Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 211 of 335
Found at i:63080951 original size:42 final size:42
Alignment explanation
Indices: 63080874--63080953 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
63080864 CTGAGTTAGG
* *
63080874 TAAAGATGAGAAATTTGAGGCAGATGATGGTCAGGAACCGGA
1 TAAAGATGAGAAATTTGAGGCAGATGATAGCCAGGAACCGGA
* * *
63080916 TAAAGTTGAGAATTTTGAGGCAGATGGTAGCCAGGAAC
1 TAAAGATGAGAAATTTGAGGCAGATGATAGCCAGGAAC
63080954 TGCCTACTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.36, C:0.10, G:0.33, T:0.21
Consensus pattern (42 bp):
TAAAGATGAGAAATTTGAGGCAGATGATAGCCAGGAACCGGA
Found at i:63082678 original size:39 final size:39
Alignment explanation
Indices: 63082624--63082702 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
63082614 CATTTGTTCG
*
63082624 TGACAGACATGTTTGGGGTTAAGTTATATATTGATGGAT
1 TGACAGACATGTTTGGGGTTAAATTATATATTGATGGAT
63082663 TGACAGACATGTTTGGGGTTAAATTATATATTGATGGAT
1 TGACAGACATGTTTGGGGTTAAATTATATATTGATGGAT
63082702 T
1 T
63082703 TACTTTGCAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.29, C:0.05, G:0.27, T:0.39
Consensus pattern (39 bp):
TGACAGACATGTTTGGGGTTAAATTATATATTGATGGAT
Found at i:63088452 original size:21 final size:23
Alignment explanation
Indices: 63088428--63088491 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 23
63088418 TTTTATATAT
*
63088428 TTTTGATTTTTTTAAAA-A-AAA
1 TTTTGATTTTTTAAAAATACAAA
*
63088449 TTTTAATTTTTTAAAAATACAAA
1 TTTTGATTTTTTAAAAATACAAA
* *
63088472 TTTTGGAATTTTTATAAATA
1 TTTT-GATTTTTTAAAAATA
63088492 TTTTGAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 15 0.43
22 1 0.03
23 7 0.20
24 12 0.34
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (23 bp):
TTTTGATTTTTTAAAAATACAAA
Found at i:63088458 original size:19 final size:20
Alignment explanation
Indices: 63088436--63088527 Score: 64
Period size: 20 Copynumber: 4.5 Consensus size: 20
63088426 ATTTTTGATT
63088436 TTTTTAAAAAAAATTTT-AA
1 TTTTTAAAAAAAATTTTGAA
63088455 TTTTTTAAAAATACAAATTTTGGAA
1 -TTTTT-AAAA-A-AAATTTT-GAA
* *
63088480 TTTTT-ATAAATATTTTGAA
1 TTTTTAAAAAAAATTTTGAA
** *
63088499 -TTTTAAAAATTATTTTCAA
1 TTTTTAAAAAAAATTTTGAA
63088518 TTTTTGAAAA
1 TTTTT-AAAA
63088528 TTATTTTGAT
Statistics
Matches: 59, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
18 4 0.07
19 14 0.24
20 15 0.25
21 9 0.15
22 3 0.05
23 7 0.12
24 5 0.08
25 2 0.03
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (20 bp):
TTTTTAAAAAAAATTTTGAA
Found at i:63088466 original size:17 final size:17
Alignment explanation
Indices: 63088372--63088466 Score: 50
Period size: 17 Copynumber: 5.3 Consensus size: 17
63088362 TTTAGAATTT
*
63088372 AAAATTATT-ATTTTATA
1 AAAATT-TTAATTTTTTA
* **
63088389 AAATTTTTAAAATTTT-
1 AAAATTTTAATTTTTTA
63088405 AAAATTTTAACTTTTTTA
1 AAAATTTTAA-TTTTTTA
* * *
63088423 TATATTTTTGATTTTTTTAAAA
1 -AAAATTTT-AATTTTTT---A
63088445 AAAATTTTAATTTTTTA
1 AAAATTTTAATTTTTTA
63088462 AAAAT
1 AAAAT
63088467 ACAAATTTTG
Statistics
Matches: 57, Mismatches: 13, Indels: 16
0.66 0.15 0.19
Matches are distributed among these distances:
16 11 0.19
17 19 0.33
19 12 0.21
20 8 0.14
21 6 0.11
22 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (17 bp):
AAAATTTTAATTTTTTA
Found at i:63088502 original size:18 final size:19
Alignment explanation
Indices: 63088471--63088536 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 19
63088461 AAAAATACAA
*
63088471 ATTTTGGAATTTTTATAAA-T
1 ATTTT-GAA-TTTTAAAAATT
63088491 ATTTTGAATTTTAAAAATT
1 ATTTTGAATTTTAAAAATT
* *
63088510 ATTTTCAATTTTTGAAAATT
1 ATTTTGAA-TTTTAAAAATT
63088530 ATTTTGA
1 ATTTTGA
63088537 TTATTTTGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
18 8 0.20
19 11 0.28
20 21 0.52
ACGTcount: A:0.36, C:0.02, G:0.08, T:0.55
Consensus pattern (19 bp):
ATTTTGAATTTTAAAAATT
Found at i:63088527 original size:20 final size:19
Alignment explanation
Indices: 63088478--63088534 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
63088468 CAAATTTTGG
*
63088478 AATTTTTATAAA-TATTTTG
1 AATTTTTA-AAATTATTTTC
*
63088497 AATTTTAAAAATTATTTTC
1 AATTTTTAAAATTATTTTC
63088516 AATTTTTGAAAATTATTTT
1 AATTTTT-AAAATTATTTT
63088535 GATTATTTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 3 0.09
19 19 0.58
20 11 0.33
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.56
Consensus pattern (19 bp):
AATTTTTAAAATTATTTTC
Found at i:63089775 original size:60 final size:59
Alignment explanation
Indices: 63089700--63089842 Score: 171
Period size: 59 Copynumber: 2.4 Consensus size: 59
63089690 TTTCAAGGAA
* *
63089700 TAACTTGGACAAAAAAACAATTCAAGCCTTAATGTA-AGAACAATTGTCAAGTTCAACGCC
1 TAACTTGGACTAAAAAA-AATTCAAGCCTCAATGTAGA-AACAATTGTCAAGTTCAACGCC
* * * * * **
63089760 TAACCTGGACTAAAAAAAGTTCAAGCCTCAATGTGGAAATAATTGTCAAGTTTAGGGCC
1 TAACTTGGACTAAAAAAAATTCAAGCCTCAATGTAGAAACAATTGTCAAGTTCAACGCC
63089819 TAACTTGGACTAATAAAAAATTCA
1 TAACTTGGACTAA-AAAAAATTCA
63089843 GGCCCCAAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
59 45 0.64
60 25 0.36
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.25
Consensus pattern (59 bp):
TAACTTGGACTAAAAAAAATTCAAGCCTCAATGTAGAAACAATTGTCAAGTTCAACGCC
Found at i:63090414 original size:19 final size:18
Alignment explanation
Indices: 63090387--63090433 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
63090377 AATTATATAT
63090387 TTTTAAATTTTTTTGAAA
1 TTTTAAATTTTTTTGAAA
*
63090405 TTTTATAATTTTTTTTAAA
1 TTTTA-AATTTTTTTGAAA
*
63090424 -TATAAATTTT
1 TTTTAAATTTT
63090434 GAAATTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 6 0.23
18 8 0.31
19 12 0.46
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTAAATTTTTTTGAAA
Found at i:63090420 original size:44 final size:44
Alignment explanation
Indices: 63090372--63090461 Score: 119
Period size: 44 Copynumber: 2.0 Consensus size: 44
63090362 AAATGTTTAA
* * * * *
63090372 TTTTTAATTATATATTTTTAAATTTTTTTGAA-ATTTTATAATTT
1 TTTTTAAATATAAATTTTGAAATTTTTATAAATATTTTA-AATTT
63090416 TTTTTAAATATAAATTTTGAAATTTTTATAAATATTTTAAATTT
1 TTTTTAAATATAAATTTTGAAATTTTTATAAATATTTTAAATTT
63090460 TT
1 TT
63090462 GAAAATTATG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 34 0.85
45 6 0.15
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (44 bp):
TTTTTAAATATAAATTTTGAAATTTTTATAAATATTTTAAATTT
Found at i:63090439 original size:25 final size:24
Alignment explanation
Indices: 63090402--63090450 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
63090392 AATTTTTTTG
*
63090402 AAATTTTATAATTTTTTTTAAATAT
1 AAATTTTATAA-TTTTTATAAATAT
63090427 AAATTTTGA-AATTTTTATAAATAT
1 AAATTTT-ATAATTTTTATAAATAT
63090451 TTTAAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 12 0.55
25 9 0.41
26 1 0.05
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
AAATTTTATAATTTTTATAAATAT
Found at i:63090447 original size:18 final size:19
Alignment explanation
Indices: 63090424--63090461 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
63090414 TTTTTTTAAA
63090424 TATAAAT-TTTGAAATTTT
1 TATAAATATTTGAAATTTT
*
63090442 TATAAATATTTTAAATTTT
1 TATAAATATTTGAAATTTT
63090461 T
1 T
63090462 GAAAATTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (19 bp):
TATAAATATTTGAAATTTT
Found at i:63090467 original size:19 final size:20
Alignment explanation
Indices: 63090387--63090481 Score: 61
Period size: 20 Copynumber: 4.6 Consensus size: 20
63090377 AATTATATAT
*
63090387 TTTTAAATTTTTTTGAAATT-
1 TTTTAAATTTTTAT-AAATTA
* * *
63090407 TTATAATTTTTTTTAAATATAAA
1 TTTTAAATTTTTATAAAT-T--A
63090430 TTTTGAAATTTTTATAAA-TA
1 TTTT-AAATTTTTATAAATTA
63090450 TTTTAAATTTTTGA-AAATTA
1 TTTTAAATTTTT-ATAAATTA
* *
63090470 TGTTGAATTTTT
1 TTTTAAATTTTT
63090482 TTTGTAATTT
Statistics
Matches: 61, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
19 15 0.25
20 31 0.51
22 1 0.02
23 3 0.05
24 11 0.18
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTTAAATTTTTATAAATTA
Found at i:63090653 original size:14 final size:15
Alignment explanation
Indices: 63090633--63090672 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
63090623 TAACTCGAAT
63090633 AATTCAAATAACTCG
1 AATTCAAATAACTCG
*
63090648 -ATTCAATTAACTCG
1 AATTCAAATAACTCG
63090662 AAATTCAAATA
1 -AATTCAAATA
63090673 TTTTTTTCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 13 0.62
16 8 0.38
ACGTcount: A:0.47, C:0.17, G:0.05, T:0.30
Consensus pattern (15 bp):
AATTCAAATAACTCG
Found at i:63094177 original size:54 final size:54
Alignment explanation
Indices: 63094086--63094194 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 54
63094076 CCTTCTTGAC
* * *
63094086 AGTAGTCTCCCCCTGAGTAGTAGCTTCCCCTTTAACAATGGTGTTTTTTGGAAT
1 AGTAGTCTCCCCCTAAATAGTAGCTTCCCCTTGAACAATGGTGTTTTTTGGAAT
* * *
63094140 AGTAGTCTCCCCGTAAATAGTAGTTTCTCCTTGAACAATGGTGTTTTTTGGAAT
1 AGTAGTCTCCCCCTAAATAGTAGCTTCCCCTTGAACAATGGTGTTTTTTGGAAT
63094194 A
1 A
63094195 AGGTTTTCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (54 bp):
AGTAGTCTCCCCCTAAATAGTAGCTTCCCCTTGAACAATGGTGTTTTTTGGAAT
Found at i:63095860 original size:42 final size:42
Alignment explanation
Indices: 63095801--63095989 Score: 179
Period size: 41 Copynumber: 4.5 Consensus size: 42
63095791 TCAGTGATAT
* * *
63095801 TCGGGCTTTATTACCTAGTAGGCTTTATGCTGGTGTATTATA
1 TCGGGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
* *
63095843 TCGGGCTTTATTGCCTAGCAAGCTTTATGCCGGTGTGTTATATTA
1 TCGGGCTTTATTGCCTAGCAGGCTTTATGCCGGTGT-AT-TA-TA
* * * *
63095888 TTGGTCTTTATTGCCTAGTAGGCTTTATGCTGGTGTATTATA
1 TCGGGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
** * *
63095930 TAAGGC-CTATTGCCTAGCAGG-TTCTGTGCCGGTGTATTATA
1 TCGGGCTTTATTGCCTAGCAGGCTT-TATGCCGGTGTATTATA
*
63095971 -CTAGGCTTTA-TGCCTAGCA
1 TC-GGGCTTTATTGCCTAGCA
63095990 AAGTTTATGT
Statistics
Matches: 121, Mismatches: 20, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
40 2 0.02
41 41 0.34
42 39 0.32
43 3 0.02
44 3 0.02
45 33 0.27
ACGTcount: A:0.19, C:0.17, G:0.24, T:0.40
Consensus pattern (42 bp):
TCGGGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
