Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 214 of 335
Found at i:63811620 original size:96 final size:96
Alignment explanation
Indices: 63811453--63811633 Score: 254
Period size: 96 Copynumber: 1.9 Consensus size: 96
63811443 CGGAAAGAGG
* * * * **
63811453 AATACGATTGAGCTATTACCTTTTGTGCAATATTATTGGTGTAGTTCAAAAGTTCATAATGGTTT
1 AATACAATTGAGATATTACCTTTTGTGCAATACTATTGGTGTAGTTCAAAAGATCATAAAAGTTT
* *
63811518 CTAATGTTCAATTAAATATCTAAATAAAGAT
66 CCAATGTCCAATTAAATATCTAAATAAAGAT
* * * *
63811549 AATACAATTGAGATATTGCCTTTTGTGTAATGCTATTGGTGTAGTTTAAAAGATCATAAAAGTTT
1 AATACAATTGAGATATTACCTTTTGTGCAATACTATTGGTGTAGTTCAAAAGATCATAAAAGTTT
63811614 CCAATGTCCAATTAAATATC
66 CCAATGTCCAATTAAATATC
63811634 CAACTAGAGA
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (96 bp):
AATACAATTGAGATATTACCTTTTGTGCAATACTATTGGTGTAGTTCAAAAGATCATAAAAGTTT
CCAATGTCCAATTAAATATCTAAATAAAGAT
Found at i:63813580 original size:26 final size:26
Alignment explanation
Indices: 63813551--63813606 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
63813541 TGAGTCATTA
63813551 AATT-CTCTTTGAGTTTTCTTTT-CAAG
1 AATTCCTC-TTGAG-TTTCTTTTACAAG
*
63813577 AATTCCTCTTGAGTTTCTTTTAGAAG
1 AATTCCTCTTGAGTTTCTTTTACAAG
63813603 AATT
1 AATT
63813607 TTAACAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 8 0.30
26 16 0.59
27 3 0.11
ACGTcount: A:0.23, C:0.14, G:0.12, T:0.50
Consensus pattern (26 bp):
AATTCCTCTTGAGTTTCTTTTACAAG
Found at i:63816034 original size:19 final size:18
Alignment explanation
Indices: 63816004--63816039 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
63815994 GAGGGAGAAA
63816004 AGAAGAAAGAAATAAAAG
1 AGAAGAAAGAAATAAAAG
63816022 AGAAGAGAAGAAATAAAA
1 AGAAGA-AAGAAATAAAA
63816040 AGTATTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (18 bp):
AGAAGAAAGAAATAAAAG
Found at i:63818127 original size:50 final size:50
Alignment explanation
Indices: 63818052--63818363 Score: 500
Period size: 50 Copynumber: 6.2 Consensus size: 50
63818042 CAATCATTTA
* * *
63818052 GCCGAATACACAAGATCAAATATAACATTACATATGTGCATACCTATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
63818102 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
* * *
63818152 GCCGAATATACAAGATCAAACATAGCATCACATATGTACATACCTTTGA-G
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTAT-ATG
*
63818202 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
** * *
63818252 GATGAATATACAAGATCAAATATAACATCACATATATACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
*
63818302 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
63818352 GCCGAATATACA
1 GCCGAATATACA
63818364 TGGTCGTTTA
Statistics
Matches: 244, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
50 243 1.00
51 1 0.00
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.26
Consensus pattern (50 bp):
GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
Found at i:63820752 original size:50 final size:50
Alignment explanation
Indices: 63820677--63820988 Score: 500
Period size: 50 Copynumber: 6.2 Consensus size: 50
63820667 CAATCATTTA
* * *
63820677 GCCGAATACACAAGATCAAATATAACATTACATATGTGCATACCTATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
63820727 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
* * *
63820777 GCCGAATATACAAGATCAAACATAGCATCACATATGTACATACCTTTGA-G
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTAT-ATG
*
63820827 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
** * *
63820877 GATGAATATACAAGATCAAATATAACATCACATATATACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
*
63820927 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
63820977 GCCGAATATACA
1 GCCGAATATACA
63820989 TGGTCGTTTA
Statistics
Matches: 244, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
50 243 1.00
51 1 0.00
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.26
Consensus pattern (50 bp):
GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
Found at i:63834507 original size:28 final size:27
Alignment explanation
Indices: 63834406--63834507 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 27
63834396 TCAGTGTTAA
* *
63834406 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
*
63834434 CTGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
63834466 ATTGGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
63834494 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
63834508 TATTACAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 27 0.46
30 2 0.03
32 16 0.27
33 7 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:63834527 original size:60 final size:59
Alignment explanation
Indices: 63834407--63834543 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
63834397 CAGTGTTAAC
* *
63834407 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATAT
* *
63834468 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATAT
* *
63834528 TGGGCCTTGGCCATAT
1 TGGGCCTAGCCCATAT
63834544 TAACACAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
59 4 0.06
60 52 0.78
61 11 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATAT
Found at i:63837281 original size:3 final size:3
Alignment explanation
Indices: 63837273--63837323 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
63837263 AAACATACTA
63837273 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
63837321 AAT
1 AAT
63837324 TAAAACATCC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:63843298 original size:57 final size:56
Alignment explanation
Indices: 63843194--63843318 Score: 162
Period size: 57 Copynumber: 2.2 Consensus size: 56
63843184 GTGAAAACGA
* * *
63843194 CACTTAGTGTGCGAATTATTGAGGATGGAACTTAGTGTGCGAAACATCCAGAAATAG
1 CACTTAGTGTGCAAATTATTGAAGATGGAACTTAGTGTACGAAACATCCAG-AATAG
* * * *
63843251 CACTTAGTGTGCAAATTATTGAAGATGGCACTTTGTGTAC-AAGACATCCAGGATGG
1 CACTTAGTGTGCAAATTATTGAAGATGGAACTTAGTGTACGAA-ACATCCAGAATAG
63843307 CACTTAGTGTGC
1 CACTTAGTGTGC
63843319 GATACATCCG
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
56 17 0.28
57 43 0.72
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (56 bp):
CACTTAGTGTGCAAATTATTGAAGATGGAACTTAGTGTACGAAACATCCAGAATAG
Found at i:63843325 original size:28 final size:28
Alignment explanation
Indices: 63843194--63843327 Score: 101
Period size: 28 Copynumber: 4.8 Consensus size: 28
63843184 GTGAAAACGA
** **
63843194 CACTTAGTGTGCGAATTATTGAGGATGG
1 CACTTAGTGTGCGAAACATCCAGGATGG
* * *
63843222 AACTTAGTGTGCGAAACATCCAGAAATAG
1 CACTTAGTGTGCGAAACATCCAG-GATGG
* ** *
63843251 CACTTAGTGTGC-AAATTATTGAAGATGG
1 CACTTAGTGTGCGAAA-CATCCAGGATGG
* *
63843279 CACTTTGTGTAC-AAGACATCCAGGATGG
1 CACTTAGTGTGCGAA-ACATCCAGGATGG
*
63843307 CACTTAGTGTGCGATACATCC
1 CACTTAGTGTGCGAAACATCC
63843328 GTGAAGGCAC
Statistics
Matches: 79, Mismatches: 23, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
28 60 0.76
29 19 0.24
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (28 bp):
CACTTAGTGTGCGAAACATCCAGGATGG
Found at i:63847454 original size:12 final size:12
Alignment explanation
Indices: 63847423--63847447 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63847413 TATATCTTAT
63847423 AAATTCCAACTC
1 AAATTCCAACTC
63847435 AAATTCCAACTC
1 AAATTCCAACTC
63847447 A
1 A
63847448 TCTTCCATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (12 bp):
AAATTCCAACTC
Found at i:63851279 original size:42 final size:39
Alignment explanation
Indices: 63851227--63851361 Score: 171
Period size: 40 Copynumber: 3.3 Consensus size: 39
63851217 GATATCTCGT
**
63851227 ACACTAAGTGCCATTACATAGCCAAAGCTATTTTAATCTCGC
1 ACACTAAGTGCCA-TACATAGCCAAAGCTATTCGAA--TCGC
** *
63851269 ACACTAAGTGCCATACATAATCGAAGCTATCTCGAATCGC
1 ACACTAAGTGCCATACATAGCCAAAGCTAT-TCGAATCGC
*
63851309 ACACTAAGTGCCATATATAGCCAAAGCTATTCCGAATCGC
1 ACACTAAGTGCCATACATAGCCAAAGCTATT-CGAATCGC
63851349 ACACTAAGTGCCA
1 ACACTAAGTGCCA
63851362 CATGTAGCTG
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 1 0.01
40 51 0.62
41 14 0.17
42 16 0.20
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (39 bp):
ACACTAAGTGCCATACATAGCCAAAGCTATTCGAATCGC
Found at i:63859045 original size:79 final size:82
Alignment explanation
Indices: 63858905--63859089 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
63858895 TCGAATGATG
* * *
63858905 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
63858969 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
63858985 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
63859047 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
63859065 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63859090 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:63859097 original size:40 final size:40
Alignment explanation
Indices: 63858906--63859097 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
63858896 CGAATGATGT
* * * * *
63858906 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
63858946 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
63858986 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
63859025 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
63859065 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
63859098 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:63859120 original size:79 final size:79
Alignment explanation
Indices: 63858905--63859122 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
63858895 TCGAATGATG
* * * * ** *
63858905 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
63858968 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
63858985 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
63859050 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
63859065 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
63859123 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:63864455 original size:40 final size:39
Alignment explanation
Indices: 63864374--63864523 Score: 140
Period size: 40 Copynumber: 3.8 Consensus size: 39
63864364 CGAATGATGT
* * * * *
63864374 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATC
1 CGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAATC
