Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 216 of 335
Found at i:64496315 original size:19 final size:18
Alignment explanation
Indices: 64496282--64496335 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
64496272 AATGAACACT
* *
64496282 TTTTTTTTCTTTTCTTTG
1 TTTTTCTTCATTTCTTTG
*
64496300 TTTTTCTTCATATTCTTTT
1 TTTTTCTTCAT-TTCTTTG
*
64496319 TTTTTTTTCATTTCTTT
1 TTTTTCTTCATTTCTTT
64496336 ATTCTTCCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 15 0.48
19 16 0.52
ACGTcount: A:0.06, C:0.13, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTTCTTCATTTCTTTG
Found at i:64501511 original size:29 final size:29
Alignment explanation
Indices: 64501449--64501551 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
64501439 GTGACAAGAT
* * *
64501449 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
64501478 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
64501507 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
64501536 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64501552 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:64506084 original size:44 final size:43
Alignment explanation
Indices: 64506036--64506194 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
64506026 GGTGTGATAT
64506036 CGTGTAAGACCATGTCTGGGACATTGGCATCGACT-TGAGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGA-TAT-AGATTTA
* *
64506080 CGTGTAAGACCATGTCTGGGTCATCGGCATCG-TATATGATTT-
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATA-GATTTA
* * * *
64506122 CGTGTAATACCCTGTCTGGGACAGTGGCATCGATATTTGA-TTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATA-TAGATTTA
* * **
64506165 CATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACATTGGCAT
64506195 TGCACGAGCT
Statistics
Matches: 95, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 31 0.33
43 33 0.35
44 31 0.33
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGATATAGATTTA
Found at i:64510145 original size:50 final size:49
Alignment explanation
Indices: 64510015--64510201 Score: 178
Period size: 50 Copynumber: 3.8 Consensus size: 49
64510005 AGCCGAAACT
* * *
64510015 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGATCAATA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACAGGCGATCAATA
* * * * *
64510064 ATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGGGGCCTC-ATC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACA-GGCG-ATCAATA
* * * * *
64510114 ATCTGATACACGTAGTAGCCTGCAATTAGTACTACACATGTGACTTAACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACAGGCGA-TCAATA
* * * * *
64510164 ATATGATACATGTAGTAGCCTACAGTTACTACTACACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
64510202 CGTGTATTCA
Statistics
Matches: 112, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
49 37 0.33
50 73 0.65
51 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (49 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACAGGCGATCAATA
Found at i:64514272 original size:39 final size:39
Alignment explanation
Indices: 64514229--64514365 Score: 179
Period size: 39 Copynumber: 3.5 Consensus size: 39
64514219 GGATATAACG
*
64514229 ACTCGCTCAAATGCCTTCGGGAC-AAACCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGTT-TAGTA
* *
64514268 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGGTTTAGTA
* *
64514307 ACTCGCACAAATGCCTTCGGG-CTTAACCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTAAACCCGG-TTTAGTA
* *
64514346 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
64514366 ATCTTAGTCC
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
38 10 0.11
39 70 0.79
40 9 0.10
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTAAACCCGGTTTAGTA
Found at i:64522170 original size:39 final size:39
Alignment explanation
Indices: 64522077--64522265 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
64522067 CGAATGATGT
* * *
64522077 CCGGGCTAAGTCCCGAAGGC-TT-GTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AA
* * *
64522116 CC-GACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
64522154 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
