Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 210 of 335
Found at i:62770658 original size:40 final size:39
Alignment explanation
Indices: 62770564--62770695 Score: 174
Period size: 40 Copynumber: 3.3 Consensus size: 39
62770554 CCTGTGGACC
* * * * * *
62770564 TTAAGTCCGGTTATAATTCCAGCACAGAGCCTGCGGACC
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGTCT
* *
62770603 TTAAGTCCGGGTATAATTCCAGCATATAGCCTGCAGGTCT
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGC-GGTCT
62770643 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGC-GGTCT
62770683 TTAAGCCCGGATA
1 TTAAGCCCGGATA
62770696 CACATCAAAT
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 31 0.37
40 53 0.63
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.27
Consensus pattern (39 bp):
TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGTCT
Found at i:62787997 original size:27 final size:27
Alignment explanation
Indices: 62787940--62788096 Score: 124
Period size: 27 Copynumber: 5.8 Consensus size: 27
62787930 GACCTCCGAC
* **
62787940 TTGTAAAATTACT-AACATACCCCAGGG
1 TTGTAAAATTACTGAA-ATACCCCTGAT
* *
62787967 TTGTAAAATTACCGAAATACCTCTGAT
1 TTGTAAAATTACTGAAATACCCCTGAT
* * *
62787994 TTGTGAAATTATTGAGATA-CCCTCGAT
1 TTGTAAAATTACTGAAATACCCCT-GAT
* * *
62788021 TTGTGAAATTA-TCGAAATACCCCTAAC
1 TTGTAAAATTACT-GAAATACCCCTGAT
*
62788048 TTGTAAAATTACTAAAATACCCCATG-T
1 TTGTAAAATTACTGAAATACCCC-TGAT
* *
62788075 TGGTAAAGTTACTGAAATACCC
1 TTGTAAAATTACTGAAATACCC
62788097 TTGTAGGGTA
Statistics
Matches: 104, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
26 4 0.04
27 92 0.88
28 8 0.08
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCCTGAT
Found at i:62788004 original size:54 final size:54
Alignment explanation
Indices: 62787931--62788095 Score: 154
Period size: 54 Copynumber: 3.1 Consensus size: 54
62787921 GGTCGTTAAG
* * *
62787931 ACCTCCGACTTGTAAAATTACTAACATACCCCAGGGTTGTAAAATTACCGAAAT
1 ACCTCTGACTTGTAAAATTACTAAAATACCCCAGAGTTGTAAAATTACCGAAAT
* * * * * * * *
62787985 ACCTCTGATTTGTGAAATTATTGAGATACCCTC-GATTTGTGAAATTATCGAAAT
1 ACCTCTGACTTGTAAAATTACTAAAATACCC-CAGAGTTGTAAAATTACCGAAAT
* * * * *
62788039 ACCCCTAACTTGTAAAATTACTAAAATACCCCA-TGTTGGTAAAGTTACTGAAAT
1 ACCTCTGACTTGTAAAATTACTAAAATACCCCAGAGTT-GTAAAATTACCGAAAT
62788093 ACC
1 ACC
62788096 CTTGTAGGGT
Statistics
Matches: 85, Mismatches: 23, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (54 bp):
ACCTCTGACTTGTAAAATTACTAAAATACCCCAGAGTTGTAAAATTACCGAAAT
Found at i:62788106 original size:27 final size:27
Alignment explanation
Indices: 62788050--62788115 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
62788040 CCCCTAACTT
*
62788050 GTAAAATTACTAAAATACCCCATGTTG
1 GTAAAATTACTAAAATACCCCATGTGG
* * *
62788077 GTAAAGTTACTGAAATA-CCCTTGTAGG
1 GTAAAATTACTAAAATACCCCATGT-GG
*
62788104 GTAAAATGACTA
1 GTAAAATTACTA
62788116 TTTTGCCCTT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
26 6 0.19
27 25 0.81
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (27 bp):
GTAAAATTACTAAAATACCCCATGTGG
Found at i:62788462 original size:22 final size:22
Alignment explanation
Indices: 62788414--62788473 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
62788404 TTAATCTGAT
62788414 TATGGCTCTGTGCCAACCTAAA
1 TATGGCTCTGTGCCAACCTAAA
* * * * *
62788436 AATGGCTCTGTGCCATCTTGAC
1 TATGGCTCTGTGCCAACCTAAA
*
62788458 TATGGCTTTGTGCCAA
1 TATGGCTCTGTGCCAA
62788474 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
TATGGCTCTGTGCCAACCTAAA
Found at i:62790988 original size:80 final size:80
Alignment explanation
Indices: 62790857--62791057 Score: 217
Period size: 80 Copynumber: 2.5 Consensus size: 80
62790847 ATGACATCTA
* * * ** * * *
62790857 GGCTAAGTCCCGAAGACATTTATGCTAA-TAATTATATCCGGGTTAAGACCCGAAGGCAATTGTG
1 GGCTAAGACCCGAAGGCATTCATGC-AAGTGGTTAAATCCGGGCTAACACCCGAAGGCAATTGTG
* *
62790921 CTAGT-GACTACATCCG
65 CAACTCG-CTACATCCG
* * *
62790937 GGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAACACCCGAAGGCATTTGTGC
1 GGCTAAGACCCGAAGGCATTCATGCAAGTGGTTAAATCCGGGCTAACACCCGAAGGCAATTGTGC
* *
62791002 AACTCGTTATATCCG
66 AACTCGCTACATCCG
* *
62791017 GGCTAAGACCCGAAGGCATTCATGCATGTGGTTATATCCGG
1 GGCTAAGACCCGAAGGCATTCATGCAAGTGGTTAAATCCGG
62791058 TTGTATTCCG
Statistics
Matches: 101, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
79 2 0.02
80 98 0.97
81 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (80 bp):
GGCTAAGACCCGAAGGCATTCATGCAAGTGGTTAAATCCGGGCTAACACCCGAAGGCAATTGTGC
AACTCGCTACATCCG
Found at i:62791035 original size:40 final size:39
Alignment explanation
Indices: 62790857--62791057 Score: 197
Period size: 40 Copynumber: 5.0 Consensus size: 39
62790847 ATGACATCTA
* * * *
62790857 GGCTAAGTCCCGAAGACATTTATGCTAA-TAATTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGC-AAGT-GTTATATCCG
* * * * *
62790897 GGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGTG-TTATATCCG
* *
62790937 GGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAG-TGTTATATCCG
* *
62790977 GGCTAACACCCGAAGGCATTTGTGCAACTCGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTATATCCG
** *
62791017 GGCTAAGACCCGAAGGCATTCATGCATGTGGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTATATCCG
62791057 G
1 G
62791058 TTGTATTCCG
Statistics
Matches: 132, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 2 0.02
40 128 0.97
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (39 bp):
GGCTAAGACCCGAAGGCATTTGTGCAAGTGTTATATCCG
Found at i:62792673 original size:16 final size:17
Alignment explanation
Indices: 62792641--62792673 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
62792631 AAATAAGAAG
62792641 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
62792659 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
62792674 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:62796077 original size:27 final size:27
Alignment explanation
Indices: 62796019--62796122 Score: 88
Period size: 27 Copynumber: 3.9 Consensus size: 27
62796009 TAAAATTATT
* * * *
62796019 GAAATACCCTCGGGTTTGTAAAACTACC
1 GAAATA-CCTCTGATTTGTGAAATTACC
* *
62796047 GAAATACCTCTGATATGTGAAATTACT
1 GAAATACCTCTGATTTGTGAAATTACC
*
62796074 GAAATACC-CTCAATTTGTGAAATTACC
1 GAAATACCTCT-GATTTGTGAAATTACC
* *
62796101 GAAATATCTC-GACTTGT-AAATT
1 GAAATACCTCTGATTTGTGAAATT
62796123 TATTGAAATA
Statistics
Matches: 62, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
25 5 0.08
26 7 0.11
27 43 0.69
28 7 0.11
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (27 bp):
GAAATACCTCTGATTTGTGAAATTACC
Found at i:62796147 original size:27 final size:27
Alignment explanation
Indices: 62796115--62796203 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
62796105 TATCTCGACT
* *
62796115 TGTAAATTTATTGAAATACCCTCGGTTG
1 TGTAAAATTATTGAAATACCCT-GGTAG
* *
62796143 T-TAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATTGAAATACCCTGGTAG
* *
62796169 TGTAAAATTATTGAAATATCCTTGTAG
1 TGTAAAATTATTGAAATACCCTGGTAG
*
62796196 GGTAAAAT
1 TGTAAAAT
62796204 GATTATTTTG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.08
27 48 0.91
28 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (27 bp):
TGTAAAATTATTGAAATACCCTGGTAG
Found at i:62796150 original size:53 final size:52
Alignment explanation
Indices: 62796002--62796161 Score: 180
Period size: 53 Copynumber: 3.0 Consensus size: 52
62795992 TTAAGACCCC
*
62796002 CGACTTGTAAAATTATTGAAATACCCTCGGGTTTGTAAAACTACCGAAATACCT
1 CGACTTGT-AAATTATTGAAATACCCTC-GGTTTGTAAAATTACCGAAATACCT
* ** * *
62796056 CTGA-TATGTGAAATTACTGAAATACCCTCAATTTGTGAAATTACCGAAATATCT
1 C-GACT-TGT-AAATTATTGAAATACCCTCGGTTTGTAAAATTACCGAAATACCT
*
62796110 CGACTTGTAAATTTATTGAAATACCCTCGG-TTGTTAAAATTATCGAAATACC
1 CGACTTGTAAA-TTATTGAAATACCCTCGGTTTG-TAAAATTACCGAAATACC
62796162 CTTGTAGTGT
Statistics
Matches: 88, Mismatches: 13, Indels: 11
0.79 0.12 0.10
Matches are distributed among these distances:
52 6 0.07
53 35 0.40
54 24 0.27
55 23 0.26
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.33
Consensus pattern (52 bp):
CGACTTGTAAATTATTGAAATACCCTCGGTTTGTAAAATTACCGAAATACCT
Found at i:62798466 original size:40 final size:40
Alignment explanation
Indices: 62798412--62798568 Score: 260
Period size: 40 Copynumber: 3.9 Consensus size: 40
62798402 CGGATGTAAC
* *
62798412 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
62798452 AACCCGCACGAATGCCTTCGGGACTTGACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
62798492 AACCCGCACGAATGCCTTCGAGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
62798532 AACCCACACGAATGCCTTTGGGACTTAACCCGGTTAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTAT
62798569 TTTTTTTTTC
Statistics
Matches: 109, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 109 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:62805796 original size:40 final size:40
Alignment explanation
Indices: 62805713--62805867 Score: 260
Period size: 39 Copynumber: 3.9 Consensus size: 40
62805703 CGGATGTAAC
* *
62805713 AACCAGCACAAATGCCTTCGGGACTTAA-CCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
62805752 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
62805792 AACCCGCACGAATGCCTTC-GGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
62805831 AACCCACACGAATGCCTTTGGGACTTAACCCGGTTAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTAT
62805868 TTTTTTTTCC
Statistics
Matches: 110, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
39 63 0.57
40 47 0.43
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:62805824 original size:79 final size:79
Alignment explanation
Indices: 62805713--62805867 Score: 258
Period size: 79 Copynumber: 2.0 Consensus size: 79
62805703 CGGATGTAAC
*
62805713 AACCAGCACAAATGCCTTCGGGACTTAACCGGTTATAATAACCCGCACGAATGCCTTCGGGACTT
1 AACCAGCACAAATGCCTTCGGGACTTAACCGGTTATAATAACCCACACGAATGCCTTCGGGACTT
62805778 AACCCGGTTATAAT
66 AACCCGGTTATAAT
* * *
62805792 AACCCGCACGAATGCCTTC-GGACTTAACCCGGTTATAATAACCCACACGAATGCCTTTGGGACT
1 AACCAGCACAAATGCCTTCGGGACTTAA-CCGGTTATAATAACCCACACGAATGCCTTCGGGACT
62805856 TAACCCGGTTAT
65 TAACCCGGTTAT
62805868 TTTTTTTTCC
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
78 8 0.11
79 63 0.89
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (79 bp):
AACCAGCACAAATGCCTTCGGGACTTAACCGGTTATAATAACCCACACGAATGCCTTCGGGACTT
AACCCGGTTATAAT
Found at i:62813072 original size:40 final size:40
Alignment explanation
Indices: 62812989--62813144 Score: 278
Period size: 40 Copynumber: 3.9 Consensus size: 40
62812979 CGGATGTAAC
* *
62812989 AACCAGCACAAATGCCTTCGGGACTTAA-CCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
62813028 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
62813068 AACCCGCACGAATGCCTTCGGGACTTAACCCGATTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
62813108 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTAT
62813145 TTTTTTTTTC
Statistics
Matches: 112, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 26 0.23
40 86 0.77
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:62814090 original size:27 final size:27
Alignment explanation
Indices: 62814031--62814090 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
62814021 GTTTGGGCTA
* *
62814031 GGCCCAATTGATTCTGTTATGGGCTGT
1 GGCCCAAATGATTCTGTAATGGGCTGT
* *
62814058 GACCCAAATGATAT-TGTAATGGGCTTT
1 GGCCCAAATGAT-TCTGTAATGGGCTGT
62814085 GGCCCA