* *
63864414 CGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAAATC
1 CGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATC
* * * * *
63864454 CGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACC
1 CGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAATC
*
63864493 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGT
1 CGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
63864524 CACTATAACG
Statistics
Matches: 89, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 33 0.37
40 49 0.55
41 7 0.08
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAATC
Found at i:63864472 original size:39 final size:40
Alignment explanation
Indices: 63864425--63864562 Score: 147
Period size: 39 Copynumber: 3.5 Consensus size: 40
63864415 GGACTAGGAT
*
63864425 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
* * * *
63864464 CCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
* * **
63864504 CCGAAGGCATTCGTGCGAGTCACTATAA--CGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTTAATA-AACCCGGGCTAAGTC
* *
63864543 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
63864563 CGTTATATCC
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 59 0.70
40 23 0.27
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
Found at i:63864546 original size:79 final size:80
Alignment explanation
Indices: 63864374--63864555 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
63864364 CGAATGATGT
* * *
63864374 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTCG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
*
63864438 TGCGAGTTAATAAATC
66 TGCGAGTCAATAAA-C
* **
63864454 CGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
*
63864516 GTGCGAGTCACTATAA-
65 GTGCGAGTCAATA-AAC
**
63864532 CGGGCTTCGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
63864556 AGCGAGTCGT
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 8 0.09
79 62 0.70
80 18 0.20
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCGAGTCAATAAAC
Found at i:63867331 original size:19 final size:20
Alignment explanation
Indices: 63867305--63867352 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
63867295 AAAGTTCATA
*
63867305 ATTTTTTTCAATAAAAATGT
1 ATTTTTTTCAAAAAAAATGT
63867325 ATTTTTTTCAAAAAAAATGT
1 ATTTTTTTCAAAAAAAATGT
63867345 ATTTTTTT
1 ATTTTTTT
63867353 AACTCAATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (20 bp):
ATTTTTTTCAAAAAAAATGT
Found at i:63867697 original size:9 final size:9
Alignment explanation
Indices: 63867683--63867743 Score: 54
Period size: 11 Copynumber: 6.4 Consensus size: 9
63867673 ATGTAGCAAA
63867683 AAAAATTAT
1 AAAAATTAT
63867692 AAAAA-TAT
1 AAAAATTAT
63867700 AAAAA-TATT
1 AAAAATTA-T
*
63867709 TAAAATTAATT
1 AAAAATT-A-T
63867720 AAAAATTAT
1 AAAAATTAT
63867729 AAAAAAATTAT
1 --AAAAATTAT
63867740 AAAA
1 AAAA
63867744 TGTATCAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
8 10 0.22
9 15 0.33
10 2 0.04
11 18 0.40
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:63867939 original size:9 final size:9
Alignment explanation
Indices: 63867925--63868046 Score: 61
Period size: 9 Copynumber: 13.2 Consensus size: 9
63867915 TTCTGGTATG
63867925 ATAATTTTT
1 ATAATTTTT
63867934 ATAATTTTT
1 ATAATTTTT
* *
63867943 TTACGAATTTT
1 ATA--ATTTTT
*
63867954 ATATTTTTT
1 ATAATTTTT
* *
63867963 ACATTTTTT
1 ATAATTTTT
63867972 ATAATTTTCTT
1 ATAA-TTT-TT
* *
63867983 ATACTTTAT
1 ATAATTTTT
*
63867992 A-AAATTTT
1 ATAATTTTT
63868000 ATAATTTTT
1 ATAATTTTT
*
63868009 AT--TTTTC
1 ATAATTTTT
* *
63868016 ATTAAAATTTA
1 A-T-AATTTTT
*
63868027 ATAATTTTA
1 ATAATTTTT
63868036 ATAATTTTT
1 ATAATTTTT
63868045 AT
1 AT
63868047 CTTTTCTCAT
Statistics
Matches: 85, Mismatches: 19, Indels: 18
0.70 0.16 0.15
Matches are distributed among these distances:
7 5 0.06
8 6 0.07
9 51 0.60
10 7 0.08
11 16 0.19
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (9 bp):
ATAATTTTT
Found at i:63869592 original size:30 final size:31
Alignment explanation
Indices: 63869533--63869596 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 31
63869523 ACTTAACAAG
63869533 CAAATGCCTCTAAAATAAAAAAAAAAATTAA
1 CAAATGCCTCTAAAATAAAAAAAAAAATTAA
* * * *
63869564 CAAATGTCTTTAAAAT-AATAAGAAAATTAA
1 CAAATGCCTCTAAAATAAAAAAAAAAATTAA
63869594 CAA
1 CAA
63869597 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 15 0.52
31 14 0.48
ACGTcount: A:0.61, C:0.11, G:0.05, T:0.23
Consensus pattern (31 bp):
CAAATGCCTCTAAAATAAAAAAAAAAATTAA
Found at i:63869652 original size:22 final size:22
Alignment explanation
Indices: 63869627--63869669 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
63869617 TATTCAAACA
63869627 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
63869649 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
63869670 AATAGGGAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:63869673 original size:11 final size:11
Alignment explanation
Indices: 63869634--63869674 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
63869624 ACAATAACAA
63869634 CAAAATAGTAG
1 CAAAATAGTAG
* *
63869645 CAACATAATAG
1 CAAAATAGTAG
*
63869656 TAAAATAGTAG
1 CAAAATAGTAG
63869667 CAAAATAG
1 CAAAATAG
63869675 GGAGGAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:63870481 original size:64 final size:65
Alignment explanation
Indices: 63870377--63870511 Score: 177
Period size: 64 Copynumber: 2.1 Consensus size: 65
63870367 ATCCCTTCCC
* * * * *
63870377 AATCAATTAATGACATGTCAGCTATTTTTTACATGCCATTTACACCTTATTTAATTAGA-TTTTT
1 AATCATTTAATGACATGTCAACTATTTTTTACATGCCATTTACACATCAATTAATTAGATTTTTT
*
63870441 AATCATTTAATGACATGTCAATTAATTTTTT-CAT-CTCATTTACACATCAATTAATTAGATTTT
1 AATCATTTAATGACATGTCAACT-ATTTTTTACATGC-CATTTACACATCAATTAATTAGATTTT
63870504 TT
64 TT
63870506 AATCAT
1 AATCAT
63870512 AAATCCTTAA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
63 1 0.02
64 43 0.69
65 18 0.29
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.46
Consensus pattern (65 bp):
AATCATTTAATGACATGTCAACTATTTTTTACATGCCATTTACACATCAATTAATTAGATTTTTT
Found at i:63875046 original size:19 final size:19
Alignment explanation
Indices: 63875024--63875064 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
63875014 CAGGGATGTA
*
63875024 AAGCAGCAGCAGAGACATG
1 AAGCAGCAACAGAGACATG
*
63875043 AAGCAGCAACAGAGACGTG
1 AAGCAGCAACAGAGACATG
63875062 AAG
1 AAG
63875065 ATAGAACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.20, G:0.32, T:0.05
Consensus pattern (19 bp):
AAGCAGCAACAGAGACATG
Found at i:63875197 original size:64 final size:65
Alignment explanation
Indices: 63875116--63875250 Score: 184
Period size: 64 Copynumber: 2.1 Consensus size: 65
63875106 TTAGGGATTT
*** * *
63875116 ATGATTAAAAAATCTAATTAAATTTTGTGTAAATGAG-ATGTAAAAATTAATTGACATGTCATTA
1 ATGATTAAAAAATCTAATTAAATGAGGTGTAAATG-GCATGTAAAAAATAACTGACATGTCATTA
63875180 A
65 A
*
63875181 ATGATT-AAAAATCTAATTAAATGAGGTGTAAATGGCATGTAAAAAATAGCTGACATGTCATTAA
1 ATGATTAAAAAATCTAATTAAATGAGGTGTAAATGGCATGTAAAAAATAACTGACATGTCATTAA
*
63875245 TTGATT
1 ATGATT
63875251 GGGAAGGGAC
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
63 1 0.02
64 55 0.89
65 6 0.10
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (65 bp):
ATGATTAAAAAATCTAATTAAATGAGGTGTAAATGGCATGTAAAAAATAACTGACATGTCATTAA
Found at i:63876043 original size:42 final size:42
Alignment explanation
Indices: 63875997--63876077 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
63875987 TTTATTTTAT
*
63875997 AAATAAAATAATTATTAATAAAAAATATGAATTAAAAAATGA
1 AAATAAAATAATTATTAATAAAAAACATGAATTAAAAAATGA
* * * * *
63876039 AAATAATATATTTATTAATTAAAAGCATTAATTAAAAAA
1 AAATAAAATAATTATTAATAAAAAACATGAATTAAAAAA
63876078 AAAGCTTGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (42 bp):
AAATAAAATAATTATTAATAAAAAACATGAATTAAAAAATGA
Found at i:63877694 original size:29 final size:28
Alignment explanation
Indices: 63877606--63877708 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 28
63877596 TACTCAATCA
** *
63877606 CGCACACTTAGTGCCACGCGATTCAAGCC
1 CGCACACTTAGTGCCATAC-ATTCAAGCT
* * * *
63877635 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATACA-TTCAAGCT
*
63877664 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATACATT-CAAGCT
*
63877693 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
63877709 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
28 2 0.03
29 56 0.97
ACGTcount: A:0.28, C:0.35, G:0.17, T:0.19
Consensus pattern (28 bp):
CGCACACTTAGTGCCATACATTCAAGCT
Found at i:63882926 original size:58 final size:57
Alignment explanation
Indices: 63882836--63882950 Score: 151
Period size: 58 Copynumber: 2.0 Consensus size: 57
63882826 TTTTGGCCTC
* * * *
63882836 ATTACAGAAAGGATTTAGCCTGGACTGGTAATCTTGATGTAAGCCCTCT-TGAGCATAT
1 ATTACAGAAAGGATTTAGCCCGAACAGGTAATCCTGAT-TAAGCCCT-TATGAGCATAT
* *
63882894 ATTACAGATAGGATTTAGCCCGAACAGGTAATCCTGATTAAGCTCTTATGAGCATAT
1 ATTACAGAAAGGATTTAGCCCGAACAGGTAATCCTGATTAAGCCCTTATGAGCATAT
63882951 GTTGGAAACA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
56 1 0.02
57 16 0.32
58 33 0.66
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (57 bp):
ATTACAGAAAGGATTTAGCCCGAACAGGTAATCCTGATTAAGCCCTTATGAGCATAT
Found at i:63882964 original size:57 final size:58
Alignment explanation
Indices: 63882836--63882969 Score: 130
Period size: 58 Copynumber: 2.3 Consensus size: 58
63882826 TTTTGGCCTC
* * * *
63882836 ATTACAGAA-AGGATTTAGCCTGGACTGGTAATCTTGATGTAAGCCCTCTTGAGCATAT
1 ATTACA-AACAGGATTTAGCCCGAACAGGTAATCCTGATGTAAGCCCTCTTGAGCATAT
* * *
63882894 ATTACAGATAGGATTTAGCCCGAACAGGTAATCCTGAT-TAAGCTCT-TATGAGCATAT
1 ATTACAAACAGGATTTAGCCCGAACAGGTAATCCTGATGTAAGCCCTCT-TGAGCATAT
* ** *
63882951 GTTGGAAACAGGATGTAGC
1 ATTACAAACAGGATTTAGC
63882970 TTGGACAAGT
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
56 1 0.02
57 30 0.48
58 31 0.50
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.29
Consensus pattern (58 bp):
ATTACAAACAGGATTTAGCCCGAACAGGTAATCCTGATGTAAGCCCTCTTGAGCATAT
Found at i:63884647 original size:36 final size:36
Alignment explanation
