Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 213 of 335
Found at i:63600659 original size:23 final size:23
Alignment explanation
Indices: 63600599--63600735 Score: 102
Period size: 23 Copynumber: 5.8 Consensus size: 23
63600589 GACTCACCAT
*
63600599 AGCTCGTAAGAGCTTACTGTTTC
1 AGCTCGAAAGAGCTTACTGTTTC
** * *
63600622 AGCTC-ATTGGGGCTTACTGATTC
1 AGCTCGA-AAGAGCTTACTGTTTC
63600645 AGCTCGAAAGAGCTTACTG-TTC
1 AGCTCGAAAGAGCTTACTGTTTC
* * *
63600667 AGTTC-AATAGAGCTTACCGTTTTT
1 AGCTCGAA-AGAGCTTACTG-TTTC
63600691 AGCTC-AATAGAGCTTACTGTTTATC
1 AGCTCGAA-AGAGCTTACTG-TT-TC
*
63600716 AGCTCAGTAAGAGCTTACTG
1 AGCTC-GAAAGAGCTTACTG
63600736 ACCATGACTC
Statistics
Matches: 91, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
21 2 0.02
22 17 0.19
23 31 0.34
24 23 0.25
25 6 0.07
26 11 0.12
27 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (23 bp):
AGCTCGAAAGAGCTTACTGTTTC
Found at i:63600695 original size:46 final size:45
Alignment explanation
Indices: 63600598--63600711 Score: 122
Period size: 46 Copynumber: 2.5 Consensus size: 45
63600588 AGACTCACCA
* * * * *
63600598 TAGCTCGTAAGAGCTTACTGTTTCAGCTCATTGGGGCTTACTGATT
1 TAGCTCGAAAGAGCTTACTG-TTCAGCTCAATAGAGCTTACCGATT
* * *
63600644 CAGCTCGAAAGAGCTTACTGTTCAGTTCAATAGAGCTTACCGTTTT
1 TAGCTCGAAAGAGCTTACTGTTCAGCTCAATAGAGCTTACCG-ATT
63600690 TAGCTC-AATAGAGCTTACTGTT
1 TAGCTCGAA-AGAGCTTACTGTT
63600712 TATCAGCTCA
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
45 19 0.33
46 38 0.67
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (45 bp):
TAGCTCGAAAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGATT
Found at i:63600702 original size:24 final size:25
Alignment explanation
Indices: 63600665--63600733 Score: 86
Period size: 24 Copynumber: 2.8 Consensus size: 25
63600655 AGCTTACTGT
*
63600665 TCAGTTCAATAGAGCTTACCGTTT-
1 TCAGCTCAATAGAGCTTACCGTTTA
* *
63600689 TTAGCTCAATAGAGCTTACTGTTTA
1 TCAGCTCAATAGAGCTTACCGTTTA
*
63600714 TCAGCTCAGTAAGAGCTTAC
1 TCAGCTCAAT-AGAGCTTAC
63600734 TGACCATGAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
24 21 0.55
25 8 0.21
26 9 0.24
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (25 bp):
TCAGCTCAATAGAGCTTACCGTTTA
Found at i:63605594 original size:27 final size:27
Alignment explanation
Indices: 63605564--63605774 Score: 287
Period size: 27 Copynumber: 7.8 Consensus size: 27
63605554 ATTACCAAAG
* *
63605564 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63605591 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
63605618 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* ** *
63605645 TACTCTTAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
63605672 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
63605699 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63605726 TACCCTCGATTTAAAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
63605753 TACCCTTGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
63605775 TAAAATACCC
Statistics
Matches: 165, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 165 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:63605783 original size:27 final size:27
Alignment explanation
Indices: 63605726--63605818 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
63605716 ATTACCGTTT
* * ****
63605726 TACCCTCGATTTAAAAAATTACCGTTT
1 TACCCTTGATTTACAAAATTACCAAAA
*
63605753 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
* *
63605780 TACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAA
*
63605807 TACCCTTAATTT
1 TACCCTTGATTT
63605819 GTGAAATTAT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.37
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACCAAAA
Found at i:63605811 original size:81 final size:81
Alignment explanation
Indices: 63605539--63605812 Score: 278
Period size: 81 Copynumber: 3.4 Consensus size: 81
63605529 TACTGAAATG
* * * *
63605539 CCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTA
*
63605604 TAGAATTACCATTTTA
66 CAGAATTACCATTTTA
* *** * ** * * *
63605620 CCCTCGATTTATAGAATTACCGTTTTACTCTTAATTTACAGAATTACCATTTTACCCTCAATTTA
1 CCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTA
*
63605685 CAGAATTACCGTTTTA
66 CAGAATTACCATTTTA
* *** * *
63605701 CCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTAAAAAATTACCGTTTTACCCTTGATTTA
1 CCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTA
* * ***
63605766 CAAAATTACTAAAATA
66 CAGAATTACCATTTTA
* * *
63605782 CCCTTGGTTTATAAAATTACCAAAATACCCT
1 CCCTCGATTTATAAAATTACCAAATTACCCT
63605813 TAATTTGTGA
Statistics
Matches: 156, Mismatches: 37, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 156 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (81 bp):
CCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTA
CAGAATTACCATTTTA
Found at i:63605825 original size:27 final size:27
Alignment explanation
Indices: 63605753--63605836 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
63605743 ATTACCGTTT
* * *
63605753 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTAATTTATAAAATTACCAAAA
**
63605780 TACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTTAATTTATAAAATTACCAAAA
* * * *
63605807 TACCCTTAATTTGTGAAATTATCGAAA
1 TACCCTTAATTTATAAAATTACCAAAA
63605834 TAC
1 TAC
63605837 TCTCGATTTG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.35
Consensus pattern (27 bp):
TACCCTTAATTTATAAAATTACCAAAA
Found at i:63605893 original size:27 final size:27
Alignment explanation
Indices: 63605855--63606205 Score: 488
Period size: 27 Copynumber: 13.0 Consensus size: 27
63605845 TGTAAAATAT
63605855 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
63605882 CGAAATACCCCTGTAGGGTAGGATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
63605909 CGAAATAACCTTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
63605936 CGAAATACCCCTGTATGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
63605963 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
63605990 CAAAATACCCTTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
63606017 CGAAATACCCC-GTACGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
63606043 TGAAATAACCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
63606070 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
63606097 TGAAATACCCCTATAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** *
63606124 TAAAATAACCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
63606151 TGAAATACCCCTGTAGGGTCGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
63606178 TGAAATACCCCTGTAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
63606205 C
1 C
63606206 ATTTTGCCCC
Statistics
Matches: 284, Mismatches: 39, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 22 0.08
27 262 0.92
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:63606446 original size:25 final size:25
Alignment explanation
Indices: 63606408--63606477 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
63606398 AGGAAGTGCT
* *
63606408 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
63606433 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
63606458 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
63606478 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:63606490 original size:24 final size:24
Alignment explanation
Indices: 63606407--63606502 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
63606397 GAGGAAGTGC
*
63606407 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
63606432 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
63606456 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
63606480 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
63606503 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:63606501 original size:50 final size:50
Alignment explanation
Indices: 63606408--63606502 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
63606398 AGGAAGTGCT
**
63606408 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
63606458 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
63606503 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:63611919 original size:28 final size:28
Alignment explanation
Indices: 63611888--63612044 Score: 127
Period size: 28 Copynumber: 5.5 Consensus size: 28
63611878 CTGACTGATT
*
63611888 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * * *
63611916 TCGCACGCATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
*
63611945 TCGCACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * ** *
63611973 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTG-CTCGATTAAAGAAC
* * * **
63612002 TGGCACATATAGTGCTCGGTTGGAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
*
63612030 TTGCACACATAGTGC
1 TCGCACACATAGTGC
63612045 CTCATAATTC
Statistics
Matches: 98, Mismatches: 27, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
27 1 0.01
28 54 0.55
29 42 0.43
30 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:63611955 original size:57 final size:57
Alignment explanation
Indices: 63611888--63612048 Score: 223
Period size: 57 Copynumber: 2.8 Consensus size: 57
63611878 CTGACTGATT
* * * *
63611888 TCGCACACATAGCGCTCGATTAAAGAACTCGCACGCATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
**
63611945 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * * *
63612002 TGGCACATATAGTGCTCGGTTGGAGAACTTGCACACATAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
63612049 TAATTCCAGC
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 93 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:63612120 original size:40 final size:40
Alignment explanation
Indices: 63612076--63612330 Score: 456
Period size: 40 Copynumber: 6.4 Consensus size: 40
63612066 CCTTTGAGGT
* *
63612076 TTAGCCCGGATATATCACTAGCACGAATGCTCTTTGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
63612116 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
63612156 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
63612196 TTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* *
63612236 TTAGCCCAGATATATCACTAGCACGAATGCTCTTTGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
63612276 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
63612316 TTAGCCCGGATATAT
1 TTAGCCCGGATATAT
63612331 ATATATCTCT
Statistics
Matches: 208, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 208 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:63613867 original size:46 final size:46
Alignment explanation
Indices: 63613814--63613996 Score: 294
Period size: 46 Copynumber: 4.0 Consensus size: 46
63613804 TATATATACA
* * * *
63613814 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
63613860 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
63613906 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
63613952 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
63613997 ATACACTTCC
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 129 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:63614041 original size:47 final size:47
Alignment explanation
Indices: 63613970--63614345 Score: 571
Period size: 47 Copynumber: 8.1 Consensus size: 47
63613960 ACACATTTCG
* * * * * *
63613970 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
