Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 215 of 335
Found at i:64073263 original size:13 final size:13
Alignment explanation
Indices: 64073247--64073279 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
64073237 TTTAATTAAA
*
64073247 TTAGTTAATTAGT
1 TTAGATAATTAGT
64073260 TTAGATAATTAGT
1 TTAGATAATTAGT
64073273 TTA-ATAA
1 TTAGATAA
64073280 ACAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:64077138 original size:25 final size:25
Alignment explanation
Indices: 64077109--64077166 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 25
64077099 AAGTTCCATG
64077109 TAACATATTCATATCAATTGAGTAC
1 TAACATATTCATATCAATTGAGTAC
64077134 TAAC--A-TCATATCAATTGAGTAC
1 TAACATATTCATATCAATTGAGTAC
64077156 TAACATCATTC
1 TAACAT-ATTC
64077167 GAACGTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
22 21 0.72
23 1 0.03
25 5 0.17
26 2 0.07
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.34
Consensus pattern (25 bp):
TAACATATTCATATCAATTGAGTAC
Found at i:64077144 original size:22 final size:22
Alignment explanation
Indices: 64077117--64077164 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
64077107 TGTAACATAT
64077117 TCATATCAATTGAGTACTAACA
1 TCATATCAATTGAGTACTAACA
64077139 TCATATCAATTGAGTACTAACA
1 TCATATCAATTGAGTACTAACA
64077161 TCAT
1 TCAT
64077165 TCGAACGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (22 bp):
TCATATCAATTGAGTACTAACA
Found at i:64077500 original size:43 final size:43
Alignment explanation
Indices: 64077439--64077576 Score: 222
Period size: 43 Copynumber: 3.2 Consensus size: 43
64077429 CCGGCATTAC
* *
64077439 GCCTGCTAAGCACGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
64077482 GCCTGCTAGGTACAAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
64077525 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
64077568 GCCTGCTAG
1 GCCTGCTAG
64077577 TCTTTAAGCC
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 86 1.00
ACGTcount: A:0.30, C:0.32, G:0.25, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:64088046 original size:50 final size:50
Alignment explanation
Indices: 64087989--64088125 Score: 238
Period size: 50 Copynumber: 2.7 Consensus size: 50
64087979 ATATGAAATT
*
64087989 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGTGATC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGTGAAC
*
64088039 CCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGTGAAC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGTGAAC
* *
64088089 CCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
64088126 TTACTATGTG
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 82 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGTGAAC
Found at i:64090665 original size:28 final size:27
Alignment explanation
Indices: 64090610--64090694 Score: 109
Period size: 27 Copynumber: 3.1 Consensus size: 27
64090600 AGCATGGCTG
* * *
64090610 CCAGAACAGATAA-TGTGACATAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
64090636 CCAGATACAGATATTTGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
*
64090664 CCAGAACAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
64090691 CCAG
1 CCAG
64090695 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.10
27 31 0.61
28 15 0.29
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:64091973 original size:23 final size:25
Alignment explanation
Indices: 64091933--64091978 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
64091923 GCAAAGAAAA
* *
64091933 AGAAAAGAGAATAGGAGATGAGAGG
1 AGAAAAGAGAATAAGAGAAGAGAGG
64091958 AGAAAAGA-AA-AAGAGAAGAGA
1 AGAAAAGAGAATAAGAGAAGAGA
64091979 ATGGTCAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.47
24 2 0.11
25 8 0.42
ACGTcount: A:0.61, C:0.00, G:0.35, T:0.04
Consensus pattern (25 bp):
AGAAAAGAGAATAAGAGAAGAGAGG
Found at i:64097221 original size:46 final size:46
Alignment explanation
Indices: 64097171--64097346 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
64097161 TGGTTGAGCA
* *
64097171 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
64097217 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AAAG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
64097262 CATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64097310 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
64097347 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 3 0.03
46 63 0.60
47 27 0.26
48 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:64097327 original size:93 final size:93
Alignment explanation
Indices: 64097168--64097339 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
64097158 GGATGGTTGA
* * * * *
64097168 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
64097233 TGAGTCCGAGTTCGTGAAAAGTAACTAG
66 TGAGTCCGAGTTCGTGAAAAGTAACTAG
* *
64097261 GCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
64097326 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
64097340 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAAAGTAACTAG
Found at i:64104316 original size:46 final size:45
Alignment explanation
Indices: 64104266--64104441 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
64104256 TGGTTGAGCA
*
64104266 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
64104312 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAAAGTAACTAG-GAA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAAG
*
64104359 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
64104405 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64104442 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 64 0.59
47 30 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:64104424 original size:93 final size:93
Alignment explanation
Indices: 64104265--64104434 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
64104255 ATGGTTGAGC
* * *
64104265 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
64104330 AGTCCGAGTTCGTGAAAAGTAACTAGGA
66 AGTCCGAGTTCGTGAAAAGTAACTAGGA
* *
64104358 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
*
64104423 AGTCTGAGTTCG
66 AGTCCGAGTTCG
64104435 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAAAAGTAACTAGGA
Found at i:64112018 original size:36 final size:37
Alignment explanation
Indices: 64111961--64112035 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 37
64111951 TTGGCCTAAT
64111961 GTAAGAAAGAAAAAAAAAGCCATTTTCTTTGTTTAAG
1 GTAAGAAAGAAAAAAAAAGCCATTTTCTTTGTTTAAG
*
64111998 GTAAGAAAG-AAAAAGAAGCCATTTTCTTTGTTTAAG
1 GTAAGAAAGAAAAAAAAAGCCATTTTCTTTGTTTAAG
64112034 GT
1 GT
64112036 TTGGCACCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 28 0.76
37 9 0.24
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.31
Consensus pattern (37 bp):
GTAAGAAAGAAAAAAAAAGCCATTTTCTTTGTTTAAG
Found at i:64112982 original size:43 final size:44
Alignment explanation
Indices: 64112855--64113005 Score: 143
Period size: 43 Copynumber: 3.5 Consensus size: 44
64112845 TATGTGTTAT
* **
64112855 CGTGTAAGACAACCTCTGGGAC-GTTGGCATCGAT-TTGTGATTTA
1 CGTGTAAGACCATGTCTGGGACAG-TGGCATCGATATT-TGATTTA
* * * *
64112899 CGTGTAAGACCATGTCTAGGACATTTGCATCG-TATATGATTT-
1 CGTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTA
*
64112941 CGTGTAA-AGCCCTGTCTGGGACAGTGGCATCGATATTTGA-TTA
1 CGTGTAAGA-CCATGTCTGGGACAGTGGCATCGATATTTGATTTA
* *
64112984 CATGTAAGACCACGTCTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
64113006 GTTGGAATTG
Statistics
Matches: 86, Mismatches: 15, Indels: 13
0.75 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.33
43 30 0.35
44 27 0.31
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTA
Found at i:64123881 original size:40 final size:40
Alignment explanation
Indices: 64123815--64123965 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
64123805 AAATTGAATG
* * *
64123815 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
64123854 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
64123894 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
64123934 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
64123966 ACGTGATTAA
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:64128052 original size:27 final size:27
Alignment explanation
Indices: 64128019--64128464 Score: 535
Period size: 27 Copynumber: 16.6 Consensus size: 27
64128009 AAAGTACTCC
64128019 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
64128046 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
64128073 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
64128100 C-AGTTTACAGAATTATTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
64128127 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
64128154 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
64128181 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
64128208 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
64128235 C-AGTTTACAGAATTACTATTTTAACCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
64128262 CGATTTATAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
64128288 CTAATTTACATAATTACCATTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* *
64128316 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
64128343 CGATTTACAGAA-TACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
64128369 CAATTTACA-AATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
64128395 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
64128422 TGATTTACAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
64128449 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
64128465 TAAAATACCC
Statistics
Matches: 362, Mismatches: 47, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
25 2 0.01
26 45 0.12
27 311 0.86
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:64129802 original size:9 final size:9
Alignment explanation
Indices: 64129790--64129866 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
64129780 TTTGATAAAC
64129790 ATGATATGT
1 ATGATATGT
*
64129799 ATGATATGCAC
1 ATGATATG--T
64129810 ATGATATGT
1 ATGATATGT
*
64129819 ATGATATGCAC
1 ATGATATG--T
*
64129830 ATGACATGT
1 ATGATATGT
*
64129839 ATGATATGCAC