Indices: 63884600--63884672 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
63884590 CTTACTTTGT
63884600 TTAATTTTTGATGTTTTATAGTTTTGTGAAGCTAGC
1 TTAATTTTTGATGTTTTATAGTTTTGTGAAGCTAGC
*
63884636 TTAATTTTTGATGTTTTATAGTTTTGTGTAGCTAGC
1 TTAATTTTTGATGTTTTATAGTTTTGTGAAGCTAGC
63884672 T
1 T
63884673 CGAATCTAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.21, C:0.05, G:0.19, T:0.55
Consensus pattern (36 bp):
TTAATTTTTGATGTTTTATAGTTTTGTGAAGCTAGC
Found at i:63886473 original size:80 final size:80
Alignment explanation
Indices: 63886389--63886537 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
63886379 TATGGTAACC
* * * *
63886389 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
63886453 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
63886469 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
63886534 CCGG
66 CCGG
63886538 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:63886479 original size:40 final size:38
Alignment explanation
Indices: 63886430--63886537 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
63886420 ATCACGATTT
*
63886430 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
63886470 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
63886510 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
63886538 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:63895661 original size:27 final size:28
Alignment explanation
Indices: 63895605--63895674 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
63895595 AAATTTGTAC
63895605 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
63895633 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
63895660 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63895675 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:63895685 original size:27 final size:27
Alignment explanation
Indices: 63895605--63895686 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
63895595 AAATTTGTAC
* *
63895605 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
63895633 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
63895660 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
63895687 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:63903363 original size:27 final size:28
Alignment explanation
Indices: 63903307--63903376 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
63903297 AAATTTGTAC
63903307 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
63903335 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
63903362 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63903377 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:63903387 original size:27 final size:27
Alignment explanation
Indices: 63903307--63903388 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
63903297 AAATTTGTAC
* *
63903307 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
63903335 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
63903362 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
63903389 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:63908620 original size:21 final size:22
Alignment explanation
Indices: 63908581--63908621 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
63908571 TCGAATTGGT
*
63908581 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCATGTTGCCCCTCC
63908603 CACACGGGCATG-TGCCCCT
1 CACACGGGCATGTTGCCCCT
63908622 GTGTCTAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.44, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGGGCATGTTGCCCCTCC
Found at i:63914039 original size:45 final size:46
Alignment explanation
Indices: 63913932--63914243 Score: 197
Period size: 45 Copynumber: 6.7 Consensus size: 46
63913922 TATTATGAGC
* * * * *
63913932 CAGTGTAAGACAATGTCCGGGACATGGCATCGACATTTGACGA-GAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TATGA-GATGTGT
*
63913978 CTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTATGAGATGTGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGTGT
** * * * *
63914023 CAGTGTAAGACCATGTCTCCGACAT-GCTTCGACTACGAGTTGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGTGT
* * * * * *
63914068 TACTGTAAGACCATGTCTGGGACATGGCATCGGCAAGGATATGTGAGAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGT--G-T
* * * *
63914117 CTAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATGAAGAT-AGC
1 C-AGTGTAAGACCATGTCTGGGACATGGCATC-GGCT--ATG-AGATGTGT
** * *
63914167 CAGTGTAAGACCATGTCTGGGACATGGCATCGAAT-TGAGATATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAG--ATGTGT
* * *
63914214 CAGTGTGAGACCATGTTTGGGAAATGGCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCAT
63914244 TAGCATTCTA
Statistics
Matches: 212, Mismatches: 38, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
43 2 0.01
44 17 0.08
45 59 0.28
46 26 0.12
47 39 0.18
48 3 0.01
49 29 0.14
50 29 0.14
51 3 0.01
53 2 0.01
54 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATGAGATGTGT
Found at i:63914130 original size:50 final size:49
Alignment explanation
Indices: 63914071--63914198 Score: 159
Period size: 49 Copynumber: 2.6 Consensus size: 49
63914061 GTTGTGTTAC
* * *
63914071 TGTAAGACCATGTCTGGGACATGGCATCGGCAAGGAT-ATGTGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAACGATGA--AGAGAGCCAG
* * ** *
63914121 TGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATGAAGATAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAACGATGAAGAGAGCCAG
63914170 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
63914199 AATTGAGATA
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
49 34 0.51
50 32 0.48
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.22
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCAACGATGAAGAGAGCCAG
Found at i:63918114 original size:115 final size:115
Alignment explanation
Indices: 63917908--63918118 Score: 255
Period size: 115 Copynumber: 1.8 Consensus size: 115
63917898 GGGGTGTTAC
* * * ** *
63917908 ATCGACAGTGAGTTACACAGCCTGGCGACATGGCCATGTGACCCACACAGCTTGGACACATAGGC
1 ATCGACAGTAAGTTACACAGCCTGGCAACACGGCCATGTGACCCACACAGCAAGGACACACAGGC
* **
63917973 ATGTCCTTGGCCATGTGGATTTTAAGACTTAGCTTTAAAATTTTAAGGAA
66 ATGTCCTTGGCCATATGGATCCTAAGACTTAGCTTTAAAATTTTAAGGAA
** * * *
63918023 ATCGACAGTAAGTTACATGGCTTGGCAACACGGCCATGTGACCCACACGGCCAAGG-CACACGGG
1 ATCGACAGTAAGTTACACAGCCTGGCAACACGGCCATGTGACCCACACAG-CAAGGACACACAGG
*
63918087 CGTGT-CTTAGGCCATATGGATCCTAAGACTTA
65 CATGTCCTT-GGCCATATGGATCCTAAGACTTA
63918119 ATTTTTCAAA
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
114 3 0.04
115 73 0.92
116 3 0.04
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (115 bp):
ATCGACAGTAAGTTACACAGCCTGGCAACACGGCCATGTGACCCACACAGCAAGGACACACAGGC
ATGTCCTTGGCCATATGGATCCTAAGACTTAGCTTTAAAATTTTAAGGAA
Found at i:63919050 original size:3 final size:3
Alignment explanation
Indices: 63919042--63919105 Score: 78
Period size: 3 Copynumber: 21.7 Consensus size: 3
63919032 TCTTTTTGTT
* *
63919042 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TTAA TAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA
*
63919088 TTA TT- TTA ATA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TT
63919106 TGTTTTATTG
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
2 4 0.08
3 47 0.90
4 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:63919125 original size:22 final size:23
Alignment explanation
Indices: 63919100--63919155 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 23
63919090 ATTTTAATAT
*
63919100 TTTATTTGTTTTATTGATT-TTA
1 TTTATTTGTTTTATTCATTCTTA
* *
63919122 TTTA-CTGCTTTATTCATTCTTA
1 TTTATTTGTTTTATTCATTCTTA
63919144 TTTATTTAGTTT
1 TTTATTT-GTTT
63919156 CTTTACTGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
21 11 0.42
22 11 0.42
23 1 0.04
24 3 0.12
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.68
Consensus pattern (23 bp):
TTTATTTGTTTTATTCATTCTTA
Found at i:63919247 original size:15 final size:15
Alignment explanation
Indices: 63919227--63919256 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63919217 CCATATTATA
*
63919227 CATTGATTTTGTTTT
1 CATTGATTTTATTTT
63919242 CATTGATTTTATTTT
1 CATTGATTTTATTTT
63919257 TGATTTTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.10, T:0.67
Consensus pattern (15 bp):
CATTGATTTTATTTT
Found at i:63933679 original size:37 final size:37
Alignment explanation
Indices: 63933602--63933704 Score: 113
Period size: 37 Copynumber: 2.8 Consensus size: 37
63933592 TGTGAGTACG
* * * *
63933602 TGTAAGACCATAGTTGGGCTATGGCATCGTAATGACA
1 TGTAAGACCATAGCTGGACTATGGCATTGTAATCACA
*
63933639 TGTAAGACCATAGCTGGACTATGGCATTGTGATTCA-A
1 TGTAAGACCATAGCTGGACTATGGCATTGT-AATCACA
63933676 TGTAAGACCAT-GTCTGGGAC-ATGGCATTG
1 TGTAAGACCATAG-CT-GGACTATGGCATTG
63933705 GCATCGATAT
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
36 1 0.02
37 50 0.86
38 7 0.12
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (37 bp):
TGTAAGACCATAGCTGGACTATGGCATTGTAATCACA
Found at i:63933719 original size:48 final size:48
Alignment explanation
Indices: 63933666--63933942 Score: 455
Period size: 48 Copynumber: 5.8 Consensus size: 48
63933656 ACTATGGCAT
* *
63933666 TGTGATTCAATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
63933714 TGTGATCCCATGTAAGACCATGTATAGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
63933762 TGTGATCCCATTTAAGACCATCTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
*
63933810 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
63933858 TGTGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
**
63933906 TGTGATTTCATGTAAGACCATGTCTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
63933943 CAATATGAGA
Statistics
Matches: 211, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 211 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:63933962 original size:42 final size:42
Alignment explanation
Indices: 63933895--63933987 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
63933885 GATATGGCAT
* * * *
63933895 TGGCATCGATATGTGATTTCATGTAAGACCAT-GTCTGGGAC-A
1 TGGCATCAATATGAGACTTCATGTAAGACAATAGT-T-GGACTA
*
63933937 TGGCATCAATATGAGACTTCGTGTAAGACAATAGTTGGACTA