63614017 CATTGGCCATTCTGCCTTATCAC--ATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
63614062 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
63614109 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
63614156 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
63614203 CATTGGCCATTCGGCCTTATCACA-ATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
63614249 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
63614296 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
63614343 CAT
1 CAT
63614346 AAAATCCTAA
Statistics
Matches: 309, Mismatches: 16, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
44 1 0.00
45 39 0.13
46 45 0.15
47 224 0.72
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:63614289 original size:187 final size:186
Alignment explanation
Indices: 63613970--63614345 Score: 583
Period size: 187 Copynumber: 2.0 Consensus size: 186
63613960 ACACATTTCG
* * * *
63613970 CATTAGCCATTCGGCTTTACCACATATATACACTTCCACGTTCATCACATTGGCCATTCTGCCTT
1 CATTAGCCATTCGGCCTTACCACACATATACACTTCCACATTCATCACATTGGCCATTCGGCCTT
63614035 ATCACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATATTCA
66 ATCACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATATTCA
* **
63614100 CATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
131 CATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATTCACATTCATCA
* * * *
63614156 CATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCT
1 CATTAGCCATTCGGCCTTACCACACATATACACT-TCCACATTCATCACATTGGCCATTCGGCCT
* *
63614220 TATCACAATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
65 TATCAC-ATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATATT
* * *
63614285 CACATTCATCACATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
129 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATTCACATTCATCA
63614343 CAT
1 CAT
63614346 AAAATCCTAA
Statistics
Matches: 172, Mismatches: 16, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
185 1 0.01
186 60 0.35
187 111 0.65
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (186 bp):
CATTAGCCATTCGGCCTTACCACACATATACACTTCCACATTCATCACATTGGCCATTCGGCCTT
ATCACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATATTCA
CATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATTCACATTCATCA
Found at i:63618242 original size:29 final size:29
Alignment explanation
Indices: 63618183--63618256 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
63618173 GATTAAAGAA
* *
63618183 CTCGCACGCATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAACTACCAAT
**
63618212 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAACTACCAAT
* *
63618241 CTGGCACATATAGTGC
1 CTCGCACACATAGTGC
63618257 TCGGTTGGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.24
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAACTACCAAT
Found at i:63618407 original size:39 final size:40
Alignment explanation
Indices: 63618315--63618604 Score: 527
Period size: 39 Copynumber: 7.4 Consensus size: 40
63618305 GCCTTGAGGT
*
63618315 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
63618355 TTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
63618394 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
63618434 TTAGCCC-GATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
63618473 TTAGCCC-GA-ATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
63618511 TTAGCCC-GATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
63618550 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
63618590 TTAGCCCGGATATAT
1 TTAGCCCGGATATAT
63618605 ATACTCTCAA
Statistics
Matches: 245, Mismatches: 2, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
38 38 0.16
39 115 0.47
40 92 0.38
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:63618473 original size:79 final size:80
Alignment explanation
Indices: 63618315--63618604 Score: 527
Period size: 79 Copynumber: 3.7 Consensus size: 80
63618305 GCCTTGAGGT
*
63618315 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACG
63618380 AATGCTCTTC-GGAC
66 AATGCTCTTCGGGAC
63618394 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCC-GATATATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACG
63618458 AATGCTCTTCGGGAC
66 AATGCTCTTCGGGAC
63618473 TTAGCCC-GA-ATATCACTAGCACGAATGCTCTTCGGGACTTAGCCC-GATATATCACTAGCACG
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACG
63618535 AATGCTCTTCGGGAC
66 AATGCTCTTCGGGAC
*
63618550 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAGTTAGCCCGGATATAT
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
63618605 ATACTCTCAA
Statistics
Matches: 205, Mismatches: 2, Indels: 7
0.96 0.01 0.03
Matches are distributed among these distances:
77 75 0.37
78 31 0.15
79 92 0.45
80 7 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACG
AATGCTCTTCGGGAC
Found at i:63620181 original size:45 final size:45
Alignment explanation
Indices: 63620086--63620266 Score: 272
Period size: 45 Copynumber: 4.0 Consensus size: 45
63620076 TATATATACA
* * * *
63620086 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCA-TTCGCTTTACCACATATC
* *
63620132 CATCTCATACACGTTTCGCATTAGCCATTCGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGCTTTACCACATATC
* *
63620177 CATCTCATACACGTTTCGCATTAGCCATTCGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGCTTTACCACATATC
63620222 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTC-GCTTTACCACATAT
63620267 ATACACTTCC
Statistics
Matches: 126, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 90 0.71
46 36 0.29
ACGTcount: A:0.25, C:0.32, G:0.08, T:0.35
Consensus pattern (45 bp):
CATCTCATACACATTTCGCATTAGCCATTCGCTTTACCACATATC
Found at i:63620311 original size:47 final size:47
Alignment explanation
Indices: 63620240--63620617 Score: 555
Period size: 47 Copynumber: 8.1 Consensus size: 47
63620230 ACACATTTCG
* * * * * *
63620240 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
63620287 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
63620334 CATTGGCCATTC-GCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
63620380 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
63620427 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
63620474 CATTGGCCATTCGGCCTTATCACAGATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
63620521 CATTGGCCATTCGGCCTTATCTCATCA-ATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAT-ATATGCATGTTCACATTCATCA
* * * ** *
63620568 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACTTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
63620615 CAT
1 CAT
63620618 AAAATCCTAA
Statistics
Matches: 309, Mismatches: 18, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
46 47 0.15
47 261 0.84
48 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:63620497 original size:22 final size:21
Alignment explanation
Indices: 63620283--63620403 Score: 73
Period size: 22 Copynumber: 5.3 Consensus size: 21
63620273 TTCCACGTTC
63620283 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTC-GCCTT
* * *
63620305 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCA--TTCGCCTT
63620329 CATCACATTGGCCATTCGCCTT
1 -ATCACATTGGCCATTCGCCTT
* * * *
63620351 ATCACATATATGCATATTCACATT
1 ATCACAT-T-GGC-CATTCGCCTT
63620375 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTC-GCCTT
63620398 ATCACA
1 ATCACA
63620404 CATATGCATG
Statistics
Matches: 74, Mismatches: 14, Indels: 22
0.67 0.13 0.20
Matches are distributed among these distances:
21 7 0.09
22 24 0.32
23 11 0.15
24 15 0.20
25 17 0.23
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (21 bp):
ATCACATTGGCCATTCGCCTT
Found at i:63625028 original size:27 final size:26
Alignment explanation
Indices: 63624979--63625031 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
63624969 AGTGAGGCTG
*
63624979 CCAGATATTGTGACGAAGTCACCAGA
1 CCAGATATTGTGACGAAGCCACCAGA
* *
63625005 CCAGATATATGTGGCGAGGCCACCAGA
1 CCAGATAT-TGTGACGAAGCCACCAGA
63625032 TTTCAGCGAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.32, C:0.25, G:0.26, T:0.17
Consensus pattern (26 bp):
CCAGATATTGTGACGAAGCCACCAGA
Found at i:63626780 original size:25 final size:25
Alignment explanation
Indices: 63626734--63626803 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
63626724 AGGAAGTGCT
* * *
63626734 AAAAGGGCTATGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
63626759 AAAAGGGCTTTGCTCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
63626784 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
63626804 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:63626816 original size:24 final size:25
Alignment explanation
Indices: 63626734--63626816 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
63626724 AGGAAGTGCT
* * *
63626734 AAAAG-GGCTATGCCCCAATTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
*
63626758 GAAAAG-GGCTTTGCTCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
*
63626783 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
63626807 AAAAGAGGCT
1 AAAAGAGGCT
63626817 AGGCCTCCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
24 16 0.33
25 33 0.67
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:63628335 original size:40 final size:40
Alignment explanation
Indices: 63628270--63628513 Score: 294
Period size: 40 Copynumber: 6.1 Consensus size: 40
63628260 CGGAATACAA
* ** * * *
63628270 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
63628310 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
63628350 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
63628390 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * * *
63628430 CCGGATATAGTC-ACTAGCACAATTGCCTTCGAGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
** * * *
63628470 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
63628510 CCGG
1 CCGG
63628514 GTATCATTCA
Statistics
Matches: 180, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
40 179 0.99
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:63628701 original size:123 final size:123
Alignment explanation
Indices: 63628482--63628820 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
63628472 GGATATAATT
* * * * * * **
63628482 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
*
63628547 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
63628605 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
63628670 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
63628728 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
63628793 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
63628821 CACATAATTC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:63635096 original size:40 final size:40
Alignment explanation
Indices: 63634881--63635087 Score: 265
Period size: 40 Copynumber: 5.2 Consensus size: 40
63634871 GAATACAACT
* ** * * *
63634881 GGATATAACCACACGCACGAATGCCCTCGGGTCTTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
* *
63634921 GAATATAACGACTTGCACAAATGCCTTCGGGTATTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
63634961 GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
63635001 GGATATAACAACTTGCACAAATGCCTTC-GGTATTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
* * * * * *
63635040 GGATATAGTC-ACTAGCACAATTACCTTCGGGTCTTAACCC