Found at i:63095913 original size:45 final size:44
Alignment explanation
Indices: 63095801--63095930 Score: 165
Period size: 45 Copynumber: 3.0 Consensus size: 44
63095791 TCAGTGATAT
* *
63095801 TCGGGCTTTATTACCTAGTAGGCTTTATGCTGGTGTAT-TA-TA
1 TCGGGCTTTATTGCCTAGTAGGCTTTATGCTGGTGTTTATATTA
* * *
63095843 TCGGGCTTTATTGCCTAGCAAGCTTTATGCCGGTGTGTTATATTA
1 TCGGGCTTTATTGCCTAGTAGGCTTTATGCTGGTGT-TTATATTA
* *
63095888 TTGGTCTTTATTGCCTAGTAGGCTTTATGCTGGTGTATTATAT
1 TCGGGCTTTATTGCCTAGTAGGCTTTATGCTGGTGT-TTATAT
63095931 AAGGCCTATT
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
42 32 0.43
43 1 0.01
44 2 0.03
45 39 0.53
ACGTcount: A:0.18, C:0.15, G:0.24, T:0.44
Consensus pattern (44 bp):
TCGGGCTTTATTGCCTAGTAGGCTTTATGCTGGTGTTTATATTA
Found at i:63096894 original size:6 final size:6
Alignment explanation
Indices: 63096883--63097051 Score: 152
Period size: 6 Copynumber: 27.8 Consensus size: 6
63096873 AACCAAAATG
*
63096883 AGAATC AGAATC AGAATC AGAATC A-ATATT AGTAA-C AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC AGAATC
* *
63096931 AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGTAA-C AGAATC
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC AGAATC
* * * *
63096980 AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC AAAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
*
63097028 ACGTGAT- AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
63097052 GTGAATGCAA
Statistics
Matches: 134, Mismatches: 15, Indels: 28
0.76 0.08 0.16
Matches are distributed among these distances:
5 10 0.07
6 113 0.84
7 7 0.05
8 4 0.03
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:63097007 original size:85 final size:85
Alignment explanation
Indices: 63096888--63097051 Score: 292
Period size: 85 Copynumber: 1.9 Consensus size: 85
63096878 AAATGAGAAT
* *
63096888 CAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGACAGA
1 CAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAAAATTACGTGACAGA
63096953 ATCAGAATCAGAATCAGTAA
66 ATCAGAATCAGAATCAGTAA
* *
63096973 CAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAGAATCAAAATTACGTGATAGA
1 CAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAAAATTACGTGACAGA
63097038 ATCAGAATCAGAAT
66 ATCAGAATCAGAAT
63097052 GTGAATGCAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 75 1.00
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (85 bp):
CAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAAAATTACGTGACAGA
ATCAGAATCAGAATCAGTAA
Found at i:63097234 original size:27 final size:27
Alignment explanation
Indices: 63097174--63097226 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
63097164 GGCTACTAGA
* * *
63097174 ACAGATATCGTGACAGAGTCACCAGAT
1 ACAGATATTGTGGCAGAGCCACCAGAT
63097201 ACAGATATTGTGGCAGAGCCACCAGA
1 ACAGATATTGTGGCAGAGCCACCAGA
63097227 ATCGGATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
ACAGATATTGTGGCAGAGCCACCAGAT
Found at i:63097239 original size:27 final size:27
Alignment explanation
Indices: 63097174--63097242 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
63097164 GGCTACTAGA
* *
63097174 ACAGAT-ATCGTGACAGAGTCACCAGAT
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
*
63097201 ACAGATATTGTGGCAGAGCCACCAGA-
1 ACAGATAATGTGGCAGAGCCACCAGAT
*
63097227 ATCGGATAATGTGGCA
1 A-CAGATAATGTGGCA
63097243 AACCCACCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 1 0.03
27 33 0.94
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:63097632 original size:27 final size:26
Alignment explanation
Indices: 63097553--63097635 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
63097543 TCGATCGGTC
* * *
63097553 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
63097579 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
63097606 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
63097633 AAC
1 AAC
63097636 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:63097865 original size:27 final size:26
Alignment explanation
Indices: 63097835--63098029 Score: 147
Period size: 27 Copynumber: 7.2 Consensus size: 26
63097825 GGGCAAAATG
* *
63097835 GTAATTTTACCCCACAAGGGTATCTC
1 GTAATTCTACCCCACAAGGGTATTTC
* * *
63097861 AGTAATTCTACCCTACAGGGGTATTTTG
1 -GTAATTCTACCCCACAAGGGTA-TTTC
*
63097889 GTATTTCTACCCCACAAGGGTATTTC
1 GTAATTCTACCCCACAAGGGTATTTC
* * *
63097915 GATAATTCTACCCTACAGGGGTATTTTG
1 G-TAATTCTACCCCACAAGGGTA-TTTC
* * * *
63097943 GTAATTCTATCCTATAAGGGTATTTTA
1 GTAATTCTACCCCACAAGGGTA-TTTC
* * * *
63097970 GTAATTCTACCCTATAGGGGTATTTTG
1 GTAATTCTACCCCACAAGGGTA-TTTC
* * *
63097997 GAAATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCCACAAGGGTATTTC
63098023 AGTAATT
1 -GTAATT
63098030 TCACAATCAA
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.05
27 127 0.91
28 6 0.04
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (26 bp):
GTAATTCTACCCCACAAGGGTATTTC
Found at i:63097881 original size:54 final size:54
Alignment explanation
Indices: 63097833--63098029 Score: 263
Period size: 54 Copynumber: 3.6 Consensus size: 54
63097823 AGGGGCAAAA
*
63097833 TGGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTTTACCCCACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
63097887 TGGT-ATTTCTACCCCACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTT-TACCCCACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTT
* * * * * *
63097941 TGGTAATTCTATCCTATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTT
1 TGGTAATTTTACCCCACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
* * * *
63097995 TGGAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 TGGTAATTTTACCCCACAAGGGTATTTCAGTAATT
63098030 TCACAATCAA
Statistics
Matches: 127, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
53 5 0.04
54 118 0.93
55 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
TGGTAATTTTACCCCACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
Found at i:63098028 original size:81 final size:81
Alignment explanation
Indices: 63097836--63098029 Score: 237
Period size: 81 Copynumber: 2.4 Consensus size: 81
63097826 GGCAAAATGG
* * * * * * *
63097836 TAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
63097901 CACAAGGGTATTTCGA
66 CACAAGGGTATTTCGA
** * *
63097917 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTTAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
* * * *
63097982 TATAGGGGTATTTTGGA
66 CACAAGGGTA-TTTCGA
63097999 -AATTCTACCCTACAGGGGTATTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTCAGTAATT
63098030 TCACAATCAA
Statistics
Matches: 95, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 90 0.95
82 5 0.05
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
CACAAGGGTATTTCGA
Found at i:63098064 original size:27 final size:27
Alignment explanation
Indices: 63098034--63098540 Score: 632
Period size: 27 Copynumber: 18.8 Consensus size: 27
63098024 GTAATTTCAC
* *
63098034 AATCAAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
63098061 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
63098088 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
63098115 AATCAAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
63098142 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
63098169 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
63098196 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
63098223 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
63098250 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** *
63098277 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
63098304 AA-CTGAGGGTAAAACTGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
63098331 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
63098358 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
63098385 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
63098412 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
63098439 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
63098466 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
63098493 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
63098520 AATCGAGGGTAAAAC-GTAATT
1 AATCGAGGGTAAAACGGTAATT
63098541 TTACAAACCA
Statistics
Matches: 418, Mismatches: 50, Indels: 25
0.85 0.10 0.05
Matches are distributed among these distances:
26 12 0.03
27 400 0.96
28 6 0.01
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:63098592 original size:26 final size:27
Alignment explanation
Indices: 63098535--63098593 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
63098525 AGGGTAAAAC
**
63098535 GTAATTTTACAAACCAGGGCTATTTTG
1 GTAATTTTACAAACCAGGGCTATTTCA
**
63098562 GTAATTTTACAAGTCAGGGC-ATTTCA
1 GTAATTTTACAAACCAGGGCTATTTCA
63098588 GTAATT
1 GTAATT
63098594 GGTAAACTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.37
Consensus pattern (27 bp):
GTAATTTTACAAACCAGGGCTATTTCA
Found at i:63106118 original size:36 final size:37
Alignment explanation
Indices: 63106053--63106129 Score: 147
Period size: 36 Copynumber: 2.1 Consensus size: 37
63106043 TATAAAAGAA
63106053 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
63106090 GTCTTACCCGGTCATAA-CTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
63106126 GTCT
1 GTCT
63106130 CGCCCGGAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 23 0.57
37 17 0.43
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:63106292 original size:49 final size:49
Alignment explanation
Indices: 63106232--63106354 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
63106222 CATATATTTT
*
63106232 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
63106281 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
63106330 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
63106355 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:63109499 original size:40 final size:40
Alignment explanation
Indices: 63109455--63109552 Score: 110
Period size: 40 Copynumber: 2.4 Consensus size: 40
63109445 TCGATTGTTC