1 GGCCCA
62814091 CATATGCTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.32
Consensus pattern (27 bp):
GGCCCAAATGATTCTGTAATGGGCTGT
Found at i:62815503 original size:25 final size:25
Alignment explanation
Indices: 62815464--62815520 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
62815454 GTAAGGAGGG
62815464 GATAA-GGGAGAAGATTTAGGAGCT
1 GATAAGGGGAGAAGATTTAGGAGCT
62815488 GATAAGGGGAGAAGATTTAGGAGCT
1 GATAAGGGGAGAAGATTTAGGAGCT
62815513 GATCAAGG
1 GAT-AAGG
62815521 AGCAAGAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 5 0.16
25 22 0.71
26 4 0.13
ACGTcount: A:0.37, C:0.05, G:0.39, T:0.19
Consensus pattern (25 bp):
GATAAGGGGAGAAGATTTAGGAGCT
Found at i:62816511 original size:6 final size:6
Alignment explanation
Indices: 62816496--62816652 Score: 137
Period size: 6 Copynumber: 25.8 Consensus size: 6
62816486 AACCAAAATG
* *
62816496 AGAATT AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
62816544 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
62816593 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT ACGTGAT- AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
62816642 AGAATC AGAAT
1 AGAATC AGAAT
62816653 GTGAATGCAA
Statistics
Matches: 126, Mismatches: 11, Indels: 28
0.76 0.07 0.17
Matches are distributed among these distances:
5 10 0.08
6 103 0.82
7 9 0.07
8 4 0.03
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:62816603 original size:55 final size:55
Alignment explanation
Indices: 62816525--62816652 Score: 204
Period size: 55 Copynumber: 2.3 Consensus size: 55
62816515 GTAACAGAAT
* *
62816525 CAGAATCAGAATCA-ATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGA-ATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
*
62816580 CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTACGTGA
1 CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
*
62816635 TAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
62816653 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
55 67 0.99
56 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (55 bp):
CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
Found at i:62816840 original size:27 final size:27
Alignment explanation
Indices: 62816770--62816843 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
62816760 AGCATGGCTG
* *
62816770 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
* *
62816796 CCAG-ATACAAATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
62816823 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
62816844 AACCCACCTA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.11
27 30 0.79
28 3 0.08
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:62817233 original size:27 final size:26
Alignment explanation
Indices: 62817154--62817236 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
62817144 TCGATCGGTC
** * *
62817154 AACAGATATTGTGATAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
62817180 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
62817207 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
62817234 AAC
1 AAC
62817237 GCTTCCTCCA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:62817459 original size:27 final size:27
Alignment explanation
Indices: 62817429--62817623 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
62817419 GGGGCAAAAT
* * * *
62817429 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
62817456 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62817483 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
62817510 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
62817537 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62817564 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62817591 GGAAATT-TACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62817617 AGTAATT
1 GGTAATT
62817624 TCACAATCAA
Statistics
Matches: 145, Mismatches: 23, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
26 23 0.16
27 122 0.84
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:62817658 original size:27 final size:27
Alignment explanation
Indices: 62817628--62818142 Score: 647
Period size: 27 Copynumber: 19.2 Consensus size: 27
62817618 GTAATTTCAC
* *
62817628 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
62817655 AATCGAAGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
62817682 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
62817709 AATCAAGGGTAAAACGGTAGTTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
62817736 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
62817763 AATC-AGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
62817789 AA-CTGAGGGTAAAAC--TAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
62817814 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
62817841 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
62817868 AATCGAGGGTGAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
62817895 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
62817922 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
62817949 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
62817976 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
62818003 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
62818030 AAGT-GAGGGTAAAACGGTAATTCTGTA
1 AA-TCGAGGGTAAAACGGTAATTCTGTA
62818057 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
62818084 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
62818111 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
62818138 AATCG
1 AATCG
62818143 GGAGTACTTT
Statistics
Matches: 426, Mismatches: 45, Indels: 34
0.84 0.09 0.07
Matches are distributed among these distances:
25 23 0.05
26 29 0.07
27 369 0.87
28 5 0.01
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:62820162 original size:6 final size:6
Alignment explanation
Indices: 62820147--62820303 Score: 137
Period size: 6 Copynumber: 25.8 Consensus size: 6
62820137 AACCAAAATG
* *
62820147 AGAATT AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
62820195 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
62820244 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT ACGTGA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
62820293 AGAATC AGAAT
1 AGAATC AGAAT
62820304 GTGAATGCAA
Statistics
Matches: 125, Mismatches: 12, Indels: 28
0.76 0.07 0.17
Matches are distributed among these distances:
5 9 0.07
6 104 0.83
7 9 0.07
8 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:62820254 original size:55 final size:55
Alignment explanation
Indices: 62820176--62820303 Score: 213
Period size: 55 Copynumber: 2.3 Consensus size: 55
62820166 GTAACAGAAT
* *
62820176 CAGAATCAGAATCA-ATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGA-ATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
*
62820231 CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTACGTGA
1 CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
62820286 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
62820304 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
55 68 0.99
56 1 0.01
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (55 bp):
CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
Found at i:62820290 original size:49 final size:52
Alignment explanation
Indices: 62820207--62820303 Score: 80
Period size: 49 Copynumber: 1.9 Consensus size: 52
62820197 TAACAGAATC
* * *
62820207 AGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCAG--TAAC--
1 AGAATCAGAATCAGAATCA-GTAACAGAATCAGAATCAGAATCAGAATTACGT
*
62820256 AGAATCAGAATCAGAATCAGTATTAC-GTGA-CAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTA--ACAG-AATCAGAATCAGAATCAGAAT
62820304 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
48 2 0.05
49 34 0.85
50 3 0.08
51 1 0.03
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (52 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATTACGT
Found at i:62820491 original size:27 final size:27
Alignment explanation
Indices: 62820421--62820494 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
62820411 AGCATGGCTG
* *
62820421 CCAGAAT-AGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
* *
62820447 CCAG-ATACAAATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
62820474 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
62820495 AACCCACCTA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
25 2 0.05
26 4 0.11
27 29 0.76
28 3 0.08
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:62821275 original size:27 final size:27
Alignment explanation
Indices: 62821080--62821267 Score: 250
Period size: 27 Copynumber: 7.0 Consensus size: 27
62821070 GGGGCAAAAT
* * * *
62821080 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
62821107 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62821134 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62821161 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
62821188 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
62821215 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
62821242 GGAAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
62821268 TAGTAATTTC
Statistics
Matches: 140, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:62821310 original size:27 final size:27
Alignment explanation
Indices: 62821280--62821794 Score: 656
Period size: 27 Copynumber: 19.1 Consensus size: 27
62821270 GTAATTTCAC
*
62821280 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
62821307 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
62821334 AA-C-AGAGGTAAACCAGTAATTCTGTA
1 AATCGAG-GGTAAAACGGTAATTCTGTA
* * **
62821360 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
62821387 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
62821414 AATCGA-GGCAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
62821440 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
62821467 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
62821494 AA-CTGAAGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * *
62821521 AATCGACGGTGAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
62821548 AA-CTGAGGGTAAAACGGTAATTCTTTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
62821575 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
62821602 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
62821629 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
62821656 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
62821683 AAGT-GAGGGTAAAACGGTAATTCTGTA
1 AA-TCGAGGGTAAAACGGTAATTCTGTA
62821710 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
62821737 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
62821764 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
62821791 AATC
1 AATC
62821795 AGTACTTTGG
Statistics
Matches: 435, Mismatches: 37, Indels: 31
0.86 0.07 0.06
Matches are distributed among these distances:
25 3 0.01
26 46 0.11
27 378 0.87
28 8 0.02
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:62823814 original size:27 final size:27
Alignment explanation
Indices: 62823774--62823884 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
62823764 AGGAAGCGTC
* * *
62823774 CTGGTGGCTATGCCACAACTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
62823801 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGTT
*
62823828 CTGGTGGCTCTACCACAATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* *
62823855 CTGGTGACTTTGCCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
62823881 CTGG
1 CTGG
62823885 CAGCCGTGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 15 0.20
27 58 0.77
28 2 0.03
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:62826834 original size:23 final size:23
Alignment explanation
Indices: 62826808--62826884 Score: 61
Period size: 23 Copynumber: 3.3 Consensus size: 23
62826798 TGATTATTAG
62826808 CAAACATAGTGCGCATTTATACC
1 CAAACATAGTGCGCATTTATACC
* *
62826831 CAAACAATA-TAGAC-CA-TAATACAAG
1 CAAAC-ATAGT-G-CGCATTTATAC--C
62826856 CAAACATAGTGCGCATTTATACC
1 CAAACATAGTGCGCATTTATACC
*
62826879 TAAACA
1 CAAACA
62826885 ATATAGACCA
Statistics
Matches: 41, Mismatches: 5, Indels: 16
0.66 0.08 0.26
Matches are distributed among these distances:
23 17 0.41
24 12 0.29
25 12 0.29
ACGTcount: A:0.44, C:0.23, G:0.10, T:0.22
Consensus pattern (23 bp):
CAAACATAGTGCGCATTTATACC
Found at i:62826877 original size:48 final size:48
Alignment explanation
Indices: 62826806--62826899 Score: 179
Period size: 48 Copynumber: 2.0 Consensus size: 48
62826796 ATTGATTATT
62826806 AGCAAACATAGTGCGCATTTATACCCAAACAATATAGACCATAATACA
1 AGCAAACATAGTGCGCATTTATACCCAAACAATATAGACCATAATACA
*
62826854 AGCAAACATAGTGCGCATTTATACCTAAACAATATAGACCATAATA
1 AGCAAACATAGTGCGCATTTATACCCAAACAATATAGACCATAATA
62826900 GAACTTAAGT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.46, C:0.21, G:0.11, T:0.22
Consensus pattern (48 bp):
AGCAAACATAGTGCGCATTTATACCCAAACAATATAGACCATAATACA
Found at i:62830922 original size:6 final size:6
Alignment explanation
Indices: 62830883--62831008 Score: 62
Period size: 6 Copynumber: 20.3 Consensus size: 6
62830873 AAGAAACATT
* * * *
62830883 ATCAGA A-CTAGA ATCAAA ATGAGAA ATCACA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAG-A ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
62830933 ATCAGA ATTAGA ATCAGA ATCAAA ATTAG- GTGACGGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
62830982 ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
62831009 GGGAATGCAA
Statistics
Matches: 88, Mismatches: 20, Indels: 24
0.67 0.15 0.18
Matches are distributed among these distances:
5 5 0.06
6 68 0.77
7 12 0.14
8 3 0.03
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:62830948 original size:37 final size:38
Alignment explanation
Indices: 62830892--62830977 Score: 111
Period size: 37 Copynumber: 2.3 Consensus size: 38
62830882 TATCAGAACT
* *
62830892 AGAATCAAAATGAGAAATCACAATCAGAATCAGGTGAC
1 AGAATCAGAATGAGAAATCACAATCAAAATCAGGTGAC
* * *
62830930 AGAATCAGAATTAG-AATCAGAATCAAAATTAGGTGAC
1 AGAATCAGAATGAGAAATCACAATCAAAATCAGGTGAC
*
62830967 GGAATCAGAAT
1 AGAATCAGAAT
62830978 CAGTATCAGG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
37 30 0.71
38 12 0.29
ACGTcount: A:0.49, C:0.13, G:0.20, T:0.19
Consensus pattern (38 bp):
AGAATCAGAATGAGAAATCACAATCAAAATCAGGTGAC
Found at i:62831005 original size:25 final size:25
Alignment explanation
Indices: 62830942--62831008 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
62830932 AATCAGAATT
* * *
62830942 AGAATCAGAATCAAAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
62830967 GGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
62830992 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
62831009 GGGAATGCAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.46, C:0.13, G:0.21, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:62831655 original size:27 final size:27
Alignment explanation
Indices: 62831623--62831742 Score: 141
Period size: 27 Copynumber: 4.4 Consensus size: 27
62831613 GGGGAAAAAT
* * * *
62831623 GGTAATTTTACCCCACAAGGGCATCTC
1 GGTAATTCTACCCAACAAGGGTATTTC
* *
62831650 GATAATTCTACCCAACAGGGGTATTTC
1 GGTAATTCTACCCAACAAGGGTATTTC
* *
62831677 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCAACAAGGGTATTTC
* *
62831704 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCAACAAGGGTATTTC
*
62831731 AGTAATTCTACC
1 GGTAATTCTACC
62831743 ATATAGGGGT
Statistics
Matches: 80, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (27 bp):
GGTAATTCTACCCAACAAGGGTATTTC
Found at i:62831725 original size:54 final size:54
Alignment explanation
Indices: 62831627--62831764 Score: 170
Period size: 54 Copynumber: 2.6 Consensus size: 54
62831617 AAAAATGGTA
* * * *
62831627 ATTT-TACCCCACAAGGGCATCTCGATAATTCTACCCAACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCAACAGGGGTATTTCAGT
* *
62831680 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCAACAGGGGTATTTCAGT
* * * * *
62831734 AATTCTACCATATAGGGGTATTTCAATAATT
1 ATTTCTACCCTACAAGGGTATTTCGATAATT
62831765 TTATAAATCG
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 4 0.06
54 68 0.94
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCAACAGGGGTATTTCAGT
Found at i:62831750 original size:27 final size:27
Alignment explanation
Indices: 62831652--62831764 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 27
62831642 GGCATCTCGA
*
62831652 TAATTCTACCCA-ACAGGGGTATTTCGG
1 TAATTCTA-CCATACAGGGGTATTTCAG
* * * *
62831679 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCATACAGGGGTATTTCAG
*
62831706 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCATACAGGGGTATTTCAG
* *
62831733 TAATTCTACCATATAGGGGTATTTCAA
1 TAATTCTACCATACAGGGGTATTTCAG
62831760 TAATT
1 TAATT
62831765 TTATAAATCG
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
26 2 0.03
27 74 0.97
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (27 bp):
TAATTCTACCATACAGGGGTATTTCAG
Found at i:62831790 original size:27 final size:27
Alignment explanation
Indices: 62831760--62831833 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 27
62831750 GGTATTTCAA
62831760 TAATTTTATAAATCGAGGGTAAAATAG
1 TAATTTTATAAATCGAGGGTAAAATAG
* * *** *
62831787 TAATTCTGTAAATCG-GGGTACTTTGG
1 TAATTTTATAAATCGAGGGTAAAATAG
* *
62831813 TAATTTTACAAGTCGAGGGTA
1 TAATTTTATAAATCGAGGGTA
62831834 TTCAGTAATT
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
26 18 0.50
27 18 0.50
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.35
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTAAAATAG
Found at i:62841668 original size:40 final size:40
Alignment explanation
Indices: 62841564--62841748 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
62841554 TATTCGAATG
* * * * *
62841564 ATATCCGGGCTAAGTCCAGAAGGCTTTTGTGTTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCT-AGTGACT
* * * * *
62841605 ATATCCGGACTAAGATCCAAAGGCATTTATGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
62841645 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
*
62841685 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
62841724 CATATCCGGGCTAAGACCCGAAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
62841749 CTTGTGCGAG
Statistics
Matches: 118, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 93 0.79
41 24 0.20
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:62841708 original size:80 final size:81
Alignment explanation
Indices: 62841564--62841748 Score: 232
Period size: 80 Copynumber: 2.3 Consensus size: 81
62841554 TATTCGAATG
* * * * *
62841564 ATATCCGGGCTAAGTCCAGAAGGCTTTTGTGTTAAGTGACTATATCCGGACTAAGATCCAAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCAAAGGC
*
62841629 ATTTATGCGAGTTA-C
66 ATTTATGCGAGTGATC
* * * *
62841644 TATATCCGGGCCAAAACCCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAG-TCCCGAAG
1 -ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGAT-CCAAAG
*
62841707 GCATTTATGCTAGTGATC
64 GCATTTATGCGAGTGATC
62841725 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
62841749 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 60 0.67
81 28 0.31
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCAAAGGC
ATTTATGCGAGTGATC
Found at i:62846864 original size:31 final size:31
Alignment explanation
Indices: 62846829--62846932 Score: 111
Period size: 31 Copynumber: 3.4 Consensus size: 31
62846819 GATAGAGGCA
* * *
62846829 TGATGGGATCACCTCGCAAGGTGGTGATGTG
1 TGATGGGATCACCTCACAAGATGGTGAGGTG
* * **
62846860 TGATGGGATTACCTCACGAGATGGTGAGGCA
1 TGATGGGATCACCTCACAAGATGGTGAGGTG
* * *
62846891 CGGTGGG-TCACCTCACAAGCTGGTGAGGTG
1 TGATGGGATCACCTCACAAGATGGTGAGGTG
62846921 TGATGGGATCAC
1 TGATGGGATCAC
62846933 TTAGTGAGAT
Statistics
Matches: 56, Mismatches: 16, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
30 23 0.41
31 33 0.59
ACGTcount: A:0.21, C:0.18, G:0.38, T:0.23
Consensus pattern (31 bp):
TGATGGGATCACCTCACAAGATGGTGAGGTG
Found at i:62846942 original size:61 final size:62
Alignment explanation
Indices: 62846823--62846962 Score: 176
Period size: 61 Copynumber: 2.3 Consensus size: 62
62846813 AGGTATGATA
* * * * *
62846823 GAGGCATGATGGGATCACCTCGCAAGGTGGTGATGTGTGATGGGATTACCTCACGAGATGGT
1 GAGGCATGGTGGGATCACCTCACAAGCTGGTGAGGTGTGATGGGATCACCTCACGAGATGGT
* * *
62846885 GAGGCACGGTGGG-TCACCTCACAAGCTGGTGAGGTGTGATGGGATCA-CTTAGTGAGATGGT
1 GAGGCATGGTGGGATCACCTCACAAGCTGGTGAGGTGTGATGGGATCACCTCA-CGAGATGGT
*
62846946 AAGGCATGGTGGGATCA
1 GAGGCATGGTGGGATCA
62846963 TTTAGCAAGA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
60 3 0.05
61 49 0.74
62 14 0.21
ACGTcount: A:0.23, C:0.16, G:0.39, T:0.23
Consensus pattern (62 bp):
GAGGCATGGTGGGATCACCTCACAAGCTGGTGAGGTGTGATGGGATCACCTCACGAGATGGT
Found at i:62846959 original size:31 final size:31
Alignment explanation
Indices: 62846924--62846986 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
62846914 TGAGGTGTGA
**
62846924 TGGGATCACTTAGTGAGATGGTAAGGCATGG
1 TGGGATCACTTAGCAAGATGGTAAGGCATGG
* **
62846955 TGGGATCATTTAGCAAGATGGTGTGGCATGG
1 TGGGATCACTTAGCAAGATGGTAAGGCATGG
62846986 T
1 T
62846987 TAGATTGCCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.24, C:0.10, G:0.38, T:0.29
Consensus pattern (31 bp):
TGGGATCACTTAGCAAGATGGTAAGGCATGG
Found at i:62849739 original size:48 final size:48
Alignment explanation
Indices: 62849636--62850045 Score: 655
Period size: 48 Copynumber: 8.6 Consensus size: 48
62849626 AGATAAATAT
*
62849636 ATATATGTGTGATATGTATATGTGGTAAAGCC-AATGGCTAATCTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * **
62849683 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGAAAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62849731 ATATATATGAGA-ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62849778 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62849826 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62849874 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62849922 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-A
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62849969 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
62850017 ATATGTATGAGATATGTATATGTGGTAAA
1 ATATATGTGTGATATGTATATGTGGTAAA
62850046 ATATATGTGT
Statistics
Matches: 341, Mismatches: 19, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
47 118 0.35
48 223 0.65
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:62849898 original size:96 final size:96
Alignment explanation
Indices: 62849636--62850523 Score: 948
Period size: 96 Copynumber: 9.5 Consensus size: 96
62849626 AGATAAATAT
* * *
62849636 ATATATGTGTGATATGTATATGTGGTAAAGCC-AATGGCTAATCTGAAATATATATGAGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