1 GGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGCCC
63635080 GGATATAA
1 GGATATAA
63635088 TTACTAGCAT
Statistics
Matches: 149, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 33 0.22
40 116 0.78
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
Found at i:63635102 original size:119 final size:120
Alignment explanation
Indices: 63634881--63635121 Score: 272
Period size: 119 Copynumber: 2.0 Consensus size: 120
63634871 GAATACAACT
* * * * *
63634881 GGATATAACCACACGCACGAATGCCCTCGGGTCTTAGCCCGAATATAACGACTTGCACAAATGCC
1 GGATATAACAACACGCACAAATGCCCTCGGGTATTAGCCCGAATATAACGACTAGCACAAATACC
* *
63634946 TTCGGGTATTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGCCC
66 TTCGGGTATTAACCCGGATATAACAACTAGCACAAATGCCTTCGGG-ACTTAGCCC
** * * * *
63635001 GGATATAACAACTTGCACAAATGCCTTC-GGTATTAGCCCGGATATAGTC-ACTAGCACAATTAC
1 GGATATAACAACACGCACAAATGCCCTCGGGTATTAGCCCGAATATA-ACGACTAGCACAAATAC
* ** * * *
63635064 CTTCGGGTCTTAACCCGGATATAATTACTAGCATAAATGTCTTTGGGACTTAGCCC
65 CTTCGGGTATTAACCCGGATATAACAACTAGCACAAATGCCTTCGGGACTTAGCCC
63635120 GG
1 GG
63635122 GTATCATTCA
Statistics
Matches: 100, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
118 1 0.01
119 75 0.75
120 24 0.24
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (120 bp):
GGATATAACAACACGCACAAATGCCCTCGGGTATTAGCCCGAATATAACGACTAGCACAAATACC
TTCGGGTATTAACCCGGATATAACAACTAGCACAAATGCCTTCGGGACTTAGCCC
Found at i:63635121 original size:40 final size:39
Alignment explanation
Indices: 63634881--63635121 Score: 232
Period size: 40 Copynumber: 6.1 Consensus size: 39
63634871 GAATACAACT
* ** * * *
63634881 GGATATAACCACACGCACGAATGCCCTCGGGTCTTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGG-ATTAGCCC
* *
63634921 GAATATAACGACTTGCACAAATGCCTTCGGGTATTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGG-ATTAGCCC
63634961 GGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGG-ATTAGCCC
*
63635001 GGATATAACAACTTGCACAAATGCCTTCGGTATTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGGATTAGCCC
* * * * * *
63635040 GGATATAGTC-ACTAGCACAATTACCTTCGGGTCTTAACCC
1 GGATATA-ACAACTTGCACAAATGCCTTCGGG-ATTAGCCC
** * * * *
63635080 GGATATAATTACTAGCATAAATGTCTTTGGGACTTAGCCC
1 GGATATAACAACTTGCACAAATGCCTTCGGGA-TTAGCCC
63635120 GG
1 GG
63635122 GTATCATTCA
Statistics
Matches: 171, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
39 32 0.19
40 139 0.81
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (39 bp):
GGATATAACAACTTGCACAAATGCCTTCGGGATTAGCCC
Found at i:63635309 original size:123 final size:123
Alignment explanation
Indices: 63635090--63635428 Score: 588
Period size: 123 Copynumber: 2.8 Consensus size: 123
63635080 GGATATAATT
* * * * * * * **
63635090 ACTAGCATAAATGTCTTTGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
*
63635155 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
63635213 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
63635278 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
63635336 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
63635401 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
63635429 CACATAATTC
Statistics
Matches: 206, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 206 1.00
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:63637186 original size:2 final size:2
Alignment explanation
Indices: 63637179--63637204 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
63637169 ACCCAAAATG
63637179 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
63637205 GAAGTTAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:63637319 original size:54 final size:54
Alignment explanation
Indices: 63637237--63637345 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 54
63637227 TACAGAACAT
* *
63637237 GGAACACATCCATAACTTCATTATTGAATATTAGACTTGTTTTATAAATGTCGC
1 GGAACACATCCACAACTTCATTATTGAATATCAGACTTGTTTTATAAATGTCGC
63637291 GGAACACATCCACAACTTCATTATTGAATATCAGACTTGTTTTATAAATGTCGC
1 GGAACACATCCACAACTTCATTATTGAATATCAGACTTGTTTTATAAATGTCGC
63637345 G
1 G
63637346 CGTATGCACA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (54 bp):
GGAACACATCCACAACTTCATTATTGAATATCAGACTTGTTTTATAAATGTCGC
Found at i:63639341 original size:58 final size:58
Alignment explanation
Indices: 63639271--63639388 Score: 227
Period size: 58 Copynumber: 2.0 Consensus size: 58
63639261 CCAAATCTGA
63639271 GTATTTTCTTCCATGGTGAGGCTTTCAAGAAGACTTTATCTCCAATCTGAAATTCTAT
1 GTATTTTCTTCCATGGTGAGGCTTTCAAGAAGACTTTATCTCCAATCTGAAATTCTAT
*
63639329 GTATTTTCTTCCATGGTGAGGCTTTTAAGAAGACTTTATCTCCAATCTGAAATTCTAT
1 GTATTTTCTTCCATGGTGAGGCTTTCAAGAAGACTTTATCTCCAATCTGAAATTCTAT
63639387 GT
1 GT
63639389 CTTTACGTTT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (58 bp):
GTATTTTCTTCCATGGTGAGGCTTTCAAGAAGACTTTATCTCCAATCTGAAATTCTAT
Found at i:63646248 original size:55 final size:54
Alignment explanation
Indices: 63646112--63646249 Score: 143
Period size: 55 Copynumber: 2.5 Consensus size: 54
63646102 GCTTAAGGAT
* * ** *
63646112 ACCAAGTAAGACCATGCCAAGGCATGGCATTTGTAAGTTTTACAAGGCAAGGAA
1 ACCATGTAAGACCATGCCAAGGCATGGCATTTGTAACTACTACAAGGCAAAGAA
* * ** * *
63646166 ATCATGTAAGACCATGTCAAGAAATGGCA-TTGATAAACTACTATAAGGCAAAGAT
1 ACCATGTAAGACCATGCCAAGGCATGGCATTTG-T-AACTACTACAAGGCAAAGAA
*
63646221 CCCATGTAAGACCATGCCAAGGCATGGCA
1 ACCATGTAAGACCATGCCAAGGCATGGCA
63646250 ATGGTGAGTT
Statistics
Matches: 66, Mismatches: 16, Indels: 3
0.78 0.19 0.04
Matches are distributed among these distances:
53 3 0.05
54 25 0.38
55 38 0.58
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (54 bp):
ACCATGTAAGACCATGCCAAGGCATGGCATTTGTAACTACTACAAGGCAAAGAA
Found at i:63653134 original size:37 final size:37
Alignment explanation
Indices: 63653075--63653183 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
63653065 AGCTCAGATG
* * * *
63653075 AAATCTCCACATGAAGTTATCGGGTCTTACTCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
63653112 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
63653149 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
63653184 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:63653385 original size:48 final size:48
Alignment explanation
Indices: 63653330--63653878 Score: 724
Period size: 48 Copynumber: 11.1 Consensus size: 48
63653320 ACACATCGCC
*
63653330 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
63653378 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
63653428 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTC--A
* *
63653478 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
63653526 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * *
63653578 TATATATTTCACATTAACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
63653626 TACATATTTCACATTAGCCATTCGGCTTTCCCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * * *
63653678 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTTATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC-T-CA
* * * *
63653728 TATATATTTCGCATTAGCCATTTGGCTTTACCACATATACATATCTTATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC-T-CA
* *
63653778 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
63653826 TACATATTTCACATTAGCCTTTCGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63653874 TACAT
1 TACAT
63653879 CAATTTCAGC
Statistics
Matches: 460, Mismatches: 27, Indels: 28
0.89 0.05 0.05
Matches are distributed among these distances:
48 185 0.40
49 3 0.01
50 184 0.40
52 87 0.19
53 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:63653456 original size:50 final size:50
Alignment explanation
Indices: 63653333--63653871 Score: 783
Period size: 50 Copynumber: 10.9 Consensus size: 50
63653323 CATCGCCTAC
* *
63653333 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
63653381 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
63653431 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
* *
63653481 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC--ATAC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
63653529 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATAT
* * *
63653581 ATATTTCACATTAACCATTCGGCTTTACCACATATGCATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
63653629 ATATTTCACATTAGCCATTCGGCTTTCCCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATAT
* * *
63653681 ATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTTATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* * *
63653731 ATATTTCGCATTAGCCATTTGGCTTTACCACATATACATATCTTATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
63653781 ATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
63653829 ATATTTCACATTAGCCTTTCGGCTTTACCACATATACATATCT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
63653872 TATACATCAA
Statistics
Matches: 453, Mismatches: 26, Indels: 24
0.90 0.05 0.05
Matches are distributed among these distances:
48 176 0.39
49 2 0.00
50 187 0.41
52 88 0.19
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:63657354 original size:40 final size:40
Alignment explanation
Indices: 63657298--63657576 Score: 369
Period size: 40 Copynumber: 7.0 Consensus size: 40
63657288 GAATACACAT
* * * * *
63657298 CACCAGCATGATTGCTCTTCGAGACCTAGCGCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
63657338 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * * *
63657378 CTCTAGCACAAATGCTCTTTGAGACTTAGCCCGAATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
63657418 CACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
63657458 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
63657498 CACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
63657538 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
63657577 TATAACTCTC
Statistics
Matches: 206, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 206 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:63657421 original size:80 final size:80
Alignment explanation
Indices: 63657294--63657576 Score: 422
Period size: 80 Copynumber: 3.5 Consensus size: 80
63657284 GCCCGAATAC
* * * * * *
63657294 ACATCACCAGCATGATTGCTCTTCGAGACCTAGCGCGGATATAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
* *
63657359 GGACTTAACCCTGAT
66 GGACTTAGCCCGGAT
* * * * * *
63657374 ATAACTCTAGCACAAATGCTCTTTGAGACTTAGCCCGAATATAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
63657439 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
*
63657454 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
63657519 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
*
63657534 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 ACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATA
63657577 TATAACTCTC
Statistics
Matches: 182, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 182 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (80 bp):
ACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
GGACTTAGCCCGGAT
Found at i:63658891 original size:37 final size:37
Alignment explanation
Indices: 63658832--63658912 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
63658822 AGCTCAGATG
* *
63658832 AAATCTCCACAAGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACAAGAAGTCATCGGGTCTTACCCGAACA
* *
63658869 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