1 ATGATATG--T
64129850 ATGATATGT
1 ATGATATGT
64129859 ATGATATG
1 ATGATATG
64129867 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:64129815 original size:11 final size:11
Alignment explanation
Indices: 64129799--64129870 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
64129789 CATGATATGT
64129799 ATGATATGCAC
1 ATGATATGCAC
*
64129810 ATGATATG--T
1 ATGATATGCAC
64129819 ATGATATGCAC
1 ATGATATGCAC
* *
64129830 ATGACATG--T
1 ATGATATGCAC
64129839 ATGATATGCAC
1 ATGATATGCAC
*
64129850 ATGATATG--T
1 ATGATATGCAC
64129859 ATGATATGCAC
1 ATGATATGCAC
64129870 A
1 A
64129871 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:64129878 original size:20 final size:20
Alignment explanation
Indices: 64129788--64129870 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
64129778 ATTTTGATAA
64129788 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
64129808 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
64129828 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
64129848 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
64129868 ACA
1 ACA
64129871 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:64129981 original size:24 final size:24
Alignment explanation
Indices: 64129925--64130114 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
64129915 GAGGAAGTGA
64129925 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
64129948 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
64129972 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
64129996 AAAAGGGCTTATGCCCCAGTTACC
1 AAAAGGGCTTATGCCCCAGTTATC
*
64130020 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
64130043 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
64130067 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
64130091 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
64130115 ATGATAAAGC
Statistics
Matches: 151, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
23 43 0.28
24 97 0.64
25 11 0.07
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:64129994 original size:47 final size:47
Alignment explanation
Indices: 64129925--64130093 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
64129915 GAGGAAGTGA
64129925 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* *
64129972 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTACC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
64130020 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
64130067 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
64130094 AGAGGCTAGG
Statistics
Matches: 113, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
47 69 0.61
48 44 0.39
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:64130048 original size:71 final size:71
Alignment explanation
Indices: 64129924--64130114 Score: 269
Period size: 71 Copynumber: 2.7 Consensus size: 71
64129914 GGAGGAAGTG
* *
64129924 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
64129989 AGTTAT
66 AGTTAT
* * *
64129995 CAAAAGGGCTTATGCCCCAGTTACCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
64130059 CAGTTAT
65 CAGTTAT
* *
64130066 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTACGCC-CCAGTTAT
64130115 ATGATAAAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
71 75 0.70
72 32 0.30
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (71 bp):
AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:64130343 original size:31 final size:31
Alignment explanation
Indices: 64130308--64130371 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
64130298 CGTTTACCGT
*
64130308 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
64130339 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
64130370 AA
1 AA
64130372 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:64132245 original size:17 final size:18
Alignment explanation
Indices: 64132213--64132249 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
64132203 CGTACATGAG
*
64132213 AGAAACAAAAACAAAGAA
1 AGAAACAAAAAAAAAGAA
64132231 AGAAA-AAAAAAAAAGAA
1 AGAAACAAAAAAAAAGAA
64132248 AG
1 AG
64132250 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAACAAAAAAAAAGAA
Found at i:64132257 original size:17 final size:18
Alignment explanation
Indices: 64132213--64132249 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
64132203 CGTACATGAG
*
64132213 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAACAAAGAA
64132231 AGAAAAAAAAA-AAAGAA
1 AGAAAAAAAAACAAAGAA
64132248 AG
1 AG
64132250 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAACAAAGAA
Found at i:64133547 original size:40 final size:40
Alignment explanation
Indices: 64133488--64133594 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
64133478 CAATTGAATG
* * * *
64133488 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
64133528 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
64133568 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
64133595 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:64133614 original size:40 final size:39
Alignment explanation
Indices: 64133529--64133655 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
64133519 CTGGAAATTA
* * *
64133529 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
64133567 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
64133609 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
64133649 TATCCGG
1 TATCCGG
64133656 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:64140286 original size:17 final size:18
Alignment explanation
Indices: 64140254--64140290 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
64140244 CGTACATGAG
*
64140254 AGAAACAAAAACAAAGAA
1 AGAAACAAAAAAAAAGAA
64140272 AGAAA-AAAAAAAAAGAA
1 AGAAACAAAAAAAAAGAA
64140289 AG
1 AG
64140291 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAACAAAAAAAAAGAA
Found at i:64140298 original size:17 final size:18
Alignment explanation
Indices: 64140254--64140290 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
64140244 CGTACATGAG
*
64140254 AGAAACAAAAACAAAGAA
1 AGAAAAAAAAACAAAGAA
64140272 AGAAAAAAAAA-AAAGAA
1 AGAAAAAAAAACAAAGAA
64140289 AG
1 AG
64140291 GAAGAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (18 bp):
AGAAAAAAAAACAAAGAA
Found at i:64141588 original size:40 final size:40
Alignment explanation
Indices: 64141529--64141635 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
64141519 CAATTGAATG
* * * *
64141529 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
64141569 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
64141609 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
64141636 CGTGCAAGTC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:64141655 original size:40 final size:39
Alignment explanation
Indices: 64141570--64141696 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
64141560 CTGGAAATTA
* * *
64141570 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
64141608 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* * *
64141650 TATCCGGGCTAAGACCCGAGGGCATTCGTGCATGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
64141690 TATCCGG
1 TATCCGG
64141697 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 70 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:64144834 original size:49 final size:49
Alignment explanation
Indices: 64144757--64144970 Score: 338
Period size: 49 Copynumber: 4.4 Consensus size: 49
64144747 ATCAAGATTC
* * * *
64144757 GTGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
64144806 GCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
64144855 GTGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
64144904 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
64144953 GTGAAAGTGTATATATAT
1 GTGAAAGTGTATGTATAT
64144971 ATGTGGTAAA
Statistics
Matches: 154, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 154 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:64154073 original size:30 final size:30
Alignment explanation
Indices: 64154039--64154099 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
64154029 TTCCCGAGCC
*
64154039 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATACAAAAGTT
* * * *
64154069 TAGGGGCAAAATTGTAATTTTACAAAAGTT
1 TAGGGGAAAAAGTGTAAATATACAAAAGTT
64154099 T
1 T
64154100 GAGTTAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.43, C:0.05, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATACAAAAGTT
Found at i:64154678 original size:68 final size:68
Alignment explanation
Indices: 64154564--64154690 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 68
64154554 CAGATGGTAT
* *
64154564 GTAGCTAGGTCACATGTGTAATACAGGATGTATACCATGTGTACAAGAGAACTACGAGACATTAT
1 GTAGCTAGGTCACATGGGTAATACAGGATGTACACCATGTGTACAAGAGAACTACGAGACATTAT
64154629 GAG
66 GAG
* * * *
64154632 GTAGCTAGGTCGCATGGGTGATACTATG-TGTACACCATGTAG-ACAAGAGAGCTACGAGA
1 GTAGCTAGGTCACATGGGTAATAC-AGGATGTACACCATGT-GTACAAGAGAACTACGAGA
64154691 TAAATGTAGC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
68 48 0.94
69 3 0.06
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.24
Consensus pattern (68 bp):
GTAGCTAGGTCACATGGGTAATACAGGATGTACACCATGTGTACAAGAGAACTACGAGACATTAT
GAG
Found at i:64160692 original size:24 final size:24
Alignment explanation
Indices: 64160660--64160707 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
64160650 TCAAGTGCAC
64160660 ATGTCTTAATGAAAATACCATAAT
1 ATGTCTTAATGAAAATACCATAAT
*
64160684 ATGTCTTAATGTAAATACCATAAT
1 ATGTCTTAATGAAAATACCATAAT
64160708 TCATATTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.35
Consensus pattern (24 bp):
ATGTCTTAATGAAAATACCATAAT
Found at i:64160716 original size:24 final size:24
Alignment explanation
Indices: 64160665--64160716 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
64160655 TGCACATGTC
* *
64160665 TTAATGAAAATACCATAATATGTC
1 TTAATGAAAATACCATAATATATA
*
64160689 TTAATGTAAATACCATAAT-TCATA
1 TTAATGAAAATACCATAATAT-ATA
64160713 TTAA
1 TTAA
64160717 CTTAGTGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.37
Consensus pattern (24 bp):