* * **
63109455 TCGGGACATAGCCCGG-TTATAGTGA-TTTGCACAATTGCCT
1 TCGGGA-ATAGCCCGGATT-TAGTAACTTAGCACAAACGCCT
63109495 TCGGGAATTAGCCCGGATTTAGTAACTTAGCACAAACGCCT
1 TCGGGAA-TAGCCCGGATTTAGTAACTTAGCACAAACGCCT
*
63109536 TCGGGATTAGCCCGGAT
1 TCGGGAATAGCCCGGAT
63109553 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
39 1 0.02
40 29 0.58
41 20 0.40
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
TCGGGAATAGCCCGGATTTAGTAACTTAGCACAAACGCCT
Found at i:63110072 original size:29 final size:29
Alignment explanation
Indices: 63110035--63110286 Score: 425
Period size: 29 Copynumber: 8.7 Consensus size: 29
63110025 TGTTGAAAAA
* *
63110035 CTCGTACACACAGTGCCTCAATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
63110064 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
63110093 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
63110122 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
63110151 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
63110180 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
63110209 CTCGCACACACAGTGCCTCGATTACTGAT
1 CTCGCACACACAGTGCCTCGATTACTGAT
* * *
63110238 CTCGCACACATAGTGCCTCGGTTAACGGAAT
1 CTCGCACACACAGTGCCTCGATT-ACTG-AT
*
63110269 -TTGCACACACAGTGCCTC
1 CTCGCACACACAGTGCCTC
63110287 TAATCATTCG
Statistics
Matches: 214, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
29 193 0.90
30 19 0.09
31 2 0.01
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.24
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCGATTACTGAT
Found at i:63112349 original size:37 final size:37
Alignment explanation
Indices: 63112299--63112376 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
63112289 TATAAAAGAA
63112299 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
63112336 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
63112373 GTCT
1 GTCT
63112377 CGCCCGGAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:63112539 original size:49 final size:49
Alignment explanation
Indices: 63112479--63112601 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
63112469 CATATATTTT
*
63112479 ACATTGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
63112528 ACATCGGCCATTAGGCCTCATCACATATACGTACACTTTCACATTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
*
63112577 ACATCGGCCATTAGGCCTTATCACA
1 ACATCGGCCATTAGGCCTCATCACA
63112602 CATATATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.33, G:0.11, T:0.27
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACC
Found at i:63117343 original size:42 final size:42
Alignment explanation
Indices: 63117283--63117472 Score: 201
Period size: 41 Copynumber: 4.5 Consensus size: 42
63117273 TTAGTGATAT
* * *
63117283 TCGGGCTTTTATTACCTAGTAGGCTTTATGTCGGTGTATTATA
1 TCGGGC-TTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
*
63117326 TCGGGCTTTATTGCCTAGTAGGCTTTATGCCAGTGTGT-TATATTA
1 TCGGGCTTTATTGCCTAGCAGGCTTTATGCC-G-GTGTAT-TA-TA
63117371 TCGGGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
1 TCGGGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
** * *
63117413 TAAGGC-CTATTGCCTAGCAGG-TTCTGTGCCGGTGTATTATA
1 TCGGGCTTTATTGCCTAGCAGGCTT-TATGCCGGTGTATTATA
*
63117454 -CTAGGCTTTA-TGCCTAGCA
1 TC-GGGCTTTATTGCCTAGCA
63117473 AAGTTTATGT
Statistics
Matches: 130, Mismatches: 9, Indels: 18
0.83 0.06 0.11
Matches are distributed among these distances:
40 2 0.02
41 43 0.33
42 31 0.24
43 14 0.11
44 8 0.06
45 32 0.25
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.39
Consensus pattern (42 bp):
TCGGGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
Found at i:63117388 original size:45 final size:45
Alignment explanation
Indices: 63117279--63117414 Score: 174
Period size: 45 Copynumber: 3.1 Consensus size: 45
63117269 TGTATTAGTG
* *
63117279 ATAT-TCGGGCTTTTATTACCTAGTAGGCTTTATGTCG-GTG-TAT
1 ATATATCGGGC-TTTATTGCCTAGTAGGCTTTATGCCGTGTGTTAT
63117322 -TATATCGGGCTTTATTGCCTAGTAGGCTTTATGCCAGTGTGTTAT
1 ATATATCGGGCTTTATTGCCTAGTAGGCTTTATGCC-GTGTGTTAT
* *
63117367 AT-TATCGGGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
1 ATATATCGGGCTTTATTGCCTAGTAGGCTTTATGCC-GTGTGTTAT
63117412 ATA
1 ATA
63117415 AGGCCTATTG
Statistics
Matches: 82, Mismatches: 5, Indels: 9
0.85 0.05 0.09
Matches are distributed among these distances:
42 26 0.32
43 7 0.09
44 3 0.04
45 45 0.55
46 1 0.01
ACGTcount: A:0.19, C:0.15, G:0.24, T:0.42
Consensus pattern (45 bp):
ATATATCGGGCTTTATTGCCTAGTAGGCTTTATGCCGTGTGTTAT
Found at i:63119220 original size:15 final size:15
Alignment explanation
Indices: 63119197--63119228 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
63119187 CTATGAACTA
63119197 GTACCATGTACCATT
1 GTACCATGTACCATT
*
63119212 GTACTATGTACCATT
1 GTACCATGTACCATT
63119227 GT
1 GT
63119229 CAATTGTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (15 bp):
GTACCATGTACCATT
Found at i:63119234 original size:22 final size:21
Alignment explanation
Indices: 63119193--63119236 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
63119183 CATTCTATGA
*
63119193 ACTAGTACCATGTACCATTGT
1 ACTAGTACCATGTACAATTGT
63119214 ACTATGTACCATTGT-CAATTGT
1 ACTA-GTACCA-TGTACAATTGT
63119236 A
1 A
63119237 AAAAGGTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 4 0.20
22 13 0.65
23 3 0.15
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (21 bp):
ACTAGTACCATGTACAATTGT
Found at i:63123753 original size:44 final size:41
Alignment explanation
Indices: 63123658--63123757 Score: 114
Period size: 40 Copynumber: 2.4 Consensus size: 41
63123648 CGACTATGCT
* * *
63123658 TGGCACTAAGTGTGCGGTTTAATATAGCTTCGGCAATATAA
1 TGGCACTAAGTGTGCGATCTAATATAGCTTCGGCAATAAAA
*
63123699 -GGCACCAAGTGTGCGATACTAACT-TAGCTTCGGCTAACTAAAA
1 TGGCACTAAGTGTGCGAT-CTAA-TATAGCTTCGGC-AA-TAAAA
63123742 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63123758 GAATCATTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
40 15 0.31
41 13 0.27
42 3 0.06
43 4 0.08
44 14 0.29
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGATCTAATATAGCTTCGGCAATAAAA
Found at i:63134451 original size:3 final size:3
Alignment explanation
Indices: 63134443--63134478 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
63134433 TTAAAAACTA
* *
63134443 AAT AAT AAT AAT AAT AAT AAT AAT AAC CAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
63134479 GAAGATTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:63138211 original size:40 final size:39
Alignment explanation
Indices: 63138046--63138229 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
63138036 AAATTGAATG
* * *
63138046 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
63138086 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
63138126 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
63138166 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
63138205 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
63138230 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:63138254 original size:80 final size:81
Alignment explanation
Indices: 63138086--63138274 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
63138076 GCTGGAAATT
* * * *
63138086 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
63138151 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
63138167 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
63138230 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
63138246 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
63138275 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:63145515 original size:40 final size:39
Alignment explanation
Indices: 63145350--63145533 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
63145340 AAATTGAATG
* * *
63145350 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
63145390 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
63145430 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
63145470 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
63145509 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
63145534 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:63145558 original size:80 final size:81
Alignment explanation
Indices: 63145390--63145578 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
63145380 GCTGGAAATT
* * * *
63145390 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
63145455 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
63145471 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
63145534 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
63145550 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
63145579 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:63152101 original size:32 final size:32
Alignment explanation
Indices: 63152049--63152110 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
63152039 TTTAACCGGA
*
63152049 TATAACGACTCGCTCAAATGCCTTCGGGACGT
1 TATAACGACTCGCACAAATGCCTTCGGGACGT
* *
63152081 TATAGCGACTCGCACGAATGCCTTCGGGAC
1 TATAACGACTCGCACAAATGCCTTCGGGAC
63152111 TTAACCCGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (32 bp):
TATAACGACTCGCACAAATGCCTTCGGGACGT
Found at i:63152238 original size:40 final size:39
Alignment explanation
Indices: 63152092--63152238 Score: 163
Period size: 40 Copynumber: 3.7 Consensus size: 39
63152082 ATAGCGACTC
* *
63152092 GCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTT
1 GCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTT
* *
63152132 GCACAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTC
1 GCACAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTT
* * * *
63152170 GCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTT
1 GCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT
*
63152210 AGCACAAAGCCTTCGGGACTTAGCCCGGA
1 -GCACAATGCCTTCGGGACTTAGCCCGGA
63152239 CATCATTCGA
Statistics
Matches: 89, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
38 24 0.27
39 21 0.24
40 37 0.42
41 7 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
GCACAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTT
Found at i:63155376 original size:49 final size:49
Alignment explanation
Indices: 63155304--63155447 Score: 200
Period size: 49 Copynumber: 2.9 Consensus size: 49
63155294 GTCGAAGCTA
63155304 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-ACAGT
* * * *
63155353 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCACAG-T
* *
63155403 TTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TCT-GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
63155448 TCACAATAGA
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
48 4 0.05
49 40 0.49
50 2 0.02
51 36 0.44
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCACAGT
Found at i:63159022 original size:40 final size:39
Alignment explanation
Indices: 63158977--63159106 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
63158967 CGGAATATAA
63158977 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
63159017 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63159057 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
63159097 CCGGATATAA
1 CCGGATATAA
63159107 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:63159121 original size:40 final size:40
Alignment explanation
Indices: 63158993--63159144 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
63158983 ATAACCATGT
* * *
63158993 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
63159033 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63159073 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63159113 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
63159145 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:63159127 original size:80 final size:80
Alignment explanation
Indices: 63158993--63159142 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
63158983 ATAACCATGT
*
63158993 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
63159057 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
63159073 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
63159136 CCCGGAT
64 CCCGGAT
63159143 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:63167022 original size:40 final size:39
Alignment explanation
Indices: 63166977--63167106 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
63166967 CGGAATATAA
63166977 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
63167017 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63167057 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
63167097 CCGGATATAA
1 CCGGATATAA
63167107 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:63167121 original size:40 final size:40
Alignment explanation
Indices: 63166993--63167144 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
63166983 ATAACCATGT
* * *
63166993 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
63167033 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63167073 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63167113 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
63167145 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:63167127 original size:80 final size:80
Alignment explanation
Indices: 63166993--63167142 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
63166983 ATAACCATGT
*
63166993 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
63167057 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
63167073 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
63167136 CCCGGAT
64 CCCGGAT
63167143 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:63171362 original size:18 final size:17
Alignment explanation
Indices: 63171339--63171379 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
63171329 CCTTTTTTTC
63171339 TCTTTTTCATTTTCTCCT
1 TCTTTTTCATTTTC-CCT
* *
63171357 TCTTTTTCCTTTTCCTT
1 TCTTTTTCATTTTCCCT
63171374 TCTTTT
1 TCTTTT
63171380 CTCTTTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (17 bp):
TCTTTTTCATTTTCCCT
Found at i:63176556 original size:29 final size:29
Alignment explanation
Indices: 63176524--63176601 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
63176514 ATACCCTCCT
* *
63176524 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
63176553 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
63176582 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACCCAGTGCCA
63176602 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:63183844 original size:29 final size:29
Alignment explanation
Indices: 63183812--63183889 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
63183802 ATACCCTCCT
* *
63183812 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
63183841 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACCCAGTGCCATATATTTCC
* **
63183870 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACCCAGTGCCA
63183890 ATCTCGTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACCCAGTGCCATATATTTCC
Found at i:63201507 original size:9 final size:9
Alignment explanation
Indices: 63201495--63201551 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
63201485 TTTGATAAAC
63201495 ATGATATGT
1 ATGATATGT
*
63201504 ATGATATGCAC
1 ATGATATG--T
*
63201515 ATGACATGT
1 ATGATATGT
*
63201524 ATGATATGCAC
1 ATGATATG--T
63201535 ATGATATGT
1 ATGATATGT
63201544 ATGATATG
1 ATGATATG
63201552 CACAAGATGT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:63201518 original size:20 final size:20
Alignment explanation
Indices: 63201493--63201555 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
63201483 ATTTTGATAA
63201493 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63201513 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
63201533 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
63201553 ACA
1 ACA
63201556 AGATGTTCAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63201631 original size:24 final size:24
Alignment explanation
Indices: 63201604--63201769 Score: 250
Period size: 24 Copynumber: 7.0 Consensus size: 24
63201594 GGAGGAAGTG
63201604 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
63201628 CAAAAGGGCTTATG-CCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
63201651 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
63201675 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
63201699 --AAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
63201721 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
63201745 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
63201770 ATGATAAAGC
Statistics
Matches: 134, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
22 22 0.16
23 23 0.17
24 78 0.58
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:63201673 original size:47 final size:48
Alignment explanation
Indices: 63201604--63201769 Score: 250
Period size: 46 Copynumber: 3.5 Consensus size: 48
63201594 GGAGGAAGTG
63201604 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATG-CCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
63201651 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
* *
63201699 --AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
* *
63201745 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
63201770 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 3, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
46 44 0.40
47 38 0.34
48 18 0.16
49 11 0.10
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (48 bp):
CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:63209603 original size:9 final size:9
Alignment explanation
Indices: 63209591--63209647 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
63209581 TTTGATAAAC
63209591 ATGATATGT
1 ATGATATGT
*
63209600 ATGATATGCAC
1 ATGATATG--T
*
63209611 ATGACATGT
1 ATGATATGT
*
63209620 ATGATATGCAC
1 ATGATATG--T
63209631 ATGATATGT
1 ATGATATGT
63209640 ATGATATG
1 ATGATATG
63209648 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:63209614 original size:20 final size:20
Alignment explanation
Indices: 63209589--63209659 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
63209579 ATTTTGATAA
63209589 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63209609 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
63209629 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63209649 ACATGAGATGT
1 ACATGATATGT
63209660 TCAAAATGCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63209636 original size:11 final size:11
Alignment explanation
Indices: 63209600--63209654 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
63209590 CATGATATGT
63209600 ATGATATGCAC
1 ATGATATGCAC
* *
63209611 ATGACATG--T
1 ATGATATGCAC
63209620 ATGATATGCAC
1 ATGATATGCAC
*
63209631 ATGATATG--T
1 ATGATATGCAC
63209640 ATGATATGCAC
1 ATGATATGCAC
63209651 ATGA
1 ATGA
63209655 GATGTTCAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:63209669 original size:40 final size:40
Alignment explanation
Indices: 63209589--63209669 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
63209579 ATTTTGATAA
* *
63209589 ACATGATATGTATGATATGCACATGACATGTATGATATGC
1 ACATGATATGTATGATATGCACATGACATGTATAAAATGC
*
63209629 ACATGATATGTATGATATGCACATGAGATGT-TCAAAATGC
1 ACATGATATGTATGATATGCACATGACATGTAT-AAAATGC
63209669 A
1 A
63209670 TTGGGTTGGG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.03
40 36 0.97
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (40 bp):
ACATGATATGTATGATATGCACATGACATGTATAAAATGC
Found at i:63209747 original size:24 final size:24
Alignment explanation
Indices: 63209703--63209845 Score: 202
Period size: 24 Copynumber: 6.0 Consensus size: 24
63209693 GGAGGAAGTG
63209703 CAAAAGGGCTTA-GCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
63209726 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
63209750 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
63209774 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
63209797 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