1 TGGCATCAATATGAGACTTCATGTAAGACAATAGTTGGACTA
63933979 TGGCATCAA
1 TGGCATCAA
63933988 GTAAACAAAG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
41 4 0.09
42 38 0.86
43 2 0.05
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGGCATCAATATGAGACTTCATGTAAGACAATAGTTGGACTA
Found at i:63934023 original size:18 final size:18
Alignment explanation
Indices: 63934000--63934038 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
63933990 AAACAAAGTA
*
63934000 CTCGACCCGTAAGATGTT
1 CTCGACCCATAAGATGTT
63934018 CTCGACCCATAAGATGTT
1 CTCGACCCATAAGATGTT
63934036 CTC
1 CTC
63934039 TAGTTTGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (18 bp):
CTCGACCCATAAGATGTT
Found at i:63938799 original size:47 final size:44
Alignment explanation
Indices: 63938732--63938853 Score: 129
Period size: 47 Copynumber: 2.6 Consensus size: 44
63938722 ATATGTGCTG
*
63938732 GTGTGAGACATGTCTGGGACATGCATCGGCCACATT-ATGAGAGAAA
1 GTGTAAGACATGTCTGGGACATGCATCGG---CATTGATGAGAGAAA
* * **
63938778 GTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGATGAGAGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCATT--GATGAGAGAAA
63938826 GTGTAAGACATGTCTGGGACATGCATCG
1 GTGTAAGACATGTCTGGGACATGCATCG
63938854 ACCTCGAGAT
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
45 4 0.06
46 12 0.19
47 26 0.41
48 22 0.34
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (44 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCATTGATGAGAGAAA
Found at i:63938829 original size:48 final size:47
Alignment explanation
Indices: 63938768--63939092 Score: 166
Period size: 49 Copynumber: 6.8 Consensus size: 47
63938758 CGGCCACATT
**
63938768 ATGAGAGAAAGTGTAAGACCATGTCTAGGACATGGCATC-AGCATTGAG
1 ATGAGAGCTAGTGTAAGACC-TGTCTAGGACATGGCATCGA-CATTGAG
* * * *
63938816 ATGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGAG
1 ATGAGAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGACATTGAG
* * *
63938862 ATATACAAGCTAGTGTAAGACCTGTCTGGGACATGGCATC-AGC-TT--G
1 AT-GA-GAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGA-CATTGAG
*** * *
63938908 ATGTTTG-TCAGTGTAAGACCTATCTAGGACATGGCATCGACACTGATAG
1 ATGAGAGCT-AGTGTAAGACCTGTCTAGGACATGGCATCGACATTG--AG
* * * * ** * * *
63938957 ATGAGAACCAGTGTAAGACCTATCTGGGACACAGCATCGACCTCGATAT
1 ATGAGAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGACATTG--AG
* * * * * *
63939006 ATGAAAG-TCAGTGTAAAACCTGTTTGGGACATGGCATTGACTTTGATG
1 ATGAGAGCT-AGTGTAAGACCTGTCTAGGACATGGCATCGACATTGA-G
** *
63939054 -TGCTAGCCAGTGTAAGACCATGTCT-GAGACATGGCATCG
1 ATGAGAGCTAGTGTAAGACC-TGTCTAG-GACATGGCATCG
63939093 GCATCTTACC
Statistics
Matches: 212, Mismatches: 47, Indels: 36
0.72 0.16 0.12
Matches are distributed among these distances:
43 1 0.00
44 29 0.14
45 2 0.01
46 15 0.07
47 29 0.14
48 60 0.28
49 76 0.36
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.25
Consensus pattern (47 bp):
ATGAGAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGACATTGAG
Found at i:63938976 original size:49 final size:49
Alignment explanation
Indices: 63938814--63939092 Score: 193
Period size: 49 Copynumber: 5.8 Consensus size: 49
63938804 ATCAGCATTG
* * * * *
63938814 AGATGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGAG
1 AGATGAAAGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGAT
* * * *
63938862 ATAT-ACAAGCTAGTGTAAGACCTGTCTGGGACATGGCATC-AGCT---T
1 AGATGA-AAGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGAT
*** * *
63938907 -GATGTTTGTCAGTGTAAGACCTATCTAGGACATGGCATCGACACT-GAT
1 AGATGAAAGCCAGTGTAAGACCTATCTGGGACATGGCATCGAC-CTCGAT
**
63938955 AGATGAGAA-CCAGTGTAAGACCTATCTGGGACACAGCATCGACCTCGAT
1 AGATGA-AAGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGAT
* * * * * * * *
63939004 ATATGAAAGTCAGTGTAAAACCTGTTTGGGACATGGCATTGACTTTGAT
1 AGATGAAAGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGAT
** * *
63939053 -G-TGCTAGCCAGTGTAAGACCATGTCTGAGACATGGCATCG
1 AGATGAAAGCCAGTGTAAGACC-TATCTGGGACATGGCATCG
63939093 GCATCTTACC
Statistics
Matches: 180, Mismatches: 39, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
44 30 0.17
45 1 0.01
46 2 0.01
47 16 0.09
48 53 0.29
49 78 0.43
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (49 bp):
AGATGAAAGCCAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGAT
Found at i:63938998 original size:142 final size:140
Alignment explanation
Indices: 63938777--63939091 Score: 363
Period size: 142 Copynumber: 2.2 Consensus size: 140
63938767 TATGAGAGAA
* * * * *
63938777 AGTGTAAGACCATGTCTAGGACATGGCATCAGCATTGAGATGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACCATATCTAGGACATGGCATCAGCACTGAGATGAGAACCAGTGTAAGACATATCTG
* *
63938842 GGACATGCATCGACCTCGAGATAT-ACAAG-CTAGTGTAAGACCTGTCTGGGACATGGCATCAGC
66 GGACAAGCATCGACCTCGAGATATGA-AAGTC-AGTGTAAAACCTGTCTGGGACATGGCATCAGC
63938905 TTGATGTTTGTC
129 TTGATGTTTGTC
*
63938917 AGTGTAAGACC-TATCTAGGACATGGCATC-GACACTGATAGATGAGAACCAGTGTAAGACCTAT
1 AGTGTAAGACCATATCTAGGACATGGCATCAG-CACTG--AGATGAGAACCAGTGTAAGACATAT
* * *
63938980 CTGGGACACAGCATCGACCTCGATATATGAAAGTCAGTGTAAAACCTGTTTGGGACATGGCAT-T
63 CTGGGACA-AGCATCGACCTCGAGATATGAAAGTCAGTGTAAAACCTGTCTGGGACATGGCATCA
* *
63939044 GACTTTGATGTGCTAGCC
127 G-C-TTGATGT--TTGTC
*
63939062 AGTGTAAGACCATGTCT-GAGACATGGCATC
1 AGTGTAAGACCATATCTAG-GACATGGCATC
63939092 GGCATCTTAC
Statistics
Matches: 149, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
138 1 0.01
139 21 0.14
140 11 0.07
141 30 0.20
142 47 0.32
143 9 0.06
145 15 0.10
146 15 0.10
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (140 bp):
AGTGTAAGACCATATCTAGGACATGGCATCAGCACTGAGATGAGAACCAGTGTAAGACATATCTG
GGACAAGCATCGACCTCGAGATATGAAAGTCAGTGTAAAACCTGTCTGGGACATGGCATCAGCTT
GATGTTTGTC
Found at i:63941967 original size:37 final size:37
Alignment explanation
Indices: 63941917--63941992 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
63941907 CAAAAGAGAG
63941917 TAAACATGTGAATAGGCTATATTACAACCTTGAGATT
1 TAAACATGTGAATAGGCTATATTACAACCTTGAGATT
63941954 TAAACATGTGAATAGGCTATATTACAACCTTGAGATT
1 TAAACATGTGAATAGGCTATATTACAACCTTGAGATT
63941991 TA
1 TA
63941993 TAGCTATTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (37 bp):
TAAACATGTGAATAGGCTATATTACAACCTTGAGATT
Found at i:63944696 original size:18 final size:18
Alignment explanation
Indices: 63944675--63944736 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
63944665 TGAGTCCATT
63944675 TGTTTTATTTTATTTTTA
1 TGTTTTATTTTATTTTTA
63944693 TG-TTTATTTTTATTTTCT-
1 TGTTTTA-TTTTATTTT-TA
* *
63944711 TAGATATATTTTATTTTTA
1 T-GTTTTATTTTATTTTTA
*
63944730 TATTTTA
1 TGTTTTA
63944737 AACTATATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
17 4 0.11
18 16 0.46
19 12 0.34
20 3 0.09
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.73
Consensus pattern (18 bp):
TGTTTTATTTTATTTTTA
Found at i:63944700 original size:12 final size:11
Alignment explanation
Indices: 63944677--63944708 Score: 55
Period size: 12 Copynumber: 2.8 Consensus size: 11
63944667 AGTCCATTTG
63944677 TTTTATTTTAT
1 TTTTATTTTAT
63944688 TTTTATGTTTAT
1 TTTTAT-TTTAT
63944700 TTTTATTTT
1 TTTTATTTT
63944709 CTTAGATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:63944728 original size:25 final size:26
Alignment explanation
Indices: 63944695--63944756 Score: 83
Period size: 25 Copynumber: 2.4 Consensus size: 26
63944685 TATTTTTATG
* *
63944695 TTTATTTTTATTTTCTTAGA-TATA-T
1 TTTATTTTTATATT-TTAAACTATATT
63944720 TTTATTTTTATATTTTAAACTATATT
1 TTTATTTTTATATTTTAAACTATATT
63944746 TTTATTTTTAT
1 TTTATTTTTAT
63944757 GGTGGTTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 4 0.12
25 17 0.52
26 12 0.36
ACGTcount: A:0.26, C:0.03, G:0.02, T:0.69
Consensus pattern (26 bp):
TTTATTTTTATATTTTAAACTATATT
Found at i:63946476 original size:51 final size:51
Alignment explanation
Indices: 63946375--63946497 Score: 140
Period size: 51 Copynumber: 2.4 Consensus size: 51
63946365 TCGATCACAC
* * ***
63946375 GTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATACCTTTGGTTACAA
1 GTGTGGTACTATGTGAAGGCCACTATGTGTAAAAGATACCTTTAACTACAA
* * *
63946426 GTGTGGTACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTTTAACTACAA
1 GTGTGGTACTATGTGAAGGCCACTATGTGTAA-AAGATACCTTTAACTACAA
*
63946477 GGGTGGTACTATGTGCAAGGC
1 GTGTGGTACTATGTG-AAGGC
63946498 ACCGGGCATC
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.03
51 54 0.89
52 5 0.08
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (51 bp):
GTGTGGTACTATGTGAAGGCCACTATGTGTAAAAGATACCTTTAACTACAA
Found at i:63948928 original size:27 final size:27
Alignment explanation
Indices: 63948898--63949131 Score: 224
Period size: 27 Copynumber: 8.7 Consensus size: 27
63948888 TCAGTTTACC
* *
63948898 AAATCACCAAAATACTCC-TAGTTTCTA
1 AAATTACCAAAATAC-CCTTGGTTTCTA
63948925 AAATTACCAAAATACCCTTGGTTTAC-A
1 AAATTACCAAAATACCCTTGGTTT-CTA
*
63948952 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTCTA
* *
63948979 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTCTA
* * *
63949006 AAATTACCAAAATACCCCTAGTTT-GA
1 AAATTACCAAAATACCCTTGGTTTCTA
* *
63949032 AAATTACCAAAATACCCCCTT-TTTTGTA
1 AAATTACCAAAATA--CCCTTGGTTTCTA
* * * *
63949060 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTCTA
** ** *
63949087 AAATTACTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTCTA
*
63949114 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
63949132 GATTTACAGA
Statistics
Matches: 177, Mismatches: 23, Indels: 14
0.83 0.11 0.07
Matches are distributed among these distances:
26 21 0.12
27 136 0.77
28 20 0.11
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTCTA
Found at i:63948963 original size:54 final size:54
Alignment explanation
Indices: 63948898--63949130 Score: 274
Period size: 54 Copynumber: 4.3 Consensus size: 54
63948888 TCAGTTTACC
* * * *
63948898 AAATCACCAAAATACTCCTAGTTTCTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
63948952 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
63949006 AAATTACCAAAATACCCCTAGTTTG-AAAATTACCAAAATACCCCCTT-TTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATA--CCCTTGGTTTATA
* ** ** *