64522193 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
64522234 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
64522266 CGTTATATCC
Statistics
Matches: 121, Mismatches: 21, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
38 14 0.12
39 46 0.38
40 59 0.49
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:64530251 original size:79 final size:82
Alignment explanation
Indices: 64530111--64530295 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
64530101 TCGAATGATG
* * *
64530111 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
64530175 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
64530191 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
64530253 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
64530271 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64530296 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:64530303 original size:40 final size:40
Alignment explanation
Indices: 64530112--64530303 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
64530102 CGAATGATGT
* * * * *
64530112 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
64530152 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
64530192 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
64530231 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
64530271 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
64530304 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:64530326 original size:79 final size:79
Alignment explanation
Indices: 64530111--64530328 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
64530101 TCGAATGATG
* * * * ** *
64530111 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
64530174 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
64530191 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
64530256 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
64530271 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
64530329 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:64533958 original size:29 final size:29
Alignment explanation
Indices: 64533916--64534027 Score: 129
Period size: 29 Copynumber: 3.9 Consensus size: 29
64533906 ATACTATGAT
64533916 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCATATGAATGTGAA
* * *
64533945 TTGGGCCTAGTGGGCCATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATGTGAA
* * *
64533974 CTGGGCC-AGATGGGCCATACGAATGAG-A
1 TTGGGCCTA-ATGGGCCATATGAATGTGAA
* *
64534002 TTGGGCCTAATAGGCCATATGCATGT
1 TTGGGCCTAATGGGCCATATGAATGT
64534028 ATGTAAGGGT
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
28 21 0.31
29 47 0.69
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATGTGAA
Found at i:64534813 original size:14 final size:15
Alignment explanation
Indices: 64534794--64534823 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
64534784 TTTGACTTTT
64534794 TTTTATCTTA-TAAG
1 TTTTATCTTATTAAG
64534808 TTTTATCTTATTAAG
1 TTTTATCTTATTAAG
64534823 T
1 T
64534824 ATGTTTCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.60
Consensus pattern (15 bp):
TTTTATCTTATTAAG
Found at i:64536905 original size:16 final size:16
Alignment explanation
Indices: 64536884--64536916 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
64536874 AGGGGACGCC
64536884 CCAAAAATCTTGAAAT
1 CCAAAAATCTTGAAAT
64536900 CCAAAAATCTTGAAAT
1 CCAAAAATCTTGAAAT
64536916 C
1 C
64536917 TTGAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.21, G:0.06, T:0.24
Consensus pattern (16 bp):
CCAAAAATCTTGAAAT
Found at i:64538462 original size:29 final size:29
Alignment explanation
Indices: 64538420--64538521 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
64538410 TTGCGCCTAA
*
64538420 TGGGCCATATGAATGTGAATTGGGCCTAG
1 TGGGCCATATGAATGTGAATTGGGCCCAG
* * * * *
64538449 TGGGCTATAAGAATATAAACT-GGCCCAG
1 TGGGCCATATGAATGTGAATTGGGCCCAG
*
64538477 ATGGGCCATATGAATGAG-ATTGGGCCCAG
1 -TGGGCCATATGAATGTGAATTGGGCCCAG
*
64538506 TGGGCCATATGCATGT
1 TGGGCCATATGAATGT
64538522 ATGTAGGGTA
Statistics
Matches: 57, Mismatches: 14, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