63209821 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
63209846 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
23 34 0.31
24 66 0.59
25 11 0.10
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:63209779 original size:47 final size:47
Alignment explanation
Indices: 63209703--63209824 Score: 201
Period size: 47 Copynumber: 2.6 Consensus size: 47
63209693 GGAGGAAGTG
*
63209703 CAAAAGGGCTTA-GCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
63209750 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
63209797 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
63209825 AGAGGCTAGG
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
47 60 0.85
48 11 0.15
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:63211568 original size:40 final size:39
Alignment explanation
Indices: 63211511--63211732 Score: 241
Period size: 40 Copynumber: 5.6 Consensus size: 39
63211501 TCGAATGATG
* *
63211511 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-AAGTTACTAAA
* *
63211551 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACTAAA
* * *
63211591 TCCAGACTAAGATCCGAAGGCATTTGTGCAAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACTAAA
* * *
63211631 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAA
* *
63211670 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACTA-AA
* *
63211711 -CTGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGT-CCGAAGGCAT
63211733 CTGAACGAGT
Statistics
Matches: 159, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
39 34 0.21
40 115 0.72
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:63211717 original size:79 final size:80
Alignment explanation
Indices: 63211511--63211732 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 80
63211501 TCGAATGATG
* * *
63211511 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
*
63211575 TGTGCGAGTTACTAAA
65 GGTGCGAGTTACTAAA
* *
63211591 TCCAGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAAGACCCGAAGGCAT
63211653 TGGTGCGAGTTACTAAA
64 TGGTGCGAGTTACTAAA
* * * * * *
63211670 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACTGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGACCCGAAGGCAT
63211733 CTGAACGAGT
Statistics
Matches: 123, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 67 0.54
80 47 0.38
81 8 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGACCCGAAGGCATTG
GTGCGAGTTACTAAA
Found at i:63211757 original size:79 final size:79
Alignment explanation
Indices: 63211511--63211768 Score: 215
Period size: 79 Copynumber: 3.3 Consensus size: 79
63211501 TCGAATGATG
* * * * *
63211511 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-ATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAATCCCGAAGGCATTTGTGC-AAGTTACTAATA-CCGGGCTAAG-CCCGAAGGCAT
* **
63211574 TTGTGCGAGTTACTAAA
63 TGGAACGAGTTACTAAA
* ** *
63211591 TCCAGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTG
1 TCCGGGTTAA-ATCCCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTG
**
63211655 GTGCGAGTTACTAAA
65 GAACGAGTTACTAAA
* * * *
63211670 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATC
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCAAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCAT-
*
63211734 T-GAACGAG-TAGCTATA
63 TGGAACGAGTTA-CTAAA
*
63211750 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
63211769 TACGTGATTC
Statistics
Matches: 149, Mismatches: 21, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.02
79 80 0.54
80 55 0.37
81 11 0.07
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAATCCCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGG
AACGAGTTACTAAA
Found at i:63213218 original size:40 final size:40
Alignment explanation
Indices: 63213173--63213340 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
63213163 CGGAATATAA
63213173 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
63213213 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
63213253 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * * *
63213293 CCGGATATAATTTCCAGCATAATTGTCTTTGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63213333 CCGGATAT
1 CCGGATAT
63213341 CATTCAATTT
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 105 0.99
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63219456 original size:37 final size:38
Alignment explanation
Indices: 63219335--63219488 Score: 202
Period size: 38 Copynumber: 4.0 Consensus size: 38
63219325 CCGAATCCAG
* *
63219335 TTACCAGCACAAAGCCTGCGGGACTTTAAGCTCGGATATA
1 TTACCAGCACGAAGCCTGCGGGAC-TTAA-CCCGGATATA
* * * *
63219375 ATACCAGCACTAAGCCTGCGGGATTTAACCTGGATATA
1 TTACCAGCACGAAGCCTGCGGGACTTAACCCGGATATA
*
63219413 TTACCAGCACGAAGCCTGTGGGACTTAA-CCGGATATA
1 TTACCAGCACGAAGCCTGCGGGACTTAACCCGGATATA
* *
63219450 TTACCAGCATGAAGCCTGTGGGACTTAACCCGGATATA
1 TTACCAGCACGAAGCCTGCGGGACTTAACCCGGATATA
63219488 T
1 T
63219489 ATCGAGTGCT
Statistics
Matches: 102, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
37 35 0.34
38 42 0.41
39 4 0.04
40 21 0.21
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (38 bp):
TTACCAGCACGAAGCCTGCGGGACTTAACCCGGATATA
Found at i:63219478 original size:75 final size:78
Alignment explanation
Indices: 63219335--63219488 Score: 217
Period size: 75 Copynumber: 2.0 Consensus size: 78
63219325 CCGAATCCAG
*
63219335 TTACCAGCACAAAGCCTGCGGGACTTTAAGCTCGGATATAATACCAGCACTAAGCCTGCGGGATT
1 TTACCAGCACAAAGCCTGCGGGACTTTAAGCTCGGATATAATACCAGCACTAAGCCTGCGGGACT
*
63219400 TAACCTGGATATA
66 TAACCCGGATATA
* * * *
63219413 TTACCAGCACGAAGCCTGTGGGAC-TTAA-C-CGGATATATTACCAGCA-TGAAGCCTGTGGGAC
1 TTACCAGCACAAAGCCTGCGGGACTTTAAGCTCGGATATAATACCAGCACT-AAGCCTGCGGGAC
63219474 TTAACCCGGATATA
65 TTAACCCGGATATA
63219488 T
1 T
63219489 ATCGAGTGCT
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
74 1 0.01
75 41 0.59
76 1 0.01
77 4 0.06
78 22 0.32
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (78 bp):
TTACCAGCACAAAGCCTGCGGGACTTTAAGCTCGGATATAATACCAGCACTAAGCCTGCGGGACT
TAACCCGGATATA
Found at i:63227536 original size:40 final size:40
Alignment explanation
Indices: 63227491--63227672 Score: 269
Period size: 40 Copynumber: 4.5 Consensus size: 40
63227481 ATAACCACAA
* *
63227491 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
*
63227531 GCACAAATGCCTTCGGGTCTTAGCCCGGATATTA-CAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATA-TAGCAACTC
63227571 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
63227611 GCACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* *
63227651 GCATAAATGCCTTCGGGGCTTA
1 GCACAAATGCCTTCGGGTCTTA
63227673 GCCGGGTATC
Statistics
Matches: 131, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 2 0.02
40 125 0.95
41 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:63227575 original size:80 final size:80
Alignment explanation
Indices: 63227475--63227681 Score: 301
Period size: 80 Copynumber: 2.6 Consensus size: 80
63227465 CGGAATTTAG
* * *
63227475 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
*
63227540 CCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAAC
* * *
63227555 CCGGATATTA-CAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAAT
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAAT
63227619 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTCTTAAC
* * *
63227635 CCGGATATAATCACTAGCATAAATGCCTTCGGGGCTT-AGCCGGGTAT
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
63227682 CATTCAATTG
Statistics
Matches: 113, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
79 9 0.08
80 103 0.91
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
CCTTCGGGTCTTAAC
Found at i:63235640 original size:79 final size:80
Alignment explanation
Indices: 63235547--63235713 Score: 223
Period size: 79 Copynumber: 2.1 Consensus size: 80
63235537 TCTTCGGAAT
* * * *
63235547 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTAT-AGCAACTCGCA
1 TTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAAGC-ACTAGCA
*
63235610 CAAATGCCTTC-GGTC
65 CAAATGCCTTCGGGGC
** * *
63235625 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAATCACTAGCAT
1 TTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAAGCACTAGCAC
63235690 AAATGCCTTCGGGGC
66 AAATGCCTTCGGGGC
63235705 TTAGCCCGG
1 TTAGCCCGG
63235714 GTATCATTCA
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
78 4 0.05
79 59 0.77
80 14 0.18
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAAGCACTAGCAC
AAATGCCTTCGGGGC
Found at i:63235644 original size:39 final size:40
Alignment explanation
Indices: 63235547--63235713 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
63235537 TCTTCGGAAT
* * *
63235547 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * * *
63235586 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTC-GGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
*
63235625 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
63235665 TTAACCCGGATATAATC-ACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
63235705 TTAGCCCGG
1 TTAGCCCGG
63235714 GTATCATTCA
Statistics
Matches: 110, Mismatches: 15, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
39 39 0.35
40 70 0.64
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:63237723 original size:27 final size:27
Alignment explanation
Indices: 63237664--63237734 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 27
63237654 TAATAATAGT
* *
63237664 ATACGTGGCATAGCCA-CTGATATTAGA
1 ATACGTGGCA-AGCCACCAGATAGTAGA
63237691 ATACGTGGCAAGCCACCAGAATAGTAGA
1 ATACGTGGCAAGCCACCAG-ATAGTAGA
63237719 A-ACGTGGCAAGGCCAC
1 ATACGTGGCAA-GCCAC
63237735 TAGTACAGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.13
27 21 0.54
28 13 0.33
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
ATACGTGGCAAGCCACCAGATAGTAGA
Found at i:63237744 original size:28 final size:28
Alignment explanation
Indices: 63237687--63237744 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
63237677 CCACTGATAT
*
63237687 TAGAATACGTGGCAAGCCACCAGAATAG
