Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 212 of 335
Found at i:63358862 original size:19 final size:19
Alignment explanation
Indices: 63358827--63358863 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
63358817 TCACATCCAA
*
63358827 TTACAAAATTTTAAAAACT
1 TTACAAAATATTAAAAACT
*
63358846 TTACAAAATATTGAAAAC
1 TTACAAAATATTAAAAAC
63358864 CACGAATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.11, G:0.03, T:0.32
Consensus pattern (19 bp):
TTACAAAATATTAAAAACT
Found at i:63361732 original size:16 final size:18
Alignment explanation
Indices: 63361711--63361747 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
63361701 AAGGGAGAAT
63361711 AAAG-AAATG-GAAAAAA
1 AAAGAAAATGAGAAAAAA
63361727 AAAGAAAATGATGAAAAAA
1 AAAGAAAATGA-GAAAAAA
63361746 AA
1 AA
63361748 TGTGTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.22
17 5 0.28
19 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (18 bp):
AAAGAAAATGAGAAAAAA
Found at i:63363086 original size:29 final size:29
Alignment explanation
Indices: 63363054--63363156 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
63363044 GTGACGAGAT
* *
63363054 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
63363083 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
63363112 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
63363141 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63363157 TGATCGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:63384153 original size:40 final size:40
Alignment explanation
Indices: 63384098--63384322 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
63384088 TATTCGGATG
*
63384098 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
* * *
63384138 ATATCCGGACTAAGTCCCAAAGGCATTTGTGCT-AGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACT
* * *
63384178 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT--GTG-AGTTACT
* * *
63384221 ATACCCGGGCTAAGTCCCGAAGGCAGTTGTGCT-AGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACT
* * *
63384261 ACATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
*
63384301 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
63384323 TACTTGGGTT
Statistics
Matches: 153, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
39 15 0.10
40 103 0.67
41 2 0.01
42 1 0.01
43 32 0.21
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
Found at i:63384256 original size:83 final size:80
Alignment explanation
Indices: 63384098--63384322 Score: 326
Period size: 83 Copynumber: 2.8 Consensus size: 80
63384088 TATTCGGATG
* * *
63384098 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTCCTATATCCGGACTAAGTCCCAAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
*
63384163 TTTGTGCTAGTGACT
66 GTTGTGCTAGTGACT
* * *
63384178 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT--GTG-AGTTGCTATATCCGGGCTAAGTCCCGAAG
63384243 GCAGTTGTGCTAGTGACT
63 GCAGTTGTGCTAGTGACT
* * *
63384261 ACATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
63384323 TACTTGGGTT
Statistics
Matches: 129, Mismatches: 13, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
79 15 0.12
80 41 0.32
81 2 0.02
82 2 0.02
83 69 0.53
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
GTTGTGCTAGTGACT
Found at i:63387867 original size:40 final size:39
Alignment explanation
Indices: 63387822--63387951 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
63387812 CGGAACATAA
63387822 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
63387862 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63387902 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
63387942 CCGGATATAA
1 CCGGATATAA
63387952 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:63387966 original size:40 final size:40
Alignment explanation
Indices: 63387838--63387989 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
63387828 ATAACCATGT
* * *
63387838 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
63387878 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63387918 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63387958 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
63387990 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:63387972 original size:80 final size:80
Alignment explanation
Indices: 63387838--63387987 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
63387828 ATAACCATGT
*
63387838 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
63387902 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
63387918 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
63387981 CCCGGAT
64 CCCGGAT
63387988 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:63395972 original size:40 final size:40
Alignment explanation
Indices: 63395845--63395994 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
63395835 GATATAACGT
* *
63395845 GCACAAATGCCTTCGGGTCTTAGCCCGGAATAGAATCT-C-
1 GCACAATTGCCTTCGGGTCTTAGCCCGG-ATATAATCTCCA
* ** * *
63395884 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
63395924 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
63395964 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
63395995 CATTCAATTT
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
38 4 0.04
39 39 0.43
40 47 0.52
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:63404421 original size:15 final size:15
Alignment explanation
Indices: 63404401--63404469 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
63404391 GTATCTTGGG
63404401 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
63404416 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
63404431 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
63404446 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
63404461 TTTCTTTAT
1 TTTCTTTAT
63404470 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:63404470 original size:30 final size:30
Alignment explanation
Indices: 63404392--63404479 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
63404382 CATAGTATCG
* * * *
63404392 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
63404422 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
63404452 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
63404480 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:63406912 original size:46 final size:46
Alignment explanation
Indices: 63406859--63407034 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
63406849 GATATTGGCA
63406859 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63406905 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
63406950 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
63406998 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63407035 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63406964 original size:93 final size:93
Alignment explanation
Indices: 63406855--63407026 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63406845 CTAGGATATT
* *
63406855 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
63406920 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
63406948 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
63407013 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
63407027 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:63411670 original size:55 final size:53
Alignment explanation
Indices: 63411603--63411740 Score: 159
Period size: 53 Copynumber: 2.6 Consensus size: 53
63411593 GCAAGAAAAT
* *
63411603 CATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAAGATCC
1 CATGTAAGACCATGTCAAGACATGGCAATGAT-AACTAC-ATAAGGCAAAGATAC
* * * * * * *
63411658 CATGTAAGACCATGCCAAGAAATGGCAATGGTGAGTTCATAAGGCAAGGATAC
1 CATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAAGATAC
* *
63411711 CACGTAAGGCCATGTCAAGACATGGCAATG
1 CATGTAAGACCATGTCAAGACATGGCAATG
63411741 GTAAGTTTAA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
53 39 0.56
54 3 0.04
55 28 0.40
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.20
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAAGATAC
Found at i:63411724 original size:53 final size:53
Alignment explanation
Indices: 63411544--63411747 Score: 158
Period size: 53 Copynumber: 3.8 Consensus size: 53
63411534 AGGGTTTAAG
* ** * * * *
63411544 GATACCAAGTAAGACCATGCCAAGGCATGGCATTTGTAAGTTTTACAAGGC-AA
1 GATACCACGTAAGACCATGCCAAGAAATGGCAATGGTAAG-TTCATAAGGCAAA
* * * * * * * * *
63411597 GAAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAA
1 G-ATACCACGTAAGACCATGCCAAGAAATGGCAATGGT-AAGTTC-ATAAGGCAAA
* * * *
63411653 GATCCCATGTAAGACCATGCCAAGAAATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCACGTAAGACCATGCCAAGAAATGGCAATGGTAAGTTCATAAGGCAAA
* * *
63411706 GATACCACGTAAGGCCATGTCAAGACATGGCAATGGTAAGTT
1 GATACCACGTAAGACCATGCCAAGAAATGGCAATGGTAAGTT
63411748 TAATTCCAAA
Statistics
Matches: 119, Mismatches: 28, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
53 46 0.39
54 33 0.28
55 37 0.31
56 3 0.03
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (53 bp):
GATACCACGTAAGACCATGCCAAGAAATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:63418461 original size:46 final size:46
Alignment explanation
Indices: 63418411--63418629 Score: 248
Period size: 46 Copynumber: 4.7 Consensus size: 46
63418401 TGATTGAGCA
63418411 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
*
63418457 TCCGAACTCGTTGCGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
63418503 TCCGAGCTCATTGAGTTGAGTCCGAG-T---TTGTGAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ATG