1 AAATCTCCACAAGAAGTCATCGGGTCTTACCCGAACA
*
63658906 TAATCTC
1 AAATCTC
63658913 TATAGCTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (37 bp):
AAATCTCCACAAGAAGTCATCGGGTCTTACCCGAACA
Found at i:63659016 original size:131 final size:131
Alignment explanation
Indices: 63658782--63659043 Score: 497
Period size: 131 Copynumber: 2.0 Consensus size: 131
63658772 TACTATGTCT
*
63658782 TATAGCTTTAACCTCTACTCGGATTATCGGTGAGACCTTTAGCTCAGATGAAATCTCCACAAGAA
1 TATAGCTTTAACCTCTACTCCGATTATCGGTGAGACCTTTAGCTCAGATGAAATCTCCACAAGAA
63658847 GTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGAACATAATCT
66 GTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGAACATAATCT
63658912 C
131 C
*
63658913 TATAGCTTTAACCTCTACTCCGATTATCGGTGAGACCTTTAGCTCAGATGAAATCTCCACACGAA
1 TATAGCTTTAACCTCTACTCCGATTATCGGTGAGACCTTTAGCTCAGATGAAATCTCCACAAGAA
*
63658978 GTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
66 GTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGAACATAATCT
63659043 C
131 C
63659044 CAAACGTAGT
Statistics
Matches: 128, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
131 128 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (131 bp):
TATAGCTTTAACCTCTACTCCGATTATCGGTGAGACCTTTAGCTCAGATGAAATCTCCACAAGAA
GTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGAACATAATCT
C
Found at i:63659022 original size:37 final size:37
Alignment explanation
Indices: 63658963--63659069 Score: 178
Period size: 37 Copynumber: 2.9 Consensus size: 37
63658953 AGCTCAGATG
* *
63658963 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
63659000 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
63659037 TAATCTCCAAACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
63659070 AAATCTATTT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:63659273 original size:48 final size:48
Alignment explanation
Indices: 63659218--63659765 Score: 794
Period size: 48 Copynumber: 11.1 Consensus size: 48
63659208 ACACATCGCC
*
63659218 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
63659266 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
63659316 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
63659364 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--------A
* * *
63659420 TATATATTTCACATTAACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63659468 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
63659518 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
63659570 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
63659618 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63659666 TACATATTTC-CATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
63659713 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
63659761 TACAT
1 TACAT
63659766 CAATTTCAGC
Statistics
Matches: 459, Mismatches: 24, Indels: 34
0.89 0.05 0.07
Matches are distributed among these distances:
47 45 0.10
48 232 0.51
49 2 0.00
50 88 0.19
52 47 0.10
56 45 0.10
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:63659371 original size:98 final size:98
Alignment explanation
Indices: 63659221--63659765 Score: 823
Period size: 98 Copynumber: 5.5 Consensus size: 98
63659211 CATCGCCTAC
* *
63659221 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
63659286 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
63659319 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
63659383 ATTCGGCTTTACCACATATACATATCTCATATATATATAT
65 ATTCGGCTTTACCACATATACATATCTC------ATATAT
* *
63659423 ATATTTCACATTAACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
63659488 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* * * *
63659521 ATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATATATATATATTTCGCATTA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACATTA
*
63659586 GCCATTCGGCTTTACCACATATACATATCTC--ATAC
62 GCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
63659621 ATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTTATACATATTTC-CATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
63659685 TTCGGCTTTACCACATATACATATCTC--ATAC
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
63659716 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATACAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
63659766 CAATTTCAGC
Statistics
Matches: 420, Mismatches: 15, Indels: 27
0.91 0.03 0.06
Matches are distributed among these distances:
95 89 0.21
96 10 0.02
97 1 0.00
98 135 0.32
100 43 0.10
102 46 0.11
104 96 0.23
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (98 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:63659567 original size:202 final size:194
Alignment explanation
Indices: 63659218--63659765 Score: 832
Period size: 202 Copynumber: 2.8 Consensus size: 194
63659208 ACACATCGCC
* *
63659218 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
63659283 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTGACCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACC
*
63659348 ACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
131 ACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--
63659413 ATATATA
194 ------A
* * *
63659420 TATATATTTCACATTAACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
63659485 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCAGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACC
* *
63659550 ACATATACATATCTCATATATATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATC
131 ACATATACATATCTC----ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
63659615 TCA
192 TCA
* *
63659618 TACATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTTATACATATTTC-CATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* *
63659682 CCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACC
66 CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACC
*
63659745 ACATATACATATCTTATACAT
131 ACATATACATATCTCATACAT
63659766 CAATTTCAGC
Statistics
Matches: 322, Mismatches: 20, Indels: 19
0.89 0.06 0.05
Matches are distributed among these distances:
191 5 0.02
195 44 0.14
197 36 0.11
198 54 0.17
202 137 0.43
206 46 0.14
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (194 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACC
ACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:63663453 original size:53 final size:53
Alignment explanation
Indices: 63663252--63663451 Score: 193
Period size: 53 Copynumber: 3.7 Consensus size: 53
63663242 ATTAGGGTTT
* * * * * *
63663252 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTTATAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAG-TTCATAAGGC
* * * * * * *
63663306 AAGAAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGAT-AAGTTC-ATAAGGC
* * * * *
63663361 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTTCATAAGGC
* *
63663414 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATG
63663452 GTAGGTTTAA
Statistics
Matches: 116, Mismatches: 28, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 40 0.34
54 37 0.32
55 39 0.34
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTTCATAAGGC
Found at i:63668359 original size:43 final size:43
Alignment explanation
Indices: 63668311--63668435 Score: 187
Period size: 43 Copynumber: 2.9 Consensus size: 43
63668301 AGTGGCCACA
*
63668311 TATTCAGACCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
1 TATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
* **
63668354 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCTAGTGATGTG
1 TATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
* * *
63668397 TATTCGGGCCTTCGTGTCTAGCAGGCTTAATGCCGGTGA
1 TATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGA
63668436 AATGATATGT
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.15, C:0.24, G:0.30, T:0.31
Consensus pattern (43 bp):
TATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
Found at i:63674802 original size:38 final size:38
Alignment explanation
Indices: 63674737--63674839 Score: 125
Period size: 38 Copynumber: 2.7 Consensus size: 38
63674727 GGCTTAAAGA
** ** *
63674737 CCCGCAGGCTTCGTGCTAGTAAAATATCTGGGTTAAAT
1 CCCGCAGGCTTCGTGCTAGTATTATATCAAGGATAAAT
63674775 CCCGCAGGCTTCGTGCTAGTATTATATCAAGGATAAAT
1 CCCGCAGGCTTCGTGCTAGTATTATATCAAGGATAAAT
* * * *
63674813 CTCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTAGTATTATAT
63674840 TCGGGCCTTC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTAGTATTATATCAAGGATAAAT
Found at i:63675047 original size:43 final size:43
Alignment explanation
Indices: 63674837--63675034 Score: 360
Period size: 43 Copynumber: 4.6 Consensus size: 43
63674827 GCTGGTATTA
* * *
63674837 TATTCGGGCCTTCGGGCCTAGCAGGCTTCTTGCCGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
63674880 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
63674923 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
63674966 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
63675009 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
63675035 ATAATGCCGG
Statistics
Matches: 150, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 150 1.00
ACGTcount: A:0.10, C:0.26, G:0.34, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:63676842 original size:40 final size:40
Alignment explanation
Indices: 63676790--63677014 Score: 335
Period size: 40 Copynumber: 5.7 Consensus size: 40
63676780 GCCACTAGCT
* * * *
63676790 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
* *
63676830 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
* *
63676869 CAAACGCCTTCGTGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
* *
63676909 CGAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
*
63676949 CGAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
*
63676989 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63677015 ATTAGCCACT
Statistics
Matches: 174, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 34 0.20
40 140 0.80
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
Found at i:63677042 original size:80 final size:80
Alignment explanation
Indices: 63676757--63677050 Score: 346
Period size: 80 Copynumber: 3.7 Consensus size: 80
63676747 AAACCAAGTA
** * * *
63676757 CCTTCGGGGTTTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATGG
1 CCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* * *
63676821 TAACTTGCACAAATG
66 TAGCTCGCACGAATG
*** * * *
63676836 CCTTCGGGACTTAGCCCGG-TATAATAACTCGCACAAACGCCTTCGTGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
63676900 TAGCTCGCACGAACG
66 TAGCTCGCACGAATG
* * *
63676915 CCTTCGGGACTTAGCCCGGATATAG-TAGCTCGCACGAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGCCA-CTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
63676979 GTAGCTCGCACGAATG
65 GTAGCTCGCACGAATG
* *
63676995 CCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCTCAAAT-ACTCTCGGGACTTAGCC
1 CCTTCGGGACTTAGCCCGGATA-TAGCCACTAGCACAAATGCCT-TCGGGACTTAGCC
63677051 TGGTTATCAT
Statistics
Matches: 183, Mismatches: 26, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
79 82 0.45
80 100 0.55
81 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAGCTCGCACGAATG
Found at i:63679086 original size:27 final size:27