TTAATGAAAATACCATAATATATA
Found at i:64164444 original size:20 final size:20
Alignment explanation
Indices: 64164419--64164461 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
64164409 ATTTTGATAA
64164419 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
64164439 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
64164459 ACA
1 ACA
64164462 CGAGATGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:64164469 original size:20 final size:20
Alignment explanation
Indices: 64164426--64164469 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
64164416 TAAACATGAT
* *
64164426 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACACGAG
64164446 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAG
64164466 ATGT
1 ATGT
64164470 TCATAAATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACACGAG
Found at i:64164643 original size:23 final size:23
Alignment explanation
Indices: 64164521--64164778 Score: 403
Period size: 24 Copynumber: 11.0 Consensus size: 23
64164511 AGTGAAAAAA
*
64164521 GGCTTATGCCCCAGTTATCAAAAG
1 GGCTTATGCCCCAGTTAT-TAAAG
*
64164545 GGCTTATGCCCCAGTTATAAGAAG
1 GGCTTATGCCCCAGTTATTA-AAG
*
64164569 GGCTTATGCCCCAGTTATCAAAAG
1 GGCTTATGCCCCAGTTAT-TAAAG
64164593 GGCTTATGCCCCAGTTATTAAAAG
1 GGCTTATGCCCCAGTTATT-AAAG
64164617 GGCTTATGCCCCAGTTATTAAAG
1 GGCTTATGCCCCAGTTATTAAAG
64164640 GGCTTATGCCCCAGTTATGATAAAG
1 GGCTTATGCCCCAGTTAT--TAAAG
64164665 GGCTTATGCCCCAGTTATTAAA-
1 GGCTTATGCCCCAGTTATTAAAG
64164687 GGCTTATGCCCCAGTTATTAAAG
1 GGCTTATGCCCCAGTTATTAAAG
64164710 GGCTTATGCCCCAGTTATTAAAG
1 GGCTTATGCCCCAGTTATTAAAG
64164733 GGCTTATGCCCCAGTTATTAAAAAG
1 GGCTTATGCCCCAGTTATT--AAAG
64164758 GGCTT-TGCCCCAGTTATTAAA
1 GGCTTATGCCCCAGTTATTAAA
64164779 AGAGGCTAGG
Statistics
Matches: 225, Mismatches: 1, Indels: 18
0.92 0.00 0.07
Matches are distributed among these distances:
22 25 0.11
23 70 0.31
24 96 0.43
25 34 0.15
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
GGCTTATGCCCCAGTTATTAAAG
Found at i:64165030 original size:30 final size:31
Alignment explanation
Indices: 64164996--64165054 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
64164986 TACAGTAAAG
*
64164996 GCTTCGG-CCAGTAATATGAAATTTGAAAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAAAA
**
64165026 GCTTCGGCCCAGTGTTATGAAATATGAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAA
64165055 TATGAAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 7 0.28
31 18 0.72
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (31 bp):
GCTTCGGCCCAGTAATATGAAATATGAAAAA
Found at i:64165053 original size:7 final size:7
Alignment explanation
Indices: 64165041--64165068 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
64165031 GGCCCAGTGT
64165041 TATGAAA
1 TATGAAA
64165048 TATGAAA
1 TATGAAA
64165055 TATGAAA
1 TATGAAA
64165062 TATGAAA
1 TATGAAA
64165069 AGGGCTATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
TATGAAA
Found at i:64167743 original size:79 final size:82
Alignment explanation
Indices: 64167603--64167787 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
64167593 TCGAATGATG
* * *
64167603 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
64167667 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
64167683 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
64167745 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
64167763 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64167788 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:64167795 original size:40 final size:40
Alignment explanation
Indices: 64167604--64167795 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
64167594 CGAATGATGT
* * * * *
64167604 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
64167644 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
64167684 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
64167723 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
64167763 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
64167796 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:64167818 original size:79 final size:79
Alignment explanation
Indices: 64167603--64167820 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
64167593 TCGAATGATG
* * * * ** *
64167603 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
64167666 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
64167683 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
64167748 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
64167763 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
64167821 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:64176180 original size:29 final size:29
Alignment explanation
Indices: 64176118--64176220 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
64176108 GTGACGAGAT
* * *
64176118 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
64176147 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
64176176 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
64176205 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64176221 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:64184066 original size:43 final size:43
Alignment explanation
Indices: 64183946--64184074 Score: 122
Period size: 43 Copynumber: 3.0 Consensus size: 43
64183936 GGCTCGTACA
* *
64183946 ATGCCAATGTCCCAAATGTGGTCTTACAT-ATAATCACATATCG
1 ATGCCAACGTCCCAAATGTGGTCTTAC-TCAAAATCACATATCG
* * * * * *
64183989 ATGCC-ACTATCCCGACA-G-GGTTTTACACTTAAATCACAAATCG
1 ATGCCAAC-GTCCC-AAATGTGGTCTTACTC-AAAATCACATATCG
64184032 ATGCCAACGTCCCAAATGTGGTCTTACTCAAAATCACATATCG
1 ATGCCAACGTCCCAAATGTGGTCTTACTCAAAATCACATATCG
64184075 GAATCCTATG
Statistics
Matches: 65, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
42 10 0.15
43 43 0.66
44 12 0.18
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAAATGTGGTCTTACTCAAAATCACATATCG
Found at i:64191086 original size:29 final size:29
Alignment explanation
Indices: 64191053--64191213 Score: 250
Period size: 29 Copynumber: 5.6 Consensus size: 29
64191043 CCTCCGAACT
** * * *
64191053 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
64191082 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
64191111 CGCACACCTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64191140 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64191169 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64191198 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
64191214 ATCTCGTCAC
Statistics
Matches: 121, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 121 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64191115 original size:87 final size:86
Alignment explanation
Indices: 64190995--64191213 Score: 226
Period size: 87 Copynumber: 2.5 Consensus size: 86
64190985 TACTCGATTT
** * * * *
64190995 CGCACACTTAGTGCCACGTAATTT-AAGCTCGCACACACAGTGCCATA-CCCTCCGAACTCGCAC
1 CGCACACTTAGTGCCAAAT-ATTTCCAGCACGCACAC-CAGTGCCATATACCTCC-AACACGCAC
* * *
64191058 ACCCAGTGCCGTATTTTTCCAGCT
63 ACCCAGTGCCATATATTTCCAGCA
* ** *
64191082 TGCACACTTAGTGCCAAATATTTCCAGCACGCACACCTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACACC-AGTGCCATATACCTCCAACACGCACAC
**
64191147 TTAGTGCCATATATTTCCAGCA
65 CCAGTGCCATATATTTCCAGCA
* *
64191169 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCAAATATTTCCAGCACGCACAC-CAGTGCCA
64191214 ATCTCGTCAC
Statistics
Matches: 110, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
86 5 0.05
87 102 0.93
88 3 0.03
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.25
Consensus pattern (86 bp):
CGCACACTTAGTGCCAAATATTTCCAGCACGCACACCAGTGCCATATACCTCCAACACGCACACC
CAGTGCCATATATTTCCAGCA
Found at i:64198391 original size:29 final size:29
Alignment explanation
Indices: 64198358--64198460 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
64198348 CCTCCGAACT
** * * *
64198358 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
64198387 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64198416 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64198445 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
64198461 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64219946 original size:23 final size:24
Alignment explanation
Indices: 64219901--64219950 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
64219891 TCTAAACATC
64219901 ATATACAAAGTAACTTACATGTAT
1 ATATACAAAGTAACTTACATGTAT
64219925 ATATACAAAGTAAC-TACATGTAT
1 ATATACAAAGTAACTTACATGTAT
64219948 ATA
1 ATA
64219951 AAACCAACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 12 0.46
24 14 0.54
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (24 bp):
ATATACAAAGTAACTTACATGTAT
Found at i:64226345 original size:29 final size:29
Alignment explanation
Indices: 64226311--64226471 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
64226301 TACTCGATTT
** * *
64226311 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
64226340 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
64226369 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
64226398 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64226427 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64226456 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
64226472 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64233845 original size:29 final size:29
Alignment explanation
Indices: 64233811--64233971 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
64233801 TACTCGATTT
** * *
64233811 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
64233840 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
64233869 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
64233898 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64233927 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64233956 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
64233972 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64241353 original size:26 final size:25
Alignment explanation
Indices: 64241317--64241372 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 25