* * * *
63418548 CATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
63418596 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63418630 GGGGCGGGTT
Statistics
Matches: 147, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
42 4 0.03
43 6 0.04
45 3 0.02
46 97 0.66
47 25 0.17
48 3 0.02
50 5 0.03
51 4 0.03
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:63426021 original size:45 final size:45
Alignment explanation
Indices: 63425970--63426140 Score: 204
Period size: 45 Copynumber: 3.8 Consensus size: 45
63425960 TGGTTGAGCA
*
63425970 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAACG
* * * *
63426015 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAA--A--CG
* *
63426062 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAACG
*
63426108 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63426141 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 61 0.57
46 1 0.01
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAACG
Found at i:63426124 original size:92 final size:92
Alignment explanation
Indices: 63425967--63426135 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
63425957 GGATGGTTGA
*
63425967 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAACGTCCGAACTCGTTGAGTT
63426032 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
* * *
63426059 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAACGTCCGAACTCGTTGAGT
63426123 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
63426136 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 64 0.89
93 8 0.11
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAACGTCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63430096 original size:45 final size:45
Alignment explanation
Indices: 63429939--63430112 Score: 199
Period size: 45 Copynumber: 3.8 Consensus size: 45
63429929 ATTTGGGCAT
*
63429939 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *** * * *
63429984 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-T
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAACG
*
63430032 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
63430077 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63430113 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 16, Indels: 13
0.79 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 37 0.35
46 31 0.29
47 30 0.28
48 1 0.01
49 2 0.02
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:63433044 original size:15 final size:15
Alignment explanation
Indices: 63432998--63433047 Score: 82
Period size: 15 Copynumber: 3.3 Consensus size: 15
63432988 GTATCTTGGG
*
63432998 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
63433013 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
63433028 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
63433043 TTTCT
1 TTTCT
63433048 GGGTTTCTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.12, C:0.18, G:0.12, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:63433054 original size:23 final size:23
Alignment explanation
Indices: 63433021--63433070 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
63433011 GATCTCTTTA
*
63433021 TTCTGGATTTCTTTAT-TCTGGAT
1 TTCTGGATTTCTCTATCT-TGGAT
*
63433044 TTCTGGGTTTCTCTATCTTGGAT
1 TTCTGGATTTCTCTATCTTGGAT
63433067 TTCT
1 TTCT
63433071 TTATTCGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.10, C:0.16, G:0.18, T:0.56
Consensus pattern (23 bp):
TTCTGGATTTCTCTATCTTGGAT
Found at i:63435576 original size:47 final size:47
Alignment explanation
Indices: 63435457--63435629 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 47
63435447 GGGATATTTG
** *
63435457 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACAGATGGATACGA
* * * *
63435504 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACAGATGGATACGA
* ** *
63435550 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACAGATGGATACGA
* * *
63435597 -AC-GCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
63435630 TTATGGGCGG
Statistics
Matches: 106, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 30 0.28
46 39 0.37
47 37 0.35
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.27
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACAGATGGATACGA
Found at i:63435619 original size:45 final size:45
Alignment explanation
Indices: 63435462--63435635 Score: 208
Period size: 45 Copynumber: 3.8 Consensus size: 45
63435452 ATTTGGGCAT
*
63435462 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*** * * *
63435507 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-T
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAACG
*
63435555 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
63435600 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63435636 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 37 0.34
46 32 0.30
47 31 0.29
48 1 0.01
49 2 0.02
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:63438606 original size:31 final size:31
Alignment explanation
Indices: 63438568--63438631 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
63438558 CCTTTTCATA
63438568 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
63438599 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
63438630 TT
1 TT
63438632 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:63438874 original size:24 final size:24
Alignment explanation
Indices: 63438823--63438969 Score: 181
Period size: 24 Copynumber: 6.0 Consensus size: 24
63438813 GCTTTATCAT
*
63438823 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
63438848 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
63438872 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
63438895 ATAACTGGGGCATAAGCCGGCCCTTTTG
1 ATAACTGGGGCATAA----GCCCTTTTA
*
63438923 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
63438947 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63438970 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
23 15 0.14
24 61 0.55
25 12 0.11
27 8 0.07
28 15 0.14
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:63438932 original size:51 final size:52
Alignment explanation
Indices: 63438823--63438964 Score: 179
Period size: 51 Copynumber: 2.8 Consensus size: 52
63438813 GCTTTATCAT
*
63438823 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AA---AGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCAGCCCTTTCA
* **
63438872 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCGGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCAGCCCTTTCA
*
63438923 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCC
63438965 CTTTTTCACT
Statistics
Matches: 83, Mismatches: 4, Indels: 9
0.86 0.04 0.09
Matches are distributed among these distances:
47 12 0.14
48 11 0.13
49 12 0.14
51 30 0.36
52 18 0.22
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (52 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCAGCCCTTTCA
Found at i:63439045 original size:20 final size:20
Alignment explanation
Indices: 63439020--63439079 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
63439010 TATGATTACC
63439020 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
63439040 TCATGTGCATATCATATATT
1 TCATGTGCATATCATACATA
63439060 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
63439080 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.38
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:63439050 original size:11 final size:11
Alignment explanation
Indices: 63439020--63439074 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
63439010 TATGATTACC
63439020 TCATGTGCATA
1 TCATGTGCATA
*
63439031 TCA--TACATA
1 TCATGTGCATA
63439040 TCATGTGCATA
1 TCATGTGCATA
* *
63439051 TCATAT--ATT
1 TCATGTGCATA
63439060 TCATGTGCATA
1 TCATGTGCATA
63439071 TCAT
1 TCAT
63439075 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:63439154 original size:25 final size:25
Alignment explanation
Indices: 63439122--63439169 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63439112 ATACATAAAC
* * *
63439122 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63439147 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
63439170 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:63440970 original size:27 final size:27
Alignment explanation
Indices: 63440940--63441131 Score: 212
Period size: 27 Copynumber: 7.2 Consensus size: 27
63440930 TCGATTTTTG
* * *
63440940 AAATGACCATAATACCCTTGTAGCGTA
1 AAATGACCGTAATACCCTTATAGGGTA
* * * *
63440967 AAATGACTGTAATACCCCTGTAGGGTT
1 AAATGACCGTAATACCCTTATAGGGTA
*
63440994 AAATGACCGTAATATCCC-TATAGGGTT
1 AAATGACCGTAATA-CCCTTATAGGGTA
63441021 AAATGACCGTAATACCCTTATAGGGTA
1 AAATGACCGTAATACCCTTATAGGGTA
* *
63441048 AAATGACCGTAATGCCCCTATAGGGTA
1 AAATGACCGTAATACCCTTATAGGGTA
* * *
63441075 AGATGACCATAATACCCTTGTAGGGT-
1 AAATGACCGTAATACCCTTATAGGGTA
* *
63441101 --ATGACTGTAATACCCTTATATGGTA
1 AAATGACCGTAATACCCTTATAGGGTA
63441126 AAATGA
1 AAATGA
63441132 TGATTATGCC
Statistics
Matches: 141, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
24 20 0.14
26 3 0.02
27 115 0.82
28 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (27 bp):
AAATGACCGTAATACCCTTATAGGGTA
Found at i:63441049 original size:81 final size:80
Alignment explanation
Indices: 63440940--63441131 Score: 239
Period size: 81 Copynumber: 2.4 Consensus size: 80
63440930 TCGATTTTTG
* * * * * *
63440940 AAATGACCATAATACCCTTGTAGCGTAAAATGACTGTAATACCCCTGTAGGGTTAA-ATGACCGT