**
62849700 ATATGTGGTAAAGCCGAATGGCTAATGAAAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
62849731 ATATATATGAGA-ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
62849795 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
62849826 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
62849891 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62849922 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AATATATGTGTGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
* *
62849986 AGATGTGGTAAAGCCGAATGGCGAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * * * *
62850017 ATATGTATGAGATATGTATATGTGGT-AA----AAT--AT-ATGTG---TGATATGTAT-ATGTG
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-ATATGTGTGATAT-
* ** * * * *
62850070 GTA-AAGCCG-AATGGCTAATGTGAAATATATGTG--
64 GTATATGTGGTAAAGCCGAATG-G--CTA-ATGTGAA
* * * ** * * * ** * *
62850103 -TGATATGTAT-ATGTGGTA-AAGCCG-AATGGCTAATGAAATATATGTG--AGATATGTAT-AT
1 AT-ATATGTGTGATAT-GTATATGTGGTAAAGCCGAATG-GCTA-ATGTGAAATATATGTGTGAT
* * ** * * * *
62850161 GTGGTA-AAGCCG-AATGGCTAAT-G-TGAA----AT
62 AT-GTATATGTGGTAAAGCCGAATGGCT-AATGTGAA
* ** *
62850190 ATATGTGT--GATATGTATATGTGGTAAAGCCGAATGGCTAATGAAAAATATATGTGAGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
62850253 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
62850284 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
62850349 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
62850380 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
62850445 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62850476 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62850524 TGTTGTAACA
Statistics
Matches: 688, Mismatches: 64, Indels: 81
0.83 0.08 0.10
Matches are distributed among these distances:
84 8 0.01
85 22 0.03
86 25 0.04
87 29 0.04
88 13 0.02
89 12 0.02
90 7 0.01
91 1 0.00
92 3 0.00
94 66 0.10
95 152 0.22
96 350 0.51
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (96 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:62849948 original size:144 final size:144
Alignment explanation
Indices: 62849636--62850523 Score: 1200
Period size: 144 Copynumber: 6.3 Consensus size: 144
62849626 AGATAAATAT
* * * * *
62849636 ATATATGTGTGATATGTATATGTGGTAAAGCC-AATGGCTAATCTGAAATATATATGAGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
** *
62849700 ATATGTGGTAAAGCCGAATGGCTAATGAAAAATATATATGAGA-ATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGAGATATGTATATGTGGTAAAGCCGA
62849764 ATGGCTAATGTGAA
131 ATGGCTAATGTGAA
62849778 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
*
62849843 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGAGATATGTATATGTGGTAAAGCCGA
62849908 ATGGCTAATGTGAA
131 ATGGCTAATGTGAA
62849922 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AATATATGTGTGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
* * * *
62849986 AGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGT-AA----A
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGAGATATGTATATGTGGTAAAGCCGA
* **
62850046 AT--AT-ATGTGTG
131 ATGGCTAATGTGAA
* * * ** * * * * * ** * *
62850057 ATATGTAT-ATG-T-GGTA-AAGCCG-AATGGCTAATGTG-AAATAT-ATGTGTGATATGT-ATA
1 ATATATATGA-GATATGTATATGTGGTAAAGCCGAATG-GCTAATGTGAAATAT-ATGTGTGATA
*
62850114 TGTG------GTAAAGCCGAATGGCTAA--TGAAATATATGTGAGATATGTATATGTGGTAAAGC
63 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGAGATATGTATATGTGGTAAAGC
62850171 CGAATGGCTAATGTGAA
128 CGAATGGCTAATGTGAA
* * ** *
62850188 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGAAAAATATATGTGAGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
*
62850253 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGAGATATGTATATGTGGTAAAGCCGA
62850318 ATGGCTAATGTGAA
131 ATGGCTAATGTGAA
* *
62850332 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
*
62850397 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGAGATATGTATATGTGGTAAAGCCGA
62850462 ATGGCTAATGTGAA
131 ATGGCTAATGTGAA
62850476 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62850524 TGTTGTAACA
Statistics
Matches: 653, Mismatches: 63, Indels: 58
0.84 0.08 0.07
Matches are distributed among these distances:
123 28 0.04
124 2 0.00
125 17 0.03
128 3 0.00
130 1 0.00
131 32 0.05
132 10 0.02
133 6 0.01
134 6 0.01
135 28 0.04
136 10 0.02
138 3 0.00
142 50 0.08
143 138 0.21
144 319 0.49
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (144 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAA
Found at i:62850053 original size:31 final size:29
Alignment explanation
Indices: 62850015--62850074 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
62850005 GGCGAATGTG
* *
62850015 AAATATGTATGAGATATGTATATGTGGTA
1 AAATATATGTGAGATATGTATATGTGGTA
*
62850044 AAATATATGTGTGATATGTATATGTGGTA
1 AAATATATGTGAGATATGTATATGTGGTA
62850073 AA
1 AA
62850075 GCCGAATGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (29 bp):
AAATATATGTGAGATATGTATATGTGGTA
Found at i:62850055 original size:77 final size:77
Alignment explanation
Indices: 62849968--62850122 Score: 265
Period size: 77 Copynumber: 2.0 Consensus size: 77
62849958 GGCTAATGTG
*
62849968 AATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 AATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
62850033 TATATGTGGTAA
66 TATATGTGGTAA
* * * *
62850045 AATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 AATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
62850110 TATATGTGGTAA
66 TATATGTGGTAA
62850122 A
1 A
62850123 GCCGAATGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
77 73 1.00
ACGTcount: A:0.35, C:0.04, G:0.27, T:0.34
Consensus pattern (77 bp):
AATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATATATGAGATATG
TATATGTGGTAA
Found at i:62850097 original size:48 final size:48
Alignment explanation
Indices: 62850044--62850523 Score: 892
Period size: 48 Copynumber: 10.0 Consensus size: 48
62850034 ATATGTGGTA
62850044 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
62850092 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAA--TG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
62850138 AAATATATGTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
**
62850186 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGAA
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
62850234 AAATATATGTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
62850282 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
62850330 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
62850378 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
62850426 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
62850474 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
62850522 AA
1 AA
62850524 TGTTGTAACA
Statistics
Matches: 420, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
46 45 0.11
48 375 0.89
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
AAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:62850618 original size:37 final size:37
Alignment explanation
Indices: 62850568--62850653 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
62850558 GGAAATATAT
*
62850568 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
62850605 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
62850642 TCCGGGTAAGAC
1 TCCGGGTAAGAC
62850654 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:62851931 original size:79 final size:79
Alignment explanation
Indices: 62851826--62852070 Score: 395
Period size: 79 Copynumber: 3.1 Consensus size: 79
62851816 GAGAATTGAG
*
62851826 AGTGATGTATCC-GACTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTATCC-GACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
62851889 AAGAGCATTCGTGCT
66 AAGAGCATTC-TGCT
62851904 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
62851969 AAGAGCATTCTGCT
66 AAGAGCATTCTGCT
* * * *
62851983 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
*
62852048 AAGAGCAATCATGCT
66 AAGAGCATTC-TGCT
*
62852063 GGTGATGT
1 AGTGATGT
62852071 GTATTCGGGC
Statistics
Matches: 157, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
78 12 0.08
79 112 0.71
80 33 0.21
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCTGCT
Found at i:62851932 original size:40 final size:40
Alignment explanation
Indices: 62851826--62852070 Score: 397
Period size: 40 Copynumber: 6.2 Consensus size: 40
62851816 GAGAATTGAG
*
62851826 AGTGATGTATCC-GACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
62851865 AGTGATGTATCC-GACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
62851904 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
62851944 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC-TGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
62851983 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
62852023 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
62852063 GGTGATGT
1 AGTGATGT
62852071 GTATTCGGGC
Statistics
Matches: 197, Mismatches: 7, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
39 88 0.45
40 109 0.55
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:62855570 original size:48 final size:48
Alignment explanation
Indices: 62855501--62856363 Score: 1620
Period size: 48 Copynumber: 18.0 Consensus size: 48
62855491 AGATAAATAT
62855501 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62855549 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62855597 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62855645 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62855693 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62855741 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62855789 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62855837 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-A
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62855884 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62855932 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62855980 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62856028 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
62856076 ATATATGTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62856124 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62856172 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62856220 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62856268 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62856316 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62856364 TGTTGTAACA
Statistics
Matches: 798, Mismatches: 16, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 0.06
48 751 0.94
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:62856458 original size:37 final size:37
Alignment explanation
Indices: 62856408--62856493 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
62856398 GGAAATATAT
*
62856408 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
62856445 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
62856482 TCCGGGTAAGAC
1 TCCGGGTAAGAC
62856494 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:62857712 original size:40 final size:40
Alignment explanation
Indices: 62857668--62857915 Score: 397
Period size: 40 Copynumber: 6.2 Consensus size: 40
62857658 GAGAATTGAG
* *