64241307 AAAATTCTTA
64241317 ATGAGTCTGTTCTCTAGAAAGATAG
1 ATGAGTCTGTTCTCTAGAAAGATAG
64241342 ATGAGTTCTGTTCTCTAGAAAGATAG
1 ATGAG-TCTGTTCTCTAGAAAGATAG
64241368 ATGAG
1 ATGAG
64241373 ACCATTATCC
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 5 0.17
26 25 0.83
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (25 bp):
ATGAGTCTGTTCTCTAGAAAGATAG
Found at i:64243295 original size:43 final size:43
Alignment explanation
Indices: 64243230--64243314 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
64243220 TACATGAATC
* *
64243230 GCATCCACCATGAACTCAGACCTCTCAACGAGTTCGAATGCTT
1 GCATCCACAATGAACTCAGACCTCTCAACGAGCTCGAATGCTT
* ** *
64243273 GCATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATGCT
1 GCATCCACAATGAACTCAGACCTCTCAACGAGCTCGAATGCT
64243315 ACATAACTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.24
Consensus pattern (43 bp):
GCATCCACAATGAACTCAGACCTCTCAACGAGCTCGAATGCTT
Found at i:64254309 original size:45 final size:45
Alignment explanation
Indices: 64254251--64254342 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
64254241 CTATACTTTT
*
64254251 CATAAATGACAATTTTGTCCCTAAGATCGAAAAATAAAATTCATG
1 CATAAATGACAATTTTGTCCCTAAGATCGAAAAACAAAATTCATG
* *
64254296 CATAAATGACAATTTTGTCCCTAGGATCGGAAAACAAAATTCATG
1 CATAAATGACAATTTTGTCCCTAAGATCGAAAAACAAAATTCATG
64254341 CA
1 CA
64254343 ATCTCATCCT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.27
Consensus pattern (45 bp):
CATAAATGACAATTTTGTCCCTAAGATCGAAAAACAAAATTCATG
Found at i:64261695 original size:22 final size:21
Alignment explanation
Indices: 64261655--64261695 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
64261645 CACTAGACAC
* *
64261655 AGGGGCACATGCCCGTGTGGG
1 AGGGGCACACGCCCATGTGGG
64261676 AGGGGCAACACGCCCATGTG
1 AGGGGC-ACACGCCCATGTG
64261696 ACCAATTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.20, C:0.27, G:0.41, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGGG
Found at i:64262920 original size:47 final size:47
Alignment explanation
Indices: 64262849--64263216 Score: 283
Period size: 47 Copynumber: 7.8 Consensus size: 47
64262839 GGGGTAGAAT
* *
64262849 GCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCATATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAA
* * *
64262896 GTCGATGCCATGTCCCAGACATGGTCTTACACT-GACT-ATCATCATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCAT-ATC--TCAA
* * **
64262945 GCTGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCACATATC-CGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG--CT--CATATCTCAA
* * * *
64262995 GCCGATGCCATGTCCCAGACATGGTCTTAAACT-G-ACACATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTC-AA
* * * * *
64263041 GCTGATG-CATGTCCCAGCCAT-GTCTTACACTAGCTTATGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTC-AA
* * * * *
64263087 GCTGATG-CATGTCCCAGACA-CGTCTTATACTAGCT-TTCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAA
*
64263132 TGCCGATGCCATGTCCCAAACAT-GTCTTACACTAGCTC-TCATCTCAA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAA
* **
64263179 TGCCAATGTTATGTCCCAGACATGGTCTTACACTAGCT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
64263217 TATAATAACC
Statistics
Matches: 262, Mismatches: 39, Indels: 39
0.77 0.11 0.11
Matches are distributed among these distances:
44 14 0.05
45 17 0.06
46 58 0.22
47 88 0.34
48 14 0.05
49 33 0.13
50 31 0.12
51 2 0.01
53 3 0.01
54 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAA
Found at i:64263045 original size:96 final size:98
Alignment explanation
Indices: 64262852--64263208 Score: 327
Period size: 96 Copynumber: 3.8 Consensus size: 98
64262842 GTAGAATGCC
* * *
64262852 GATGCCATGTCCCAGATATGGTCTTACACT-G-GCTCATATCTCAAGTCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGCCGATGCCATGTCCCAGA
* *
64262915 CATGGTCTTACACTGACTATCATCATTGAGGCT
66 CATGGTCTTAAACTGACTATCATCATCGAGGCT
* **
64262948 GATGCCATATCCCAGACATGGTCTTACACTAGCTCTCACATATC-CGCGCCGATGCCATGTCCCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATATCTCAAGCCGATGCCATGTCCCA
64263012 GACATGGTCTTAAACTGAC-A-CATC-TCGTA-GCT
64 GACATGGTCTTAAACTGACTATCATCATCG-AGGCT
* * * *
64263044 GATG-CATGTCCCAGCCAT-GTCTTACACTAGCT-T-ATGTCTCGAGGCTGATG-CATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC-AAGCCGATGCCATGTCCCAG
* * * * * * *
64263104 ACA-CGTCTTATACT-AGCTTTCGTC-TCAATGCC
65 ACATGGTCTTAAACTGA-CTATCATCATCGAGGCT
* * **
64263136 GATGCCATGTCCCAAACAT-GTCTTACACTAGCTCTC--ATCTCAATGCCAATGTTATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAA-GCCGATGCCATGTCCCAG
64263198 ACATGGTCTTA
65 ACATGGTCTTA
64263209 CACTAGCTTA
Statistics
Matches: 216, Mismatches: 28, Indels: 35
0.77 0.10 0.13
Matches are distributed among these distances:
89 1 0.00
90 14 0.06
91 15 0.07
92 18 0.08
93 36 0.17
94 27 0.12
95 18 0.08
96 37 0.17
97 6 0.03
98 3 0.01
99 35 0.16
100 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (98 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGCCGATGCCATGTCCCAGA
CATGGTCTTAAACTGACTATCATCATCGAGGCT
Found at i:64263084 original size:46 final size:46
Alignment explanation
Indices: 64262899--64263217 Score: 202
Period size: 46 Copynumber: 6.7 Consensus size: 46
64262889 ATCTCAAGTC
* * *
64262899 GATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCATTGAGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTTCGTC-TCGAGGCT
* * * * * *
64262948 GATGCCATATCCCAGACATGGTCTTACACTAGCTCTCACATATCCG-CGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT-T-TCGTCT-CGAGGCT
* * *
64262998 GATGCCATGTCCCAGACATGGTCTTAAACT-GAC--ACATCTCGTA-GCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTTCGTCTCG-AGGCT
*
64263044 GATGCATGTCCCAGCCATGTCTTACACTAGCTTAT-GTCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTT-TCGTCTCGAGGCT
* * * * *
64263090 GATGCATGTCCCAGACACGTCTTATACTAGCTTTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTCTCGAGGCT
* * * * * *
64263136 GATGCCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCAATGCC
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTTTCGTCTCGAGGCT
* *
64263183 AATGTTATGTCCCAGACATGGTCTTACACTAGCTT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTT
64263218 ATAATAACCC
Statistics
Matches: 224, Mismatches: 31, Indels: 31
0.78 0.11 0.11
Matches are distributed among these distances:
44 10 0.04
45 18 0.08
46 61 0.27
47 52 0.23
48 14 0.06
49 32 0.14
50 33 0.15
51 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTTCGTCTCGAGGCT
Found at i:64266301 original size:28 final size:28
Alignment explanation
Indices: 64266232--64266332 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
64266222 GACAAGATTG
* * * *
64266232 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
64266262 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
64266290 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
64266319 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64266333 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:64268166 original size:13 final size:12
Alignment explanation
Indices: 64268150--64268183 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
64268140 GCCCAAATGT
64268150 CAAAATTTTTTAA
1 CAAAATTTTTT-A
64268163 CAAAA-TTTTTA
1 CAAAATTTTTTA
64268174 CAAAATTTTT
1 CAAAATTTTT
64268184 ATAGAATCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 6 0.30
12 9 0.45
13 5 0.25
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (12 bp):
CAAAATTTTTTA
Found at i:64268176 original size:11 final size:11
Alignment explanation
Indices: 64268150--64268184 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
64268140 GCCCAAATGT
64268150 CAAAATTTTTTAA
1 CAAAA-TTTTT-A
64268163 CAAAATTTTTA
1 CAAAATTTTTA
64268174 CAAAATTTTTA
1 CAAAATTTTTA
64268185 TAGAATCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 12 0.55
12 5 0.23
13 5 0.23
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (11 bp):
CAAAATTTTTA
Found at i:64270261 original size:38 final size:38
Alignment explanation
Indices: 64270205--64270307 Score: 107
Period size: 38 Copynumber: 2.7 Consensus size: 38
64270195 GGCACGAAGG
* * * * * *
64270205 CCCGAATATAATCCCAGCACTAGGCTTGCAGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
*
64270243 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
* ** *
64270281 CCCAGATATTTTACCAGCATGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCT
64270308 ACGGGTCTTT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
Found at i:64272296 original size:15 final size:16
Alignment explanation
Indices: 64272276--64272315 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
64272266 GTTATTGTCT
64272276 TTTAGTTGAG-ATTGA
1 TTTAGTTGAGAATTGA
64272291 TTTAGTTGAGCAATTGA
1 TTTAGTTGAG-AATTGA
*
64272308 TTGAGTTG
1 TTTAGTTG
64272316 TATGTATGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.45
17 12 0.55
ACGTcount: A:0.25, C:0.03, G:0.28, T:0.45
Consensus pattern (16 bp):
TTTAGTTGAGAATTGA
Found at i:64274747 original size:47 final size:47
Alignment explanation
Indices: 64274689--64274857 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
64274679 GCATTGGCAC
*
64274689 TAAGACAAGGATACCATGTAAGGCCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
64274736 TAAGACAAGGATATCATGTAAGACCATGTTGGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
64274783 TAAGACAAGGATACCATGTAAGACCATGTTTTGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * *
64274830 TAAGATAAAGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
64274858 CCAAGACATG
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 113 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:64274900 original size:54 final size:54
Alignment explanation
Indices: 64274839--64275030 Score: 194
Period size: 55 Copynumber: 3.6 Consensus size: 54
64274829 GTAAGATAAA
* *
64274839 GATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGACAAG
1 GATATCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
* ** *
64274893 GAAATCATGTAAGACCATTTCAAGACATAGG-ATTTATGAGTTACTATAAGGCAA-
1 GATATCATGTAAGACCATGCCAAGACAT-GGCATTGATGAGTT-CTATAAGGCAAG
* * *
64274947 -ATGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAG
1 GATAT--CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
* * * **
64275001 GATACCACGTAAAACCATGTGAAGACATGG
1 GATATCATGTAAGACCATGCCAAGACATGG
64275031 AAATGGTAAG
Statistics
Matches: 111, Mismatches: 20, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
53 31 0.28
54 37 0.33
55 43 0.39
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.23
Consensus pattern (54 bp):
GATATCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
Found at i:64276335 original size:26 final size:26
Alignment explanation
Indices: 64276299--64276355 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
64276289 GGTAAGTTGT
64276299 ATGTAAATAATACAACTACAATGCTA
1 ATGTAAATAATACAACTACAATGCTA
64276325 ATGTAAATAATACAACTACAATGCTA
1 ATGTAAATAATACAACTACAATGCTA
64276351 ATGTA
1 ATGTA
64276356 TGTATTCGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.28
Consensus pattern (26 bp):
ATGTAAATAATACAACTACAATGCTA
Found at i:64276562 original size:46 final size:46
Alignment explanation
Indices: 64276504--64276915 Score: 327
Period size: 46 Copynumber: 8.8 Consensus size: 46
64276494 GATTTCTTGT
* * * *
64276504 GTGCTAGTGTAAGATATGTCTGGGACATGCATCGGGCATATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
*
64276550 GTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
* *
64276596 GTGCCAGTGTAAGACGTGTCTGGGACATGCATCAGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
* * * *
64276642 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGCAGA-GATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CCACATTATGA
* ** **
64276690 GTGCCAATGTAAGACATGTCTGGGACATGCATCGGCCTTGAAAATG-
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-ACATTATGA
* * * * *
64276736 GCAGCCAGTGTAAGACGTGTCTGGGACATGCATTGGCTAAGAGTT-T--
1 G-TGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CACA-TTATGA
* * * * *
64276782 -TGCTAGTGTAAGGCATGTCCGGGACATGCATCAG-CACGTATATACGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC--AT-TATGA
* * * * * *
64276829 GAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGATGAGGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGA
*
64276878 -TAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GT-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
64276916 AACTTATCCA
Statistics
Matches: 297, Mismatches: 50, Indels: 35
0.78 0.13 0.09
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 29 0.10
45 1 0.00
46 107 0.36
47 64 0.22
48 32 0.11
49 52 0.18
50 8 0.03
51 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
Found at i:64276844 original size:187 final size:184
Alignment explanation
Indices: 64276511--64276865 Score: 457
Period size: 187 Copynumber: 1.9 Consensus size: 184
64276501 TGTGTGCTAG
* * ** *
64276511 TGTAAGATATGTCTGGGACATGCATCGGGCATATTATGAGTGCCAGTGTAAGACATGTCTGGGAC
1 TGTAAGACATGTCTGGGACATGCATCGGCCATAAAATGAGAGCCAGTGTAAGACATGTCTGGGAC
* * * *
64276576 ATGCATTGGCCACATTATGAGTGCCAGTGTAAGACGTGTCTGGGACATGCATCAGCCACATTATG
66 ATGCATTGGCAACATTAT--GTGCCAGTGTAAGACATGTCCGGGACATGCATCAGCCACATTACG
* *
64276641 AGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGCAGAGATGAGTGCCAA
129 AGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGTGCAGAGATGAGTGCCAA
* *
64276697 TGTAAGACATGTCTGGGACATGCATCGGCCTTGAAAATG-GCAGCCAGTGTAAGACGTGTCTGGG
1 TGTAAGACATGTCTGGGACATGCATCGGCCAT-AAAATGAG-AGCCAGTGTAAGACATGTCTGGG
* * *
64276761 ACATGCATTGGCTAAGAGTT-T-TGCTAGTGTAAGGCATGTCCGGGACATGCATCAG-CACGTAT
64 ACATGCATTGGC-AACA-TTATGTGCCAGTGTAAGACATGTCCGGGACATGCATCAGCCAC--AT
64276823 ATACGAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGG
125 -TACGAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGG
64276866 CCTCGATGAG
Statistics
Matches: 146, Mismatches: 16, Indels: 13
0.83 0.09 0.07
Matches are distributed among these distances:
184 3 0.02
185 30 0.21
186 32 0.22
187 76 0.52
188 3 0.02
189 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (184 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCATAAAATGAGAGCCAGTGTAAGACATGTCTGGGAC
ATGCATTGGCAACATTATGTGCCAGTGTAAGACATGTCCGGGACATGCATCAGCCACATTACGAG
AGCTAGTATAAGACCATGTCTGGGACATGGCATCGGTGCAGAGATGAGTGCCAA
Found at i:64277764 original size:55 final size:55
Alignment explanation
Indices: 64277677--64277810 Score: 178
Period size: 55 Copynumber: 2.4 Consensus size: 55
64277667 GCACTTAAAA
* * **
64277677 TTTTAAAGTCAGTATTGTACACGGCCAGGCCACACGGGCATGTGCCATGTTCGTG
1 TTTTAAAGTCAGTATTGTACACGGCCAAGCCACACGAGCATGTGCCATGGCCGTG
* * **
64277732 TTTTAAAGTCAGTATTGTACATGGGCAAGCCACACGAGTGTGTGCCATGGCCGTG
1 TTTTAAAGTCAGTATTGTACACGGCCAAGCCACACGAGCATGTGCCATGGCCGTG
* *
64277787 TTTTAAAGTCAGTGTTGCACACGG
1 TTTTAAAGTCAGTATTGTACACGG
64277811 GATAAAGGCA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 68 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (55 bp):
TTTTAAAGTCAGTATTGTACACGGCCAAGCCACACGAGCATGTGCCATGGCCGTG
Found at i:64284202 original size:46 final size:46
Alignment explanation
Indices: 64284135--64284540 Score: 349
Period size: 46 Copynumber: 8.7 Consensus size: 46
64284125 CTTGTCTGCT
64284135 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCC
* *
64284181 AGTGTAAGACATGTCTGGGACATACATCGACCACATTATGAGTGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCC
*
64284227 AGTGTAAGACGTGTCTGGGACATGCATCGGCCACATTATGAGTGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCC
* ** * *
64284273 AGTGTAAGACCATGTCTGGGACATGGCATTGGTGTAGA-GATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CCACATTATGAGTGCC
* * ** *
64284321 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGACAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGTGCC
* * ** ** * * * *
64284368 AGTATTAGATGTGTCTGGGACATGCATCAACTA-A-GA-GTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGTGCC
* * * * *
64284412 AGTGTAAGACATGTCCGGGACATGCATCAG-CATGTATATATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCA--CAT-TATGAGTGCC
* *
64284460 AGTATAAGACCATGTCTGGGACATGGCATCGGCCTCA--ATGAGGATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGA-G-T-GCC
*
64284509 AGTGTAAGACCATGTCTTGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
64284541 TAACTTATCC
Statistics
Matches: 293, Mismatches: 49, Indels: 33
0.78 0.13 0.09
Matches are distributed among these distances:
43 2 0.01
44 29 0.10
45 1 0.00
46 108 0.37
47 60 0.20
48 37 0.13
49 49 0.17
50 6 0.02
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCC
Found at i:64284483 original size:187 final size:187
Alignment explanation
Indices: 64284135--64284540 Score: 439
Period size: 187 Copynumber: 2.2 Consensus size: 187
64284125 CTTGTCTGCT
* ** *
64284135 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCCAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGACAGCCAGTATAAGACATGTCTGGG
* * * * *
64284200 ACATACATCGACCACATTATGAGTGCCAGTGTAAGACGTGTCTGGGACATGCATCGGCCACATTA
66 ACATACATCAACCACATGATGAGTGCCAGTGTAAGACATGTCCGGGACATGCATCAGCCACATTA
* * * ** *
64284265 TGAGTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGTGT-AGA-GATGAGT-GCC
131 TGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCA-ATGAGGA-TAGCC
* * * **
64284321 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGACAGCTAGTATTAGATGTGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGACAGCCAGTATAAGACATGTCTGG
* * * * *
64284386 GACATGCATCAACTA-A-GA-GTTGTGCTAGTGTAAGACATGTCCGGGACATGCATCAG-CATGT
65 GACATACATCAACCACATGATG-AGTGCCAGTGTAAGACATGTCCGGGACATGCATCAGCCA--C
*
64284447 ATATATGAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCAATGAGGATAGCC
127 AT-TATGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCAATGAGGATAGCC
*
64284509 AGTGTAAGACCATGTCTTGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
64284541 TAACTTATCC
Statistics
Matches: 183, Mismatches: 27, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
184 3 0.02
185 32 0.17
186 36 0.20
187 75 0.41
188 17 0.09
189 13 0.07
190 7 0.04
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (187 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGACAGCCAGTATAAGACATGTCTGGG
ACATACATCAACCACATGATGAGTGCCAGTGTAAGACATGTCCGGGACATGCATCAGCCACATTA
TGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCAATGAGGATAGCC
Found at i:64285412 original size:55 final size:54
Alignment explanation
Indices: 64285301--64285435 Score: 166
Period size: 55 Copynumber: 2.5 Consensus size: 54
64285291 GCACTTAAAA
* * *
64285301 TTTTAAAGTTAGTATTGTACA-GGTGAGGCCACATGGGCTTGTGCCATAGCTGTG
1 TTTTAAAGTCAGTATTGTACACGG-GAGGCCACACGGGCTTGTGCCATAGCTATG
* *
64285355 TTTTAAAGTCAATATTGTACACGGGCAGGCCACACGGG-TGTGTGCCATGGCTATG
1 TTTTAAAGTCAGTATTGTACACGGG-AGGCCACACGGGCT-TGTGCCATAGCTATG
* *
64285410 TTTTAAAGTCAGTGTTGCACACGGGA
1 TTTTAAAGTCAGTATTGTACACGGGA
64285436 TAAAGGCACG
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
54 22 0.31
55 48 0.69
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (54 bp):
TTTTAAAGTCAGTATTGTACACGGGAGGCCACACGGGCTTGTGCCATAGCTATG
Found at i:64291265 original size:47 final size:49
Alignment explanation
Indices: 64291214--64291333 Score: 122
Period size: 47 Copynumber: 2.5 Consensus size: 49
64291204 GAATTGACGG
*
64291214 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGACA-T-TGA
1 TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGACACTAAGA
* ** ** * *
64291261 TTAAGGACT-CTATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGA
1 TTAAGGA-TACCATGTAAGACCATGTCAAGACATGGCATCGACACTAAGA
*
64291310 -CAAGGATACCATGTAAGACCATGT
1 TTAAGGATACCATGTAAGACCATGT
64291334 TTGTAACATG
Statistics
Matches: 57, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
47 35 0.61
48 20 0.35
49 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23
Consensus pattern (49 bp):
TTAAGGATACCATGTAAGACCATGTCAAGACATGGCATCGACACTAAGA
Found at i:64291363 original size:47 final size:47
Alignment explanation
Indices: 64291305--64291468 Score: 271
Period size: 47 Copynumber: 3.6 Consensus size: 47
64291295 GCATTGGCAC
* *
64291305 TAAGACAAGGATACCATGTAAGACCATGTTTGTAACATGGAATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
64291352 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