Alignment explanation
Indices: 63679038--63679089 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
63679028 GCGAGGCTGC
*
63679038 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGATA
* * *
63679065 CAGATATTGTGGCTAGGCCACCAGA
1 CAGATATTGTGACAAAGCCACCAGA
63679090 ATAGATTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACAAAGCCACCAGATA
Found at i:63679368 original size:26 final size:26
Alignment explanation
Indices: 63679337--63679386 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
63679327 AAATATCGAA
*
63679337 ATACCCCTGTAGGGTAGAATTACCGG
1 ATACCCCTGTAGGGTAAAATTACCGG
* *
63679363 ATACCCTTGTGGGGTAAAATTACC
1 ATACCCCTGTAGGGTAAAATTACC
63679387 ATTTTGCCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
ATACCCCTGTAGGGTAAAATTACCGG
Found at i:63679627 original size:25 final size:25
Alignment explanation
Indices: 63679589--63679658 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
63679579 AGGAAGTGCT
* *
63679589 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
63679614 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
63679639 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
63679659 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:63679671 original size:24 final size:24
Alignment explanation
Indices: 63679588--63679683 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
63679578 GAGGAAGTGC
*
63679588 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
63679613 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
63679637 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
63679661 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
63679684 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:63679682 original size:50 final size:50
Alignment explanation
Indices: 63679589--63679683 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
63679579 AGGAAGTGCT
**
63679589 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
63679639 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
63679684 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:63681001 original size:54 final size:54
Alignment explanation
Indices: 63680919--63681027 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
63680909 TACGGAACAT
*
63680919 GGAACACATCCATAACTTCATTATTGAATATTAGACTTGTTTTATAAATGTCGC
1 GGAACACATCCACAACTTCATTATTGAATATTAGACTTGTTTTATAAATGTCGC
63680973 GGAACACATCCACAACTTCATTATTGAATATTAGACTTGTTTTATAAATGTCGC
1 GGAACACATCCACAACTTCATTATTGAATATTAGACTTGTTTTATAAATGTCGC
63681027 G
1 G
63681028 CGTATGCACA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (54 bp):
GGAACACATCCACAACTTCATTATTGAATATTAGACTTGTTTTATAAATGTCGC
Found at i:63683463 original size:40 final size:40
Alignment explanation
Indices: 63683418--63683547 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
63683408 CGGAATATAA
63683418 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
63683458 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
63683498 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
63683538 CCGGATATAA
1 CCGGATATAA
63683548 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:63683562 original size:40 final size:40
Alignment explanation
Indices: 63683434--63683585 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
63683424 ATAAGCATGT
* * *
63683434 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
63683474 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
63683514 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
63683554 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
63683586 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:63683568 original size:80 final size:80
Alignment explanation
Indices: 63683434--63683585 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
63683424 ATAAGCATGT
* *
63683434 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
63683499 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
63683514 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
63683577 CCCGGATAT
64 CCCGGATAT
63683586 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:63684901 original size:10 final size:10
Alignment explanation
Indices: 63684886--63684912 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
63684876 TCTTTCTCCT
63684886 TTTTTTTTTA
1 TTTTTTTTTA
63684896 TTTTTTTTTA
1 TTTTTTTTTA
63684906 TTTTTTT
1 TTTTTTT
63684913 ATGCTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:63684923 original size:20 final size:18
Alignment explanation
Indices: 63684888--63684927 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
63684878 TTTCTCCTTT
*
63684888 TTTTTTTATTTTTTTTTA
1 TTTTTTTATTTATTTTTA
63684906 TTTTTTTATGCTTATTTTTA
1 TTTTTTTAT--TTATTTTTA
63684926 TT
1 TT
63684928 ATAATACTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTTTTATTTATTTTTA
Found at i:63701528 original size:53 final size:53
Alignment explanation
Indices: 63701349--63701555 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 53
63701339 ATTAGGGTTT
* * * * *
63701349 AAGGATACCAAGTAAGACCATGCCAAGGCATGG-AATTTGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAA-TGGTAAG-TTCATAAGGC
* * * * * * * * *
63701403 AAGAAAATCATGTAAGAGCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
63701458 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
63701511 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
63701556 TAATTCCAAA
Statistics
Matches: 117, Mismatches: 33, Indels: 7
0.75 0.21 0.04
Matches are distributed among these distances:
53 46 0.39
54 32 0.27
55 39 0.33
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:63706454 original size:43 final size:42
Alignment explanation
Indices: 63706414--63706530 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 42
63706404 CATATTCGAA
*
63706414 CCTTCGTGCCTAGCAAGCTTCATGCCGGTGATGTGTATTCGGG
1 CCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGTATTC-GG
* ***
63706457 CCTTCGTGCCTAGCAGGCTTCGTGTTAGTGATGTGTATTCCGG
1 CCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGTATT-CGG
* * *
63706500 CCTTCATGCCTAGCAGGCGTAATGCCGGTGA
1 CCTTCGTGCCTAGCAGGCTTCATGCCGGTGA
63706531 AATGATATGT
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 60 0.98
44 1 0.02
ACGTcount: A:0.15, C:0.26, G:0.30, T:0.30
Consensus pattern (42 bp):
CCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGTATTCGG
Found at i:63709079 original size:27 final size:27
Alignment explanation
Indices: 63709035--63709150 Score: 79
Period size: 27 Copynumber: 4.3 Consensus size: 27
63709025 TTACTTTACC
* * *
63709035 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACCAAAATACCCTCAATTTATA
* *
63709062 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
* **** *
63709089 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
* *** *
63709116 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
*
63709143 AAAGTACC
1 AAATTACC
63709151 GTTTTACTTT
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 76 1.00
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCAATTTATA
Found at i:63709155 original size:27 final size:27
Alignment explanation
Indices: 63709074--63709338 Score: 350
Period size: 27 Copynumber: 9.8 Consensus size: 27
63709064 ATTACCAAAG
*
63709074 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
63709101 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
63709128 TACCCTCGATTTATAAAAGTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
**
63709155 TACTTTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
** *
63709182 TACTTTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
63709209 TACCCTCGATTTAAAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
63709236 TACCGTCGATTTATAGGATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
63709263 TACACTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
63709290 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
63709317 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
63709339 TGAAATACCC
Statistics
Matches: 207, Mismatches: 31, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 207 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:63709347 original size:27 final size:27
Alignment explanation
Indices: 63709290--63709428 Score: 93
Period size: 27 Copynumber: 5.2 Consensus size: 27
63709280 ATTACCATTT
* * ***
63709290 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGAAA
*
63709317 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACCGAAA
* * * *
63709344 TACCCTTGGTTTACAAAATAACCAAAA
1 TACCCTCGATTTACAAAATTACCGAAA
*** *
63709371 TACCC-CTGATTTGTGAAATTATCGAAA
1 TACCCTC-GATTTACAAAATTACCGAAA
* ** *
63709398 TACTCTCGATTTGTAAAA-TATCGAAA
1 TACCCTCGATTTACAAAATTACCGAAA
63709424 TACCC
1 TACCC
63709429 CTGTAGGGTA
Statistics
Matches: 88, Mismatches: 22, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
26 12 0.14
27 75 0.85
28 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGAAA
Found at i:63709375 original size:81 final size:81
Alignment explanation
Indices: 63709128--63709375 Score: 187
Period size: 81 Copynumber: 3.1 Consensus size: 81
63709118 ATTACCATTT
* ** * * ** *
63709128 TACCCTCGATTTATAA-AAGTACCGTTTTACTTTCGATTTATAGAATTACCATTTTAC-TTTCGA
1 TACCCTCGATTTA-AAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATAATACACTT-GA
* * ***
63709191 TTTACAGAATTACCATTT
64 TTTACAAAATAACCAAAA
* * * ** **
63709209 TACCCTCGATTTAAAGAATTATCGTTTTACCGTCGATTTATAGGATTACCATTTTACACTTGATT
1 TACCCTCGATTTAAAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATAATACACTTGATT
* * ***
63709274 TACAGAATTACCATTT
66 TACAAAATAACCAAAA
* * * *
63709290 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGA-AATACCCTTGGT
1 TACCCTCGATTTAAAGAATTACCGTTTTACCCTCGATTTACAAAATTAC-CATAATACACTTGAT
63709354 TTACAAAATAACCAAAA
65 TTACAAAATAACCAAAA
63709371 TACCC
1 TACCC
63709376 CTGATTTGTG
Statistics
Matches: 142, Mismatches: 22, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
80 2 0.01
81 137 0.96
82 3 0.02
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTAAAGAATTACCGTTTTACCCTCGATTTACAAAATTACCATAATACACTTGATT
TACAAAATAACCAAAA
Found at i:63709459 original size:27 final size:27
Alignment explanation
Indices: 63709420--63709576 Score: 224
Period size: 27 Copynumber: 5.8 Consensus size: 27
63709410 GTAAAATATC
63709420 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
63709447 AAAATACCCCTGTATGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * *
63709474 GAAATAACCTTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
63709501 GAAATACCCCTTGTAGGGTAGAATTACT
1 GAAATACCCC-TGTAGGGTAGAATTACT
* * *
63709529 AAAATACCCCTATAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
63709556 GAAATACCCTTGTAGGGTAGA
1 GAAATACCCCTGTAGGGTAGA
63709577 TGTAACACCC
Statistics
Matches: 113, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 88 0.78
28 25 0.22
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:63709488 original size:54 final size:54
Alignment explanation
Indices: 63709420--63709576 Score: 224
Period size: 55 Copynumber: 2.9 Consensus size: 54
63709410 GTAAAATATC
* *
63709420 GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTATGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACT
* * *
