCACTTCCTC
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
24 18 0.30
25 20 0.33
26 23 0.38
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:62757556 original size:27 final size:27
Alignment explanation
Indices: 62757504--62757713 Score: 147
Period size: 27 Copynumber: 7.7 Consensus size: 27
62757494 TTTCATCCTA
* * *
62757504 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
62757531 CAAGGGTATTTTAGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
62757558 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-C
** *
62757587 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAC
* * *
62757614 CAGGGGCATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
62757641 TAAGGGTATTTCGATAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
62757668 C-AGTAGTATTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
* *
62757695 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTTGGTAATT
62757714 CTATCCTACA
Statistics
Matches: 144, Mismatches: 33, Indels: 12
0.76 0.17 0.06
Matches are distributed among these distances:
26 3 0.02
27 110 0.76
28 16 0.11
29 15 0.10
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:62757783 original size:27 final size:27
Alignment explanation
Indices: 62757745--62757836 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
62757735 GTAATTTCAC
*
62757745 AATCAAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
62757772 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* * *
62757799 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
62757826 AATCGAGGGTA
1 AATCGAGGGTA
62757837 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.02
27 55 0.96
28 1 0.02
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:62757859 original size:54 final size:53
Alignment explanation
Indices: 62757735--62757861 Score: 132
Period size: 54 Copynumber: 2.4 Consensus size: 53
62757725 GGGTATTTCA
* * * * *
62757735 GTAATTTCACAATCAAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATG
***
62757788 GTAATTTTGTA-AATCGAGGGTAAAACGATAATTCTATAAA-TCGAGGGTACTTTG
1 GTAA-TTT-TACAATCGAGGGTAAAACGATAATTCTATAAACT-GAGGGTAAAATG
62757842 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAA-TCGAGGG
62757862 CATTTCAATA
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
52 2 0.03
53 10 0.16
54 48 0.79
55 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATG
Found at i:62762533 original size:22 final size:21
Alignment explanation
Indices: 62762503--62762552 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
62762493 ATGAAATATG
*
62762503 GTGATATATGTG-ATCAATGTAT
1 GTGAAATATGTGTAT-AATG-AT
*
62762525 GTGAAATATTTGTATAATGAT
1 GTGAAATATGTGTATAATGAT
62762546 GTGAAAT
1 GTGAAAT
62762553 GTTAGGTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 9 0.36
22 14 0.56
23 2 0.08
ACGTcount: A:0.36, C:0.02, G:0.22, T:0.40
Consensus pattern (21 bp):
GTGAAATATGTGTATAATGAT
Found at i:62767809 original size:25 final size:24
Alignment explanation
Indices: 62767738--62767820 Score: 114
Period size: 24 Copynumber: 3.4 Consensus size: 24
62767728 CTGGAGGCCT
*
62767738 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
62767762 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
* *
62767786 AGCCCTTTTCGGTAAACTGAGGCAA
1 AGCCCTTTT-GATAAACTGGGGCAA
62767811 AGCCCTTTTG
1 AGCCCTTTTG
62767821 CACTTCCTCC
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
23 7 0.13
24 25 0.46
25 22 0.41
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:62767878 original size:10 final size:10
Alignment explanation
Indices: 62767865--62767903 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
62767855 ATATATGAAT
62767865 ATATCATGGC
1 ATATCATGGC
*
62767875 ATATCATGTGA
1 ATATCATG-GC
62767886 ATATCATGGC
1 ATATCATGGC
62767896 ATATCATG
1 ATATCATG
62767904 TATAAAGCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:62767891 original size:21 final size:21
Alignment explanation
Indices: 62767865--62767904 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
62767855 ATATATGAAT
62767865 ATATCATGGCATATCATGTGA
1 ATATCATGGCATATCATGTGA
62767886 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
62767905 ATAAAGCAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGA
Found at i:62767971 original size:25 final size:25
Alignment explanation
Indices: 62767943--62767993 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
62767933 ATAACACATC
* *
62767943 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAATGGTCATTTTCA
62767968 CCTAGGGGCAAAATGGTCATTTTCA
1 CCTAGGGGCAAAATGGTCATTTTCA
62767993 C
1 C
62767994 ATTATAAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTCA
Found at i:62770584 original size:39 final size:39
Alignment explanation
Indices: 62770552--62770678 Score: 155
Period size: 39 Copynumber: 3.2 Consensus size: 39
62770542 TCCAGCGCGT
* *
62770552 AGCCTGTGGACCTTAAGTCCGGTTATAATTCCAGCACAG
1 AGCCTGCGGACCTTAAGTCCGGGTATAATTCCAGCACAG
* *
62770591 AGCCTGCGGACCTTAAGTCCGGGTATAATTCCAGCATAT
1 AGCCTGCGGACCTTAAGTCCGGGTATAATTCCAGCACAG
* * * * * *
62770630 AGCCTGCAGGTCTTTAAGCCCGGATATAATTCCAGCATAT
1 AGCCTGC-GGACCTTAAGTCCGGGTATAATTCCAGCACAG
62770670 AGCCTGCGG
1 AGCCTGCGG
62770679 GTCTTTAAGC
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 44 0.56
40 35 0.44
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
AGCCTGCGGACCTTAAGTCCGGGTATAATTCCAGCACAG
Done.