1 AAATGACCGTAATACCCTTATAGGGTAAAATGACCGTAATACCCCTATAGGG-TAAGATGACCAT
63441004 AATATCCC-TATAGGGTT
65 AATA-CCCTTATAGGG-T
*
63441021 AAATGACCGTAATACCCTTATAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAGATGACCATA
1 AAATGACCGTAATACCCTTATAGGGTAAAATGACCGTAATACCCCTATAGGGTAAGATGACCATA
*
63441086 ATACCCTTGTAGGGT
66 ATACCCTTATAGGGT
* *
63441101 --ATGACTGTAATACCCTTATATGGTAAAATGA
1 AAATGACCGTAATACCCTTATAGGGTAAAATGA
63441132 TGATTATGCC
Statistics
Matches: 99, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
78 29 0.29
80 7 0.07
81 63 0.64
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (80 bp):
AAATGACCGTAATACCCTTATAGGGTAAAATGACCGTAATACCCCTATAGGGTAAGATGACCATA
ATACCCTTATAGGGT
Found at i:63441303 original size:27 final size:27
Alignment explanation
Indices: 63441273--63441333 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
63441263 GGGAGTATTG
*
63441273 TACTGGTGACTATGTCACATTCACTGT
1 TACTGGTGACTATGCCACATTCACTGT
* * *
63441300 TACTGGTGGCTTTGCCACATTTACTGT
1 TACTGGTGACTATGCCACATTCACTGT
*
63441327 TTCTGGT
1 TACTGGT
63441334 AGCCATGCTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.41
Consensus pattern (27 bp):
TACTGGTGACTATGCCACATTCACTGT
Found at i:63441592 original size:33 final size:33
Alignment explanation
Indices: 63441506--63441592 Score: 120
Period size: 33 Copynumber: 2.6 Consensus size: 33
63441496 TACTACTATG
* * * * *
63441506 TAGGGCTAAGGCCTAGTCTGCATTGATACTGTA
1 TAGGGCTAAGGCCCAGACTGTACTGATACTGAA
63441539 TAGGGCTAAGGCCCAGACTGTACTGATACTGAA
1 TAGGGCTAAGGCCCAGACTGTACTGATACTGAA
*
63441572 TAGGGCTCAGGCCCAGACTGT
1 TAGGGCTAAGGCCCAGACTGT
63441593 TACCGATTTG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (33 bp):
TAGGGCTAAGGCCCAGACTGTACTGATACTGAA
Found at i:63445168 original size:38 final size:38
Alignment explanation
Indices: 63445126--63445200 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 38
63445116 ATATTTGGGT
* *
63445126 TAAATCCCGCAGGCTTCGTACTGGTATTATATCCGGGA
1 TAAATCCCGCAGGCCTAGTACTGGTATTATATCCGGGA
* * *
63445164 TAAATCTCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TAAATCCCGCAGGCCTAGTACTGGTATTATATCCGGG
63445201 CCTTCGTGCC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (38 bp):
TAAATCCCGCAGGCCTAGTACTGGTATTATATCCGGGA
Found at i:63445243 original size:43 final size:41
Alignment explanation
Indices: 63445181--63445261 Score: 126
Period size: 43 Copynumber: 1.9 Consensus size: 41
63445171 CGCAGGCCTA
63445181 GTGCTGGTATTATATTCGGGCCTTCGTGCCTAGAAGGCTTC
1 GTGCTGGTATTATATTCGGGCCTTCGTGCCTAGAAGGCTTC
* *
63445222 GTGCTGGTCATGTGTATTCGGGCCTTCGTGCCTAGCAGGC
1 GTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTAGAAGGC
63445262 GTAATGCCGG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 8 0.22
42 2 0.06
43 26 0.72
ACGTcount: A:0.12, C:0.23, G:0.32, T:0.32
Consensus pattern (41 bp):
GTGCTGGTATTATATTCGGGCCTTCGTGCCTAGAAGGCTTC
Found at i:63446972 original size:40 final size:40
Alignment explanation
Indices: 63446885--63447018 Score: 162
Period size: 42 Copynumber: 3.3 Consensus size: 40
63446875 GATATCTCGT
* * * * * *
63446885 ACACTAAGTGTCGTACATAGCC-AAACTATCTCAAATCGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCGC
* *
63446924 ACACTAAGTGCCATATATAGCCGAAGTTATGTCGAATTGC
1 ACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCGC
*
63446964 ACACTAAGTGCCATATATATAGCCGAAGCTATGTCGTATCGC
1 ACACTAAGTGCC--ATATATAGCCGAAGCTATGTCGAATCGC
63447006 ACACTAAGTGCCA
1 ACACTAAGTGCCA
63447019 CAGATAACTG
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 19 0.23
40 25 0.31
42 37 0.46
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (40 bp):
ACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCGC
Found at i:63447399 original size:21 final size:20
Alignment explanation
Indices: 63447375--63447415 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
63447365 ACTTACTTAA
*
63447375 CTATCAACAACCATTCATAAT
1 CTATCAACAAAC-TTCATAAT
*
63447396 CTATCAAGAAACTTCATAAT
1 CTATCAACAAACTTCATAAT
63447416 ACTCATGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.44, C:0.24, G:0.02, T:0.29
Consensus pattern (20 bp):
CTATCAACAAACTTCATAAT
Found at i:63449355 original size:39 final size:40
Alignment explanation
Indices: 63449177--63449359 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
63449167 CCGCACCAAG
* * * * * * * *
63449177 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
63449217 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
63449257 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
63449297 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
63449336 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
63449360 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:63457387 original size:39 final size:40
Alignment explanation
Indices: 63457209--63457391 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
63457199 CCGCACCAAG
* * * * * * * *
63457209 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
63457249 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
63457289 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
63457329 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
63457368 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
63457392 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:63461062 original size:16 final size:16
Alignment explanation
Indices: 63461022--63461071 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
63461012 ATGTATTAAA
*
63461022 AAAGGTTAAAAT-AGT
1 AAAGATTAAAATAAGT
63461037 AAA-ATGTAAAATAAGT
1 AAAGAT-TAAAATAAGT
63461053 AAAGATT-AAATAAAGT
1 AAAGATTAAAAT-AAGT
63461069 AAA
1 AAA
63461072 CCAAATTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
14 1 0.03
15 13 0.43
16 14 0.47
17 2 0.07
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (16 bp):
AAAGATTAAAATAAGT
Found at i:63461961 original size:43 final size:43
Alignment explanation
Indices: 63461913--63462079 Score: 144
Period size: 43 Copynumber: 3.9 Consensus size: 43
63461903 GATTAACGAG
*
63461913 ATGTGATTATATGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATT
* * * * * * *
63461956 ATGTGATTACGTGTAAGACTATGTTTAGGATAGTGGCATCGTT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATT
* * * *
63461999 ATTTGATTTCGTGTAAGACCATAG-CTGGG-CTATCGGCATCGA-T
1 ATGTGATTACATGTAAGACCAT-GTCTGGGAC-ATTGGCATC-ATT
* * *
63462042 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
63462080 TGTAAGAGCT
Statistics
Matches: 95, Mismatches: 24, Indels: 11
0.73 0.18 0.08
Matches are distributed among these distances:
42 5 0.05
43 89 0.94
44 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATT
Found at i:63463598 original size:43 final size:43
Alignment explanation
Indices: 63463549--63463827 Score: 380
Period size: 43 Copynumber: 6.5 Consensus size: 43
63463539 ATGTGTGTGT
63463549 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAC
* * * *
63463592 GTGTAAGACCATGTCTAGGACGTTGGAATCGATATGTGATTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAC
** *
63463635 GTGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGATTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAC
* *
63463678 GTGTAAGACCACGTCTGGAACGTTGGCATCGATATGTGATTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAC
*
63463721 GTGTAAGACCACGTCTGGGACATTAGCATCGATATGTGATTAC
1 GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAC
* ** * *
63463764 ATGTAAGACC-CTGTCTCAGACAGTAGCATCGATATGTGATTAC
1 GTGTAAGACCAC-GTCTGGGACATTGGCATCGATATGTGATTAC
* * *
63463807 ATGTAAGACCATGTTTGGGAC
1 GTGTAAGACCACGTCTGGGAC
63463828 GCTGGCATTG
Statistics
Matches: 213, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
42 1 0.00
43 212 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTAC
Found at i:63473258 original size:43 final size:43
Alignment explanation
Indices: 63473210--63473293 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
63473200 GGATTAACGA
** *
63473210 TATGTGATTATGTGTAAGACCATGTCT-GGAACATTGGCATCAT
1 TATGTGATTACATGTAAGACAATGTCTAGG-ACATTGGCATCAT
63473253 TATGTGATTACATGTAAGACAATGTCTAGGACATTGGCATC
1 TATGTGATTACATGTAAGACAATGTCTAGGACATTGGCATC
63473294 GTAAGACCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 35 0.95
44 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (43 bp):
TATGTGATTACATGTAAGACAATGTCTAGGACATTGGCATCAT
Found at i:63473306 original size:28 final size:28
Alignment explanation
Indices: 63473266--63473323 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
63473256 GTGATTACAT
*
63473266 GTAAGACAATGTCTAGGACATTGGCATC
1 GTAAGACAATGTCAAGGACATTGGCATC
*
63473294 GTAAGACCATGTCAAGGACATTGGCATC
1 GTAAGACAATGTCAAGGACATTGGCATC
63473322 GT
1 GT
63473324 TATTTGATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (28 bp):
GTAAGACAATGTCAAGGACATTGGCATC
Found at i:63473363 original size:71 final size:71
Alignment explanation
Indices: 63473223--63473364 Score: 173
Period size: 71 Copynumber: 2.0 Consensus size: 71
63473213 GTGATTATGT
* *
63473223 GTAAGACCATGTCTGGAACATTGGCATCATTATGTGATTACATGTAAGACAATGTCTAGGACATT
1 GTAAGACCATGTCAGGAACATTGGCATCATTATGTGATTACATGTAAGACAATGTCTAGGACATC
63473288 GGCATC
66 GGCATC
* * * * *
63473294 GTAAGACCATGTCAAGG-ACATTGGCATCGTTATTTGATTTCGTGTAAGACCATAG-CTAGG-CT
1 GTAAGACCATGTC-AGGAACATTGGCATCATTATGTGATTACATGTAAGACAAT-GTCTAGGAC-
63473356 ATCGGCATC
63 ATCGGCATC
63473365 AATATGTGAT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
70 1 0.02
71 57 0.93
72 3 0.05