63949060 AAATTACCAAAATACCCCT-GATTTGTGAAATTACTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
63949114 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
63949131 TGATTTACAG
Statistics
Matches: 156, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
53 20 0.13
54 119 0.76
55 17 0.11
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:63949058 original size:81 final size:82
Alignment explanation
Indices: 63948898--63949130 Score: 249
Period size: 81 Copynumber: 2.9 Consensus size: 82
63948888 TCAGTTTACC
* * * * * * *
63948898 AAATCACCAAAATACTCCTAGTTTCTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTAGTTT-GAAAATTACCAAA
63948963 ATA--CCCTTGGTTTGTA
65 ATACCCCCTTGGTTTGTA
* *
63948979 AAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGAAAATTACCAAAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTAGTTTGAAAATTACCAAAA
*
63949044 TACCCCCTT-TTTTGTA
66 TACCCCCTTGGTTTGTA
* * * ** * *
63949060 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATA-CCCTTGACTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTAG-TTTG-AAAATTACCAA
*
63949124 AGTACCC
64 AATACCC
63949131 TGATTTACAG
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
80 20 0.16
81 86 0.67
82 22 0.17
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (82 bp):
AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTAGTTTGAAAATTACCAAAA
TACCCCCTTGGTTTGTA
Found at i:63949156 original size:108 final size:108
Alignment explanation
Indices: 63948898--63949130 Score: 308
Period size: 108 Copynumber: 2.2 Consensus size: 108
63948888 TCAGTTTACC
* * * * **
63948898 AAATCACCAAAATACTCCTAGTTTCTAAAATTACCAAAATA--CCCTTGGTTTACAAAATTACCA
1 AAATTACCAAAATACCCCTAGTTT-GAAAATTACCAAAATACCCCCTT-TTTTGTAAAATTACCA
* * **
63948961 AAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
64 AAATACCCCTGATTTGTAAAATTACTAAAATACCCTTGACTTATA
63949006 AAATTACCAAAATACCCCTAGTTTGAAAATTACCAAAATACCCCCTTTTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGAAAATTACCAAAATACCCCCTTTTTTGTAAAATTACCAAA
* * *
63949071 ATACCCCTGATTTGTGAAATTACTGAAATACCCTTGACTTGTA
66 ATACCCCTGATTTGTAAAATTACTAAAATACCCTTGACTTATA
*
63949114 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
63949131 TGATTTACAG
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
107 15 0.14
108 89 0.82
109 5 0.05
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (108 bp):
AAATTACCAAAATACCCCTAGTTTGAAAATTACCAAAATACCCCCTTTTTTGTAAAATTACCAAA
ATACCCCTGATTTGTAAAATTACTAAAATACCCTTGACTTATA
Found at i:63949182 original size:27 final size:27
Alignment explanation
Indices: 63948898--63949184 Score: 188
Period size: 27 Copynumber: 10.7 Consensus size: 27
63948888 TCAGTTTACC
* * *
63948898 AAATCACCAAAATACTCCTAG-TTTCTA
1 AAATTACCAAAATAC-CCTCGATTTATA
* * *
63948925 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
63948952 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
63948979 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* *
63949006 AAATTACCAAAATACCC-CTAGTTT-GA
1 AAATTACCAAAATACCCTCGA-TTTATA
* ** *
63949032 AAATTACCAAAATACCCCCTTTTTTGTA
1 AAATTACCAAAATACCCTC-GATTTATA
* *
63949060 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTATA
** * * *
63949087 AAATTACTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
63949114 AAATTACCAAAGTACCCT-GATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* **** * *
63949140 GAATTACCGTTTTACCCTCAATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
*
63949167 AAATTACCGAAATACCCT
1 AAATTACCAAAATACCCT
63949185 TGTAGGGTAG
Statistics
Matches: 214, Mismatches: 39, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
26 40 0.19
27 155 0.72
28 19 0.09
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:63949301 original size:27 final size:27
Alignment explanation
Indices: 63949168--63949293 Score: 180
Period size: 27 Copynumber: 4.7 Consensus size: 27
63949158 CAATTTACAA
63949168 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
63949195 AATTATCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
63949222 AATTACCTAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
63949249 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
63949276 AATTACCGAGATACCCTT
1 AATTACCGAAATACCCTT
63949294 ATCTGGTAAA
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:63949306 original size:27 final size:27
Alignment explanation
Indices: 63949166--63949309 Score: 137
Period size: 27 Copynumber: 5.3 Consensus size: 27
63949156 CTCAATTTAC
* *
63949166 AAAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCCTATAGGGT
* * * *
63949193 AGAATTATCGAAATACCCCTGTAGGAT
1 AAAATTACCGAAATACCCCTATAGGGT
* * * *
63949220 AGAATTACCTAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCCTATAGGGT
63949247 AGAAA-TACCGAAATACCCCTATAGGGT
1 A-AAATTACCGAAATACCCCTATAGGGT
* * * **
63949274 AGAATTACCGAGATACCCTTATCTGGT
1 AAAATTACCGAAATACCCCTATAGGGT
63949301 AAAATTACC
1 AAAATTACC
63949310 ATTTTGCCCC
Statistics
Matches: 97, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 2 0.02
27 93 0.96
28 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTATAGGGT
Found at i:63949749 original size:22 final size:21
Alignment explanation
Indices: 63949700--63949761 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
63949690 AATTATTCTA
* *
63949700 ATTATGGCTTTGCGCCAACCT
1 ATTATGGCTCTGTGCCAACCT
*
63949721 ACATATGGCTCTGTGCCAACCT
1 A-TTATGGCTCTGTGCCAACCT
*
63949743 GATTATGGCTGTGTGCCAA
1 -ATTATGGCTCTGTGCCAA
63949762 ATGTATTTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.31
Consensus pattern (21 bp):
ATTATGGCTCTGTGCCAACCT
Found at i:63950173 original size:25 final size:25
Alignment explanation
Indices: 63950145--63950207 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
63950135 TTCACATTCC
* **
63950145 GATTCTAATTCTGTTACCTAATACT
1 GATTCTGATTCTGCCACCTAATACT
* *
63950170 GATTCTGATTTTGCCACCTAATTCT
1 GATTCTGATTCTGCCACCTAATACT
*
63950195 GATTTTGATTCTG
1 GATTCTGATTCTG
63950208 ATTCTGATTC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.46
Consensus pattern (25 bp):
GATTCTGATTCTGCCACCTAATACT
Found at i:63950213 original size:18 final size:18
Alignment explanation
Indices: 63950168--63950225 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
63950158 TTACCTAATA
*
63950168 CTGATTCTGATTTTGCCA-C
1 CTGATTCTGATTTTG--ATT
*
63950187 CTAATTCTGATTTTGATT
1 CTGATTCTGATTTTGATT
*
63950205 CTGATTCTGATTCTGATT
1 CTGATTCTGATTTTGATT
63950223 CTG
1 CTG
63950226 TCGCCTTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
17 1 0.03
18 19 0.56
19 14 0.41
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (18 bp):
CTGATTCTGATTTTGATT
Found at i:63950216 original size:43 final size:43
Alignment explanation
Indices: 63950168--63950255 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
63950158 TTACCTAATA
* * *
63950168 CTGATTCTGATTTTGCCACCTAATTCTGATTTTGATTCTGATT
1 CTGATTCTGATTCTGCCACCTAATTCTGATTCTCATTCTGATT
* * * *
63950211 CTGATTCTGATTCTGTCGCCTTATTCTGATTCTCATTTTGATT
1 CTGATTCTGATTCTGCCACCTAATTCTGATTCTCATTCTGATT
63950254 CT
1 CT
63950256 AGTTTTGATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.16, C:0.20, G:0.14, T:0.50
Consensus pattern (43 bp):
CTGATTCTGATTCTGCCACCTAATTCTGATTCTCATTCTGATT
Found at i:63950243 original size:6 final size:6
Alignment explanation
Indices: 63950190--63950225 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
63950180 TTGCCACCTA
*
63950190 ATTCTG ATTTTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
63950226 TCGCCTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.14, G:0.17, T:0.53
Consensus pattern (6 bp):
ATTCTG
Found at i:63959485 original size:20 final size:20
Alignment explanation
Indices: 63959437--63959495 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 20
63959427 ATGAGTACAC
*
63959437 TCAGATGCATCCACAATAAA
1 TCAGATGCATCCACAACAAA
* *
63959457 GCTAGATGCATCCACACCAAA
1 TC-AGATGCATCCACAACAAA
63959478 TCAGATGCAGT-CACAACA
1 TCAGATGCA-TCCACAACA
63959496 CTCTTCAATG
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 14 0.44
21 18 0.56
ACGTcount: A:0.41, C:0.29, G:0.14, T:0.17
Consensus pattern (20 bp):
TCAGATGCATCCACAACAAA
Found at i:63963202 original size:31 final size:31
Alignment explanation
Indices: 63963159--63963222 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
63963149 CTTTTCATAC
*
63963159 TTCATATTTCATAACACTGGGCCGAAGCATT
1 TTCAAATTTCATAACACTGGGCCGAAGCATT
** *
63963190 TTCAAATTTCATATTACTGGGCCGAAGCCTT
1 TTCAAATTTCATAACACTGGGCCGAAGCATT
63963221 TT
1 TT
63963223 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.36
Consensus pattern (31 bp):
TTCAAATTTCATAACACTGGGCCGAAGCATT
Found at i:63963462 original size:24 final size:23
Alignment explanation
Indices: 63963435--63963557 Score: 111
Period size: 24 Copynumber: 5.2 Consensus size: 23
63963425 GGCCTAGCCT
*
63963435 CTTTTAATAACTGGGGTAAAAGTC
1 CTTTTAATAACTGGGGCAAAAG-C
* *
63963459 CTTTTTATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCAAAAGC
* **
63963482 CCTTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCAAAAG-C
* * *
63963506 CTTTTGATAACTAGGGCATAAGC
1 CTTTTAATAACTGGGGCAAAAGC
* * *
63963529 CCTTTAATAACTAGGGCATAAGCC
1 CTTTTAATAACTGGGGCAAAAG-C
63963553 CTTTT
1 CTTTT
63963558 TCACTTCCTC
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
23 41 0.49
24 43 0.51
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (23 bp):
CTTTTAATAACTGGGGCAAAAGC
Found at i:63963495 original size:23 final size:23
Alignment explanation
Indices: 63963437--63963556 Score: 150
Period size: 23 Copynumber: 5.1 Consensus size: 23
63963427 CCTAGCCTCT
* * *
63963437 TTTAATAACTGGGGTAAAAGTCCT
1 TTTAATAACTGGGGCATAAG-CCC
*
63963461 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
63963484 TTTAATAACTGGGGCGTAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
63963507 TTTTGATAACTAGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
63963531 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
63963554 TTT
1 TTT
63963557 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
23 48 0.56
24 37 0.44