28 22 0.39
29 35 0.61
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGGCCATATGAATGTGAATTGGGCCCAG
Found at i:64540396 original size:370 final size:370
Alignment explanation
Indices: 64539715--64540455 Score: 1437
Period size: 370 Copynumber: 2.0 Consensus size: 370
64539705 ACTACTGTGG
64539715 ACCTTCTATTGGGTCAGAAAATACACTTAGACCTCATACTGATGAAATGTCTATTATACCCATAT
1 ACCTTCTATTGGGTCAGAAAATACACTTAGACCTCATACTGATGAAATGTCTATTATACCCATAT
64539780 GAGGTAAAATGACTTATATACCCCTATGTTATGTATAACTGTATTTGAGCATAACATTTCTGCAT
66 GAGGTAAAATGACTTATATACCCCTATGTTATGTATAACTGTATTTGAGCATAACATTTCTGCAT
*
64539845 ACACGTATGATATTATGACATGACATGTTGCATGGGGGTGGGTTTGATATATTTTGAGGAAGTGT
131 ACACATATGATATTATGACATGACATGTTGCATGGGGGTGGGTTTGATATATTTTGAGGAAGTGT
64539910 ATTGTACTAGCAGCTCTGCTCATATACTGTTTAGTGCCGTAACCGGTGCTATATTTTGGAATGTA
196 ATTGTACTAGCAGCTCTGCTCATATACTGTTTAGTGCCGTAACCGGTGCTATATTTTGGAATGTA
64539975 GGGATGGGTAGGTCGATTTTATCCCTACATAGAGTGTAGGGCTGGACAAAGTGGAGTGTAAAGGA
261 GGGATGGGTAGGTCGATTTTATCCCTACATAGAGTGTAGGGCTGGACAAAGTGGAGTGTAAAGGA
*
64540040 TGAATGGGTAGGATTTTTTATTGCATTTCTGTTACTGTCACTATA
326 TGAATGGGCAGGATTTTTTATTGCATTTCTGTTACTGTCACTATA
*
64540085 ACCTTCTATTGGGTCAGAAAATACACTTAGACCTCATATTGATGAAATGTCTATTATACCCATAT
1 ACCTTCTATTGGGTCAGAAAATACACTTAGACCTCATACTGATGAAATGTCTATTATACCCATAT
64540150 GAGGTAAAATGACTTATATACCCCTATGTTATGTATAACTGTATTTGAGCATAACATTTCTGCAT
66 GAGGTAAAATGACTTATATACCCCTATGTTATGTATAACTGTATTTGAGCATAACATTTCTGCAT
64540215 ACACATATGATATTATGACATGACATGTTGCATGGGGGTGGGTTTGATATATTTTGAGGAAGTGT
131 ACACATATGATATTATGACATGACATGTTGCATGGGGGTGGGTTTGATATATTTTGAGGAAGTGT
*
64540280 ATTGTACTAGCAGCTCTGCTCATATACTGTTTAGTGCCGTAACCGGTGCTATATTTTGGAGTGTA
196 ATTGTACTAGCAGCTCTGCTCATATACTGTTTAGTGCCGTAACCGGTGCTATATTTTGGAATGTA
*
64540345 GGGATGGGTAGGTCGATTTTATCCCTACATGGAGTGTAGGGCTGGACAAAGTGGAGTGTAAAGGA
261 GGGATGGGTAGGTCGATTTTATCCCTACATAGAGTGTAGGGCTGGACAAAGTGGAGTGTAAAGGA
64540410 TGAATGGGCAGGATTTTTTATTGCATTTCTGTTACTGTCACTATA
326 TGAATGGGCAGGATTTTTTATTGCATTTCTGTTACTGTCACTATA
64540455 A
1 A
64540456 TGGGCTAAGG
Statistics
Matches: 366, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
370 366 1.00
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (370 bp):
ACCTTCTATTGGGTCAGAAAATACACTTAGACCTCATACTGATGAAATGTCTATTATACCCATAT
GAGGTAAAATGACTTATATACCCCTATGTTATGTATAACTGTATTTGAGCATAACATTTCTGCAT
ACACATATGATATTATGACATGACATGTTGCATGGGGGTGGGTTTGATATATTTTGAGGAAGTGT
ATTGTACTAGCAGCTCTGCTCATATACTGTTTAGTGCCGTAACCGGTGCTATATTTTGGAATGTA
GGGATGGGTAGGTCGATTTTATCCCTACATAGAGTGTAGGGCTGGACAAAGTGGAGTGTAAAGGA
TGAATGGGCAGGATTTTTTATTGCATTTCTGTTACTGTCACTATA
Found at i:64540514 original size:34 final size:34
Alignment explanation
Indices: 64540438--64540514 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
64540428 TATTGCATTT
64540438 CTGTTACTGTCACTATAATGGGCTAAGGCCCACA
1 CTGTTACTGTCACTATAATGGGCTAAGGCCCACA
* * *
64540472 CTGCTACTGAT-ACTGTATTGGGCTAAGGCCCTA-A
1 CTGTTACTG-TCACTATAATGGGCTAAGGCCC-ACA
64540506 CTGTTACTG
1 CTGTTACTG
64540515 GACTGTTACT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
34 35 0.95
35 2 0.05
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (34 bp):
CTGTTACTGTCACTATAATGGGCTAAGGCCCACA
Found at i:64543620 original size:257 final size:257
Alignment explanation
Indices: 64543164--64543677 Score: 1003
Period size: 257 Copynumber: 2.0 Consensus size: 257
64543154 ATTTTGTGTG
64543164 TTTGCATTGTTTATAGATATTGAAGCTGCTGTGAGCTTGGGTTGTTGAGGATCATCACCCCACTA
1 TTTGCATTGTTTATAGATATTGAAGCTGCTGTGAGCTTGGGTTGTTGAGGATCATCACCCCACTA
64543229 TCGAATCTCATTTTGGTACCATTTGAAATTGTATATAGTAAAGTATGGCATGTATAGGCTAGAAG
66 TCGAATCTCATTTTGGTACCATTTGAAATTGTATATAGTAAAGTATGGCATGTATAGGCTAGAAG
64543294 TAATTTGGATAGGTTTTGTAATGTTTATATTTAGCCATATGATATGGCTTGATATATGGTTGTGT
131 TAATTTGGATAGGTTTTGTAATGTTTATATTTAGCCATATGATATGGCTTGATATATGGTTGTGT
64543359 TTATGTTTTTGATTTTGGTATATGAAATGTGATGCAAGATGATCTATTTGATGTGTTCATGA
196 TTATGTTTTTGATTTTGGTATATGAAATGTGATGCAAGATGATCTATTTGATGTGTTCATGA
64543421 TTTGCATTGTTTTATAGATATTGAAGCTGCTGTGAGCTTGGGTTGTTGAGGATCATCACCCCACT
1 TTTGCATTG-TTTATAGATATTGAAGCTGCTGTGAGCTTGGGTTGTTGAGGATCATCACCCCACT