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (71 bp):
GTAAGACCATGTCAGGAACATTGGCATCATTATGTGATTACATGTAAGACAATGTCTAGGACATC
GGCATC
Found at i:63477169 original size:27 final size:28
Alignment explanation
Indices: 63477139--63477238 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
63477129 ATAGTGAGTC
63477139 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
63477166 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
63477194 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
63477225 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63477239 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:63484975 original size:7 final size:7
Alignment explanation
Indices: 63484965--63484989 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
63484955 TCATCACCAC
63484965 AACATCA
1 AACATCA
63484972 AACATCA
1 AACATCA
63484979 AACATCA
1 AACATCA
63484986 AACA
1 AACA
63484990 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:63485864 original size:25 final size:25
Alignment explanation
Indices: 63485830--63485882 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
63485820 AGAAGTTCGT
63485830 AGTGTCTGTACCTTGTTCTAAATGC
1 AGTGTCTGTACCTTGTTCTAAATGC
63485855 AGTGTCTGTACCTTGTTCTAAATGC
1 AGTGTCTGTACCTTGTTCTAAATGC
63485880 AGT
1 AGT
63485883 CTTTGGCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (25 bp):
AGTGTCTGTACCTTGTTCTAAATGC
Found at i:63487288 original size:13 final size:15
Alignment explanation
Indices: 63487270--63487301 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
63487260 TTTACTCATC
63487270 AATCTCTT-CCTC-G
1 AATCTCTTACCTCTG
63487283 AATCTCTTACCTCTG
1 AATCTCTTACCTCTG
63487298 AATC
1 AATC
63487302 AGCCTTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.22, C:0.34, G:0.06, T:0.38
Consensus pattern (15 bp):
AATCTCTTACCTCTG
Found at i:63490081 original size:43 final size:43
Alignment explanation
Indices: 63489991--63490081 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
63489981 TACTAAGATG
* * * *
63489991 TGATTACATGTAATACCATGTTTGGGACATTGGCATTGTATTG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
*
63490034 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-TGTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TA
63490077 TGATT
1 TGATT
63490082 TTGTATAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 1 0.02
43 41 0.98
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.37
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
Found at i:63493301 original size:29 final size:29
Alignment explanation
Indices: 63493269--63493403 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
63493259 ATACCCTCCG
** * *
63493269 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
63493298 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
63493327 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
63493356 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
63493385 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
63493404 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:63493336 original size:58 final size:58
Alignment explanation
Indices: 63493215--63493404 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
63493205 CTACTCATTT
* * * *** *
63493215 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
63493273 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
63493331 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
63493389 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
63493405 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:63501699 original size:37 final size:36
Alignment explanation
Indices: 63501649--63501735 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
63501639 TACGAAGTCT
63501649 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
63501685 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
63501722 TCACCCGGAACATA
1 T-ACCCGG-ACATA
63501736 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:63501867 original size:49 final size:49
Alignment explanation
Indices: 63501804--63502066 Score: 400
Period size: 49 Copynumber: 5.4 Consensus size: 49
63501794 TTTACCACAT
* * *
63501804 ATATATATACACTTTCACATTCATCACATCAGCGATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
63501853 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
63501902 ATATATATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
63501951 ATATACATATACTTTCACATTCATCCCATTGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
63502000 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
63502049 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
63502067 GAATCTTGAT
Statistics
Matches: 198, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 198 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:63504827 original size:40 final size:40
Alignment explanation
Indices: 63504783--63504926 Score: 220
Period size: 40 Copynumber: 3.6 Consensus size: 40
63504773 CCAGCATGAT
* * *
63504783 TGCTCTTCAGG-ACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTC-GGAACTTAGTCCGGATACATCACTAGCACGAA
63504823 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
63504863 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
63504903 TGCTCCTCGGAACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
63504927 TAACCACAAG
Statistics
Matches: 99, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 9 0.09
40 90 0.91
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:63504987 original size:40 final size:40
Alignment explanation
Indices: 63504811--63505047 Score: 144
Period size: 40 Copynumber: 5.9 Consensus size: 40
63504801 CCGGATGCAT
* ** * * *
63504811 CACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACAT-
1 CACTAGCACAAATGC-CTTCGGGTCTTAGCCCGGGTATATA
* * ** * * *
63504851 CACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACAT-
1 CACTAGCACAAATGC-CTTCGGGTCTTAGCCCGGGTATATA
* * ** *
63504891 CACTAGCACGAATGCTCCTCGGAACTTAG-CCGGATATA-A
1 CACTAGCACAAATGC-CTTCGGGTCTTAGCCCGGGTATATA
* * * *
63504930 CCACAAGAACAATTGCCTTCGGGTCTTAACCCGGGTATA-A
1 -CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGGTATATA
* *
63504970 CAACTCA-CACAAATGCCTTCGGGTCTTAGCCCGGATATATT
1 C-ACT-AGCACAAATGCCTTCGGGTCTTAGCCCGGGTATATA
* *
63505011 CACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGGTAT
63505048 CATTCAAATG
Statistics
Matches: 170, Mismatches: 20, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
39 19 0.11
40 149 0.88
41 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CACTAGCACAAATGCCTTCGGGTCTTAGCCCGGGTATATA
Found at i:63506952 original size:37 final size:36
Alignment explanation
Indices: 63506902--63506988 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
63506892 TACGAAGTCT
63506902 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
63506938 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
63506975 TCACCCGGAACATA
1 T-ACCCGG-ACATA
63506989 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:63507126 original size:49 final size:49
Alignment explanation
Indices: 63507057--63507414 Score: 555
Period size: 49 Copynumber: 7.4 Consensus size: 49
63507047 TTTACCACAT
*
63507057 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
63507106 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
63507155 ATATATATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
63507204 ATATACATATACTTTCACATTCATC-C--CGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
63507250 ATATATATACA-TTTCCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTT-CACATTCATCACATCGGCCATTAGGCCTTATCAC
63507299 ATATACATACA-TTTCCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTT-CACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
63507348 ATATACATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
63507397 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
63507415 GAATCTTGAT
Statistics
Matches: 291, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
45 3 0.01
46 38 0.13
47 1 0.00
48 1 0.00
49 245 0.84
50 3 0.01
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:63511746 original size:40 final size:39
Alignment explanation
Indices: 63511570--63511779 Score: 307
Period size: 39 Copynumber: 5.3 Consensus size: 39
63511560 GGACTAAGAT
* * *
63511570 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
63511609 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
63511648 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
*
63511687 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-C
* * *
63511727 CCGAAGGCATTCGTACGAGTTACTATAA-CCAGGGTT-TGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGGTTAAG-C
63511767 CCGAAGGCATTTG
1 CCGAAGGCATTTG
63511780 AGCAAGTCGT
Statistics
Matches: 160, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 112 0.70
40 41 0.26
41 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGC
Found at i:63514151 original size:27 final size:27
Alignment explanation
Indices: 63514096--63514205 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
63514086 AGCACGGCTG
* **
63514096 CCAGAACAGATAA-TGTGACAGAGTTA
1 CCAGAACAGATAATTGTGGCAGAGCCA
63514122 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
63514149 CCAGAACAGAT-ATATGTAGTAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
63514176 CCAGATCAGATAGTTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
63514203 CCA
1 CCA
63514206 TGACGCTTCC
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
26 15 0.21
27 55 0.77