64291399 TAAGACAAGGATACCATG---GACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
64291443 TAAGATAAGGATATCATGTAAGACCA
1 TAAGACAAGGATACCATGTAAGACCA
64291469 AGCCAAGGCA
Statistics
Matches: 110, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
44 42 0.38
47 68 0.62
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:64291415 original size:37 final size:39
Alignment explanation
Indices: 64291373--64291453 Score: 108
Period size: 44 Copynumber: 1.9 Consensus size: 39
64291363 TACCATGTAA
64291373 GACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCAT
1 GACCATGTTTGGAACATGGCATTTGGTAAGACAAGG--A--AT
*
64291416 GGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGA
1 -GACCATGTTTGGAACATGGCATTTGGTAAGACAAGGA
64291454 TATCATGTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
42 1 0.03
44 35 0.97
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (39 bp):
GACCATGTTTGGAACATGGCATTTGGTAAGACAAGGAAT
Found at i:64291573 original size:55 final size:53
Alignment explanation
Indices: 64291449--64291643 Score: 187
Period size: 54 Copynumber: 3.6 Consensus size: 53
64291439 TTGGTAAGAT
* * * * * *
64291449 AAGGATATCATGTAAGACCAAGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTC-ATAAGGA
* * * *
64291503 AAGTAAATCATGTAAGAACATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAGG-A
* * * * *
64291559 AAGG-T-CCTATGTAAGACCATGCCATGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACC-ATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGA
*
64291611 AAGGATACCACGTAAGACCATGTCAAGACATGG
1 AAGGATACCATGTAAGACCATGTCAAGACATGG
64291644 AAATGGCAAG
Statistics
Matches: 115, Mismatches: 21, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
52 4 0.03
53 27 0.23
54 42 0.37
55 39 0.34
56 3 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAGGA
Found at i:64292922 original size:40 final size:40
Alignment explanation
Indices: 64292827--64293044 Score: 277
Period size: 40 Copynumber: 5.5 Consensus size: 40
64292817 TGGATGATAA
* *
64292827 CCGGGCTAAGTCCCAAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
64292868 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
64292908 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
64292948 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
64292988 CCGGGCTATA-TCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTA-AGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
64293027 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
64293045 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
37 1 0.01
38 15 0.09
39 15 0.09
40 103 0.64
41 24 0.15
42 4 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:64296187 original size:79 final size:80
Alignment explanation
Indices: 64296093--64296300 Score: 264
Period size: 79 Copynumber: 2.6 Consensus size: 80
64296083 CTTTGGGACA
* *
64296093 TAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT-GACCCGGATTTAGTAACTCGCAC
1 TAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAG-CCCGGATTTAGTAACTCGCAC
*
64296157 CAATGCCTTCGG-GCT
65 AAATGCCTTCGGAGCT
* * *
64296172 TAGCCCGGA-ATTAGTAACTTGCACAAATTCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 TAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
*
64296235 CAAATGCCTTCGGATCT
64 CAAATGCCTTCGGAGCT
* *
64296252 TAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TAGCCCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
64296301 CATCATTCGA
Statistics
Matches: 111, Mismatches: 11, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
78 4 0.04
79 63 0.57
80 32 0.29
81 12 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
TAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACA
AATGCCTTCGGAGCT
Found at i:64296300 original size:40 final size:40
Alignment explanation
Indices: 64296057--64296300 Score: 250
Period size: 40 Copynumber: 6.1 Consensus size: 40
64296047 CGGAATTTAA
** * * *
64296057 CCGGATATAGCT-ACTCGTTCAGATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
64296097 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT-GAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG-C
* *
64296137 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
64296176 CCGGA-ATTAGTAACTTGCACAAATTCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
64296216 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
64296256 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
64296296 CCGGA
1 CCGGA
64296301 CATCATTCGA
Statistics
Matches: 174, Mismatches: 21, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.18
40 130 0.75
41 11 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:64303578 original size:77 final size:79
Alignment explanation
Indices: 64303462--64303661 Score: 243
Period size: 77 Copynumber: 2.6 Consensus size: 79
64303452 ACCGGGCTAA
* * *
64303462 GAAGGCATTT-TGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 GAAGGCATTTGTGCG--AGTTACTA-TATCC-GGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT
64303525 ACATCCGGGCTA-GTCC-
62 ACATCCGGGCTATGTCCT
*
64303541 GAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 GAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACAT
64303606 CCGGGCTATGTCCT
66 CCGGGCTATGTCCT
* * *
64303620 GAAGGCA-TTGAGCGAG-TAGCTATATCCGGTTAAAT-CCGAAGG
1 GAAGGCATTTGTGCGAGTTA-CTATATCCGGCTAAGTCCCGAAGG
64303662 TACTTGGCTT
Statistics
Matches: 109, Mismatches: 7, Indels: 12
0.85 0.05 0.09
Matches are distributed among these distances:
77 52 0.48
78 36 0.33
79 17 0.16
80 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACAT
CCGGGCTATGTCCT
Found at i:64303594 original size:39 final size:40
Alignment explanation
Indices: 64303462--64303648 Score: 226
Period size: 39 Copynumber: 4.8 Consensus size: 40
64303452 ACCGGGCTAA
*
64303462 GAAGGCATTT-TGCGCTAGTGACTAGT-TCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCG--AGTTACTA-TATCCGGGCTAAGTCCC
* *
64303503 GAAGGCATTTGTGCGAGTTATTACATCCGGGCT-AGT-CC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
64303541 GAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCC
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
* * *
64303580 GAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCT
1 GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
*
64303620 GAAGGCA-TTGAGCGAG-TAGCTATATCCGG
1 GAAGGCATTTGTGCGAGTTA-CTATATCCGG
64303649 TTAAATCCGA
Statistics
Matches: 130, Mismatches: 10, Indels: 14
0.84 0.06 0.09
Matches are distributed among these distances:
37 4 0.03
38 33 0.25
39 49 0.38
40 30 0.23
41 10 0.08
42 4 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC
Found at i:64309094 original size:41 final size:41
Alignment explanation
Indices: 64309037--64309186 Score: 203
Period size: 41 Copynumber: 3.7 Consensus size: 41
64309027 TCGGGGTTTA
64309037 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
64309078 AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
64309119 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
64309159 AATCCGAGCTTGGACTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
64309187 TGAGTCAGCG
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 60 0.66
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.27
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:64311776 original size:40 final size:40
Alignment explanation
Indices: 64311677--64311815 Score: 156
Period size: 40 Copynumber: 3.5 Consensus size: 40
64311667 GGACTAAGAT
* * *
64311677 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* **
64311716 CCAAAGGCATTTATGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* * *
64311756 CCGAAGGCATTCGTGTGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTC
* *
64311796 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
64311816 CGTTATATCC
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 32 0.39
40 42 0.51
41 9 0.11
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:64319290 original size:41 final size:41
Alignment explanation
Indices: 64319233--64319381 Score: 203
Period size: 41 Copynumber: 3.7 Consensus size: 41
64319223 TCGGGGTTTA
64319233 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
64319274 AATCCGAGCTTGGTCTCGAAGGGC-TTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
64319314 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
64319354 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
64319382 TGAGTCAGCG
Statistics
Matches: 91, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
39 17 0.19
40 31 0.34
41 43 0.47
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:64320585 original size:11 final size:11
Alignment explanation
Indices: 64320569--64320600 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
64320559 CTGACTTTGA
64320569 AAATTAACCAT
1 AAATTAACCAT
64320580 AAATTAACCAT
1 AAATTAACCAT
64320591 AAATTAACCA
1 AAATTAACCA
64320601 GAGATAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (11 bp):
AAATTAACCAT
Found at i:64324613 original size:48 final size:48
Alignment explanation
Indices: 64324527--64324661 Score: 153
Period size: 48 Copynumber: 2.8 Consensus size: 48
64324517 CTCATATTGT
* * * ** ** *
64324527 TGCCATGTCCCAGACATGGCCTTACACGAAATAACATATCGATGCCAA
1 TGCCATATCCCAGACATGGTCTTACATGGGATCTCATATCGATACCAA
* * *
64324575 TGCGATATCCCAGATATGGTCTTACATGGGATCTCATATTGATACCAA
1 TGCCATATCCCAGACATGGTCTTACATGGGATCTCATATCGATACCAA
* *
64324623 TGCCATGTCCCAGACATGGTGTTACATGGGATCTCATAT
1 TGCCATATCCCAGACATGGTCTTACATGGGATCTCATAT
64324662 AACCCAATGT
Statistics
Matches: 72, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 72 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (48 bp):
TGCCATATCCCAGACATGGTCTTACATGGGATCTCATATCGATACCAA
Found at i:64336276 original size:13 final size:13
Alignment explanation
Indices: 64336258--64336284 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
64336248 GGAGTAATCG
64336258 CACACGGGCGTGT
1 CACACGGGCGTGT
64336271 CACACGGGCGTGT
1 CACACGGGCGTGT
64336284 C
1 C
64336285 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:64346142 original size:15 final size:15