63709474 GAAATAACCTTGTAGGGTAGAATTACCGAAATACCCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCC-TGTAGGGTAGAATTACT
* * * *
63709529 AAAATACCCCTATAGGGTAGAATTATTGAAATACCCTTGTAGGGTAGA
1 GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGA
63709577 TGTAACACCC
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
54 44 0.49
55 46 0.51
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (54 bp):
GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACT
Found at i:63709534 original size:82 final size:81
Alignment explanation
Indices: 63709419--63709576 Score: 271
Period size: 82 Copynumber: 1.9 Consensus size: 81
63709409 TGTAAAATAT
* *
63709419 CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTATGGTAGAATTACTGAAATAACCT
1 CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACTGAAATAACCT
63709484 TGTAGGGTAGAATTAC
66 TGTAGGGTAGAATTAC
* *
63709500 CGAAATACCCCTTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTATTGAAATACCC
1 CGAAATACCCC-TGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACTGAAATAACC
63709565 TTGTAGGGTAGA
65 TTGTAGGGTAGA
63709577 TGTAACACCC
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
81 11 0.15
82 61 0.85
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (81 bp):
CGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACTGAAATAACCT
TGTAGGGTAGAATTAC
Found at i:63713438 original size:54 final size:54
Alignment explanation
Indices: 63713356--63713461 Score: 203
Period size: 54 Copynumber: 2.0 Consensus size: 54
63713346 TACAGAACAT
*
63713356 GGAACACATCCATAACTTCATTATTGAATATTAGACTTGTTTTATAAATGTCAC
1 GGAACACATCCACAACTTCATTATTGAATATTAGACTTGTTTTATAAATGTCAC
63713410 GGAACACATCCACAACTTCATTATTGAATATTAGACTTGTTTTATAAATGTC
1 GGAACACATCCACAACTTCATTATTGAATATTAGACTTGTTTTATAAATGTC
63713462 GCGCGTATGC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (54 bp):
GGAACACATCCACAACTTCATTATTGAATATTAGACTTGTTTTATAAATGTCAC
Found at i:63721395 original size:41 final size:41
Alignment explanation
Indices: 63721338--63721520 Score: 223
Period size: 41 Copynumber: 4.5 Consensus size: 41
63721328 AGCTTCGGTT
*
63721338 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAATTA
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
*
63721379 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTT
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
* * *
63721420 CGAAGGGCTTTTGAGCCAGTG-TCATAACCGGACTTAGTTC
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
* * * *
63721460 CGAAGGGCCTTCGAGCCAGTGGCCTAAT--CCGAGCTTGGTCT-
1 CGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGT-TA
63721501 CGAAGGGC-TTTGAGCCAGTG
1 CGAAGGGCTTTTGAGCCAGTG
63721521 TTAAGAATCG
Statistics
Matches: 126, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 44 0.35
41 77 0.61
42 1 0.01
43 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
Found at i:63721476 original size:81 final size:81
Alignment explanation
Indices: 63721322--63721521 Score: 244
Period size: 81 Copynumber: 2.5 Consensus size: 81
63721312 TCGGGGTGTA
* * *
63721322 AATCCGAGCTTCGGTTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAATTACGAAGGGC
1 AATCCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTG-TAATAACCGAACTTAATTACGAAGGGC
* *
63721387 TTTTGAGCCAGT-G-CT
65 CTTCGAGCCAGTGGCCT
* * * *
63721402 AATAACCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGTTCCGAAGGG
1 AAT--CCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAATTACGAAGGG
63721467 CCTTCGAGCCAGTGGCCT
64 CCTTCGAGCCAGTGGCCT
* * *
63721485 AATCCGAGCTTGGTCTCGAAGGGC-TTTGAGCCAGTGT
1 AATCCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGT
63721522 TAAGAATCGT
Statistics
Matches: 104, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
80 16 0.15
81 51 0.49
82 32 0.31
83 5 0.05
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (81 bp):
AATCCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGAACTTAATTACGAAGGGCC
TTCGAGCCAGTGGCCT
Found at i:63721542 original size:81 final size:76
Alignment explanation
Indices: 63721322--63721547 Score: 229
Period size: 81 Copynumber: 2.8 Consensus size: 76
63721312 TCGGGGTGTA
* *
63721322 AATCCGAGCTTCGGTTCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAATTACGAAGGGC
1 AATCCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTG-TAATAACCG-GCTT-ATTCCGAAGGGC
* *
63721387 TTTTGAGCCAGTGCT
62 CTTCGAGCCAGTGCT
* * *
63721402 AATAACCGAACTTAGTTTCGAAGGGCTTTTGAGCCAGTGTCATAACCGGACTTAGTTCCGAAGGG
1 AAT--CCGAGCTT-GGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGG-CTTA-TTCCGAAGGG
63721467 CCTTCGAGCCAGTGGCCT
61 CCTTCGAGCCAGT-G-CT
* *
63721485 AATCCGAGCTTGGTCTCGAAGGGC-TTTGAGCCAGTGTTAAGAATCGTGCTTGATTCCGAAGGG
1 AATCCGAGCTTGGT-TCGAAGGGCTTTTGAGCCAGTG-TAATAACCG-GCTT-ATTCCGAAGGG
63721548 TGGTTGTGTC
Statistics
Matches: 123, Mismatches: 13, Indels: 19
0.79 0.08 0.12
Matches are distributed among these distances:
80 18 0.15
81 66 0.54
82 34 0.28
83 5 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (76 bp):
AATCCGAGCTTGGTTCGAAGGGCTTTTGAGCCAGTGTAATAACCGGCTTATTCCGAAGGGCCTTC
GAGCCAGTGCT
Found at i:63729721 original size:19 final size:19
Alignment explanation
Indices: 63729697--63729736 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
63729687 TGTACCGGTA
63729697 CTACGCCGATTTCAATAGC
1 CTACGCCGATTTCAATAGC
63729716 CTACGCCGATTTCAATAGC
1 CTACGCCGATTTCAATAGC
63729735 CT
1 CT
63729737 CGTATCTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.28
Consensus pattern (19 bp):
CTACGCCGATTTCAATAGC
Found at i:63734176 original size:29 final size:29
Alignment explanation
Indices: 63734143--63734200 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
63734133 GTGACGAGAT
63734143 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
63734172 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
63734201 CAGCACTGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:63734215 original size:29 final size:29
Alignment explanation
Indices: 63734145--63734207 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
63734135 GACGAGATTG
**
63734145 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATACA
63734174 GCACTAAGTGTGCATGCTGGAAATATACA
1 GCACTAAGTGTGCATGCTGGAAATATACA
63734203 GCACT
1 GCACT
63734208 GGGTGTGCGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCATGCTGGAAATATACA
Found at i:63735735 original size:24 final size:24
Alignment explanation
Indices: 63735701--63735754 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
63735691 GGGTGTTACA
* *
63735701 TAAATCCTCTCCCTGATCAGCTCC
1 TAAATCATCTCCCTGATCAACTCC
*
63735725 TAAATCATCTCCCTTATCAACTCC
1 TAAATCATCTCCCTGATCAACTCC
63735749 TAAATC
1 TAAATC
63735755 TTCTGCAGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.28, C:0.37, G:0.04, T:0.31
Consensus pattern (24 bp):
TAAATCATCTCCCTGATCAACTCC
Found at i:63738323 original size:20 final size:19
Alignment explanation
Indices: 63738286--63738326 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
63738276 TCTCTTTCTT
*
63738286 TTTGCATTCATCCCATGCA
1 TTTGCATTCATCACATGCA
*
63738305 TTTGCATTGCATCATATGCA
1 TTTGCATT-CATCACATGCA
63738325 TT
1 TT
63738327 AAATTTCACG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.41
Consensus pattern (19 bp):
TTTGCATTCATCACATGCA
Found at i:63742613 original size:54 final size:54
Alignment explanation
Indices: 63742418--63742624 Score: 251
Period size: 55 Copynumber: 3.9 Consensus size: 54
63742408 TTTCCTTTTT
* * *
63742418 GAACTTACCATTGCCATGTCTT-GCATGGTCTTACATGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * *
63742470 GAACTCACCAATGCCATGACATGGCATGGTCTTACATGGGACAT--TTGCCTTATA
1 GAACTCACCAATGCCATGTCTTGGCATGGTCTTACAT--GATATCCTTGCCTTATA
* * *
63742524 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * *
63742579 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTT
63742625 ATCTTACCAA
Statistics
Matches: 132, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
52 18 0.14
53 26 0.20
54 42 0.32
55 46 0.35
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
Found at i:63742658 original size:47 final size:47
Alignment explanation
Indices: 63742603--63742724 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
63742593 CATGCCTTGG
*
63742603 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* * *
63742650 CATGGTCTTACATGGTATACTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
63742697 CATGGTCTTACATGGTATCCTTATCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
63742725 ATGCCAATGC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:63745555 original size:29 final size:29
Alignment explanation
Indices: 63745522--63745595 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
63745512 GTGACGAGAT
63745522 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
63745551 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
63745580 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
63745596 ATTTACTATG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:63745605 original size:24 final size:24
Alignment explanation
Indices: 63745578--63745692 Score: 203
Period size: 24 Copynumber: 4.8 Consensus size: 24
63745568 GCTGGAAATA
63745578 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
63745602 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
63745626 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
63745650 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
*
63745674 TATGGCACTATGGGTGCGA
1 TATGGCACTATGTGTGCGA
63745693 ACATAATAAG
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 88 1.00
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:63745706 original size:48 final size:48
Alignment explanation
Indices: 63745578--63745714 Score: 150
Period size: 48 Copynumber: 2.9 Consensus size: 48
63745568 GCTGGAAATA
* ** * * *
63745578 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGGGTGCGACATAATATAGCACTATGTGTGCGATTCAC
* ** * * *
63745626 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGGGTGCGACATAATATAGCACTATGTGTGCGATTCAC
63745674 TATGGCACTATGGGTGCGAACATAATA-AGCACTATGTGTGC
1 TATGGCACTATGGGTGCG-ACATAATATAGCACTATGTGTGC
63745715 CACATTCGGT
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
48 76 0.94
49 5 0.06
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (48 bp):
TATGGCACTATGGGTGCGACATAATATAGCACTATGTGTGCGATTCAC
Found at i:63745706 original size:72 final size:72
Alignment explanation
Indices: 63745578--63745714 Score: 195
Period size: 72 Copynumber: 1.9 Consensus size: 72
63745568 GCTGGAAATA
* * ** * *
63745578 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGGGTGCGACATAATATAGCACTATGTGTGC
63745643 GATTTAC
66 GATTTAC
*
63745650 TATGGCACTATGTGTGCGATTCGCTATGGCACTATGGGTGCGAACATAATA-AGCACTATGTGTG
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGGGTGCG-ACATAATATAGCACTATGTGTG
63745714 C
65 C
63745715 CACATTCGGT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
72 52 0.91
73 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (72 bp):
TATGGCACTATGTGTGCGATTCACTATGGCACTATGGGTGCGACATAATATAGCACTATGTGTGC
GATTTAC
Found at i:63748630 original size:20 final size:19
Alignment explanation
Indices: 63748607--63748646 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
63748597 ACAAAAACAC
63748607 AAAA-AAAACAGACAAAAAGG