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:63963509 original size:47 final size:47
Alignment explanation
Indices: 63963437--63963558 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 47
63963427 CCTAGCCTCT
* * * *
63963437 TTTAATAACTGGGGTAAAAGTCCTTTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTTATAACTAGGGCATAAGCCC
* *
63963484 TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTTATAACTAGGGCATAAGCCC
*
63963531 TTTAATAACTAGGGCATAAGCCCTTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTTT
63963559 CACTTCCTCC
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTTATAACTAGGGCATAAGCCC
Found at i:63963632 original size:20 final size:20
Alignment explanation
Indices: 63963607--63963673 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
63963597 TTATGAATAC
63963607 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
63963627 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
63963647 GTCGTGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63963667 ACCATGT
1 ATCATGT
63963674 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63963742 original size:25 final size:25
Alignment explanation
Indices: 63963710--63963757 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
63963700 ATACATAAAC
* *
63963710 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
63963735 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
63963758 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:63966826 original size:39 final size:39
Alignment explanation
Indices: 63966772--63967316 Score: 856
Period size: 39 Copynumber: 14.0 Consensus size: 39
63966762 AAGACACTGA
63966772 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
63966811 AAATGTATCCGGGCTAAAGCCCCACAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
63966850 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
63966889 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
63966928 AAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
63966967 AAATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * * *
63967006 AAATATATCCAGGCCAAAGTCCCGCAGGCTTCGTACTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
63967045 AAATGTATCCGGGCTAAAGTCCCACAGGCTTTGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
63967084 AAATGTATCTGGGCTAAAGTCCCGCAGGCTTTGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
63967123 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
63967162 AAATGTATCCGGACTAAAGTCCCGTAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
63967201 AAATGTATCCGGGCCAAAGTCCTGCAAGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
63967240 AAATGTATTCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
63967279 AAATGTATCCGGGTTAAAGTCCCGTAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
63967317 ATAATATAAT
Statistics
Matches: 463, Mismatches: 43, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 463 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:63970339 original size:17 final size:19
Alignment explanation
Indices: 63970317--63970355 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
63970307 ACATACTTAC
63970317 AATAAT-ATTTT-TCTAAT
1 AATAATAATTTTATCTAAT
*
63970334 AATAATAATTTTATCTCAT
1 AATAATAATTTTATCTAAT
63970353 AAT
1 AAT
63970356 GCTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 5 0.26
19 8 0.42
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (19 bp):
AATAATAATTTTATCTAAT
Found at i:63972375 original size:31 final size:31
Alignment explanation
Indices: 63972332--63972395 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
63972322 CTTTTCATAC
* * *
63972332 TTCATATTTCATAACACTGGGTCGAAGCCTT
1 TTCAAATTTCATAACACTGAGCCGAAGCCTT
**
63972363 TTCAAATTTCATATTACTGAGCCGAAGCCTT
1 TTCAAATTTCATAACACTGAGCCGAAGCCTT
63972394 TT
1 TT
63972396 ACTGTAAATG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.38
Consensus pattern (31 bp):
TTCAAATTTCATAACACTGAGCCGAAGCCTT
Found at i:63972641 original size:24 final size:24
Alignment explanation
Indices: 63972603--63972754 Score: 218
Period size: 24 Copynumber: 6.4 Consensus size: 24
63972593 CTGGAGGCCT
*
63972603 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
63972628 AGCCCTTTTTATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
63972652 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
63972675 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* * *
63972699 ACCCCTTTTGATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
63972723 AGCCC-TTTCATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
63972746 AGCCCTTTT
1 AGCCCTTTT
63972755 TCACTTCCTC
Statistics
Matches: 116, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
23 43 0.37
24 69 0.59
25 4 0.03
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:63972689 original size:71 final size:71
Alignment explanation
Indices: 63972603--63972754 Score: 241
Period size: 71 Copynumber: 2.1 Consensus size: 71
63972593 CTGGAGGCCT
* * *
63972603 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCC-CTTTTAATAACTGGGGCAAAACCCCTTTTGATAACTAGGGCATAAGCCCTTTAATAACTG
63972668 GGGCATA
65 GGGCATA
* * *
63972675 AGCCCTTTTGATAACTGGGGCATAACCCCTTTTGATAACTAGGGCATAAGCCCTTTCATAACTGG
1 AGCCCTTTTAATAACTGGGGCAAAACCCCTTTTGATAACTAGGGCATAAGCCCTTTAATAACTGG
63972740 GGCATA
66 GGCATA
63972746 AGCCCTTTT
1 AGCCCTTTT
63972755 TCACTTCCTC
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
71 70 0.95
72 4 0.05
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGCAAAACCCCTTTTGATAACTAGGGCATAAGCCCTTTAATAACTGG
GGCATA
Found at i:63972754 original size:47 final size:48
Alignment explanation
Indices: 63972603--63972754 Score: 227
Period size: 47 Copynumber: 3.2 Consensus size: 48
63972593 CTGGAGGCCT
* *
63972603 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTCATAACTGGGGCATA
*
63972652 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTCATAACTGGGGCATA
* * *
63972699 ACCCCTTTTGATAACTAGGGCATAAGCCC-TTTCATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTCATAACTGGGGCATA
63972746 AGCCCTTTT
1 AGCCCTTTT
63972755 TCACTTCCTC
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
47 69 0.73
48 22 0.23
49 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTCATAACTGGGGCATA
Found at i:63972829 original size:20 final size:20
Alignment explanation
Indices: 63972804--63972870 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
63972794 TTATGAATAC
63972804 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
63972824 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63972844 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63972864 ACCATGT
1 ATCATGT
63972871 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63972835 original size:11 final size:11
Alignment explanation
Indices: 63972804--63972859 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
63972794 TTATGAATAC
63972804 ATCATGTGCAT
1 ATCATGTGCAT
*
63972815 ATCA--TACAT
1 ATCATGTGCAT
63972824 ATCATGTGCAT
1 ATCATGTGCAT
*
63972835 ATCA--TACAT
1 ATCATGTGCAT
*
63972844 GTCATGTGCAT
1 ATCATGTGCAT
63972855 ATCAT
1 ATCAT
63972860 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:63972939 original size:25 final size:25
Alignment explanation
Indices: 63972907--63972954 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
63972897 ATACATAAAC
* *
63972907 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
63972932 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
63972955 CATATTTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:63976478 original size:41 final size:41
Alignment explanation
Indices: 63976433--63976550 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
63976423 TGAAAGATAA
63976433 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
63976474 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63976504 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
63976545 ATGTAG
1 ATGTAG
63976551 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:63976489 original size:71 final size:71
Alignment explanation
Indices: 63976401--63976564 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63976391 GAGATGTATC
63976401 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63976466 AGGACA
66 AGGACA
63976472 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
63976537 AGGACA
66 AGGACA
63976543 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
63976565 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:63981196 original size:33 final size:33
Alignment explanation
Indices: 63981154--63981223 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
63981144 ACCCAAGCCT
* *
63981154 ATTCGATTCACATTCGTTCCTATAGCAGTGCAC
1 ATTCAATTCACATTCGTTCCCATAGCAGTGCAC
63981187 ATTCAATTCACATTCGTTCCCATAGCAGTGCAC
1 ATTCAATTCACATTCGTTCCCATAGCAGTGCAC
63981220 ATTC
1 ATTC
63981224 TTCTTTATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.33
Consensus pattern (33 bp):
ATTCAATTCACATTCGTTCCCATAGCAGTGCAC
Found at i:63983730 original size:15 final size:15
Alignment explanation
Indices: 63983654--63983728 Score: 87
Period size: 15 Copynumber: 5.0 Consensus size: 15
63983644 TATAGATAGC
*
63983654 AAGAAAACCAAGATA
1 AAGAAATCCAAGATA
* *
63983669 AAGAAGTCCAAAATA
1 AAGAAATCCAAGATA
*
63983684 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
63983699 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
* * *
63983714 CAGAAGTCCTAGATA
1 AAGAAATCCAAGATA
63983729 CAACACCATA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 50 1.00
ACGTcount: A:0.56, C:0.15, G:0.16, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:63988620 original size:79 final size:81
Alignment explanation
Indices: 63988519--63988703 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
63988509 ACGACTCGCT
** * * *
63988519 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCACACGAATGCCTTC-GGATCCTAACCC
* *
63988582 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
63988599 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCACACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACGAATGCCTTCGGATCCTAACCCGG