28 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:63514187 original size:54 final size:53
Alignment explanation
Indices: 63514096--63514205 Score: 141
Period size: 54 Copynumber: 2.1 Consensus size: 53
63514086 AGCACGGCTG
**
63514096 CCAGAACAGATAATGTGACAGAGTTACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTGTGGCAGAGCCA
* * * *
63514149 CCAGAACAGATATATGT-AGTAGAGCCACCAGATCAGATAGTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGA-CAGAGCCACCAGAACAGATAATTGTGGCAGAGCCA
63514203 CCA
1 CCA
63514206 TGACGCTTCC
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
53 13 0.27
54 36 0.73
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTGTGGCAGAGCCA
Found at i:63519253 original size:34 final size:34
Alignment explanation
Indices: 63519202--63519285 Score: 89
Period size: 34 Copynumber: 2.5 Consensus size: 34
63519192 GCAGTGTAAA
* * *
63519202 CAGTCTGGGCCTAAGCCC-TTATCAGTAGCAATAT
1 CAGTATGGGCCTTAGCCCATTA-CAGTAACAATAT
*
63519236 CAGTATGGGCCTTAGCCCATTACAGTAACAGTAT
1 CAGTATGGGCCTTAGCCCATTACAGTAACAATAT
* * *
63519270 CAATGTGGACCTTAGC
1 CAGTATGGGCCTTAGC
63519286 GTAATTCAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
34 39 0.93
35 3 0.07
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (34 bp):
CAGTATGGGCCTTAGCCCATTACAGTAACAATAT
Found at i:63523335 original size:27 final size:27
Alignment explanation
Indices: 63523305--63523358 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
63523295 TCATACAACC
* *
63523305 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
63523332 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
63523359 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:63526235 original size:93 final size:93
Alignment explanation
Indices: 63526123--63526293 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
63526113 GCCCATAAGT
* *
63526123 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63526188 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
63526216 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63526281 CGAGTTCGGATGC
66 CGAGTTCGGATGC
63526294 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:63526309 original size:46 final size:46
Alignment explanation
Indices: 63526115--63526295 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
63526105 TGTAACCCGC
* * *
63526115 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
63526161 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
63526211 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
63526254 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
63526296 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:63526495 original size:11 final size:11
Alignment explanation
Indices: 63526474--63526502 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
63526464 AATTCAGCAT
63526474 AAAATAA-TTA
1 AAAATAACTTA
63526484 AAAATAACTTA
1 AAAATAACTTA
63526495 AAAATAAC
1 AAAATAAC
63526503 AATTATGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAATAACTTA
Found at i:63528680 original size:29 final size:29
Alignment explanation
Indices: 63528641--63528728 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
63528631 CAAAGATAAC
*
63528641 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
63528670 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
63528699 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
63528729 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:63528699 original size:15 final size:15
Alignment explanation
Indices: 63528641--63528719 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
63528631 CAAAGATAAC
*
63528641 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
63528655 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
63528670 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
63528684 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
63528699 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
63528714 AAGAAA
1 AAGAAA
63528720 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:63528728 original size:15 final size:15
Alignment explanation
Indices: 63528652--63528728 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
63528642 AGAAAACCGA
63528652 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
63528667 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
63528681 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
63528695 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
63528711 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
63528726 ATA
1 ATA
63528729 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:63531736 original size:93 final size:93
Alignment explanation
Indices: 63531624--63531795 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63531614 GCCCATAAGT
* *
63531624 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63531689 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
63531717 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
63531782 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
63531796 CAAATCCTAG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:63531791 original size:46 final size:46
Alignment explanation
Indices: 63531616--63531791 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
63531606 TGTAACCCGC
* * *
63531616 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
63531662 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
63531712 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
63531755 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
63531792 TGCCCAAATC
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:63533731 original size:29 final size:28
Alignment explanation
Indices: 63533643--63533745 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
63533633 TACTCAATCA
** *
63533643 CGCACACTTAGTGCCACGCGATTCAAGCC
1 CGCACACTTAGTGCCATAC-ATTCAAGCT
* * * *
63533672 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
*
63533701 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
*
63533730 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
63533746 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
28 2 0.03
29 56 0.97
ACGTcount: A:0.28, C:0.35, G:0.17, T:0.19
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:63538942 original size:58 final size:57
Alignment explanation
Indices: 63538852--63538966 Score: 151
Period size: 58 Copynumber: 2.0 Consensus size: 57
63538842 TTTTGGCCTC
* * * *
63538852 ATTACAGAAAGGATTTAGCCTGGACTGGTAATCTTGATGTAAGCCCTCT-TGAGCATAT
1 ATTACAGAAAGGATTTAGCCCGAACAGGTAATCCTGAT-TAAGCCCT-TATGAGCATAT
* *
63538910 ATTACAGATAGGATTTAGCCCGAACAGGTAATCCTGATTAAGCTCTTATGAGCATAT
1 ATTACAGAAAGGATTTAGCCCGAACAGGTAATCCTGATTAAGCCCTTATGAGCATAT
63538967 GTTGGAAACA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
56 1 0.02
57 16 0.32
58 33 0.66
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (57 bp):
ATTACAGAAAGGATTTAGCCCGAACAGGTAATCCTGATTAAGCCCTTATGAGCATAT
Found at i:63538980 original size:57 final size:58
Alignment explanation
Indices: 63538852--63538985 Score: 130
Period size: 58 Copynumber: 2.3 Consensus size: 58
63538842 TTTTGGCCTC
* * * *
63538852 ATTACAGAA-AGGATTTAGCCTGGACTGGTAATCTTGATGTAAGCCCTCTTGAGCATAT
1 ATTACA-AACAGGATTTAGCCCGAACAGGTAATCCTGATGTAAGCCCTCTTGAGCATAT
* * *
63538910 ATTACAGATAGGATTTAGCCCGAACAGGTAATCCTGAT-TAAGCTCT-TATGAGCATAT
1 ATTACAAACAGGATTTAGCCCGAACAGGTAATCCTGATGTAAGCCCTCT-TGAGCATAT
* ** *
63538967 GTTGGAAACAGGATGTAGC
1 ATTACAAACAGGATTTAGC
63538986 TTGGACAAGT
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
56 1 0.02
57 30 0.48
58 31 0.50
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.29
Consensus pattern (58 bp):
ATTACAAACAGGATTTAGCCCGAACAGGTAATCCTGATGTAAGCCCTCTTGAGCATAT
Found at i:63540660 original size:36 final size:36
Alignment explanation
Indices: 63540613--63540685 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
63540603 CTTACTTTGT
63540613 TTAATTTTTGATGTTTTATAGTTTTGTGAAGCTAGC
1 TTAATTTTTGATGTTTTATAGTTTTGTGAAGCTAGC
*
63540649 TTAATTTTTGATGTTTTATAGTTTTGTGTAGCTAGC
1 TTAATTTTTGATGTTTTATAGTTTTGTGAAGCTAGC
63540685 T
1 T
63540686 CGAATCTAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.21, C:0.05, G:0.19, T:0.55
Consensus pattern (36 bp):
TTAATTTTTGATGTTTTATAGTTTTGTGAAGCTAGC
Found at i:63542485 original size:80 final size:80
Alignment explanation
Indices: 63542401--63542549 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
63542391 TATGGTAACC
* * * *
63542401 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
63542465 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
63542481 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
63542546 CCGG
66 CCGG
63542550 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:63542491 original size:40 final size:38
Alignment explanation
Indices: 63542442--63542549 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
63542432 ATCACGATTT
*
63542442 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
63542482 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
63542522 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
63542550 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:63550602 original size:80 final size:80
Alignment explanation
Indices: 63550518--63550666 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
63550508 TATGGTAACC
* * * *
63550518 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
63550582 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