1 AAAAGAAAA-AGA-AAAAAGG
63748627 AAAAGAAAAAGAAAAAAGG
1 AAAAGAAAAAGAAAAAAGG
63748646 A
1 A
63748647 GAGGCCAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 7 0.37
21 4 0.21
ACGTcount: A:0.78, C:0.05, G:0.17, T:0.00
Consensus pattern (19 bp):
AAAAGAAAAAGAAAAAAGG
Found at i:63748690 original size:18 final size:18
Alignment explanation
Indices: 63748667--63748709 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
63748657 TGAAAACCCG
*
63748667 CAAAGGGTGCTTTGAGAC
1 CAAAGGGCGCTTTGAGAC
63748685 CAAAGGGCGCTTTGAGAC
1 CAAAGGGCGCTTTGAGAC
63748703 CAAAGGG
1 CAAAGGG
63748710 GTTTTGAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.35, T:0.16
Consensus pattern (18 bp):
CAAAGGGCGCTTTGAGAC
Found at i:63749558 original size:46 final size:46
Alignment explanation
Indices: 63749495--63749713 Score: 296
Period size: 46 Copynumber: 4.8 Consensus size: 46
63749485 TGAAGAAGCC
* * *
63749495 ACAAATCCTATATCCCTGAGTTGTAGTAGGATGGATTGAAGATGAT
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGATGAT
* * * *
63749541 ACAAATCCCATACCCCTGAATTACAGTGGGATAGATTGAAG-TGAT
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGATGAT
* * * * *
63749586 ACAAATCCCATACCCCTGATTTGCAATGGGATGGATTAAAGAAGAT
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGATGAT
* * *
63749632 ACAAATCCTATTCCCCTGAGCTGCAGTGGGATGGATTGAAGATGGT
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGATGAT
63749678 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGAT
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGAT
63749714 GAAAGAAACC
Statistics
Matches: 149, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
45 40 0.27
46 109 0.73
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (46 bp):
ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGATGAT
Found at i:63749650 original size:91 final size:92
Alignment explanation
Indices: 63749495--63749720 Score: 301
Period size: 91 Copynumber: 2.5 Consensus size: 92
63749485 TGAAGAAGCC
* * * * *
63749495 ACAAATCCTATATCCCTGAGTTGTAGTAGGATGGATTGAAGATGATACAAATCCCATACCCCTGA
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTAAAGAAGATACAAATCCCATACCCCTGA
*
63749560 ATTACAGTGGGATAGATTGAAG-TGAT
66 ACTACAGTGGGATAGATTGAAGATGAT
* * * * *
63749586 ACAAATCCCATACCCCTGATTTGCAATGGGATGGATTAAAGAAGATACAAATCCTATTCCCCTGA
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTAAAGAAGATACAAATCCCATACCCCTGA
* * * *
63749651 GCTGCAGTGGGATGGATTGAAGATGGT
66 ACTACAGTGGGATAGATTGAAGATGAT
*
63749678 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATGAAAGAA
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTAAAGAA
63749721 ACCACAAATT
Statistics
Matches: 115, Mismatches: 19, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
91 73 0.63
92 42 0.37
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (92 bp):
ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTAAAGAAGATACAAATCCCATACCCCTGA
ACTACAGTGGGATAGATTGAAGATGAT
Found at i:63749728 original size:46 final size:45
Alignment explanation
Indices: 63749495--63749753 Score: 252
Period size: 46 Copynumber: 5.6 Consensus size: 45
63749485 TGAAGAAGCC
* * * *
63749495 ACAAATCCTATATCCCTGAGTTGTAGTAGGATGGATTGAAGATGAT
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGA-AAT
* * * * **
63749541 ACAAATCCCATACCCCTGAATTACAGTGGGATAGATTGAAGTGAT
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGAAAT
* * * *
63749586 ACAAATCCCATACCCCTGATTTGCAATGGGATGGATTAAAGAAGAT
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGAA-AT
* * **
63749632 ACAAATCCTATTCCCCTGAGCTGCAGTGGGATGGATTGAAGATGGT
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGA-AAT
*
63749678 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGA-TGAAAGAAACC
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTG-AAGAAA-T
**
63749724 ACAAATTTTAT-CACCCTGAAGTTGCAGTGG
1 ACAAATCCTATAC-CCCTG-AGTTGCAGTGG
63749754 AGCAAATCAG
Statistics
Matches: 177, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
45 42 0.24
46 124 0.70
47 11 0.06
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (45 bp):
ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGAAAT
Found at i:63749741 original size:92 final size:92
Alignment explanation
Indices: 63749495--63749753 Score: 258
Period size: 91 Copynumber: 2.8 Consensus size: 92
63749485 TGAAGAAGCC
* * * * * * * * *
63749495 ACAAATCCTATATCCCTGAGTTGTAGTAGGATGGATTG-AAGATGATACAAATCCCATACCCCTG
1 ACAAATCCCATACCCCTGAGTTGCAATGGGATGGA-TGAAAGAAGACACAAATCCTATTCCCCTG
* *
63749559 AA-TTACAGTGGGATAGATTGAAGTGAT
65 AAGCTGCAGTGGGATAGATTGAAGTGAT
* * *
63749586 ACAAATCCCATACCCCTGATTTGCAATGGGATGGATTAAAGAAGATACAAATCCTATTCCCCTG-
1 ACAAATCCCATACCCCTGAGTTGCAATGGGATGGATGAAAGAAGACACAAATCCTATTCCCCTGA
* *
63749650 AGCTGCAGTGGGATGGATTGAAGATGGT
66 AGCTGCAGTGGGATAGATTGAAG-TGAT
* * **
63749678 ACAAATCCTATACCCCTGAGTTGCAGTGGGATGGATGAAAGAA-ACCACAAATTTTA-TCACCCT
1 ACAAATCCCATACCCCTGAGTTGCAATGGGATGGATGAAAGAAGA-CACAAATCCTATTC-CCCT
*
63749741 GAAGTTGCAGTGG
64 GAAGCTGCAGTGG
63749754 AGCAAATCAG
Statistics
Matches: 140, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
90 2 0.01
91 73 0.52
92 55 0.39
93 10 0.07
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (92 bp):
ACAAATCCCATACCCCTGAGTTGCAATGGGATGGATGAAAGAAGACACAAATCCTATTCCCCTGA
AGCTGCAGTGGGATAGATTGAAGTGAT
Found at i:63750548 original size:44 final size:46
Alignment explanation
Indices: 63750480--63750601 Score: 142
Period size: 44 Copynumber: 2.7 Consensus size: 46
63750470 AAAATGGGGG
* ** *
63750480 ATCTTATCTTCCTGAAGTTACAGTGGAGCAGATC-GAAGCCA-CTA
1 ATCTTATCTCCCAAAAGTTACAGTGGAGCAGATCTGAAGACAGCTA
* *
63750524 GTCTTATCTCCCAAAAGTTGCAGTGGAGCAGA-CTGAAGACAGCTA
1 ATCTTATCTCCCAAAAGTTACAGTGGAGCAGATCTGAAGACAGCTA
* * *
63750569 ATCTTATTTCCCTAAAGTTACAGTGGAACAGAT
1 ATCTTATCTCCCAAAAGTTACAGTGGAGCAGAT
63750602 TTAAGCTACA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 1 0.02
44 33 0.52
45 30 0.47
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (46 bp):
ATCTTATCTCCCAAAAGTTACAGTGGAGCAGATCTGAAGACAGCTA
Found at i:63750780 original size:88 final size:87
Alignment explanation
Indices: 63750666--63750859 Score: 307
Period size: 88 Copynumber: 2.2 Consensus size: 87
63750656 AATTACCAAT
*
63750666 TCTTACCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATTACA
1 TCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATTACA
* *
63750731 TTGGAACAGATCGAAGCCACAA
66 TTGGAACAAATCAAAGCCACAA
*
63750753 TCCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTAC
1 T-CTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATTAC
**
63750818 ATTGGAGTAAATCAAAGCCACAA
65 ATTGGAACAAATCAAAGCCACAA
*
63750841 GTCTCATCTCCTTGAAGTT
1 -TCTTATCTCCTTGAAGTT
63750860 ACAATGGATT
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
87 1 0.01
88 96 0.98
89 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (87 bp):
TCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAAAATTACA
TTGGAACAAATCAAAGCCACAA
Found at i:63750786 original size:44 final size:43
Alignment explanation
Indices: 63750666--63750862 Score: 155
Period size: 44 Copynumber: 4.5 Consensus size: 43
63750656 AATTACCAAT
* * *
63750666 TCTTACCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAA
1 TCTTATCTCCTTGAAGTTACAGCGGAGTAGATCGAAGCCAC-AA
* * * ** **
63750710 TCTCT-TCTCCCTAAAATTACATTGGAACAGATCGAAGCCACAA
1 TCT-TATCTCCTTGAAGTTACAGCGGAGTAGATCGAAGCCACAA
* *
63750753 TCCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAA
1 T-CTTATCTCCTTGAAGTTACAGCGGAGTAGATCGAAGCCAC-AA
* * ** * *
63750798 TCTCT-TCTCCCTGAAATTACATTGGAGTAAATCAAAGCCACAA
1 TCT-TATCTCCTTGAAGTTACAGCGGAGTAGATCGAAGCCACAA
*
63750841 GTCTCATCTCCTTGAAGTTACA
1 -TCTTATCTCCTTGAAGTTACA
63750863 ATGGATTAGA
Statistics
Matches: 116, Mismatches: 30, Indels: 14
0.73 0.19 0.09
Matches are distributed among these distances:
43 6 0.05
44 105 0.91
45 5 0.04
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCTTGAAGTTACAGCGGAGTAGATCGAAGCCACAA
Found at i:63754584 original size:28 final size:27
Alignment explanation
Indices: 63754521--63754590 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
63754511 GTAGTGAGTC
*
63754521 CGCACACTTAGTGCCATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
63754548 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
63754576 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63754591 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:63761235 original size:13 final size:13
Alignment explanation
Indices: 63761219--63761284 Score: 89
Period size: 13 Copynumber: 5.1 Consensus size: 13
63761209 TTTAAACTAA
63761219 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
63761232 ACTTATCAAAAGC
1 ACTTTTCAAAAGC
*
63761245 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
*
63761258 ACTTTTGAAAAGC
1 ACTTTTCAAAAGC
63761271 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
63761284 A
1 A
63761285 TTGCCAAACT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
12 4 0.09
13 37 0.82
14 4 0.09
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:63762972 original size:4 final size:4
Alignment explanation
Indices: 63762963--63762993 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
63762953 TTATTTGAAT
63762963 TTAA TTAA TTAA TTAA TTAAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TT-AA TTAA TTAA TT
63762994 TTAAAATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:63762985 original size:17 final size:17
Alignment explanation
Indices: 63762960--63762993 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
63762950 GAGTTATTTG
*
63762960 AATTTAATTAATTAATT
1 AATTAAATTAATTAATT
63762977 AATTAAATTAATTAATT
1 AATTAAATTAATTAATT
63762994 TTAAAATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTAAATTAATTAATT
Found at i:63765131 original size:10 final size:10
Alignment explanation
Indices: 63765116--63765179 Score: 69
Period size: 10 Copynumber: 6.5 Consensus size: 10
63765106 TTTTACAATT
63765116 TTAAAATTTA
1 TTAAAATTTA
63765126 TTAAAA-TTA
1 TTAAAATTTA
*
63765135 TTAAAAATTA
1 TTAAAATTTA
* *
63765145 TAAAAATATTT
1 TTAAAAT-TTA
63765156 TTAAAATTT-
1 TTAAAATTTA
*
63765165 TTAAAATTAA
1 TTAAAATTTA
63765175 TTAAA
1 TTAAA
63765180 TACTTATGTG
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
9 17 0.37
10 21 0.46
11 8 0.17
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
TTAAAATTTA
Found at i:63765168 original size:49 final size:48
Alignment explanation
Indices: 63765068--63765179 Score: 144
Period size: 49 Copynumber: 2.4 Consensus size: 48
63765058 TTTAATTAAT
*
63765068 TTTTTAAAATTTA--AAAAATAAAAATATATAAAAACTATTTTTACAA
1 TTTTTAAAATTTATTAAAAATAAAAATATATAAAAACTATTTTTAAAA
63765114 -TTTTAAAATTTATTAAAATTATTAAAAAT-TATAAAAA-TATTTTTAAAA
1 TTTTTAAAATTTATTAAAA--A-TAAAAATATATAAAAACTATTTTTAAAA
*
63765162 TTTTTAAAATTAATTAAA
1 TTTTTAAAATTTATTAAA
63765180 TACTTATGTG
Statistics
Matches: 58, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
45 12 0.21
47 4 0.07
48 10 0.17
49 25 0.43
50 7 0.12
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (48 bp):
TTTTTAAAATTTATTAAAAATAAAAATATATAAAAACTATTTTTAAAA
Found at i:63766521 original size:39 final size:39
Alignment explanation
Indices: 63766472--63766546 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