1 TAGAATACGTGGCAAGCCACCAGAACAG
* *
63237715 TAGAA-ACGTGGCAAGGCCACTAGTACAG
1 TAGAATACGTGGCAA-GCCACCAGAACAG
63237743 TA
1 TA
63237745 CTTCCTCCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 9 0.35
28 17 0.65
ACGTcount: A:0.38, C:0.21, G:0.26, T:0.16
Consensus pattern (28 bp):
TAGAATACGTGGCAAGCCACCAGAACAG
Found at i:63238093 original size:17 final size:17
Alignment explanation
Indices: 63238071--63238110 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
63238061 GACCCAAGTA
*
63238071 GGCCCATACGCTCGTGT
1 GGCCCACACGCTCGTGT
63238088 GGCCCACACGCTCGTGT
1 GGCCCACACGCTCGTGT
63238105 GGCCCA
1 GGCCCA
63238111 ATTAGCCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.12, C:0.40, G:0.30, T:0.17
Consensus pattern (17 bp):
GGCCCACACGCTCGTGT
Found at i:63244741 original size:2 final size:2
Alignment explanation
Indices: 63244734--63244758 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
63244724 AACTTTGATT
63244734 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
63244759 TTGAACCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63246473 original size:27 final size:27
Alignment explanation
Indices: 63246431--63246645 Score: 261
Period size: 27 Copynumber: 8.0 Consensus size: 27
63246421 AATCTCATAT
* *
63246431 CTGTAGGCTAGCATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
** *
63246458 CTGTAGGGTAGAATTACTAAAATACTC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
63246485 TTGTAAGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
63246512 CTGTAGGGTAGAATTTCTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
63246539 CTGTAGGATAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
63246566 TTGTAGGGTAGAAATACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * * *
63246593 TTATGGGGTA-AAATACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
63246619 CTATAGGGTAGAATTACCGAGATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
63246646 TCATGGGATA
Statistics
Matches: 161, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 24 0.15
27 137 0.85
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACCGAAATACCC
Found at i:63247316 original size:27 final size:26
Alignment explanation
Indices: 63247272--63247323 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63247262 CTCGCTGCAA
*
63247272 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
63247299 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
63247324 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:63249571 original size:27 final size:27
Alignment explanation
Indices: 63249529--63249761 Score: 268
Period size: 27 Copynumber: 8.6 Consensus size: 27
63249519 AATCTCATAT
* * *
63249529 CTGTAGGCTAGCATTACCGAAATACTC
1 CTGTAGGGTAGAATTACCGAAATACCC
** *
63249556 CTGTAGGGTAGAATTACTAAAATACTC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
63249583 CTGTAAGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
63249610 CTATAAGGTAAAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * *
63249637 CTATAAGGTAGAATTACAGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
*
63249664 CTGTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* * * *
63249691 TTGTAAGATAGATTTACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
63249718 TTGTAGGGTAGAAATACCGAAATACCC
1 CTGTAGGGTAGAATTACCGAAATACCC
* *
63249745 CTATAGGGTAAAATTAC
1 CTGTAGGGTAGAATTAC
63249762 ACAGATACCC
Statistics
Matches: 178, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 178 1.00
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACCGAAATACCC
Found at i:63249769 original size:27 final size:27
Alignment explanation
Indices: 63249541--63249789 Score: 234
Period size: 27 Copynumber: 9.2 Consensus size: 27
63249531 GTAGGCTAGC
* *
63249541 ATTACCGAAATACTCCTGTAGGGTAGA
1 ATTACCGAAATACCCCTGTAGGGTAAA
** * * *
63249568 ATTACTAAAATACTCCTGTAAGGTAGA
1 ATTACCGAAATACCCCTGTAGGGTAAA
* *
63249595 ATTACCGAAATACCCCTATAAGGTAAA
1 ATTACCGAAATACCCCTGTAGGGTAAA
* * *
63249622 ATTACCGAAATACCCCTATAAGGTAGA
1 ATTACCGAAATACCCCTGTAGGGTAAA
* *
63249649 ATTACAGAAATACCCCTGTAGGGTAGA
1 ATTACCGAAATACCCCTGTAGGGTAAA
* * * * *
63249676 ATTACTGAAATACCCTTGTAAGATAGA
1 ATTACCGAAATACCCCTGTAGGGTAAA
* *
63249703 TTTACCGAAATACCCTTGTAGGGTAGAA
1 ATTACCGAAATACCCCTGTAGGGTA-AA
*
63249731 A-TACCGAAATACCCCTATAGGGTAAA
1 ATTACCGAAATACCCCTGTAGGGTAAA
* *
63249757 ATTACAC-AGATA-CCCTCGTCGGGTAAA
1 ATTAC-CGAAATACCCCT-GTAGGGTAAA
63249784 ATTACC
1 ATTACC
63249790 ATTTTGCCTC
Statistics
Matches: 191, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.04
27 181 0.95
28 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (27 bp):
ATTACCGAAATACCCCTGTAGGGTAAA
Found at i:63249789 original size:81 final size:79
Alignment explanation
Indices: 63249541--63249789 Score: 259
Period size: 81 Copynumber: 3.1 Consensus size: 79
63249531 GTAGGCTAGC
* *
63249541 ATTACCGAAATACTCCTGTAGGGTAGAATTACTA-AAATACTCCTGTAAGGTAGAATTACCGAAA
1 ATTACCGAAATAC-CCTGTAGGGTAGAATTAC-AGAAATACCCCTGTAGGGTAGAATTACC-AAA
*
63249605 TACCC-CTATAAGGTAAA
63 TACCCTC-GTAAGGTAAA
* * *
63249622 ATTACCGAAATACCCCTATAAGGTAGAATTACAGAAATACCCCTGTAGGGTAGAATTACTGAAAT
1 ATTACCGAAATA-CCCTGTAGGGTAGAATTACAGAAATACCCCTGTAGGGTAGAATTAC-CAAAT
* * *
63249687 ACCCTTGTAAGATAGA
64 ACCCTCGTAAGGTAAA
* * * * * *
63249703 TTTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAAAATTACACAGAT
1 ATTACCGAAATACCC-TGTAGGGTAGAATTACAGAAATACCCCTGTAGGGTAGAATTAC-CAAAT
**
63249768 ACCCTCGTCGGGTAAA
64 ACCCTCGTAAGGTAAA
63249784 ATTACC
1 ATTACC
63249790 ATTTTGCCTC
Statistics
Matches: 138, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
80 4 0.03
81 133 0.96
82 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (79 bp):
ATTACCGAAATACCCTGTAGGGTAGAATTACAGAAATACCCCTGTAGGGTAGAATTACCAAATAC
CCTCGTAAGGTAAA
Found at i:63255998 original size:14 final size:14
Alignment explanation
Indices: 63255966--63256000 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
63255956 AAAAGTAAGT
*
63255966 CATTTTCTAGAAAT
1 CATTTTCTAGAAAC
*
63255980 TATTTTCTAGAAAC
1 CATTTTCTAGAAAC
63255994 CATTTTC
1 CATTTTC
63256001 AGTTAAACAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (14 bp):
CATTTTCTAGAAAC
Found at i:63258864 original size:36 final size:36
Alignment explanation
Indices: 63258789--63258857 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
63258779 TGTTTTTGGG
*
63258789 TGGACTGGCTCGTATGAGCATCTGATGTGTTTCGAT
1 TGGACTAGCTCGTATGAGCATCTGATGTGTTTCGAT
* *
63258825 TGGACTAGCTCTTATGAGCATCTGGTGTGTTTC
1 TGGACTAGCTCGTATGAGCATCTGATGTGTTTC
63258858 AGTTGGAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.16, C:0.17, G:0.29, T:0.38
Consensus pattern (36 bp):
TGGACTAGCTCGTATGAGCATCTGATGTGTTTCGAT
Found at i:63281120 original size:40 final size:40
Alignment explanation
Indices: 63281072--63281282 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 40
63281062 TTCTTCGAAT
* * * *
63281072 TTAG-CCGGATACAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
63281111 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
63281151 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
63281191 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
63281231 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
63281271 TTAG-CCGGATAT
1 TTAGCCCGGATAT
63281283 CATTCGAATG
Statistics
Matches: 148, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
39 11 0.07
40 136 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:63289384 original size:40 final size:40
Alignment explanation
Indices: 63289334--63289527 Score: 244
Period size: 40 Copynumber: 4.8 Consensus size: 40
63289324 CAACCACAAC
* * * ** *
63289334 CACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTG
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAG
*
63289374 CACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTAG
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAG
* *
63289414 CACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAG
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAG
* * *
63289454 CATAAATGCCTTCGGGACTTAGCCCGGATATAATCACTAG
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAG
* * * *
63289494 CATAAATACCTTTGGGACTTAGCCCGGATATAAT
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
63289528 CATTCGAATG
Statistics
Matches: 139, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 139 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (40 bp):
CACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAG
Found at i:63292345 original size:31 final size:31
Alignment explanation
Indices: 63292310--63292373 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
63292300 TCATAAATCA
63292310 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
63292341 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
63292372 TT
1 TT
63292374 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:63292615 original size:24 final size:24
Alignment explanation
Indices: 63292564--63292706 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
63292554 TGTTTATCAT
*
63292564 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
63292589 ATAACTGGGGTAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
63292613 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
63292636 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
63292660 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
63292684 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63292707 TCACTTCCTC
Statistics
Matches: 107, Mismatches: 9, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
23 23 0.21
24 72 0.67
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:63292643 original size:47 final size:48
Alignment explanation
Indices: 63292564--63292705 Score: 189
Period size: 47 Copynumber: 3.0 Consensus size: 48
63292554 TGTTTATCAT
* * *
63292564 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGTAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
63292613 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