63550598 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
63550663 CCGG
66 CCGG
63550667 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:63550608 original size:40 final size:38
Alignment explanation
Indices: 63550559--63550666 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
63550549 ATCACGATTT
*
63550559 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
63550599 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
63550639 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
63550667 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:63560426 original size:39 final size:40
Alignment explanation
Indices: 63560372--63560526 Score: 170
Period size: 39 Copynumber: 3.9 Consensus size: 40
63560362 TATGTATGAA
* *
63560372 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAGT
1 TGTGCGAATTATGATATCCGGGCTAAGTCCCGAAGGCAAT
*
63560411 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAATTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* * * **
63560450 TGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGCCTT
1 TGTGCGAATTATGATATCCGGGCTAAGTCCCGAAGGCAAT
** ** * *
63560490 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAATTATGATATCCGGGCTAAGTCCCGAAGGC
63560527 GTTTGAACGA
Statistics
Matches: 97, Mismatches: 18, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
39 59 0.61
40 38 0.39
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.25
Consensus pattern (40 bp):
TGTGCGAATTATGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:63560511 original size:79 final size:79
Alignment explanation
Indices: 63560372--63560526 Score: 213
Period size: 79 Copynumber: 2.0 Consensus size: 79
63560362 TATGTATGAA
* ** *
63560372 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAGTTGTGCGAGTTATGATATCCGGGCTAA
1 TGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGCAGTTGTGCGAGTTACCATAACCGGGCTAA
63560437 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* ** *
63560450 TGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTACCATAACCGGGCTA
1 TGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGCAGTTGTGCGAGTTACCATAACCGGGCTA
*
63560515 TGTCCCGAAGGC
65 AGTCCCGAAGGC
63560527 GTTTGAACGA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.48
80 9 0.14
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.25
Consensus pattern (79 bp):
TGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGCAGTTGTGCGAGTTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:63564723 original size:34 final size:34
Alignment explanation
Indices: 63564685--63564751 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
63564675 ATTGCCACAA
*
63564685 CTACTGTTACTAAAATGGGCTAAGGCCCAGACTG
1 CTACTATTACTAAAATGGGCTAAGGCCCAGACTG
* * *
63564719 CTACTATTACTGATATGGGCTTAGGCCCAGACT
1 CTACTATTACTAAAATGGGCTAAGGCCCAGACT
63564752 ATTTTGTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (34 bp):
CTACTATTACTAAAATGGGCTAAGGCCCAGACTG
Found at i:63571889 original size:25 final size:27
Alignment explanation
Indices: 63571852--63571904 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
63571842 TCAAACATGC
63571852 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
63571878 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
63571904 A
1 A
63571905 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:63581370 original size:27 final size:27
Alignment explanation
Indices: 63581340--63581516 Score: 142
Period size: 27 Copynumber: 6.6 Consensus size: 27
63581330 GTAGGGTAGC
* *
63581340 ATTACTAAAATACCCTTGGTTTATAAA
1 ATTACTAAAATACCCCTGGTTTGTAAA
63581367 ATTA-TAAAAATACCCCTGGTTTGTAAA
1 ATTACT-AAAATACCCCTGGTTTGTAAA
* *
63581394 ATTACCAAAATACCCCTAGTTTGTAAA
1 ATTACTAAAATACCCCTGGTTTGTAAA
* * * * *
63581421 ATTACCAAAATATCGCTGATTTGTGAA
1 ATTACTAAAATACCCCTGGTTTGTAAA
* * ***
63581448 ATTACTGAAATACCCTTGACCTGTAAA
1 ATTACTAAAATACCCCTGGTTTGTAAA
* * **
63581475 ACTACTGAAATA-CCCTCGACTTGTAAA
1 ATTACTAAAATACCCCT-GGTTTGTAAA
* *
63581502 ATTACCAAAGTACCC
1 ATTACTAAAATACCC
63581517 TCAATTTACA
Statistics
Matches: 122, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
26 4 0.03
27 116 0.95
28 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
ATTACTAAAATACCCCTGGTTTGTAAA
Found at i:63581529 original size:27 final size:27
Alignment explanation
Indices: 63581499--63581558 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
63581489 CTCGACTTGT
63581499 AAAATTACCAAAGTACCCTCAATTTAC
1 AAAATTACCAAAGTACCCTCAATTTAC
****
63581526 AAAATTACCGCTTTACCCTCAATTTAC
1 AAAATTACCAAAGTACCCTCAATTTAC
63581553 AAAATT
1 AAAATT
63581559 GTCTAAATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.42, C:0.25, G:0.03, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAGTACCCTCAATTTAC
Found at i:63581569 original size:27 final size:27
Alignment explanation
Indices: 63581472--63581558 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
63581462 CTTGACCTGT
* * * * **
63581472 AAAACTACTGAAATACCCTCGACTTGT
1 AAAATTACCGAAATACCCTCAATTTAC
63581499 AAAATTACC-AAAGTACCCTCAATTTAC
1 AAAATTACCGAAA-TACCCTCAATTTAC
***
63581526 AAAATTACCGCTTTACCCTCAATTTAC
1 AAAATTACCGAAATACCCTCAATTTAC
63581553 AAAATT
1 AAAATT
63581559 GTCTAAATAC
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.06
27 46 0.94
ACGTcount: A:0.40, C:0.25, G:0.06, T:0.29
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTCAATTTAC
Found at i:63581621 original size:54 final size:58
Alignment explanation
Indices: 63581563--63581675 Score: 144
Period size: 62 Copynumber: 1.9 Consensus size: 58
63581553 AAAATTGTCT
*
63581563 AAATACCTTTATAGGGTAG-A-A-T-TACCGAAATACCCCTGTAGGGTAGAATTATCA
1 AAATACCCTTATAGGGTAGAATATTATACCGAAATACCCCTGTAGGGTAGAATTATCA
*
63581617 AAATACCCTTGTAGGGTAGAAATATTGAAATACCGAAATACCCCTGTAGGGTAGAATTA
1 AAATACCCTTATAGGGTAG-AATATT---ATACCGAAATACCCCTGTAGGGTAGAATTA
63581676 CGGAGATACC
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
54 17 0.35
56 1 0.02
57 1 0.02
58 1 0.02
62 29 0.59
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (58 bp):
AAATACCCTTATAGGGTAGAATATTATACCGAAATACCCCTGTAGGGTAGAATTATCA
Found at i:63581647 original size:27 final size:27
Alignment explanation
Indices: 63581563--63581650 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 27
63581553 AAAATTGTCT
* * *
63581563 AAATACCTTTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTATCG
* *
63581590 AAATACCCCTGTAGGGTAGAATTATCA
1 AAATACCCTTGTAGGGTAGAATTATCG
* *
63581617 AAATACCCTTGTAGGGTAGAAATATTG
1 AAATACCCTTGTAGGGTAGAATTATCG
63581644 AAATACC
1 AAATACC
63581651 GAAATACCCC
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTATCG
Found at i:63581685 original size:35 final size:35
Alignment explanation
Indices: 63581617--63581685 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
63581607 AGAATTATCA
* **
63581617 AAATACCCTTGTAGGGTAGAAATATTGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACGGAAATACCG
* *
63581652 AAATACCCCTGTAGGGTAGAATTACGGAGATACC
1 AAATACCCCTGTAGGGTAGAAATACGGAAATACC
63581686 CTTATGGGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (35 bp):
AAATACCCCTGTAGGGTAGAAATACGGAAATACCG
Found at i:63581696 original size:62 final size:61
Alignment explanation
Indices: 63581585--63581700 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 61
63581575 AGGGTAGAAT
*
63581585 TACCGAAATACCCCTGTAGGGTAGAATTATCAAAATACCCTTGTAGGGTAGAAATATTGAAA
1 TACCGAAATACCCCTGTAGGGTAGAATTATCAAAATACCCTTATAGGGTA-AAATATTGAAA
* * *
63581647 TACCGAAATACCCCTGTAGGGTAGAATTA-CGGAGATACCCTTATGGGGTAAAAT
1 TACCGAAATACCCCTGTAGGGTAGAATTATC-AAAATACCCTTATAGGGTAAAAT
63581701 TACCATTTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
61 5 0.10
62 44 0.90
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (61 bp):
TACCGAAATACCCCTGTAGGGTAGAATTATCAAAATACCCTTATAGGGTAAAATATTGAAA
Found at i:63582122 original size:22 final size:22
Alignment explanation
Indices: 63582097--63582145 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
63582087 ATGACTTTGC
63582097 GCCAACCT-ACATATGGCTCTGT
1 GCCAACCTGA-ATATGGCTCTGT
* *
63582119 GCCAACCTGATTATGGCTGTGT
1 GCCAACCTGAATATGGCTCTGT
63582141 GCCAA
1 GCCAA
63582146 ACGTATTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 23 0.96
23 1 0.04
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (22 bp):
GCCAACCTGAATATGGCTCTGT
Found at i:63582356 original size:27 final size:27
Alignment explanation
Indices: 63582303--63582363 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
63582293 TATTCTGTTA
* * *
63582303 AGTGGCTTTGCCACATTATCTGTTTCT
1 AGTGGCTATGCCACAATATCTGATTCT
63582330 AGTGGCTATGCCACAAATATCT-ATTCT
1 AGTGGCTATGCCAC-AATATCTGATTCT
*
63582357 GGTGGCT
1 AGTGGCT
63582364 CCATCACAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 23 0.79
28 6 0.21
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
AGTGGCTATGCCACAATATCTGATTCT
Found at i:63582568 original size:6 final size:6
Alignment explanation
Indices: 63582557--63582709 Score: 73
Period size: 6 Copynumber: 24.8 Consensus size: 6
63582547 TTACCTAATA
* * *
63582557 CTGATT CTGATT CTG-TCAC CTAATT CTGATT CTAATT CTGATT CTGATT
1 CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGATT
* * * * * *
63582606 ATG-TT ACCTGATA CTAATT CTGATT CTG-TCA CATAATT TTGATT CTGATT
1 CTGATT --CTGATT CTGATT CTGATT CTGAT-T C-TGATT CTGATT CTGATT
* * * *
63582656 CTGATT CT-ATCAC CTGATT CTGATT TTGATT CTCATT TTGATT CT-AGTT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGATT CTGA-TT