63766462 TTTGTAAGTG
* *
63766472 TTTTTTATAATTTTATAAT-TTTTGTATCTTTATATAGAA
1 TTTTTAATAATTTTATAATAATTTGTAT-TTTATATAGAA
*
63766511 TTTTTAATAATTTTATAATAATTTGTATTTTTTATA
1 TTTTTAATAATTTTATAATAATTTGTATTTTATATA
63766547 ATGTCTATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 25 0.78
40 7 0.22
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.63
Consensus pattern (39 bp):
TTTTTAATAATTTTATAATAATTTGTATTTTATATAGAA
Found at i:63767283 original size:6 final size:6
Alignment explanation
Indices: 63767272--63767297 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
63767262 TTTAATTATA
63767272 AAATTT AAATTT AAATTT AAATTT AA
1 AAATTT AAATTT AAATTT AAATTT AA
63767298 TTAAATTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
AAATTT
Found at i:63772670 original size:16 final size:15
Alignment explanation
Indices: 63772645--63772674 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
63772635 AATTTGTGTG
63772645 TTTTTTTTATTTTTA
1 TTTTTTTTATTTTTA
63772660 TTTTATTTTATTTTT
1 TTTT-TTTTATTTTT
63772675 CACAACTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (15 bp):
TTTTTTTTATTTTTA
Found at i:63774447 original size:23 final size:23
Alignment explanation
Indices: 63774417--63774472 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
63774407 TTATACGCTT
63774417 AAAGTACCTTGGCATTCTTTGGA
1 AAAGTACCTTGGCATTCTTTGGA
63774440 AAAGTACCTTGGCATTCTTTGGA
1 AAAGTACCTTGGCATTCTTTGGA
* *
63774463 TAAGTCCCTT
1 AAAGTACCTT
63774473 TCCGAAATGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (23 bp):
AAAGTACCTTGGCATTCTTTGGA
Found at i:63776563 original size:19 final size:20
Alignment explanation
Indices: 63776534--63776584 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 20
63776524 ATTATAAGTA
63776534 AAAT-TTATTAAAAAATTAT
1 AAATATTATTAAAAAATTAT
63776553 AAATATT-TT--AAAATTAT
1 AAATATTATTAAAAAATTAT
*
63776570 AAATTTTATTAAAAA
1 AAATATTATTAAAAA
63776585 CAACATAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
17 14 0.52
18 2 0.07
19 6 0.22
20 5 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
AAATATTATTAAAAAATTAT
Found at i:63782882 original size:45 final size:46
Alignment explanation
Indices: 63782833--63782952 Score: 170
Period size: 45 Copynumber: 2.6 Consensus size: 46
63782823 TTCAAACCTG
* * *
63782833 TAAGACCATAGTTGAAAGACATTATGGCAATATGACGG-AAACGAA
1 TAAGACCATAGTTGAAAGACACTATGACAAAATGACGGAAAACGAA
* * * *
63782878 TAAGACCATAGTTGAATGACACTATGACAAAATGATGGAAAATGAG
1 TAAGACCATAGTTGAAAGACACTATGACAAAATGACGGAAAACGAA
63782924 TAAGACCATAGTTGAAAGACACTATGACA
1 TAAGACCATAGTTGAAAGACACTATGACA
63782953 TTAAGTCGAA
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
45 33 0.50
46 33 0.50
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGACCATAGTTGAAAGACACTATGACAAAATGACGGAAAACGAA
Found at i:63784849 original size:68 final size:65
Alignment explanation
Indices: 63784739--63784990 Score: 221
Period size: 68 Copynumber: 3.8 Consensus size: 65
63784729 ATACAGATGG
** * * *
63784739 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAGA-
63784802 ATTA
63 A-TA
*
63784806 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC-AGAAT
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGAAT
63784870 A
65 A
* * ** * * * *
63784871 TATGTAGCTAGGTCGCATGCGTTTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAG-A
1 TATGTAGCTAGGTCACATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAA
63784935 TA
64 TA
* * *
63784937 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
63784991 CAAAATTTTG
Statistics
Matches: 152, Mismatches: 25, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 23 0.15
65 22 0.14
66 30 0.20
67 9 0.06
68 47 0.31
69 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (65 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGAATA
Found at i:63784968 original size:66 final size:65
Alignment explanation
Indices: 63784784--63784968 Score: 164
Period size: 66 Copynumber: 2.8 Consensus size: 65
63784774 CATCATGTGT
* * *
63784784 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCACATGGGTGATACT-A-TGTGTACACCA
1 ACAAGAGAGCTAC-AGA-A-TA-AATG-AGCTAGGTCACATGGGTGATACTAAGTGAGGACACCA
63784847 TGTAG
61 TGTAG
* * * * * *
63784852 ACAAGAGAGCTACAGAATATATGTAGCTAGGTCGCATGCGT-TTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGAATAAATG-AGCTAGGTCACATGGGTGATACTAAGTG-AGGACACCATGT
63784916 AG
64 AG
*
63784918 ACAAGAGAGCTAC-GAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACAAGAGAGCTACAGA-ATAAA-TGAGCTAGGTCACATGGGTGATACTAAGTG
63784969 TTCACCATGT
Statistics
Matches: 97, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
63 2 0.02
64 20 0.21
65 20 0.21
66 37 0.38
67 5 0.05
68 13 0.13
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.23
Consensus pattern (65 bp):
ACAAGAGAGCTACAGAATAAATGAGCTAGGTCACATGGGTGATACTAAGTGAGGACACCATGTAG
Found at i:63787485 original size:16 final size:17
Alignment explanation
Indices: 63787464--63787502 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
63787454 GTTGTGGATT
63787464 CTTCTTATTTCC-AAGG
1 CTTCTTATTTCCAAAGG
*
63787480 CTTCTTGTTTCCAAAGG
1 CTTCTTATTTCCAAAGG
63787497 -TTCTTA
1 CTTCTTA
63787503 AGACTTCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.18, C:0.23, G:0.13, T:0.46
Consensus pattern (17 bp):
CTTCTTATTTCCAAAGG
Found at i:63787922 original size:22 final size:21
Alignment explanation
Indices: 63787880--63787923 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
63787870 TGGGTAAACG
*
63787880 TTTTTCAAACGATATTGATTT
1 TTTTTCAAACAATATTGATTT
*
63787901 TTTTTCAAACAATATTGAATT
1 TTTTTCAAACAATATTGATTT
63787922 TT
1 TT
63787924 ACATATTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.52
Consensus pattern (21 bp):
TTTTTCAAACAATATTGATTT
Found at i:63790669 original size:44 final size:44
Alignment explanation
Indices: 63790569--63790690 Score: 142
Period size: 44 Copynumber: 2.8 Consensus size: 44
63790559 AACTCGTACA
* * *
63790569 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCGCATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCGCAAATCG
* * ** *
63790612 ATGCC-ACTATCCCAAACAAGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACGTAAATCGCAAATCG
63790656 ATGCCAACGTCCCAGACGTGGTCTTACAC-TAAATC
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATC
63790691 ACATATCAAA
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 2 0.03
43 29 0.45
44 31 0.48
45 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCGCAAATCG
Found at i:63792642 original size:12 final size:13
Alignment explanation
Indices: 63792625--63792668 Score: 51
Period size: 12 Copynumber: 3.7 Consensus size: 13
63792615 ACTATAAATT
63792625 TTAGAA-ATGAAA
1 TTAGAATATGAAA
63792637 TTAGAATATGAAA
1 TTAGAATATGAAA
*
63792650 --AAAATATGAAA
1 TTAGAATATGAAA
63792661 TTA-AATAT
1 TTAGAATAT
63792669 TATTGAGTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
11 10 0.36
12 11 0.39
13 7 0.25
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (13 bp):
TTAGAATATGAAA
Found at i:63801681 original size:31 final size:31
Alignment explanation
Indices: 63801645--63801706 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
63801635 GTACTCAAGC
63801645 ATACCAACAATTTCACATTCATGAAAGACTA
1 ATACCAACAATTTCACATTCATGAAAGACTA
63801676 ATACCAACAATTTCACATTCATGAAAGACTA
1 ATACCAACAATTTCACATTCATGAAAGACTA
63801707 CTTTGCATTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.45, C:0.23, G:0.06, T:0.26
Consensus pattern (31 bp):
ATACCAACAATTTCACATTCATGAAAGACTA
Found at i:63802379 original size:46 final size:46
Alignment explanation
Indices: 63802186--63802454 Score: 201
Period size: 46 Copynumber: 5.7 Consensus size: 46
63802176 TATAATGCCA
** *
63802186 ATGCTATGTCCCAGACATGGTCTTACACTGG-TT-CATCCATTAAGTCG
1 ATGC-ATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCGAGCCG
* * * * * * *
63802233 ATTCTATGTCCCAGACATGGTTTTACATTGACTCTCACATATCCATGCTG
1 ATGC-ATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCTCGA-GCCG
* * *
63802283 AAGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTTGTAGCCG
1 ATG-CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCG-AGCCG
* *
63802329 ATGCATGTCCCAGGCAT-GTCTTACACTGGCTTACATCTCGAGGCCA
1 ATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-GCCG
* * * *
63802375 ATGCATGTCCCAAACAT-GTCTTACACTAGCTCT-CGTCTCAATGCCG
1 ATGCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGA-GCCG
63802421 ATGCCATGTCCCAGACATGGTCTTACACTGGCTT
1 ATG-CATGTCCCAGACATGGTCTTACACTGGCTT
63802455 TGATAATGTG
Statistics
Matches: 178, Mismatches: 31, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
44 12 0.07
45 14 0.08
46 60 0.34
47 43 0.24
48 14 0.08
49 3 0.02
50 28 0.16
51 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGCCG
Found at i:63802453 original size:94 final size:92
Alignment explanation
Indices: 63802325--63802498 Score: 233
Period size: 94 Copynumber: 1.9 Consensus size: 92
63802315 ACATCTTGTA
* *
63802325 GCCGATGCATGTCCCAGGCATGTCTTACACTGGCTTACAT-CTCGAGGCCAATGCATGTCCCAAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATAAT-GAGGCCAATGCATGTCCCAAA
63802389 CATGTCTTACACTAGCTCTCGTCTCAAT
65 CATGTCTTACACTAGCTCTCGTCTCAAT
** * * * * *
63802417 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTGATAATGTGGCCGATTCATGTCCTAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATAATGAGGCCAATGCATGTCCCAA
63802482 ACATGTCTTACACTAGC
64 ACATGTCTTACACTAGC
63802499 ACACAATTAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 7 0.10
93 13 0.19
94 49 0.70
95 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATAATGAGGCCAATGCATGTCCCAAAC
ATGTCTTACACTAGCTCTCGTCTCAAT
Found at i:63808113 original size:18 final size:18
Alignment explanation
Indices: 63808077--63808114 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
63808067 GAAATATTTA
*
63808077 TTTTGATGTTTTTAGTAT
1 TTTTGATGTTTATAGTAT
63808095 TTTTGATGTATTATA-TAT
1 TTTTGATGT-TTATAGTAT
63808113 TT
1 TT
63808115 AAAAATAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.66
Consensus pattern (18 bp):
TTTTGATGTTTATAGTAT
Found at i:63809925 original size:141 final size:141
Alignment explanation
Indices: 63809752--63810037 Score: 572
Period size: 141 Copynumber: 2.0 Consensus size: 141
63809742 TATGAACAAT
63809752 TACTTTAACATATATAATTCACTCTTTTATTAGGCAAATTTCATAGTCAATTAACTTCGTACGTA
1 TACTTTAACATATATAATTCACTCTTTTATTAGGCAAATTTCATAGTCAATTAACTTCGTACGTA
63809817 ACTGAGCCATTTAGCTCGTTTTCATATTCGGTATTAACTCGATATTGCCCGATGAACGATTCAGA
66 ACTGAGCCATTTAGCTCGTTTTCATATTCGGTATTAACTCGATATTGCCCGATGAACGATTCAGA
63809882 ATTAATAAGGA
131 ATTAATAAGGA
63809893 TACTTTAACATATATAATTCACTCTTTTATTAGGCAAATTTCATAGTCAATTAACTTCGTACGTA
1 TACTTTAACATATATAATTCACTCTTTTATTAGGCAAATTTCATAGTCAATTAACTTCGTACGTA
63809958 ACTGAGCCATTTAGCTCGTTTTCATATTCGGTATTAACTCGATATTGCCCGATGAACGATTCAGA
66 ACTGAGCCATTTAGCTCGTTTTCATATTCGGTATTAACTCGATATTGCCCGATGAACGATTCAGA
63810023 ATTAATAAGGA
131 ATTAATAAGGA
63810034 TACT
1 TACT
63810038 CAGATAGTAA
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 145 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (141 bp):
TACTTTAACATATATAATTCACTCTTTTATTAGGCAAATTTCATAGTCAATTAACTTCGTACGTA
ACTGAGCCATTTAGCTCGTTTTCATATTCGGTATTAACTCGATATTGCCCGATGAACGATTCAGA
ATTAATAAGGA
Done.