* *
63292660 ATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
63292706 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
47 42 0.49
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:63292664 original size:71 final size:72
Alignment explanation
Indices: 63292563--63292706 Score: 202
Period size: 71 Copynumber: 2.0 Consensus size: 72
63292553 CTGTTTATCA
* * *
63292563 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGTAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
63292628 GCCCTTT
66 GCCCTTT
* * **
63292635 TATAACTGG-GGCATAAGCC-CTTTTGATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTCAATAACTGGGGCATA
63292698 AGCCCTTT
65 AGCCCTTT
63292706 T
1 T
63292707 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
71 51 0.80
72 13 0.20
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTAGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:63292781 original size:20 final size:20
Alignment explanation
Indices: 63292756--63292816 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
63292746 TTATGATTAC
63292756 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
63292776 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
63292796 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
63292816 A
1 A
63292817 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63292891 original size:25 final size:25
Alignment explanation
Indices: 63292859--63292906 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63292849 ATACATAAAC
* * *
63292859 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63292884 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
63292907 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:63294553 original size:27 final size:27
Alignment explanation
Indices: 63294143--63294542 Score: 464
Period size: 27 Copynumber: 14.8 Consensus size: 27
63294133 GGGTATTTTA
* * *
63294143 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
63294170 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
63294197 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
63294224 GTAATTCTATAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
63294251 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * * *
63294278 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
63294305 GTAATTCTGTAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
63294332 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
63294359 ATAATTATGTAAATCG-GAGGTAAAACG
1 GTAATTCTATAAATCGAG-GGTAAAACG
* * *
63294386 GTAATTATGTAAAT-TAGAGGTAAAACG
1 GTAATTCTATAAATCGAG-GGTAAAACG
* **
63294413 ATAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
63294440 GTAATTCTGTAAA-CTAAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
*
63294467 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
63294494 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
63294521 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
63294543 CTTTGGTAAT
Statistics
Matches: 327, Mismatches: 41, Indels: 10
0.87 0.11 0.03
Matches are distributed among these distances:
26 2 0.01
27 322 0.98
28 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:63294567 original size:27 final size:27
Alignment explanation
Indices: 63294537--63294743 Score: 161
Period size: 27 Copynumber: 7.7 Consensus size: 27
63294527 CTATAAATCG
*
63294537 AGGGTACTTTGGTAATTTTACAAGTCA
1 AGGGTATTTTGGTAATTTTACAAGTCA
*** * *
63294564 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACAAGTCA
** * * *
63294591 AGGGTATTTCAGTAATTTCACAAATTA
1 AGGGTATTTTGGTAATTTTACAAGTCA
* *
63294618 GGGGTATTTTGGTAATTTTACAA-ACTA
1 AGGGTATTTTGGTAATTTTACAAGTC-A
* * *
63294645 GGGGTATTTTGATAATTTTACAA-ACTA
1 AGGGTATTTTGGTAATTTTACAAGTC-A
* * **
63294672 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAGTCA
*
63294699 AGGGTATTTTAGTAATTTTACAAAG-C-
1 AGGGTATTTTGGTAATTTTAC-AAGTCA
*
63294725 AGGGTATTTTGTTAATTTT
1 AGGGTATTTTGGTAATTTT
63294744 GTAAACCAAA
Statistics
Matches: 149, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
26 17 0.11
27 129 0.87
28 3 0.02
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAGTCA
Found at i:63294606 original size:81 final size:79
Alignment explanation
Indices: 63294495--63294733 Score: 205
Period size: 81 Copynumber: 3.0 Consensus size: 79
63294485 GGTAAAACGG
*** * * *
63294495 TAATTTTACAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACA
1 TAATTTTACAAA-CGAGGGGTATTTCAGTAATT-TATAAATCAAGGGTATTTTGGTAATTTTACA
63294559 AGTCAAGGGTATTTCAA
64 AG-CAAGGGTATTTCAA
** * * *
63294576 TAATTTTACAGGTCGA-GGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACA
1 TAATTTTACA-AACGAGGGGTATTTCAGTAATTT-ATAAATCAAGGGTATTTTGGTAATTTTACA
* * **
63294640 AACTAGGGGTATTTTGA
64 AGC-AAGGGTATTTCAA
* ** * *
63294657 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAA
1 TAATTTTACAAACGAGGGGTATTTCAGTAA-TTTATAAATCAAGGGTATTTTGGTAATTTTAC-A
63294722 AGC-AGGGTATTT
64 AGCAAGGGTATTT
63294734 TGTTAATTTT
Statistics
Matches: 125, Mismatches: 27, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
80 12 0.10
81 107 0.86
82 6 0.05
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (79 bp):
TAATTTTACAAACGAGGGGTATTTCAGTAATTTATAAATCAAGGGTATTTTGGTAATTTTACAAG
CAAGGGTATTTCAA
Found at i:63294740 original size:26 final size:27
Alignment explanation
Indices: 63294592--63294743 Score: 191
Period size: 27 Copynumber: 5.7 Consensus size: 27
63294582 TACAGGTCGA
** * *
63294592 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
63294619 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
63294646 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
63294673 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
63294700 GGGTATTTTAGTAATTTTACAAAGC-A-
1 GGGTATTTTGGTAATTTTACAAA-CTAG
*
63294726 GGGTATTTTGTTAATTTT
1 GGGTATTTTGGTAATTTT
63294744 GTAAACCAAA
Statistics
Matches: 111, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
26 16 0.14
27 94 0.85
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:63294757 original size:26 final size:25
Alignment explanation
Indices: 63294620--63294760 Score: 111
Period size: 27 Copynumber: 5.3 Consensus size: 25
63294610 ACAAATTAGG
* * *
63294620 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTT-GTAATTTTATAAACCA-A
* * *
63294647 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTG-TAATTTTATAAACCA-A
63294674 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTT-GTAATTTTATAAACCAA
* * *
63294700 GGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTT-GTAATTTTATAAACCAA
*
63294727 GGTATTTTGTTAATTTTGTAAACCAA
1 GGTATTTTG-TAATTTTATAAACCAA
*
63294753 AGTATTTT
1 GGTATTTT
63294761 AAATAGGGAT
Statistics
Matches: 98, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
25 1 0.01
26 28 0.29
27 68 0.69
28 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (25 bp):
GGTATTTTGTAATTTTATAAACCAA
Found at i:63297584 original size:31 final size:31
Alignment explanation
Indices: 63297549--63297612 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
63297539 TTTCATATCA
63297549 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
63297580 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
63297611 TT
1 TT
63297613 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:63297881 original size:23 final size:24
Alignment explanation
Indices: 63297804--63297944 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
63297794 GCTTTATCAT
* *
63297804 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
63297829 ATAACT-GGG-AAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
63297851 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
63297874 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
63297898 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
63297922 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63297945 TCACTTCCTC
Statistics
Matches: 107, Mismatches: 5, Indels: 9
0.88 0.04 0.07
Matches are distributed among these distances:
22 11 0.10
23 32 0.30
24 58 0.54
25 6 0.06
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:63297891 original size:47 final size:48
Alignment explanation
Indices: 63297804--63297943 Score: 189
Period size: 47 Copynumber: 3.0 Consensus size: 48
63297794 GCTTTATCAT
* *
63297804 ATAACTGGAGGCCT-AGCCTCTTTTAATAACT-GGG-AAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
63297851 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
63297898 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
63297944 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
45 6 0.07
46 12 0.14
47 45 0.53
48 22 0.26
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:63298019 original size:20 final size:20
Alignment explanation
Indices: 63297994--63298054 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
63297984 TTATGATTAC
63297994 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
63298014 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
63298034 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
63298054 A
1 A
63298055 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63299346 original size:27 final size:27
Alignment explanation
Indices: 63299316--63299401 Score: 73
Period size: 27 Copynumber: 3.2 Consensus size: 27
63299306 TACCATACAG
*
63299316 GGGTATTTTGGTAGTTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATTGA
* ** * * *
63299343 GGGTGTTGCGGTAATTTCACAAACTAA
1 GGGTATTTTGGTAATTTTACAAATTGA
* ** *
63299370 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATTGA
63299397 GGGTA
1 GGGTA
63299402 AAACAGTAAT
Statistics
Matches: 42, Mismatches: 17, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.28, C:0.07, G:0.27, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATTGA
Found at i:63299409 original size:27 final size:27
Alignment explanation
Indices: 63299380--63299779 Score: 516
Period size: 27 Copynumber: 14.8 Consensus size: 27
63299370 GGGTATTTTA
* *