*
63988663 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
63988679 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63988704 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:63988703 original size:40 final size:40
Alignment explanation
Indices: 63988519--63988703 Score: 146
Period size: 40 Copynumber: 4.6 Consensus size: 40
63988509 ACGACTCGCT
** * * *
63988519 CAAATGCCTTCGGGACGAAGCCCGGTTATAGTGAC-TCGCA
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * * *
63988559 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTT-GCA
1 C-AAAGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * *
63988599 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCA-CA
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * * *
63988638 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCA
63988679 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
63988704 CATCATTCGA
Statistics
Matches: 114, Mismatches: 22, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 74 0.65
41 9 0.08
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
Found at i:63991971 original size:40 final size:39
Alignment explanation
Indices: 63991948--63992244 Score: 364
Period size: 40 Copynumber: 7.5 Consensus size: 39
63991938 AGTGGTTAAT
*
63991948 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
*
63991988 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
* * *
63992028 TCCGGGCTAAGTCCCGAAGGCGTTCGTGTGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
* * *
63992068 TTCGGGCTAAGTCCCGAAGGCGTTCGTGCGAGTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATA
* *
63992107 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
* *
63992147 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA
* * * *
63992186 ACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA
**
63992226 TCC-GGCTAAACCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
63992245 TACTTGGTTT
Statistics
Matches: 236, Mismatches: 18, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 87 0.37
40 149 0.63
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATA
Found at i:63992115 original size:39 final size:40
Alignment explanation
Indices: 63991948--63992209 Score: 393
Period size: 40 Copynumber: 6.6 Consensus size: 40
63991938 AGTGGTTAAT
63991948 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
63991988 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
* *
63992028 TCCGGGCTAAGTCCCGAAGGCGTTCGTGTGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
* *
63992068 TTCGGGCTAAGTCCCGAAGGCGTTCGTGCGAG-TACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
* * * *
63992107 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
* * * *
63992147 -CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
*
63992186 ACCGGGCTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
63992210 TGAGCTAGTG
Statistics
Matches: 209, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 72 0.34
40 137 0.66
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
Found at i:63992244 original size:79 final size:79
Alignment explanation
Indices: 63991948--63992209 Score: 391
Period size: 79 Copynumber: 3.3 Consensus size: 79
63991938 AGTGGTTAAT
63991948 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTC
63992013 GTGCGAGCTACTATA
66 GTGCGAG-TACTATA
* * * *
63992028 TCCGGGCTAAGTCCCGAAGGCGTTCGTGTGAGCTACTATATTCGGGCTAAGTCCCGAAGGCGTTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTC
63992093 GTGCGAGTACTATA
66 GTGCGAGTACTATA
* * * * *
63992107 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTC
* *
63992171 GTGCAAGTTACCATA
66 GTGCGAG-TACTATA
*
63992186 ACCGGGCTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
63992210 TGAGCTAGTG
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
78 27 0.16
79 71 0.43
80 68 0.41
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTC
GTGCGAGTACTATA
Found at i:63999760 original size:39 final size:40
Alignment explanation
Indices: 63999683--63999887 Score: 260
Period size: 39 Copynumber: 5.2 Consensus size: 40
63999673 TGAATGATAC
* ** *
63999683 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
63999723 CCGGGCTAAGACCC-AAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
63999762 -CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* *
63999801 CCGGGCTAAGACCCGAAGGCATTAGTGCGAGTTGCTATA-
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* ** *
63999840 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
63999880 CC-GGCTAA
1 CCGGGCTAA
63999888 ATTCCGAAGA
Statistics
Matches: 148, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
38 13 0.09
39 79 0.53
40 56 0.38
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:63999859 original size:79 final size:77
Alignment explanation
Indices: 63999683--63999887 Score: 270
Period size: 79 Copynumber: 2.6 Consensus size: 77
63999673 TGAATGATAC
* * *
63999683 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCAAGGCATTAG
*
63999747 TGCGAGTTGTTATA
64 TGCGAGTTGCTATA
* *
63999761 TCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTAG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCC-AAGGCATTAG
63999826 TGCGAGTTGCTATA
64 TGCGAGTTGCTATA
* * *
63999840 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGGGCTAA
63999888 ATTCCGAAGA
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
77 2 0.02
78 50 0.45
79 57 0.51
80 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (77 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCAAGGCATTAGTG
CGAGTTGCTATA
Found at i:64007978 original size:40 final size:40
Alignment explanation
Indices: 64007920--64008107 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
64007910 TGAATGATAC
* * * *
64007920 CCGGGCTAAGTCCTGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
64007960 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
64008000 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
64008040 CCGGGCTAAGACCCGAAGGCATTAGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
64008080 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
64008108 TTATGGTTAT
Statistics
Matches: 136, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
40 134 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:64008117 original size:80 final size:80
Alignment explanation
Indices: 64007916--64008127 Score: 286
Period size: 80 Copynumber: 2.7 Consensus size: 80
64007906 CATTTGAATG
* * * * *
64007916 ATACCCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
* *
64007981 TTCGTGCGAGTTGTT
66 TTAGTGCGAGTTGCT
* * *
64007996 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGC
64008060 ATTAGTGCGAGTTGCT
65 ATTAGTGCGAGTTGCT
*
64008076 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTA-TGGTTATATCC-GGCTAA
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGC-TAGTGGTTATATCCGGGCTAA
64008128 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
79 8 0.07
80 103 0.90
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTAGTGCGAGTTGCT
Found at i:64008368 original size:24 final size:24
Alignment explanation
Indices: 64008341--64008390 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
64008331 GTGAAGTAAG
64008341 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
64008365 TATGATTATGAGAATGTGTATTAA
1 TATGATTATGAGAATGTGTATTAA
64008389 TA
1 TA
64008391 AAGTGATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42
Consensus pattern (24 bp):
TATGATTATGAGAATGTGTATTAA
Found at i:64011784 original size:40 final size:40
Alignment explanation
Indices: 64011761--64012017 Score: 366
Period size: 40 Copynumber: 6.6 Consensus size: 40
64011751 AGTGGCTAAT
64011761 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAG---CTAT-
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
64011797 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
*
64011836 TCCGGGCTAAGTCCCGAAGGCGTTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
*
64011876 TCCGGGCTAAGTCCCGAAGGCGTTCGTGCGAGCTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
* * * *
64011916 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
* * * *
64011956 -CCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
*
64011994 ACCGGGCTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
64012018 TGAGCTAGTG
Statistics
Matches: 206, Mismatches: 8, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
35 19 0.09
36 12 0.06
38 27 0.13
39 34 0.17
40 114 0.55
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATA
Found at i:64012033 original size:158 final size:154
Alignment explanation
Indices: 64011761--64012052 Score: 397
Period size: 158 Copynumber: 1.9 Consensus size: 154
64011751 AGTGGCTAAT
*
64011761 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTATTCCGGGCTAAGTCCGAAGGCATTCGTGCG
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTATTCCGGGCTAAGTCCGAAGGCATTCGTGCA
* * * * **
64011826 AGCTACTATATCCGGGCTAAGTCCCGAAGGCGTTCGTGCGAGCTACTATATCCGGGCTAAGTCCC
66 AGCTACCATAACCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACTATATCC-GGCTAAACCCC
64011891 GAAGGCGTTCGTGCGAGCTACTATA
130 GAAGGCGTTCGTGCGAGCTACTATA
* * * *
64011916 TCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTATTATACCGGGCTAAGTCCGAAGGCATTTGT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTA-T-T-CCGGGCTAAGTCCGAAGGCATTCGT
* * * *
64011981 GCAAGTTACCATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TGGCTATATCCGGCTAAAC
63 GCAAGCTACCATAACCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCT-ACTATATCCGGCTAAAC
64012045 CCCGAAGG
127 CCCGAAGG
64012053 TACTTGGTTT
Statistics
Matches: 118, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
155 32 0.27
156 1 0.01
157 16 0.14
158 69 0.58
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (154 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTATTCCGGGCTAAGTCCGAAGGCATTCGTGCA
AGCTACCATAACCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACTATATCCGGCTAAACCCCG
AAGGCGTTCGTGCGAGCTACTATA
Found at i:64020242 original size:29 final size:29