Alignment explanation
Indices: 64346106--64346135 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
64346096 TTCTTCTTTC
64346106 TGCTCTTGGCCGAAT
1 TGCTCTTGGCCGAAT
64346121 TGCTCTTGGCCGAAT
1 TGCTCTTGGCCGAAT
64346136 ATCTCTTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.27, T:0.33
Consensus pattern (15 bp):
TGCTCTTGGCCGAAT
Found at i:64347486 original size:34 final size:35
Alignment explanation
Indices: 64347408--64347486 Score: 83
Period size: 34 Copynumber: 2.3 Consensus size: 35
64347398 TTTGTCAGCA
* **
64347408 TACTG-TACTGATATGGGCTAAGGCTGAGACTACG
1 TACTGTTACTGAGATGGGCTAAGGCCCAGACTACG
* * *
64347442 T-TTATCACTGAGATGGGCTAAGGCCCAGACTAC-
1 TACTGTTACTGAGATGGGCTAAGGCCCAGACTACG
64347475 TACTGTTACTGA
1 TACTGTTACTGA
64347487 AAAGGGGGTT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
33 2 0.06
34 32 0.94
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (35 bp):
TACTGTTACTGAGATGGGCTAAGGCCCAGACTACG
Found at i:64359596 original size:52 final size:54
Alignment explanation
Indices: 64359490--64359598 Score: 177
Period size: 52 Copynumber: 2.0 Consensus size: 54
64359480 GTATTCATCC
*
64359490 TCCATTAAAATTTTATGGGTGCAAAAAGAAGGACTGATCCCTCTAATGTCAGAAA
1 TCCATTAAAATTTTATAGGTGC-AAAAGAAGGACTGATCCCTCTAATGTCAGAAA
*
64359545 TCCATTAAAATTTTATAGGTGC-AAA-AAGGACTGATCCCTCTAATGTTAGAAA
1 TCCATTAAAATTTTATAGGTGCAAAAGAAGGACTGATCCCTCTAATGTCAGAAA
64359597 TC
1 TC
64359599 TTCCAAGCTA
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
52 28 0.54
53 3 0.06
55 21 0.40
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (54 bp):
TCCATTAAAATTTTATAGGTGCAAAAGAAGGACTGATCCCTCTAATGTCAGAAA
Found at i:64362463 original size:14 final size:14
Alignment explanation
Indices: 64362444--64362474 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
64362434 ATGATTGTTT
*
64362444 TAATCTAAATTTAC
1 TAATCTAAATTAAC
64362458 TAATCTAAATTAAC
1 TAATCTAAATTAAC
64362472 TAA
1 TAA
64362475 GAACACAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:64364417 original size:93 final size:93
Alignment explanation
Indices: 64364258--64364428 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
64364248 GGATGGTTGA
* * *
64364258 GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTACGGATGCGAACGTCCGAACTCATTGAGT
64364323 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
64364351 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTACGGATGCGAACG-CCTGAGCTCATTGAG
1 GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTACGGATGCGAACGTCC-GAACTCATTGAG
*
64364415 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
64364429 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTACGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:64371599 original size:40 final size:40
Alignment explanation
Indices: 64371529--64371735 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
64371519 CGGGATTTAA
** * *
64371529 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
64371568 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
64371608 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
64371648 CCGGAT-TAGTAACTCGCATAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
64371687 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
64371728 CCGGATAT
1 CCGGATAT
64371736 CATTCGAATA
Statistics
Matches: 136, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
39 46 0.34
40 62 0.46
41 28 0.21
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:64377758 original size:78 final size:78
Alignment explanation
Indices: 64377652--64377832 Score: 265
Period size: 78 Copynumber: 2.3 Consensus size: 78
64377642 AATGTTCGAG
64377652 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGCA
64377716 ATTGTGCGAGTTA
66 ATTGTGCGAGTTA
* * *
64377729 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCGAAGGCC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGCA
* *
64377794 TTTGTGCGGGTTA
66 ATTGTGCGAGTTA
** * *
64377807 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
64377833 GTTTGAACGA
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 16 0.17
78 68 0.73
79 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.24
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGTTA
Found at i:64377800 original size:39 final size:39
Alignment explanation
Indices: 64377651--64377792 Score: 232
Period size: 39 Copynumber: 3.7 Consensus size: 39
64377641 GAATGTTCGA
64377651 GTGATATCCGGGCTAAG-CCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
64377689 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
64377728 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
64377767 GTGATATCCGGGTTAAGTCCGAAGGC
1 GTGATATCCGGGCTAAGCCCGAAGGC
64377793 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 17 0.18
39 78 0.82
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:64385581 original size:39 final size:39
Alignment explanation
Indices: 64385527--64385670 Score: 216
Period size: 39 Copynumber: 3.7 Consensus size: 39
64385517 GAATGTTCGA
64385527 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
64385566 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* **
64385605 ATGATATCCTTGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
64385644 GTGATATCTGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
64385671 CTTTGTGCGG
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 83 0.90
40 9 0.10
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:64385621 original size:78 final size:79
Alignment explanation
Indices: 64385528--64385710 Score: 251
Period size: 78 Copynumber: 2.3 Consensus size: 79
64385518 AATGTTCGAG
64385528 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
64385592 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
** * *
64385606 TGATATCCTTGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCTGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
64385671 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
64385685 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
64385711 GTTTGAACGA
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
78 51 0.57
79 30 0.33
80 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:64401422 original size:45 final size:45
Alignment explanation
Indices: 64401358--64401526 Score: 261
Period size: 45 Copynumber: 3.8 Consensus size: 45
64401348 TGTACAGTAC
64401358 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* *
64401403 TATTCGGGCCTTTGAGCCTAGCAGGCAATAATGCCAGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
64401448 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
** * * *
64401493 TATTAAGGCC-TCGAGCGTAGCAGGCGA-AATGCCG
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCG
64401527 ATGAATGAAT
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
43 7 0.06
44 14 0.12
45 94 0.82
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:64407136 original size:26 final size:27
Alignment explanation
Indices: 64407107--64407166 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
64407097 CCACATATAT
*
64407107 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
64407133 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
64407160 ATATCTG
1 ATATCTG
64407167 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:64413512 original size:27 final size:26
Alignment explanation
Indices: 64413468--64413519 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
64413458 CTCACTGCAA
*
64413468 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
64413495 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
64413520 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:64413624 original size:27 final size:26
Alignment explanation
Indices: 64413572--64413631 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
64413562 ATATATATAT
*
64413572 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
64413598 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
64413625 ATATCTG
1 ATATCTG
64413632 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:64416993 original size:40 final size:40
Alignment explanation
Indices: 64416888--64416994 Score: 146
Period size: 40 Copynumber: 2.7 Consensus size: 40
64416878 GTCCCCCTAT
**
64416888 ATCCGGACTAAGAT-CCGAAGGCATTCATGCGAGTTACTAA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
64416928 ATCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
64416969 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGACTAAGTCCCGAAGGCATTTG
64416995 AACGAGTAGC
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
39 1 0.02
40 58 0.95
41 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (40 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:64424954 original size:40 final size:40
Alignment explanation
Indices: 64424897--64425042 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
64424887 TCGAATGATG
* *
64424897 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-AAGTGACTAAA
** *
64424937 TCCGGACTAAGAT-CCGAAGGCATTCATGCAAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCAAGTGACTAAA
* *
64424977 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCAAGTGACTA-AA
* *
64425018 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
64425043 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 83 0.90
41 8 0.09
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCAAGTGACTAAA
Found at i:64438791 original size:41 final size:41
Alignment explanation
Indices: 64438746--64438863 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
64438736 TGAAAGATAA
64438746 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64438787 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64438817 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64438858 ATGTAG
1 ATGTAG
64438864 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64438802 original size:71 final size:71
Alignment explanation
Indices: 64438714--64438877 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64438704 GAGATGTATC
64438714 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64438779 AGGACA