63299380 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
63299407 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
63299434 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
63299461 GTAATTCTGTAAATCGAGGGTGAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
63299488 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * * *
63299515 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
63299542 GTAATTCTGTAAATTGAGGGTGAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
63299569 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
63299596 ATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
63299623 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* * **
63299650 GTAACTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
63299677 GTAATTCTGTAAA-CTAAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACG
63299704 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
63299731 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
63299758 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
63299780 CTTTGGTAAT
Statistics
Matches: 324, Mismatches: 45, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 321 0.99
28 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:63299859 original size:27 final size:27
Alignment explanation
Indices: 63299829--63299980 Score: 200
Period size: 27 Copynumber: 5.7 Consensus size: 27
63299819 TACAGGTCGA
** * *
63299829 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
63299856 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
63299883 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
63299910 GGATATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
*
63299937 GGGTATTTTAGTAATTTTACAAAGC-A-
1 GGGTATTTTGGTAATTTTACAAA-CTAG
63299963 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
63299981 GTAAACCAAA
Statistics
Matches: 112, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
26 17 0.15
27 94 0.84
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:63299997 original size:26 final size:26
Alignment explanation
Indices: 63299774--63299980 Score: 189
Period size: 27 Copynumber: 7.7 Consensus size: 26
63299764 CTATAAATCG
* * *
63299774 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAA-ACC
*** ** *
63299801 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACA-AACC
** * **
63299828 AGGGTATTTCAGTAATTTCACAAATT
1 AGGGTATTTTGGTAATTTTACAAACC
*
63299854 AGGGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACC
*
63299881 AGGGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACC
*
63299908 AGGGATATTTTGGTAATTTTATAAACC
1 AGGG-TATTTTGGTAATTTTACAAACC
* *
63299935 AAGGGTATTTTAGTAATTTTACAAAGC
1 -AGGGTATTTTGGTAATTTTACAAACC
63299962 AGGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAATTTT
63299981 GTAAACCAAA
Statistics
Matches: 155, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.14
27 129 0.83
28 4 0.03
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACC
Found at i:63308461 original size:48 final size:48
Alignment explanation
Indices: 63308369--63308602 Score: 344
Period size: 48 Copynumber: 4.9 Consensus size: 48
63308359 TATATATATG
* **
63308369 TGTGGTAAACCCGAATGGCGTGAAT-AAAAATATGTATGAGATATGTACA
1 TGTGGTAAAGCCGAATGGC-T-AATGTGAAATATGTATGAGATATGTACA
63308418 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTACA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTACA
* *
63308466 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTACA
* * *
63308514 TGTGATAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTACA
* * *
63308562 TGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
63308603 GTGTGTATAT
Statistics
Matches: 173, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
47 3 0.02
48 152 0.88
49 18 0.10
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.29
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTACA
Found at i:63308796 original size:37 final size:37
Alignment explanation
Indices: 63308746--63308845 Score: 173
Period size: 37 Copynumber: 2.7 Consensus size: 37
63308736 AATATATTCT
63308746 GGGTAAGACCCGATGACTACGTGTGGAGATTATGCCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGCCC
* *
63308783 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGCCC
*
63308820 GGGTAAGACCCGATAACTACGTGTGG
1 GGGTAAGACCCGATGACTACGTGTGG
63308846 GGACTATTCG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.23
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGCCC
Found at i:63313262 original size:31 final size:31
Alignment explanation
Indices: 63313221--63313281 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
63313211 TTTCATATTT
* *
63313221 CATATTTCATAACACTGGGCTGAAGCCTTTC
1 CATATCTCATAACACTGGGCCGAAGCCTTTC
**
63313252 CATATCTCATATTACTGGGCCGAAGCCTTT
1 CATATCTCATAACACTGGGCCGAAGCCTTT
63313282 ACTGTAAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (31 bp):
CATATCTCATAACACTGGGCCGAAGCCTTTC
Found at i:63313517 original size:25 final size:24
Alignment explanation
Indices: 63313489--63313548 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 24
63313479 CTAGAGGCCT
63313489 AGCCTCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATA
*
63313514 AGCCCTTTATCATAACTGGGGCATA
1 AGCCCTTT-TAATAACTGGGGCATA
63313539 AGCCCTTTTA
1 AGCCCTTTTA
63313549 CACTTCCTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
24 5 0.16
25 27 0.84
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:63313622 original size:20 final size:20
Alignment explanation
Indices: 63313597--63313643 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
63313587 TTATGAATAC
63313597 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
63313617 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63313637 ACCATGT
1 ATCATGT
63313644 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63320936 original size:24 final size:25
Alignment explanation
Indices: 63320909--63320971 Score: 85
Period size: 24 Copynumber: 2.6 Consensus size: 25
63320899 TCAACCGTAT
* * *
63320909 TCGCACACATAGTGCTA-ATTACAC
1 TCGCACACATAGTGCCATAGTAAAC
63320933 TCGCACACATAGTGCCATAGTAAAC
1 TCGCACACATAGTGCCATAGTAAAC
63320958 -CGCACACATAGTGC
1 TCGCACACATAGTGC
63320972 ATTGGATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 30 0.86
25 5 0.14
ACGTcount: A:0.33, C:0.30, G:0.16, T:0.21
Consensus pattern (25 bp):
TCGCACACATAGTGCCATAGTAAAC
Found at i:63327037 original size:15 final size:15
Alignment explanation
Indices: 63327017--63327046 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63327007 TGGCATGTTC
63327017 GCCATGGTTGTTGAT
1 GCCATGGTTGTTGAT
63327032 GCCATGGTTGTTGAT
1 GCCATGGTTGTTGAT
63327047 ATAGCTAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.33, T:0.40
Consensus pattern (15 bp):
GCCATGGTTGTTGAT
Found at i:63331826 original size:46 final size:46
Alignment explanation
Indices: 63331776--63331951 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
63331766 TGGTTGAGCA
63331776 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63331822 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
63331867 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
63331915 CCCGAGCTCGTTGAGTTGAGTCCTAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63331952 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63331932 original size:93 final size:93
Alignment explanation
Indices: 63331773--63331944 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63331763 GGATGGTTGA
*
63331773 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
63331838 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
63331866 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
*
63331931 TGAGTCCTAGTTCG
66 TGAGTCCGAGTTCG
63331945 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63336105 original size:43 final size:42
Alignment explanation
Indices: 63336057--63336169 Score: 124
Period size: 42 Copynumber: 2.7 Consensus size: 42
63336047 TGTGTTTACA
*
63336057 TGTAAGACCATGTCTAGGACATTGGCATTGTATTGAA-ATTTTG
1 TGTAAGACCATGTCTAGGACATTGGCATT-CATT-AACATTTTG
* *
63336100 TGTAAGACCATGTTTGGGA-ATTGGCA-TCATTAATCGATTTTG
1 TGTAAGACCATGTCTAGGACATTGGCATTCATTAA-C-ATTTTG
* *
63336142 TGTAAGACCCTGTCTAGGACAGTGGCAT
1 TGTAAGACCATGTCTAGGACATTGGCAT
63336170 CGATATGTGA
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
39 2 0.03
40 3 0.05
41 1 0.02
42 29 0.50
43 23 0.40
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.35
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACATTGGCATTCATTAACATTTTG
Found at i:63346919 original size:6 final size:6
Alignment explanation
Indices: 63346908--63346936 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
63346898 TAGGTTTCCA
63346908 AAAATG AAAATG AAAATG AAAATG AAAAT
1 AAAATG AAAATG AAAATG AAAATG AAAAT
63346937 TTGCAATCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (6 bp):
AAAATG
Found at i:63352254 original size:49 final size:46
Alignment explanation
Indices: 63352181--63352285 Score: 140
Period size: 49 Copynumber: 2.2 Consensus size: 46
63352171 TTGGGATGGT
*
63352181 GGGGAGAGGGAAAGAATCAAAGTAGGAGAAGGGATGGTGGGGAAGA
1 GGGGAGAGGGAAAGAATCAAAGTAGGAGAAGGGATGGTAGGGAAGA
* * *
63352227 GGGGGAGAGGGAGAGAGAATCACAGTAGGGGAAGGGGTGGTAGGGAAGA
1 -GGGGAGAGGGA-A-AGAATCAAAGTAGGAGAAGGGATGGTAGGGAAGA
63352276 -GGGAGAGGGA
1 GGGGAGAGGGA
63352286 TGGAAGAGCA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
47 21 0.40
48 1 0.02
49 30 0.58
ACGTcount: A:0.35, C:0.03, G:0.54, T:0.08
Consensus pattern (46 bp):
GGGGAGAGGGAAAGAATCAAAGTAGGAGAAGGGATGGTAGGGAAGA
Found at i:63353753 original size:17 final size:17
Alignment explanation
Indices: 63353731--63353766 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
63353721 TATCCGACGC
63353731 CGAAACATGGTATGAGG
1 CGAAACATGGTATGAGG
63353748 CGAAACATGGTATGAGG
1 CGAAACATGGTATGAGG
63353765 CG
1 CG
63353767 TTACCTATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.14, G:0.36, T:0.17
Consensus pattern (17 bp):
CGAAACATGGTATGAGG
Done.