Alignment explanation
Indices: 64020209--64020339 Score: 192
Period size: 29 Copynumber: 4.6 Consensus size: 29
64020199 GTGACGAGAT
64020209 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
64020238 TGGCACTAAGTGTGCGTGCTGGAAAT-TA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
64020266 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
64020295 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
64020324 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
64020340 GGCTTAAATC
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
28 27 0.29
29 66 0.71
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:64020278 original size:57 final size:58
Alignment explanation
Indices: 64020209--64020339 Score: 201
Period size: 57 Copynumber: 2.3 Consensus size: 58
64020199 GTGACGAGAT
* * *
64020209 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAA-ATTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAGAGTA
* *
64020266 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAGAGTA
*
64020324 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
64020340 GGCTTAAATC
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
57 50 0.76
58 16 0.24
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAGAGTA
Found at i:64020356 original size:58 final size:57
Alignment explanation
Indices: 64020209--64020368 Score: 173
Period size: 57 Copynumber: 2.8 Consensus size: 57
64020199 GTGACGAGAT
* * * *
64020209 TGGCACTAAGTGTGC-GTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATTA
1 TGGCACTAAGTGTGCAG-GCTGGAAATACATGGCACTAAGTGTGCGAGCTCGAAAGTA
* * *
64020266 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCAGGCTGGAAATACATGGCACTAAGTGTGCGAGCTCGAA-AGTA
* * * *
64020324 TGGCACTATGTGTGCGGGCT-TAAATCGCATGGCACTAAGTG-GCGA
1 TGGCACTAAGTGTGCAGGCTGGAAAT-ACATGGCACTAAGTGTGCGA
64020369 AATCGAGTAT
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
57 57 0.64
58 32 0.36
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (57 bp):
TGGCACTAAGTGTGCAGGCTGGAAATACATGGCACTAAGTGTGCGAGCTCGAAAGTA
Found at i:64027700 original size:29 final size:29
Alignment explanation
Indices: 64027667--64027827 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
64027657 GTGACGAGAT
64027667 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
64027696 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
64027725 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
64027754 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
64027783 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
64027812 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64027828 AAATCGAGTA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 115 0.98
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:64036854 original size:23 final size:23
Alignment explanation
Indices: 64036828--64036873 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
64036818 AGGGTATGAA
64036828 AAAGTGTATAAATTTTTGTGTTT
1 AAAGTGTATAAATTTTTGTGTTT
64036851 AAAGTGTATAAATTTTTGTGTTT
1 AAAGTGTATAAATTTTTGTGTTT
64036874 CTAATTGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.52
Consensus pattern (23 bp):
AAAGTGTATAAATTTTTGTGTTT
Found at i:64039880 original size:17 final size:18
Alignment explanation
Indices: 64039853--64039895 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
64039843 AGTGTGTGAC
*
64039853 CTTTTAAAAGTTGA-AAA
1 CTTTTATAAGTTGAGAAA
* *
64039870 TTTTTATAAGTTTAGAAA
1 CTTTTATAAGTTGAGAAA
64039888 CTTTTATA
1 CTTTTATA
64039896 TGTTATCAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (18 bp):
CTTTTATAAGTTGAGAAA
Found at i:64045954 original size:43 final size:45
Alignment explanation
Indices: 64045903--64046036 Score: 164
Period size: 43 Copynumber: 2.9 Consensus size: 45
64045893 TGAGGTATGT
*
64045903 AGCATCTGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGC-A-
1 AGCATCTGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCGAC
* **
64045946 AGCATCTGAGCTCGTTGAGAGGTTTGAGTTCATGGTGGATGCGATC
1 AGCATCTGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCGA-C
*
64045992 ATGTAACATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATG
1 A-G---CATCTGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATG
64046037 TGTTACATGT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
43 38 0.50
44 1 0.01
46 1 0.01
47 1 0.01
50 35 0.46
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.30
Consensus pattern (45 bp):
AGCATCTGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCGAC
Found at i:64047401 original size:20 final size:20
Alignment explanation
Indices: 64047376--64047445 Score: 131
Period size: 20 Copynumber: 3.5 Consensus size: 20
64047366 CGGGTAAGGG
64047376 ACGGGCGTGTCCCAAAGCAC
1 ACGGGCGTGTCCCAAAGCAC
64047396 ACGGGCGTGTCCCAAAGCAC
1 ACGGGCGTGTCCCAAAGCAC
*
64047416 ACAGGCGTGTCCCAAAGCAC
1 ACGGGCGTGTCCCAAAGCAC
64047436 ACGGGCGTGT
1 ACGGGCGTGT
64047446 GAGGCTTAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.24, C:0.33, G:0.31, T:0.11
Consensus pattern (20 bp):
ACGGGCGTGTCCCAAAGCAC
Found at i:64051365 original size:13 final size:13
Alignment explanation
Indices: 64051349--64051381 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
64051339 TTTAATTAAA
*
64051349 TTAGTTAATTAGT
1 TTAGATAATTAGT
64051362 TTAGATAATTAGT
1 TTAGATAATTAGT
64051375 TTA-ATAA
1 TTAGATAA
64051382 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:64051943 original size:17 final size:19
Alignment explanation
Indices: 64051901--64051944 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
64051891 ATGAAATTTT
*
64051901 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
64051920 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
64051938 AA-TATTA
1 AATTATTA
64051945 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:64056948 original size:17 final size:19
Alignment explanation
Indices: 64056906--64056949 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
64056896 ATGAAATTTT
*
64056906 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
64056925 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
64056943 AA-TATTA
1 AATTATTA
64056950 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:64059402 original size:27 final size:26
Alignment explanation
Indices: 64059372--64059428 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
64059362 AATACCTTTA
* *
64059372 TAGGTGGAAAATTTACAAATTTACCCC
1 TAGGAGGAAAA-TTACAAATATACCCC
* **
64059399 TAGGAGTAAAATTACTGATATACCCC
1 TAGGAGGAAAATTACAAATATACCCC
64059425 TAGG
1 TAGG
64059429 GTTAAGGTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.28
Consensus pattern (26 bp):
TAGGAGGAAAATTACAAATATACCCC
Found at i:64067345 original size:16 final size:17
Alignment explanation
Indices: 64067324--64067369 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
64067314 TTGAATTCTC
64067324 CTTTTTTTTA-TTTATT
1 CTTTTTTTTATTTTATT
64067340 C-TTTTTTTATTTTATT
1 CTTTTTTTTATTTTATT
*
64067356 -TTTCTTTTTCTTTT
1 CTTT-TTTTTATTTT
64067370 GAATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 8 0.31
16 9 0.35
17 9 0.35
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (17 bp):
CTTTTTTTTATTTTATT
Found at i:64067357 original size:11 final size:11
Alignment explanation
Indices: 64067334--64067406 Score: 51
Period size: 11 Copynumber: 6.2 Consensus size: 11
64067324 CTTTTTTTTA
64067334 TTTATTCTT-TT
1 TTTATT-TTATT
64067345 TTTATTTTATT
1 TTTATTTTATT
*
64067356 TTTCTTTT-TCT
1 TTTATTTTAT-T
64067367 TTTGAATTTTATT
1 TTT--ATTTTATT
*
64067380 TTTATTTCAATTT
1 TTTATTT-TA-TT
64067393 TATTATTTTATT
1 T-TTATTTTATT
64067405 TT
1 TT
64067407 GAAAGACATA
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
10 3 0.06
11 24 0.48
12 4 0.08
13 12 0.24
14 7 0.14
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.77
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:64067366 original size:25 final size:25
Alignment explanation
Indices: 64067328--64067406 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 25
64067318 ATTCTCCTTT
64067328 TTTTTATTTATTCTTTTTTTATTTTA
1 TTTTTATTT-TTCTTTTTTTATTTTA
* **
64067354 TTTTTCTTTTTC-TTTTGAATTTTA
1 TTTTTATTTTTCTTTTTTTATTTTA
*** *
64067378 TTTTTATTTCAATTTTATTATTTTA
1 TTTTTATTTTTCTTTTTTTATTTTA
64067403 TTTT
1 TTTT
64067407 GAAAGACATA
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
24 18 0.43
25 16 0.38
26 8 0.19
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.77
Consensus pattern (25 bp):
TTTTTATTTTTCTTTTTTTATTTTA
Found at i:64067381 original size:17 final size:17
Alignment explanation
Indices: 64067343--64067396 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
64067333 ATTTATTCTT
* * *
64067343 TTTTTATTTTATTTTTC
1 TTTTTATTTCAATTTTA
* *
64067360 TTTTTCTTTTGAATTTTA
1 TTTTT-ATTTCAATTTTA
64067378 TTTTTATTTCAATTTTA
1 TTTTTATTTCAATTTTA
64067395 TT
1 TT
64067397 ATTTTATTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
17 17 0.57
18 13 0.43
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.76
Consensus pattern (17 bp):
TTTTTATTTCAATTTTA
Found at i:64070266 original size:93 final size:93
Alignment explanation
Indices: 64070154--64070325 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64070144 GCCCATAAGT
* *
64070154 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64070219 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
64070247 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64070312 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
64070326 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64070321 original size:46 final size:46
Alignment explanation
Indices: 64070146--64070321 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
64070136 TGTAACCCGC
* * *
64070146 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
64070192 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
64070242 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
64070285 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
64070322 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Done.