63582705 CTGAT
1 CTGAT
63582710 ATTGTTTCTT
Statistics
Matches: 107, Mismatches: 26, Indels: 28
0.66 0.16 0.17
Matches are distributed among these distances:
5 7 0.07
6 87 0.81
7 8 0.07
8 5 0.05
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:63582569 original size:25 final size:25
Alignment explanation
Indices: 63582535--63582596 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
63582525 TCACATTCTA
*
63582535 ATTCTAATTCTGTTACCTAATACTG
1 ATTCTAATTCTGTCACCTAATACTG
* *
63582560 ATTCTGATTCTGTCACCTAATTCTG
1 ATTCTAATTCTGTCACCTAATACTG
63582585 ATTCTAATTCTG
1 ATTCTAATTCTG
63582597 ATTCTGATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.45
Consensus pattern (25 bp):
ATTCTAATTCTGTCACCTAATACTG
Found at i:63582592 original size:37 final size:37
Alignment explanation
Indices: 63582538--63582614 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
63582528 CATTCTAATT
*
63582538 CTAATTCTGTTACCTAATACTGATTCTGATTCTGTCAC
1 CTAATTCTGTTA-CTAATACTGATTCTGATTATGTCAC
* *
63582576 CTAATTCTGATT-CTAATTCTGATTCTGATTATGTTAC
1 CTAATTCTG-TTACTAATACTGATTCTGATTATGTCAC
63582613 CT
1 CT
63582615 GATACTAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
37 24 0.69
38 9 0.26
39 2 0.06
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.45
Consensus pattern (37 bp):
CTAATTCTGTTACTAATACTGATTCTGATTATGTCAC
Found at i:63582595 original size:31 final size:31
Alignment explanation
Indices: 63582560--63582680 Score: 127
Period size: 31 Copynumber: 3.9 Consensus size: 31
63582550 CCTAATACTG
63582560 ATTCTGATTCTGTCACCTAATTCTGATTCTA
1 ATTCTGATTCTGTCACCTAATTCTGATTCTA
* ** * * *
63582591 ATTCTGATTCTGATTATGTTA-CCTGATACTA
1 ATTCTGATTCTG-TCACCTAATTCTGATTCTA
* * *
63582622 ATTCTGATTCTGTCACATAATTTTGATTCTG
1 ATTCTGATTCTGTCACCTAATTCTGATTCTA
* *
63582653 ATTCTGATTCTATCACCTGATTCTGATT
1 ATTCTGATTCTGTCACCTAATTCTGATT
63582681 TTGATTCTCA
Statistics
Matches: 70, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
30 4 0.06
31 62 0.89
32 4 0.06
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (31 bp):
ATTCTGATTCTGTCACCTAATTCTGATTCTA
Found at i:63582626 original size:37 final size:37
Alignment explanation
Indices: 63582551--63582633 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
63582541 ATTCTGTTAC
* * * *
63582551 CTAATACTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTAATTCTGATTCTGATTATGTCACCTAATACTAATT
* *
63582588 CTAATTCTGATTCTGATTATGTTACCTGATACTAATT
1 CTAATTCTGATTCTGATTATGTCACCTAATACTAATT
*
63582625 CTGATTCTG
1 CTAATTCTG
63582634 TCACATAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.12, T:0.45
Consensus pattern (37 bp):
CTAATTCTGATTCTGATTATGTCACCTAATACTAATT
Found at i:63582626 original size:62 final size:62
Alignment explanation
Indices: 63582529--63582664 Score: 200
Period size: 62 Copynumber: 2.2 Consensus size: 62
63582519 TTGCATTCAC
* * * *
63582529 ATTCTAATTCTAATTCTGTTACCTAATACTGATTCTGATTCTGTCACCTAATTCTGATTCTA
1 ATTCTGATTCTAATTATGTTACCTAATACTAATTCTGATTCTGTCACATAATTCTGATTCTA
* * * *
63582591 ATTCTGATTCTGATTATGTTACCTGATACTAATTCTGATTCTGTCACATAATTTTGATTCTG
1 ATTCTGATTCTAATTATGTTACCTAATACTAATTCTGATTCTGTCACATAATTCTGATTCTA
63582653 ATTCTGATTCTA
1 ATTCTGATTCTA
63582665 TCACCTGATT
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.25, C:0.18, G:0.10, T:0.46
Consensus pattern (62 bp):
ATTCTGATTCTAATTATGTTACCTAATACTAATTCTGATTCTGTCACATAATTCTGATTCTA
Found at i:63584615 original size:27 final size:27
Alignment explanation
Indices: 63584574--63584629 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
63584564 ATCTCATATC
* *
63584574 TGTAGGCTAGTATTACTAAAATGCCCT
1 TGTAGGCTAGAATTACTAAAATACCCT
*
63584601 TGTAGGGTAGAATTACTAAAATACCCT
1 TGTAGGCTAGAATTACTAAAATACCCT
63584628 TG
1 TG
63584630 GTTTTTAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (27 bp):
TGTAGGCTAGAATTACTAAAATACCCT
Found at i:63584641 original size:27 final size:27
Alignment explanation
Indices: 63584611--63584761 Score: 187
Period size: 27 Copynumber: 5.6 Consensus size: 27
63584601 TGTAGGGTAG
* * * *
63584611 AATTACTAAAATACCCTTGGTTTTTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
63584638 AATTGCCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
63584665 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
63584692 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
63584719 AATTACCAAAATA-TCCTCGACTTGTAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
*
63584746 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
63584762 TCGACCTATA
Statistics
Matches: 109, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
26 3 0.03
27 105 0.96
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:63584763 original size:27 final size:27
Alignment explanation
Indices: 63584611--63584843 Score: 157
Period size: 27 Copynumber: 8.6 Consensus size: 27
63584601 TGTAGGGTAG
* * ** *
63584611 AATTACTAAAATACCCTTGGTTTTTAA
1 AATTACCAAAATACCCTCGACTTGTAA
* **
63584638 AATTGCCAAAATACCC-CTGGTTTGTAA
1 AATTACCAAAATACCCTC-GACTTGTAA
* *
63584665 AATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCTCGA-CTTGTAA
* *
63584692 AATTACCAAAATACCC-CTAATTTGTAA
1 AATTACCAAAATACCCTC-GACTTGTAA
*
63584719 AATTACCAAAATATCCTCGACTTGTAA
1 AATTACCAAAATACCCTCGACTTGTAA
* * *
63584746 AATTACCAAAGTACCCTCGACCTATAA
1 AATTACCAAAATACCCTCGACTTGTAA
* * * * * *
63584773 AATTACCAAAGTATCCTCAATTTATAG
1 AATTACCAAAATACCCTCGACTTGTAA
*** * **
63584800 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCAAAATACCCTCGACTTGTAA
*
63584827 AATTATCAAAATACCCT
1 AATTACCAAAATACCCT
63584844 TGTAGGGTAG
Statistics
Matches: 171, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
27 169 0.99
28 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGACTTGTAA
Found at i:63584818 original size:81 final size:81
Alignment explanation
Indices: 63584663--63584843 Score: 177
Period size: 81 Copynumber: 2.2 Consensus size: 81
63584653 CCTGGTTTGT
* ** * *
63584663 AAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCA
1 AAAATTACCAAAATACCCTCGA-CCTATAAAATTACCAAAATACCCCTAATTTATAAAATTACCA
* **
63584727 AAATATCCTCGACTTGT
65 AAATACCCTCGACTTAC
* * * *
63584744 AAAATTACCAAAGTACCCTCGACCTATAAAATTACCAAAGTA-TCCTCAATTTATAGAATTACCA
1 AAAATTACCAAAATACCCTCGACCTATAAAATTACCAAAATACCCCT-AATTTATAAAATTACCA
*** *
63584808 TTTTACCCTCGATTTAC
65 AAATACCCTCGACTTAC
*
63584825 AAAATTATCAAAATACCCT
1 AAAATTACCAAAATACCCT
63584844 TGTAGGGTAG
Statistics
Matches: 80, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
80 3 0.04
81 75 0.94
82 2 0.03
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGACCTATAAAATTACCAAAATACCCCTAATTTATAAAATTACCAA
AATACCCTCGACTTAC
Found at i:63584865 original size:27 final size:27
Alignment explanation
Indices: 63584835--63584910 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
63584825 AAAATTATCA
63584835 AAATACCCTTGTAGGGTAGAAATACCT-
1 AAATACCCTTGTAGGGTAGAAATA-CTG
* * *
63584862 AAATACCCCTGTAGAGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAAATACTG
* *
63584889 AGATACCCTTGTGGGGTA-AAAT
1 AAATACCCTTGTAGGGTAGAAAT
63584911 TACCATTTTA
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
26 5 0.12
27 35 0.88
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAAATACTG
Found at i:63584911 original size:27 final size:26
Alignment explanation
Indices: 63584825--63584913 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 26
63584815 CTCGATTTAC
*
63584825 AAAATTATCAAAATACCCTTGTAGGGT
1 AAAATTA-CTAAATACCCTTGTAGGGT
* *
63584852 AGAAA-TACCTAAATACCCCTGTAGAGT
1 A-AAATTA-CTAAATACCCTTGTAGGGT
* * *
63584879 AGAATTACTGAGATACCCTTGTGGGGT
1 AAAATTACT-AAATACCCTTGTAGGGT
63584906 AAAATTAC
1 AAAATTAC
63584914 CATTTTACCC
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
26 4 0.08
27 42 0.86
28 3 0.06
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (26 bp):
AAAATTACTAAATACCCTTGTAGGGT
Found at i:63585342 original size:22 final size:22
Alignment explanation
Indices: 63585290--63585354 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
63585280 GCCAATTATT
* *
63585290 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
63585312 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
63585334 CTGATTATGGCTCTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
63585355 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:63585586 original size:26 final size:26
Alignment explanation
Indices: 63585519--63585617 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 26
63585509 TAAGTGGCTT
* * * *
63585519 TGCCACATTATCTGTTTCCGGTGGCTA
1 TGCCACAATATCTG-TTCTGGTGACTC
*
63585546 TGCCACAAATATCTGTTCTGGCTG-TTC
1 TGCCAC-AATATCTGTTCTGG-TGACTC
63585573 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGACTC
*
63585600 TGTCACAATATCTGTTCT
1 TGCCACAATATCTGTTCT
63585618 AGCAGCCATG
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
26 14 0.23
27 39 0.63
28 9 0.15
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.37
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:63585768 original size:25 final size:25
Alignment explanation
Indices: 63585740--63585847 Score: 120
Period size: 25 Copynumber: 4.6 Consensus size: 25
63585730 CATTCACATT
* *
63585740 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
*
63585765 CTGATTCTGATTCAGTCACC---TA
1 CTGATTCTGATTCTGTCACCTGATA
* *
63585787 ---ATTCTGATTCTGTTACTTGATA
1 CTGATTCTGATTCTGTCACCTGATA
*
63585809 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATA
63585834 CTGATTCTGATTCT
1 CTGATTCTGATTCT