66 AGGACA
64438785 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64438850 AGGACA
66 AGGACA
64438856 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64438878 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64446369 original size:41 final size:41
Alignment explanation
Indices: 64446324--64446441 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
64446314 TGAAAGATAA
64446324 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64446365 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64446395 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64446436 ATGTAG
1 ATGTAG
64446442 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64446380 original size:71 final size:71
Alignment explanation
Indices: 64446292--64446455 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64446282 GAGATGTATC
64446292 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64446357 AGGACA
66 AGGACA
64446363 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64446428 AGGACA
66 AGGACA
64446434 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64446456 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64451352 original size:28 final size:28
Alignment explanation
Indices: 64451321--64451402 Score: 70
Period size: 28 Copynumber: 3.1 Consensus size: 28
64451311 CTTCAATCAT
64451321 GTGTGTAGTACTAAGTGCAAGCTACTAC
1 GTGTGTAGTACTAAGTGCAAGCTACTAC
** *
64451349 GTGTGTCAG-A-T--G-GTTAGGT-C-AC
1 GTGTGT-AGTACTAAGTGCAAGCTACTAC
*
64451371 GTGTGTAGTACTAAGTGCAGGCTACTAC
1 GTGTGTAGTACTAAGTGCAAGCTACTAC
64451399 GTGT
1 GTGT
64451403 ACCAGATAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 16
0.63 0.11 0.26
Matches are distributed among these distances:
21 2 0.05
22 9 0.23
23 2 0.05
24 4 0.10
25 2 0.05
26 3 0.08
27 2 0.05
28 13 0.33
29 2 0.05
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (28 bp):
GTGTGTAGTACTAAGTGCAAGCTACTAC
Found at i:64451395 original size:50 final size:49
Alignment explanation
Indices: 64451221--64451446 Score: 254
Period size: 49 Copynumber: 4.6 Consensus size: 49
64451211 GTGAGGTTAT
* * * * *
64451221 GTGTGCAGTACAAAGTGCAGGCTACTATGTGTACCAGATAATTGGACGC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCAC
* * * * ** *
64451270 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCAATCAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCAC
* ** **
64451321 GTGTGTAGTACTAAGTGCAAGCTACTACGTGTGTCAGATGGTTAGGTCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCAC
*
64451371 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCAC
*
64451420 ATGTGTAGTACTAAGTGCAGGCTACTA
1 GTGTGTAGTACTAAGTGCAGGCTACTA
64451447 TGCATACTAG
Statistics
Matches: 145, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
49 67 0.46
50 45 0.31
51 33 0.23
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (49 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCAC
Found at i:64454384 original size:91 final size:94
Alignment explanation
Indices: 64454222--64454393 Score: 255
Period size: 91 Copynumber: 1.9 Consensus size: 94
64454212 GGGATAAGAT
* * * *
64454222 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTACCATCATCAATGCTGATGCCATGTCCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTACCATCATCAATGCCGATGCCATGTCCC
64454287 AAACATGGTCTTACACAACACAACGTTTA
66 AAACATGGTCTTACACAACACAACGTTTA
64454316 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGC-ACTCATC-TCAATGCCGATGCCATGT-C
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTAC-CATCATCAATGCCGATGCCATGTCC
64454376 CAAGACATGGTCTTACAC
65 CAA-ACATGGTCTTACAC
64454394 TGGCTCTCAT
Statistics
Matches: 72, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
90 4 0.06
91 33 0.46
92 15 0.21
93 13 0.18
94 7 0.10
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (94 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTACCATCATCAATGCCGATGCCATGTCCC
AAACATGGTCTTACACAACACAACGTTTA
Found at i:64472700 original size:40 final size:39
Alignment explanation
Indices: 64472622--64472845 Score: 297
Period size: 40 Copynumber: 5.6 Consensus size: 39
64472612 ACCCAAGTAT
* *
64472622 CTTCGGGATTTAG-CCGGATATAGCAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGC-ACTAGCACAAATGC
* **
64472661 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATGC
64472701 CTTCGGGACTTAGCCCGGATATAGGCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATA-GCACTAGCACAAATGC
*
64472741 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGC-ACTA---GCACAAATGC
* *
64472784 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CACTAGCACAAATGC
64472824 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
64472846 CATCCGAATA
Statistics
Matches: 165, Mismatches: 12, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 2 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.24
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATGC
Found at i:64472818 original size:83 final size:80
Alignment explanation
Indices: 64472622--64472845 Score: 319
Period size: 83 Copynumber: 2.8 Consensus size: 80
64472612 ACCCAAGTAT
* *
64472622 CTTCGGGATTTAG-CCGGATATAGCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
64472686 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
64472701 CTTCGGGACTTAGCCCGGATATAGGC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CTTCGGGACTTAGCCCGGATATA-GCAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
64472765 -CAACTACTCGCACAAATGC
65 TC-ACTA---GCACAAATGC
*
64472784 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGCAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
64472846 CATCCGAATA
Statistics
Matches: 129, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
79 13 0.10
80 48 0.37
81 2 0.02
82 1 0.01
83 65 0.50
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:64474706 original size:46 final size:46
Alignment explanation
Indices: 64474639--64474812 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
64474629 AACATTTAGT
* *
64474639 CGATGCATGTCCTAGACATGTCTTACACTAGCTTTCATCTTGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTTGAGGC
* * ** ** *
64474685 CGATGCATGTCCTAGACATGTCTTACACTAACAGTCATCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTTGAGGC
* ** *
64474731 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTTGAGGC
64474779 CGATGCATGTCCCAGACATGTCTT-CAACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTAC-ACTAGCTC
64474813 ACACAAGTGA
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
45 1 0.01
46 57 0.53
47 27 0.25
48 22 0.21
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTTGAGGC
Found at i:64475929 original size:34 final size:34
Alignment explanation
Indices: 64475891--64475957 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
64475881 CACTAATATA
64475891 ATCATACTATAACCTCATAATAATAATAAAAATG
1 ATCATACTATAACCTCATAATAATAATAAAAATG
64475925 ATCATACTATAACCTCATAATAATAATAAAAAT
1 ATCATACTATAACCTCATAATAATAATAAAAAT
64475958 AATTTTCCCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.54, C:0.15, G:0.01, T:0.30
Consensus pattern (34 bp):
ATCATACTATAACCTCATAATAATAATAAAAATG
Found at i:64479468 original size:40 final size:40
Alignment explanation
Indices: 64479419--64479506 Score: 167
Period size: 40 Copynumber: 2.2 Consensus size: 40
64479409 TCTATTTTGG
64479419 TTTTCTTTCTTTTCTCAAAACCGATTGTGCCATTCTATTT
1 TTTTCTTTCTTTTCTCAAAACCGATTGTGCCATTCTATTT
64479459 TTTTCTTTCTTTTCTCAAAACCGATTGTGCCATTCTATTT
1 TTTTCTTTCTTTTCTCAAAACCGATTGTGCCATTCTATTT
64479499 TTTCTCTT
1 TTT-TCTT
64479507 CTTGTTCATA
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 43 0.91
41 4 0.09
ACGTcount: A:0.16, C:0.23, G:0.07, T:0.55
Consensus pattern (40 bp):
TTTTCTTTCTTTTCTCAAAACCGATTGTGCCATTCTATTT
Found at i:64480056 original size:16 final size:17
Alignment explanation
Indices: 64480026--64480057 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
64480016 AATCGATTAA
64480026 AAGTTTTGTGAAGGATC
1 AAGTTTTGTGAAGGATC
64480043 AAGTTTTG-GAAGGAT
1 AAGTTTTGTGAAGGAT
64480058 TCGTGGTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.31, C:0.03, G:0.31, T:0.34
Consensus pattern (17 bp):
AAGTTTTGTGAAGGATC
Found at i:64480931 original size:22 final size:23
Alignment explanation
Indices: 64480906--64480948 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
64480896 AATCCCCATA
*
64480906 TGGAGTGTAG-GGCTGGATGGAG
1 TGGAGTGTAGAGGATGGATGGAG
64480928 TGGAGTGTAGAGGATGGATGG
1 TGGAGTGTAGAGGATGGATGG
64480949 GTAGGATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.02, G:0.53, T:0.23
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGATGGAG
Found at i:64481909 original size:30 final size:30
Alignment explanation
Indices: 64481875--64481932 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
64481865 CCGAGCCTAC
64481875 GGGCAAAAGTGTAAATATGCAAAAGTTTAG
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAG
* * * *
64481905 GGGCAAAATTGTAATTTTTCAAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
64481933 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAG
Found at i:64482741 original size:64 final size:64
Alignment explanation
Indices: 64482660--64482844 Score: 205
Period size: 67 Copynumber: 2.9 Consensus size: 64
64482650 AGACATTATG
* * *
64482660 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
64482724 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
64482789 AA
63 AA
* * *
64482791 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCT
64482845 GAACTATATG
Statistics
Matches: 100, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:64495084 original size:30 final size:29
Alignment explanation
Indices: 64495049--64495122 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
64495039 CTTCGAGCTC
* *
64495049 GCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACCCAGTGCCATA-TATTTCCAGCAT
**
64495079 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
64495108 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
64495123 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 26 0.65
30 14 0.35
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Done.