62857668 AGTGATGTATCCAGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
62857708 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
62857748 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
62857788 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCCTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
62857828 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
62857868 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
62857908 GGTGATGT
1 AGTGATGT
62857916 GTATTCGGGC
Statistics
Matches: 196, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 196 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:62861526 original size:48 final size:48
Alignment explanation
Indices: 62861349--62862295 Score: 1650
Period size: 48 Copynumber: 20.0 Consensus size: 48
62861339 AGATAAATAT
62861349 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62861395 ATA-ATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT-TGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62861441 ATATATATGAGATA-GTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62861488 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62861536 A-ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
62861583 ATATATGTGTGATATGTACATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
62861631 ATATATGTGTGATATGTATATGTGGTAAATCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62861679 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG--
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62861725 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
62861773 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62861821 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62861869 ATATATGT-TGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62861916 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAA--TGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62861962 ATATA--TGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62862008 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62862056 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62862104 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62862152 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62862200 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
62862248 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
62862296 TGTTGTAACA
Statistics
Matches: 864, Mismatches: 24, Indels: 24
0.95 0.03 0.03
Matches are distributed among these distances:
44 37 0.04
45 37 0.04
46 96 0.11
47 117 0.14
48 577 0.67
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:62862389 original size:37 final size:37
Alignment explanation
Indices: 62862339--62862424 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
62862329 TGGAATATAT
*
62862339 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
62862376 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
62862413 TCCGGGTAAGAC
1 TCCGGGTAAGAC
62862425 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:62871469 original size:43 final size:43
Alignment explanation
Indices: 62871422--62871505 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
62871412 TTAAGGATGT
* * * *
62871422 TGGCATCGATATGTGATTA-AGTGTAAGACCTTGTTTGGGACAG
1 TGGCATCAATATGTGAGTACA-TGTAAGACCATGTCTGGGACAG
62871465 TGGCATCAATATGTGAGTACATGTAAGACCATGTCTGGGAC
1 TGGCATCAATATGTGAGTACATGTAAGACCATGTCTGGGAC
62871506 GTTGGAATTG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (43 bp):
TGGCATCAATATGTGAGTACATGTAAGACCATGTCTGGGACAG
Found at i:62879448 original size:101 final size:99
Alignment explanation
Indices: 62879321--62879510 Score: 263
Period size: 101 Copynumber: 1.9 Consensus size: 99
62879311 CGGGATATAT
* ** *
62879321 ATAGCTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTTGATCACT
1 ATAGCTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACACGTACCTGATAA--TTGATCACA
*
62879386 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAG
64 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAG
* * * * * *
62879422 ATAGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCTTATAATTGGTCGCATG
1 ATAGCTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACACGTACCTGATAATTGATCACATG
62879487 TGTAGTACTAAGTGCAAGCTACTA
66 TGTAGTACTAAGTGCAAGCTACTA
62879511 TGCGTGCCAG
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 31 0.40
101 47 0.60
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (99 bp):
ATAGCTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACACGTACCTGATAATTGATCACATG
TGTAGTACTAAGTGCAAGCTACTACGTGTATCAG
Found at i:62879461 original size:50 final size:50
Alignment explanation
Indices: 62879321--62879510 Score: 220
Period size: 50 Copynumber: 3.8 Consensus size: 50
62879311 CGGGATATAT
* * * *
62879321 ATAGCTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTG
1 ATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTG
* * * * * *
62879371 ATAACTTTGATCACTTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAG
1 AT-AGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTG
* * *
62879422 ATAGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCTT
1 ATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTG
* * *
62879472 ATAATT-GGTCGCATGTGTAGTACTAAGTGCAAGCTACTA
1 ATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
62879511 TGCGTGCCAG
Statistics
Matches: 117, Mismatches: 22, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
49 30 0.26
50 47 0.40
51 40 0.34
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (50 bp):
ATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTG
Found at i:62886120 original size:26 final size:27
Alignment explanation
Indices: 62886086--62886136 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
62886076 AGTCAAATTA
*
62886086 ACCCTAGGGGTATAATGGTCATTTTAC
1 ACCCTAGGGGTATAATGGTAATTTTAC
62886113 ACCC-AGGGGTATAATGGTAATTTT
1 ACCCTAGGGGTATAATGGTAATTTT
62886137 CCATACTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (27 bp):
ACCCTAGGGGTATAATGGTAATTTTAC
Found at i:62890104 original size:27 final size:26
Alignment explanation
Indices: 62890057--62890107 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
62890047 CGAGACTGCT
*
62890057 AGATATTGTGACGAAGTCACCAGAAA
1 AGATATTGTGACGAAGCCACCAGAAA
* *
62890083 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
62890108 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAA
Found at i:62896532 original size:21 final size:21
Alignment explanation
Indices: 62896508--62896551 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
62896498 ATTTTCGAAA
62896508 ACCTTTATTCAGTGTTTCTTT
1 ACCTTTATTCAGTGTTTCTTT
62896529 ACCTTTATTCAGTGTTTCTTT
1 ACCTTTATTCAGTGTTTCTTT
62896550 AC
1 AC
62896552 AAGTTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.16, C:0.20, G:0.09, T:0.55
Consensus pattern (21 bp):
ACCTTTATTCAGTGTTTCTTT
Found at i:62897384 original size:27 final size:26
Alignment explanation
Indices: 62897336--62897395 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
62897326 GCGAGGCTGC
*
62897336 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
62897363 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
62897389 CAGATAT
1 CAGATAT
62897396 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:62903452 original size:27 final size:27
Alignment explanation
Indices: 62903412--62903499 Score: 140
Period size: 27 Copynumber: 3.2 Consensus size: 27
62903402 GTGAGATAGT
62903412 CACCAGATACAGATATTTGTGGCAGAGC
1 CACCAGA-ACAGATATTTGTGGCAGAGC
*
62903440 CACCAGAATAGATATTTGTGGCAGAGC
1 CACCAGAACAGATATTTGTGGCAGAGC
* *
62903467 CACCAGAACAGATAATTGTGGCATAGC
1 CACCAGAACAGATATTTGTGGCAGAGC
62903494 CACCAG
1 CACCAG
62903500 GATGTTCCTC
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
27 49 0.88
28 7 0.12
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGAGC
Found at i:62904775 original size:23 final size:25
Alignment explanation
Indices: 62904737--62904782 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
62904727 GCAAAGAAGA
*
62904737 AGAAAAGAGAATAAGAGATGAGAGG
1 AGAAAAGAGAATAAGAGAAGAGAGG
62904762 AGAAAAGA-AA-AAGAGAAGAGA
1 AGAAAAGAGAATAAGAGAAGAGA
62904783 ATGGTCAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 2 0.10
25 8 0.40
ACGTcount: A:0.63, C:0.00, G:0.33, T:0.04
Consensus pattern (25 bp):
AGAAAAGAGAATAAGAGAAGAGAGG
Found at i:62908575 original size:22 final size:23
Alignment explanation
Indices: 62908553--62908604 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
62908543 ATGTTTTTAC
62908553 TTTTATTTTAT-TTTAAGACTACT
1 TTTTATTTT-TCTTTAAGACTACT
62908576 TTTTATTTTTCTTTAAG-CTTA-T
1 TTTTATTTTTCTTTAAGAC-TACT
62908598 TTTTATT
1 TTTTATT
62908605 AGGTTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.21, C:0.08, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTTATTTTTCTTTAAGACTACT
Found at i:62910808 original size:35 final size:35
Alignment explanation
Indices: 62910769--62910841 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
62910759 ACACATTCTT
* *
62910769 TATTCTCGTCAGATCACTCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAACATA
62910804 TATTCTCGTCAGATCAATCTCACATAAATAACATA
1 TATTCTCGTCAGATCAATCTCACATAAATAACATA
62910839 TAT
1 TAT
62910842 ATCACATACC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAACATA
Found at i:62911779 original size:58 final size:56
Alignment explanation
Indices: 62911680--62911799 Score: 145
Period size: 58 Copynumber: 2.1 Consensus size: 56
62911670 ATATGAAAAA
62911680 GAAAAAAAGAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCG-AATGTACTAAG
1 GAAAAAAAGAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAAT-TACTAAG
* ***
62911736 GAAAGAAAAGAAAAAAATTTGTTCATCCTT-TCTCATCTTCTTGGCCGAAATTACTAAG
1 GAAA-AAAAGAAAAAAA-ATGTTCATCCTTCTC-CATAGGCTTGGCCGAAATTACTAAG
*
62911794 GGAAAA
1 GAAAAA
62911800 GGGGGAGGAT
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
56 4 0.07
57 16 0.29
58 32 0.58
59 3 0.05
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.26
Consensus pattern (56 bp):
GAAAAAAAGAAAAAAAATGTTCATCCTTCTCCATAGGCTTGGCCGAAATTACTAAG
Found at i:62913053 original size:40 final size:40
Alignment explanation
Indices: 62912987--62913153 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
62912977 AAATTGAATG
* * *
62912987 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
62913026 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
62913066 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
62913106 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
62913146 ATATCCGG
1 ATATCCGG
62913154 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:62921112 original size:39 final size:40
Alignment explanation
Indices: 62920989--62921154 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
62920979 AAATTGAATG
* * *
62920989 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
62921028 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
62921068 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
62921107 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
62921147 ATATCCGG
1 ATATCCGG
62921155 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:62921121 original size:79 final size:79
Alignment explanation
Indices: 62920989--62921138 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