63585848 CATTTTGATT
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
19 14 0.21
22 4 0.06
25 50 0.74
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:63585776 original size:6 final size:6
Alignment explanation
Indices: 63585737--63585859 Score: 65
Period size: 6 Copynumber: 19.8 Consensus size: 6
63585727 TTGCATTCAC
* * * * *
63585737 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCAG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
63585787 ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG ATTCTG -TCACCTG ATTCTG
1 ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
63585837 ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
63585860 ATTTCTGTAA
Statistics
Matches: 87, Mismatches: 18, Indels: 24
0.67 0.14 0.19
Matches are distributed among these distances:
5 6 0.07
6 67 0.77
7 10 0.11
8 4 0.05
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:63585797 original size:44 final size:44
Alignment explanation
Indices: 63585747--63585842 Score: 165
Period size: 44 Copynumber: 2.2 Consensus size: 44
63585737 ATTCTGATTT
63585747 TGATTCTGTTACCTGATACTGATTCTGATTCAGTCACCTAATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTCAGTCACCTAATTC
* * *
63585791 TGATTCTGTTACTTGATACTGATTCTGATTCTGTCACCTGATTC
1 TGATTCTGTTACCTGATACTGATTCTGATTCAGTCACCTAATTC
63585835 TGATTCTG
1 TGATTCTG
63585843 ATTCTCATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.44
Consensus pattern (44 bp):
TGATTCTGTTACCTGATACTGATTCTGATTCAGTCACCTAATTC
Found at i:63585831 original size:19 final size:19
Alignment explanation
Indices: 63585765--63585842 Score: 75
Period size: 19 Copynumber: 3.8 Consensus size: 19
63585755 TTACCTGATA
*
63585765 CTGATTCTGATTCAGTCAC
1 CTGATTCTGATTCTGTCAC
* *
63585784 CTAATTCTGATTCTGTTACTTGATA
1 CTGATTCTGATTCTG-T-C---A-C
63585809 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
63585828 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
63585843 ATTCTCATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
19 28 0.58
20 2 0.04
21 1 0.02
23 1 0.02
24 2 0.04
25 14 0.29
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (19 bp):
CTGATTCTGATTCTGTCAC
Found at i:63588008 original size:27 final size:27
Alignment explanation
Indices: 63587751--63588009 Score: 236
Period size: 27 Copynumber: 9.6 Consensus size: 27
63587741 TGTAGGGTAG
* * * *
63587751 AATTACTAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTCGATTTGTAA
* *
63587778 AATTACGAAAATATCCCTAG-TTTGTAA
1 AATTACCAAAATA-CCCTCGATTTGTAA
*
63587805 AATTACCAAAATACCC-CTGGTTTGTAA
1 AATTACCAAAATACCCTC-GATTTGTAA
* *
63587832 AATTACCAATATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCTCGA-TTTGTAA
* *
63587859 AATTACCAAAATACCCTTGATTTGTGA
1 AATTACCAAAATACCCTCGATTTGTAA
* *
63587886 AATTACTAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
** *
63587913 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
* * * *
63587940 AATTACCAAAATACGCTCAATTTATAG
1 AATTACCAAAATACCCTCGATTTGTAA
**** **
63587967 AATTACCGTTTTACCCTCGATTTACAA
1 AATTACCAAAATACCCTCGATTTGTAA
63587994 AATTACCAAAATACCC
1 AATTACCAAAATACCC
63588010 CTGTAGGGTA
Statistics
Matches: 191, Mismatches: 36, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
26 4 0.02
27 181 0.95
28 6 0.03
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGATTTGTAA
Found at i:63588024 original size:27 final size:27
Alignment explanation
Indices: 63587994--63588135 Score: 185
Period size: 27 Copynumber: 5.3 Consensus size: 27
63587984 CGATTTACAA
*
63587994 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
63588021 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63588048 AATTACCGAAATTCCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
63588075 AAATACCGAAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
63588102 AATTATCGAGATACCCTTGTGGGGAAA
1 AATTACCGAAATACCCCTGTAGGGTAG
63588129 AATTACC
1 AATTACC
63588136 ATTTTGACTC
Statistics
Matches: 99, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:63588818 original size:27 final size:26
Alignment explanation
Indices: 63588735--63588818 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 26
63588725 ATTCTGTTAA
* * * *
63588735 GTGGCTTTGCCACATTATTTGTTTTTG
1 GTGGCTTTGCCACAATATCT-ATTCTG
* *
63588762 GTGGCTATGCCACAAATATCTATTCCG
1 GTGGCTTTGCCAC-AATATCTATTCTG
63588789 GTGGCTTTGCCACAATATCTATATCTG
1 GTGGCTTTGCCACAATATCTAT-TCTG
63588816 GTG
1 GTG
63588819 ACTCTGTCAT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
26 9 0.19
27 33 0.70
28 5 0.11
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.39
Consensus pattern (26 bp):
GTGGCTTTGCCACAATATCTATTCTG
Found at i:63588832 original size:27 final size:26
Alignment explanation
Indices: 63588769--63588833 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
63588759 TTGGTGGCTA
* *
63588769 TGCCACAAATATCTATTCCGGTGGCTT
1 TGCCAC-AATATCTATTCCGGTGACTC
*
63588796 TGCCACAATATCTATATCTGGTGACTC
1 TGCCACAATATCTAT-TCCGGTGACTC
* *
63588823 TGTCATAATAT
1 TGCCACAATAT
63588834 TTGTTCTGGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 9 0.28
27 23 0.72
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.35
Consensus pattern (26 bp):
TGCCACAATATCTATTCCGGTGACTC
Found at i:63588999 original size:6 final size:6
Alignment explanation
Indices: 63588960--63589097 Score: 52
Period size: 6 Copynumber: 22.3 Consensus size: 6
63588950 TTGCATTCAC
* * * *
63588960 ATTCTG ATTATG ATTCTG -TTGCCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * * *
63589010 ATTCTG ATTCT- ATTACCTT ATACTT ATTCTG ATTTTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
63589059 -TCACCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
63589098 AATGTTTCTT
Statistics
Matches: 97, Mismatches: 21, Indels: 28
0.66 0.14 0.19
Matches are distributed among these distances:
5 8 0.08
6 73 0.75
7 11 0.11
8 5 0.05
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:63589016 original size:25 final size:25
Alignment explanation
Indices: 63588960--63589020 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
63588950 TTGCATTCAC
* ** *
63588960 ATTCTGATTATGATTCTGTTGCCTG
1 ATTCTGATTCTGATTCTGTCACCTA
*
63588985 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
63589010 ATTCTGATTCT
1 ATTCTGATTCT
63589021 ATTACCTTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:63589057 original size:37 final size:37
Alignment explanation
Indices: 63589010--63589094 Score: 98
Period size: 37 Copynumber: 2.3 Consensus size: 37
63589000 CTGTCACCTA
* * * * *
63589010 ATTCTGATTCTATTACCTTATACTTATTCTGATTTTG
1 ATTCTAATTCTATCACCTGATACTGATTCTCATTTTG
* *
63589047 ATTCTAATTCTGTCACCTGATTCTGATTCTCATTTTG
1 ATTCTAATTCTATCACCTGATACTGATTCTCATTTTG
*
63589084 ATTCTAGTTCT
1 ATTCTAATTCT
63589095 GATAATGTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.20, C:0.19, G:0.09, T:0.52
Consensus pattern (37 bp):
ATTCTAATTCTATCACCTGATACTGATTCTCATTTTG
Found at i:63589069 original size:19 final size:19
Alignment explanation
Indices: 63588988--63589076 Score: 74
Period size: 19 Copynumber: 4.7 Consensus size: 19
63588978 TTGCCTGATA
63588988 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
* * *
63589007 CTAATTCTGATTCTATTAC
1 CTGATTCTGATTCTGTCAC
* * * *
63589026 CTTATACTTATTCTG--ATT
1 CTGATTCTGATTCTGTCA-C
* *
63589044 TTGATTCTAATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
63589063 CTGATTCTGATTCT
1 CTGATTCTGATTCT
63589077 CATTTTGATT
Statistics
Matches: 52, Mismatches: 15, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
17 1 0.02
18 11 0.21
19 39 0.75
20 1 0.02
ACGTcount: A:0.20, C:0.21, G:0.10, T:0.48
Consensus pattern (19 bp):
CTGATTCTGATTCTGTCAC
Found at i:63592995 original size:40 final size:40
Alignment explanation
Indices: 63592793--63592996 Score: 232
Period size: 40 Copynumber: 5.1 Consensus size: 40
63592783 TCTTTGGAAT
* * *
63592793 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * * ** * *
63592832 TTAACCCGAATTTGGTGACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
63592872 TTAACCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
63592912 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
63592952 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
63592992 TTAGC
1 TTAGC
63592997 TCGGGTATCA
Statistics
Matches: 140, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 3 0.02
40 136 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:63596740 original size:53 final size:51
Alignment explanation
Indices: 63596599--63596802 Score: 168
Period size: 52 Copynumber: 4.0 Consensus size: 51
63596589 TGACGGAAAA
* * *
63596599 GATGTGATATGTGTGCCCGTTTAAGACCATAGT-TGGGCTATGGCATCTGTGT
1 GATGTGATATGTGT-TCCGTATAAGACCATA-TCTGGGCTATGGCATCGGTGT
* * * * * *
63596651 AATGTGACACGTGTTCCCGTAAAAGACCATAGCTGGGCTATGGCGTCGGTGT
1 GATGTGATATGTGTT-CCGTATAAGACCATATCTGGGCTATGGCATCGGTGT
*
63596703 GATGTGATAATGTGATTCCGTATAAGACCATATCTGGGATATGGCATC-GT-T
1 GATGTGAT-ATGTG-TTCCGTATAAGACCATATCTGGGCTATGGCATCGGTGT
* * ** ** *
63596754 -AT-T-ATATGTGATCCGTGTAAGACCATGGCACGGCTATGGCTTCGGTGT
1 GATGTGATATGTGTTCCGTATAAGACCATATCTGGGCTATGGCATCGGTGT
63596802 G
1 G
63596803 TGATATGTGA
Statistics
Matches: 121, Mismatches: 24, Indels: 17
0.75 0.15 0.10
Matches are distributed among these distances:
46 25 0.21
47 7 0.06
48 3 0.02
49 1 0.01
50 2 0.02
51 1 0.01
52 49 0.40
53 31 0.26
54 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (51 bp):
GATGTGATATGTGTTCCGTATAAGACCATATCTGGGCTATGGCATCGGTGT
Done.