62920979 AAATTGAATG
*
62920989 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
62921054 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
62921068 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
62921131 ATTTGTGC
64 AATTGTGC
62921139 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:62924133 original size:27 final size:28
Alignment explanation
Indices: 62924102--62924184 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 28
62924092 CTATTTCANG
62924102 GGTATTTTAGTAATTCTACCTACAGA-A
1 GGTATTTTAGTAATTCTACCTACAGAGA
** * *
62924129 GGTATTTCGGTAATTCTACCTTACATAGG
1 GGTATTTTAGTAATTCTACC-TACAGAGA
*
62924158 GGTATTTTAGTAATGCTAGCCTACAGA
1 GGTATTTTAGTAATTCTA-CCTACAGA
62924185 TATGAGATTC
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
27 18 0.40
28 5 0.11
29 20 0.44
30 2 0.04
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (28 bp):
GGTATTTTAGTAATTCTACCTACAGAGA
Found at i:62927752 original size:43 final size:43
Alignment explanation
Indices: 62927698--62927827 Score: 147
Period size: 43 Copynumber: 3.0 Consensus size: 43
62927688 ATATCGTACA
* * *
62927698 ATGCCAATGTCCCAGACGTGGTCTTACA-TGTACTCACATATTG
1 ATGCCACTGTCCCAGACGTGGTCTTACACT-TAATCACATATCG
**
62927741 ATGCCACTGTCCCAGACAAGGTCTTACACTTAATCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACTTAATCACATATCG
* ** *
62927784 ATGCCAAC-GTCCCAGATGTGGTCTTACACGAAAACACATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACTTAATCACATATCG
62927827 A
1 A
62927828 AAATCCAATG
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
43 71 0.96
44 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACTTAATCACATATCG
Found at i:62935616 original size:43 final size:43
Alignment explanation
Indices: 62935560--62935689 Score: 127
Period size: 43 Copynumber: 3.0 Consensus size: 43
62935550 ATATCGTACA
** *
62935560 ATGCCAACATCCCAGATGTGGTCTTACATGTAGTCACATATTG
1 ATGCCAATGTCCCAGATGTGGTCTTACATGTAATCACATATTG
* * *** *
62935603 ATGCCACTGTCCCAAACAAGGTCTTACACT-TAATCACATATCG
1 ATGCCAATGTCCCAGATGTGGTCTTACA-TGTAATCACATATTG
** * *
62935646 ATGCCAATGTCTTAGATGTGGTCTTACATGAAAACACATATTG
1 ATGCCAATGTCCCAGATGTGGTCTTACATGTAATCACATATTG
62935689 A
1 A
62935690 AAATCCTATG
Statistics
Matches: 66, Mismatches: 19, Indels: 4
0.74 0.21 0.04
Matches are distributed among these distances:
42 1 0.02
43 64 0.97
44 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGATGTGGTCTTACATGTAATCACATATTG
Found at i:62950159 original size:3 final size:3
Alignment explanation
Indices: 62950151--62950189 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
62950141 TAAAAACTAA
* *
62950151 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC CAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
62950190 GAAGATTTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:62958197 original size:38 final size:38
Alignment explanation
Indices: 62958135--62958316 Score: 238
Period size: 38 Copynumber: 4.8 Consensus size: 38
62958125 CATAAAGTTA
*
62958135 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGTCGGTGAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAT
* * * * * *
62958173 ATTCTGGCTTTATGCCTTGTAGGCTTTATGCCAGTGAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAT
* *
62958211 ATTCAGGCTTTGTGCCTAGCAGACTTTGTGCCGGTGAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAT
* * *
62958249 ATTCGGGCTTTGTGCCTAGTAGGCTTCGTGCCAGTGAT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAT
* *
62958287 ATTTGGGCTCTGTGCCTAGCAGGCTTTGTG
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTG
62958317 TTGGTGTAAT
Statistics
Matches: 121, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 121 1.00
ACGTcount: A:0.13, C:0.20, G:0.30, T:0.37
Consensus pattern (38 bp):
ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAT
Found at i:62958271 original size:76 final size:76
Alignment explanation
Indices: 62958135--62958316 Score: 274
Period size: 76 Copynumber: 2.4 Consensus size: 76
62958125 CATAAAGTTA
* * * *
62958135 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGTCGGTGATATTCTGGCTTTATGCCTTGTAGGCTTT
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGATATTCGGGCTTTATGCCTAGTAGGCTTC
62958200 ATGCCAGTGAT
66 ATGCCAGTGAT
* * *
62958211 ATTCAGGCTTTGTGCCTAGCAGACTTTGTGCCGGTGATATTCGGGCTTTGTGCCTAGTAGGCTTC
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGATATTCGGGCTTTATGCCTAGTAGGCTTC
*
62958276 GTGCCAGTGAT
66 ATGCCAGTGAT
* *
62958287 ATTTGGGCTCTGTGCCTAGCAGGCTTTGTG
1 ATTCGGGCTTTGTGCCTAGCAGGCTTTGTG
62958317 TTGGTGTAAT
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
76 94 1.00
ACGTcount: A:0.13, C:0.20, G:0.30, T:0.37
Consensus pattern (76 bp):
ATTCGGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGATATTCGGGCTTTATGCCTAGTAGGCTTC
ATGCCAGTGAT
Found at i:62962543 original size:40 final size:40
Alignment explanation
Indices: 62962511--62962862 Score: 605
Period size: 40 Copynumber: 8.8 Consensus size: 40
62962501 CCAGCATGAT
* * * *
62962511 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
62962551 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
62962591 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
62962631 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
62962671 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
62962711 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
62962751 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCAGGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
62962791 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
62962831 TGCTCTTCGAGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
62962863 CTCAATTCTC
Statistics
Matches: 298, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 298 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:62968910 original size:30 final size:30
Alignment explanation
Indices: 62968855--62969014 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
62968845 ATAGTGAATC
62968855 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
62968884 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
62968914 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
62968943 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
62968971 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
62969001 CGCACACTTAGTGC
1 CGCACACTTAGTGC
62969015 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:62968947 original size:59 final size:57
Alignment explanation
Indices: 62968855--62969014 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
62968845 ATAGTGAATC
*
62968855 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
62968914 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
62968971 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
62969015 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:62971447 original size:30 final size:31
Alignment explanation
Indices: 62971395--62971457 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 31
62971385 TTTAACTCAG
62971395 CTAAAATTGAATCATCATTAGACAAAGTTAA
1 CTAAAATTGAATCATCATTAGACAAAGTTAA
62971426 CTAAAATTGAATCAT-ATTAGACAAAGTTAA
1 CTAAAATTGAATCATCATTAGACAAAGTTAA
62971456 CT
1 CT
62971458 GTGTGTTCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 17 0.53
31 15 0.47
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.30
Consensus pattern (31 bp):
CTAAAATTGAATCATCATTAGACAAAGTTAA
Found at i:62972146 original size:2 final size:2
Alignment explanation
Indices: 62972139--62972168 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
62972129 TGGAAACCCT
62972139 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
62972169 AGAAACTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:62974410 original size:27 final size:27
Alignment explanation
Indices: 62974391--62974479 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
62974381 AAGGGCATTT
62974391 TAGTCATTTTACCACATAAGGGAAAAA
1 TAGTCATTTTACCACATAAGGGAAAAA
62974418 TAGTCATTTTACCACATAA-GGATAAAA
1 TAGTCATTTTACCACATAAGGGA-AAAA
* * * *
62974445 CAATCATTTTATCAC-TTAGGGAAAAA
1 TAGTCATTTTACCACATAAGGGAAAAA
62974471 TAGTCATTT
1 TAGTCATTT
62974480 CATCAAATTG
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
26 16 0.30
27 38 0.70
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (27 bp):
TAGTCATTTTACCACATAAGGGAAAAA
Found at i:62979487 original size:49 final size:49
Alignment explanation
Indices: 62979434--62979944 Score: 763
Period size: 49 Copynumber: 10.6 Consensus size: 49
62979424 TTTTATGCGT
* * *
62979434 TGAATGTGAATGTGTATATATATGAGATAAGGCCGAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
62979483 TGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
* *
62979530 TGGATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
* *
62979579 TGGATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
* *
62979628 TGGATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
62979677 TGAATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
* *
62979724 TGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATGGCCGATGTAA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
*
62979773 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
* * *
62979822 TGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
* * * * *
62979869 TGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGTGA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
*
62979916 TGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TGAATGTGAAAGTGTATATATATGTGATAAG
62979945 TCCCGAAGGG
Statistics
Matches: 434, Mismatches: 20, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
47 182 0.42
48 7 0.02
49 245 0.56
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (49 bp):
TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
Found at i:62979618 original size:145 final size:144
Alignment explanation
Indices: 62979434--62979944 Score: 769
Period size: 145 Copynumber: 3.5 Consensus size: 144
62979424 TTTTATGCGT
* *
62979434 TGAATGTGAATGTGTATATATATGAGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
62979499 TATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTGTGTATATATGTGATAAGGCC
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTGTATATATGTGATAAGGCC
62979564 TAATGGCCGATGTGA
130 TAATGGCCGATGTGA
* * * *
62979579 TGGATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTGTG
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA--GTG
*
62979644 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTATATATATGTGATAAGGC
64 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGC
62979708 CTAATGGCCGATGTGA
129 CTAATGGCCGATGTGA
* * *
62979724 TGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--
*
62979789 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG-AAGGTGTATATATGTGATAAGGC
64 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGC
* *
62979853 CGAATGGCCAATGTGA
129 CTAATGGCCGATGTGA
* * * * *
62979869 TGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
*
62979932 TAAATGTGATAAG
66 TATATGTGATAAG
62979945 TCCCGAAGGG
Statistics
Matches: 335, Mismatches: 26, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
141 14 0.04
143 42 0.13
144 2 0.01
145 231 0.69
147 46 0.14
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (144 bp):
TGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGA
Found at i:62982472 original size:2 final size:2
Alignment explanation
Indices: 62982465--62982494 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
62982455 GCTACCAACC
62982465 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
62982495 GTATGCATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:62984231 original size:40 final size:40
Alignment explanation
Indices: 62984194--62984379 Score: 173
Period size: 40 Copynumber: 4.7 Consensus size: 40
62984184 GCTACTCGTT
*
62984194 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
62984234 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* ***
62984274 CAAATGCCTTC-GGATCTTAGTTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAACTCGCA
* * ** * * *
62984314 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
62984355 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
62984380 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:62984373 original size:80 final size:80
Alignment explanation
Indices: 62984194--62984378 Score: 225
Period size: 80 Copynumber: 2.3 Consensus size: 80
62984184 GCTACTCGTT
*
62984194 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
62984259 ATTTAGTAACTCGCA
66 ATATAGTAACTAGCA
** * **
62984274 CAAATGCCTTC-GGATCTTAGTTCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
*
62984336 CGGATATAGTCACTTAGCA
63 CGGATATAGTAAC-TAGCA
62984355 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
62984379 ACATCATTCG
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
79 6 0.07
80 70 0.79
81 13 0.15
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCA
Found at i:62985094 original size:2 final size:2
Alignment explanation
Indices: 62985087--62985114 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
62985077 ATGTGCAAAC
62985087 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62985115 GTGCAAGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62995294 original size:18 final size:18
Alignment explanation
Indices: 62995273--62995309 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
62995263 ATTCATGGTG
*
62995273 TTTTGAAAACATATATCC
1 TTTTGAAAAAATATATCC
*
62995291 TTTTGAAAAAATGTATCC
1 TTTTGAAAAAATATATCC
62995309 T
1 T
62995310 AAAGCTAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.41
Consensus pattern (18 bp):
TTTTGAAAAAATATATCC
Found at i:62998353 original size:31 final size:32
Alignment explanation
Indices: 62998299--62998362 Score: 103
Period size: 31 Copynumber: 2.0 Consensus size: 32
62998289 CTTCGCAAAG
*
62998299 TGTGACATCGTTGAAAAACCCTTTTCCATATT
1 TGTGACATCGTTGAAAAAACCTTTTCCATATT
*
62998331 TGTGACATCGTT-AAAAAACCTTTTTCATATT
1 TGTGACATCGTTGAAAAAACCTTTTCCATATT
62998362 T
1 T
62998363 ATCTTTATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 18 0.60
32 12 0.40
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.41
Consensus pattern (32 bp):
TGTGACATCGTTGAAAAAACCTTTTCCATATT
Found at i:62999312 original size:27 final size:27
Alignment explanation
Indices: 62999276--62999435 Score: 160
Period size: 27 Copynumber: 5.9 Consensus size: 27
62999266 AAACATATAT
*
62999276 CACAT-AGGGCAAAACAGTCAATTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
** * ***
62999302 CATGTAGGGGCATTTCAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
62999329 CACATAAAGGCAAAATAGTCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
62999356 CACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
62999383 CATATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
62999410 CGCCAATTAGGGCAAAACAATCATTT
1 C-AC-ATAAGGGCAAAACAGTCATTT
62999436 CATCAAATTG
Statistics
Matches: 107, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
26 3 0.03
27 84 0.79
29 20 0.19
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:63006854 original size:79 final size:80
Alignment explanation
Indices: 63006763--63006945 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 80
63006753 ACGACTCGCT
**
63006763 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGT-ACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATC-TAACCC
* *
63006825 GGGTTTAGTAACTT-GCA
63 GGATATAGTAACTTAGCA
* **
63006842 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCTAGTCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCTAACCCGGA
*
63006906 TATAGTCACTTAGCA
66 TATAGTAACTTAGCA
63006921 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63006946 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
78 38 0.42
79 53 0.58
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCTAACCCGGA
TATAGTAACTTAGCA
Found at i:63006905 original size:39 final size:39
Alignment explanation
Indices: 63006756--63006945 Score: 163
Period size: 39 Copynumber: 4.8 Consensus size: 39
63006746 GGATATAACG
* * **
63006756 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGT-
1 ACTCGCACGAATGCCTTC-GGACTTAGCCCGGATT-TAGTA
* *
63006795 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAATGCCTTC-GGACTTAGCCCGGATTTAGTA
* * * *
63006835 ACTTGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTA
1 ACTCGCACGAATGCCTTCGGACTTAGCCCGGATTTAGTA
* * *
63006874 ACTCGCACGAATGCCTTCGGA-TCTAGTCCGGATATAGTC
1 ACTCGCACGAATGCCTTCGGACT-TAGCCCGGATTTAGTA
* *
63006913 ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAATGCCTTC-GGACTTAGCCCGGA
63006946 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
38 1 0.01
39 88 0.71
40 34 0.27
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACGAATGCCTTCGGACTTAGCCCGGATTTAGTA
Found at i:63014774 original size:39 final size:39
Alignment explanation
Indices: 63014731--63014919 Score: 174
Period size: 39 Copynumber: 4.8 Consensus size: 39
63014721 GGATATAACG
*
63014731 ACTCGCTCAAATGCCTTCGGGAC-AAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAGCCCGGTT-TAGTA
*
63014770 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGAC-TAAGCCC-GGTTTAGTA
* * *
63014810 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAGCCCGG-TTTAGTA
* * * *
63014849 ACTCGCACGAATGCCTTC-GGATCT-AGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTAAGCCCGG-TTTAGTA
* *
63014888 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTAAGCCCGG
63014920 ACATCATTCA
Statistics
Matches: 125, Mismatches: 15, Indels: 19
0.79 0.09 0.12
Matches are distributed among these distances:
38 6 0.05
39 68 0.54
40 45 0.36
41 6 0.05
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTAAGCCCGGTTTAGTA
Found at i:63014829 original size:79 final size:80
Alignment explanation
Indices: 63014738--63014920 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 80
63014728 ACGACTCGCT
*
63014738 CAAATGCCTTCGGGAC-AAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATC-TAACCC
* *
63014800 GGGTTTAGTAACTT-GCA
63 GGATATAGTAACTTAGCA
* **
63014817 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCTAGTCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCTAACCCGGA
*
63014881 TATAGTCACTTAGCA
66 TATAGTAACTTAGCA
63014896 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63014921 CATCATTCAA
Statistics
Matches: 92, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
78 28 0.30
79 62 0.67
80 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCTAACCCGGA
TATAGTAACTTAGCA
Found at i:63020340 original size:93 final size:93
Alignment explanation
Indices: 63020228--63020398 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
63020218 GCCCATAAGT
* *
63020228 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63020293 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
63020321 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63020386 CGAGTTCGGATGC
66 CGAGTTCGGATGC
63020399 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:63020414 original size:46 final size:46
Alignment explanation
Indices: 63020220--63020400 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
63020210 TGTAACCCGC
* * *
63020220 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
63020266 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
63020316 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
63020359 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
63020401 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:63026406 original size:20 final size:20
Alignment explanation
Indices: 63026378--63026420 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
63026368 AATATAAAGA
* *
63026378 AAAACTTATAATTATTTTTT
1 AAAACTTATAATGAATTTTT
* *
63026398 AAAATTTATTATGAATTTTT
1 AAAACTTATAATGAATTTTT
63026418 AAA
1 AAA
63026421 GTCAAAACAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
AAAACTTATAATGAATTTTT
Found at i:63027337 original size:46 final size:47
Alignment explanation
Indices: 63027284--63027453 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 47
63027274 AACCCGCCCC
* *
63027284 TAAGTGAACTCGGACTCAAATCAACGAGCTCGAG-CATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCATCCA
* *
63027330 TAAGTGAACTCGGACTCAACTCAACGAGTTCGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGA-GAC-A-TTCGCATCCA
* *
63027377 TCA-CGAACTCGGACTCAACTCAACGAGTTCG-GACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCATCCA
*
63027422 TAAGTGAACTCGGACTCAACTTAACGAGTTCG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCG
63027454 GATGCTAACC
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 2 0.02
46 84 0.79
47 3 0.03
48 2 0.02
49 4 0.04
50 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCATCCA
Found at i:63027403 original size:92 final size:93
Alignment explanation
Indices: 63027289--63027458 Score: 290
Period size: 92 Copynumber: 1.8 Consensus size: 93
63027279 GCCCCTAAGT
63027289 GAACTCGGACTCAAATCAACGAGCTC-GAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAAATCAACGAGCTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63027353 ACGAGTTC-GATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
63027381 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63027446 CGAGTTCGGATGC
66 CGAGTTCGGATGC
63027459 TAACCATCCT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
92 66 0.90
93 7 0.10
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:63030314 original size:39 final size:38
Alignment explanation
Indices: 63030261--63030398 Score: 143
Period size: 39 Copynumber: 3.5 Consensus size: 38
63030251 GGATATAACG
* * *
63030261 ACTCGCTCAAATGCCTTCGGGACGAAGCCGGTTATAGTG
1 ACTCGCACAAATGCCTTCGGGACTAAGCCGGTT-TAGTA
* *
63030300 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGAC-TAAGCC-GGTTTAGTA
* * *
63030340 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAG-CCGG-TTTAGTA
*
63030379 ACTCGCACGAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
63030399 ATCCTAGTCC
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
38 4 0.05
39 48 0.58
40 27 0.33
41 4 0.05
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (38 bp):
ACTCGCACAAATGCCTTCGGGACTAAGCCGGTTTAGTA
Found at i:63030435 original size:79 final size:80
Alignment explanation
Indices: 63030300--63030451 Score: 193
Period size: 79 Copynumber: 1.9 Consensus size: 80
63030290 GGTTATAGTG
* * * * *
63030300 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCACAAATGCC-TTCGGGCTT
1 ACTCGCACGAATGCCTTCGGGACCTAACCCGGATATAGTAACTTGCACAAATGCCTTTAGGACTT
63030364 AGCCCGGATTTATTA
66 AGCCCGGATTTATTA
** *
63030379 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTTAGGAC
1 ACTCGCACGAATGCCTTCGGGA-CCTAACCCGGATATAGTAACTT-GCACAAATGCCTTTAGGAC
63030442 TTAGCCCGGA
64 TTAGCCCGGA
63030452 CATCATTCGA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
78 3 0.05
79 37 0.60
80 22 0.35
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACCTAACCCGGATATAGTAACTTGCACAAATGCCTTTAGGACTT
AGCCCGGATTTATTA
Found at i:63039033 original size:40 final size:40
Alignment explanation
Indices: 63038963--63039100 Score: 217
Period size: 40 Copynumber: 3.5 Consensus size: 40
63038953 CAACCAAGTA
* * *
63038963 CCTTTGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
63039002 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63039042 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63039082 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63039101 TTATCATCCG
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 13 0.14
40 80 0.86
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63046900 original size:39 final size:38
Alignment explanation
Indices: 63046832--63046940 Score: 159
Period size: 39 Copynumber: 2.8 Consensus size: 38
63046822 AAACCAAGTA
*
63046832 CCTT-GGGATTTAGCCGGATATAGCTACTCGCTC-AATG
1 CCTTCGGGACTTAGCCGGATATAG-TACTCGCTCAAATG
*
63046869 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGT-ACTCGCTCAAATG
63046909 CCTTCGGGACTTAGCCGGATATAGTACTCGCT
1 CCTTCGGGACTTAGCCGGATATAGTACTCGCT
63046941 TAGCACGGAT
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
37 4 0.06
38 15 0.23
39 28 0.43
40 18 0.28
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (38 bp):
CCTTCGGGACTTAGCCGGATATAGTACTCGCTCAAATG
Found at i:63046944 original size:21 final size:23
Alignment explanation
Indices: 63046918--63046962 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
63046908 GCCTTCGGGA
63046918 CTTAGC-CGGATATAGT-ACTCG
1 CTTAGCACGGATATAGTAACTCG
63046939 CTTAGCACGGATATAGTAACTCG
1 CTTAGCACGGATATAGTAACTCG
63046962 C
1 C
63046963 ACAAATGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 6 0.27
22 10 0.45
23 6 0.27
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (23 bp):
CTTAGCACGGATATAGTAACTCG
Found at i:63046973 original size:61 final size:63
Alignment explanation
Indices: 63046878--63047002 Score: 227
Period size: 61 Copynumber: 2.0 Consensus size: 63
63046868 GCCTTCGGGA
*
63046878 CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG-CCGGATATAGT-ACTCG
1 CTTAGCACGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCG
63046939 CTTAGCACGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCG
1 CTTAGCACGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCG
63047002 C
1 C
63047003 ACAAATGCCT
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
61 44 0.72
62 11 0.18
63 6 0.10
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (63 bp):
CTTAGCACGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCG
Found at i:63046994 original size:40 final size:40
Alignment explanation
Indices: 63046939--63047068 Score: 251
Period size: 40 Copynumber: 3.2 Consensus size: 40
63046929 ATAGTACTCG
*
63046939 CTTAGCACGGATATAGTAACTCGCACAAATGCCTTCGGGA
1 CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA
63046979 CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA
1 CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA
63047019 CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA
1 CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA
63047059 CTTAGCCCGG
1 CTTAGCCCGG
63047069 TTATCATCCG
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA
Found at i:63047020 original size:101 final size:101
Alignment explanation
Indices: 63046841--63047042 Score: 347
Period size: 101 Copynumber: 2.0 Consensus size: 101
63046831 ACCTTGGGAT
*
63046841 TTAGCCGGATATAGCTACTCGCTCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAA
1 TTAGCCGGATATAGCTACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAA
63046906 ATGCCTTCGGGACTTAG-CCGGATATAGT-ACTCGC
66 ATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
63046940 TTAGCACGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 TTAGC-CGGATATAGCT-ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
63047004 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
63 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
63047043 ACAAATGCCT
Statistics
Matches: 97, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
99 6 0.06
100 16 0.16
101 58 0.60
102 11 0.11
103 6 0.06
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (101 bp):
TTAGCCGGATATAGCTACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAA
ATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
Found at i:63051794 original size:21 final size:21
Alignment explanation
Indices: 63051770--63051813 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
63051760 ATTCTTTTGA
63051770 GATGTGTTCTTTCATTAGTAT
1 GATGTGTTCTTTCATTAGTAT
63051791 GATGTGTTCTTTCATTAGTAT
1 GATGTGTTCTTTCATTAGTAT
63051812 GA
1 GA
63051814 ACTAAAACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.20, C:0.09, G:0.20, T:0.50
Consensus pattern (21 bp):
GATGTGTTCTTTCATTAGTAT
Found at i:63058426 original size:47 final size:47
Alignment explanation
Indices: 63058372--63058829 Score: 607
Period size: 47 Copynumber: 9.7 Consensus size: 47
63058362 TTAGGATTTT
* * *
63058372 ATGTGATGAATGTGAATGAGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
**
63058419 ATGTGATGAATGTGAACA-TACATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
*
63058466 ATGTGATGAATGTGAACA-TGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
* * * * **
63058513 ATGTGATGAATGTGAGCA-TGCATATGTGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGA-AAGTGTATATATGTGATAAGGCCGAATGGCCA
* *
63058560 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* *
63058607 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATTGCCC
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * * *
63058654 ATGTGATGAATGTGGAAGCGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
*
63058701 ATGTGATGAATGTGAAAGTGTATATAAGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * * * *
63058748 ATGTGATGAATTTGAAAGTGTATATATGTGGTAGGGCCGAGTGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * *
63058795 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
63058830 TTCCGAAGGG
Statistics
Matches: 365, Mismatches: 43, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
46 1 0.00
47 364 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:63058472 original size:22 final size:22
Alignment explanation
Indices: 63058444--63058519 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
63058434 ACATACATAT
63058444 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
63058466 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
63058490 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
63058513 ATGTGAT
1 ATGTGAT
63058520 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:63063099 original size:40 final size:40
Alignment explanation
Indices: 63063034--63063277 Score: 303
Period size: 40 Copynumber: 6.1 Consensus size: 40
63063024 CGGAATACAA
* ** * * *
63063034 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
63063074 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
63063114 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
63063154 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
63063194 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
** * * *
63063234 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
63063274 CCGG
1 CCGG
63063278 GTATCATTCA
Statistics
Matches: 182, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 181 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:63063465 original size:123 final size:123
Alignment explanation
Indices: 63063246--63063584 Score: 588
Period size: 123 Copynumber: 2.8 Consensus size: 123
63063236 GGATATAATT
* * * * * * *
63063246 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
63063311 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
63063369 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
63063434 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
* *
63063492 AGTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
63063557 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
63063585 CACATAATTC
Statistics
Matches: 206, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 206 1.00
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:63063547 original size:64 final size:64
Alignment explanation
Indices: 63063356--63063547 Score: 139
Period size: 64 Copynumber: 3.1 Consensus size: 64
63063346 TAAGGCTCGA
*
63063356 ACACAAACATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCAT
1 ACACAAACATATCAATAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCAT
* * * * * *** * *** * **
63063420 ACACACATATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTC
1 ACACAAACATATCAATAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTC
*
63063477 AA
63 AT
*
63063479 ACACAAACATATCAGTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCAT
1 ACACAAACATATCAATAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCAT
63063543 ACACA
1 ACACA
63063548 CATATGTCAA
Statistics
Matches: 83, Mismatches: 34, Indels: 22
0.60 0.24 0.16
Matches are distributed among these distances:
58 1 0.01
59 24 0.29
60 7 0.08
61 7 0.08
62 7 0.08
63 7 0.08
64 29 0.35
65 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (64 bp):
ACACAAACATATCAATAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCAT
Found at i:63068121 original size:40 final size:40
Alignment explanation
Indices: 63068057--63068135 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
63068047 ATTTTACAAT
* *
63068057 GATATGAAATTATTACAAACAGGGTGAATATCCCAAAGTG
1 GATATGAAATTATCACAAACAGGGTAAATATCCCAAAGTG
* * *
63068097 GATATGAAATTATCATAGATAGGGTAAATATCCCAAAGT
1 GATATGAAATTATCACAAACAGGGTAAATATCCCAAAGT
63068136 TCATAACAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.27
Consensus pattern (40 bp):
GATATGAAATTATCACAAACAGGGTAAATATCCCAAAGTG
Found at i:63069256 original size:2 final size:2
Alignment explanation
Indices: 63069249--63069278 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
63069239 TATTCTTGAC
63069249 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
63069279 CCAAAACATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:63075702 original size:90 final size:93
Alignment explanation
Indices: 63075600--63075776 Score: 229
Period size: 92 Copynumber: 1.9 Consensus size: 93
63075590 AGTATAGACA
* * * *
63075600 TGCAGTATAAACTGCCAGATCAGATC-GTGGTACGTAGCATAGC-AACG-ACATGCGGTATAGTG
1 TGCAGTATAAACTGCCAGATCAG-TCAATGGTACGTAGCACAGCTAACGTACATACGGTACAGTG
63075662 CAATGCGGTAAATC-ACTATACCGATAGGT
65 CAATGCGGT-AATCTACTATACCGATAGGT
* * *
63075691 TGCAGTA-AAACTGCCAGTTCAGTCAATGGTACGTAGCGCAGCTAACGTACATACGGTACAGTGT
1 TGCAGTATAAACTGCCAGATCAGTCAATGGTACGTAGCACAGCTAACGTACATACGGTACAGTGC
*
63075755 AATGCGGTGATCTACTATACCG
66 AATGCGGTAATCTACTATACCG
63075777 TTATCAGTAA
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
89 2 0.03
90 28 0.38
91 14 0.19
92 30 0.41
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.24
Consensus pattern (93 bp):
TGCAGTATAAACTGCCAGATCAGTCAATGGTACGTAGCACAGCTAACGTACATACGGTACAGTGC
AATGCGGTAATCTACTATACCGATAGGT
Done.