64543486 ATCGAATCTCATTTTGGTACCATTTGAAATTGTATATAGTAAAGTATGGCATGTATAGGCTA-AA
65 ATCGAATCTCATTTTGGTACCATTTGAAATTGTATATAGTAAAGTATGGCATGTATAGGCTAGAA
64543550 GTAATTTGGATAGGTTTTGTAATGTTTATATTTAGCCATATGATATGGCTTGATATATGGTTGTG
130 GTAATTTGGATAGGTTTTGTAATGTTTATATTTAGCCATATGATATGGCTTGATATATGGTTGTG
*
64543615 TTTATGTTTTTTATTTTGGTATATGAAATGTGATGCAAGATGATCTATTTGATGTGTTCATGA
195 TTTATGTTTTTGATTTTGGTATATGAAATGTGATGCAAGATGATCTATTTGATGTGTTCATGA
64543678 ATGGCTAAGA
Statistics
Matches: 255, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
257 138 0.54
258 117 0.46
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.42
Consensus pattern (257 bp):
TTTGCATTGTTTATAGATATTGAAGCTGCTGTGAGCTTGGGTTGTTGAGGATCATCACCCCACTA
TCGAATCTCATTTTGGTACCATTTGAAATTGTATATAGTAAAGTATGGCATGTATAGGCTAGAAG
TAATTTGGATAGGTTTTGTAATGTTTATATTTAGCCATATGATATGGCTTGATATATGGTTGTGT
TTATGTTTTTGATTTTGGTATATGAAATGTGATGCAAGATGATCTATTTGATGTGTTCATGA
Found at i:64553720 original size:46 final size:46
Alignment explanation
Indices: 64553670--64553842 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
64553660 TGGTTGAGCA
*
64553670 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
64553716 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
64553763 TCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
64553809 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
64553843 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:64553826 original size:93 final size:93
Alignment explanation
Indices: 64553667--64553837 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
64553657 GGATGGTTGA
* *
64553667 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
64553732 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
64553760 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
64553825 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
64553838 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64574860 original size:40 final size:40
Alignment explanation
Indices: 64574790--64574953 Score: 212
Period size: 40 Copynumber: 4.2 Consensus size: 40
64574780 TGGATGATAA
* *
64574790 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
64574830 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
64574870 CGAAGGCATTTGTGCGAGTTACTATGA-CCGGGCT-AGTCC
1 CGAAGGCATTTGTGCGAGTTACTAT-ATCCGGGCTAAGTCC
* * * *
64574909 CGAAGACATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
64574948 CGAAGG
1 CGAAGG
64574954 TACTTGGTTT
Statistics
Matches: 112, Mismatches: 7, Indels: 11
0.86 0.05 0.08
Matches are distributed among these distances:
38 6 0.05
39 36 0.32
40 68 0.61
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:64574934 original size:79 final size:79
Alignment explanation
Indices: 64574790--64574953 Score: 217
Period size: 79 Copynumber: 2.1 Consensus size: 79
64574780 TGGATGATAA
* * * *
64574790 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 CGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGACATTTGAGCGAGTTACTAT
*
64574855 ATCCGGGCTAAGTCC
66 ATCC-GGCTAAATCC
*
64574870 CGAAGGCATTTGTGCGAGTTACT-ATGACCGGGCT-AGTCCCGAAGACATTTGAGCGAG-TAGCT
1 CGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGACATTTGAGCGAGTTA-CT
*
64574932 ATATCCGGTTAAATCC
64 ATATCCGGCTAAATCC
64574948 CGAAGG
1 CGAAGG
64574954 TACTTGGTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
78 16 0.21
79 31 0.41
80 28 0.37
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGACATTTGAGCGAGTTACTAT
ATCCGGCTAAATCC
Found at i:64581462 original size:20 final size:21
Alignment explanation
Indices: 64581426--64581474 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
64581416 ACTTCTCTAA
*
64581426 TCACATAGTTCATATTC-ATT
1 TCACATATTTCATATTCAATT
64581446 TCACATATTCTCA-ATTCAATT
1 TCACATATT-TCATATTCAATT
*
64581467 ACACATAT
1 TCACATAT
64581475 AGCATTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.35, C:0.22, G:0.02, T:0.41
Consensus pattern (21 bp):
TCACATATTTCATATTCAATT
Found at i:64581776 original size:17 final size:17
Alignment explanation
Indices: 64581754--64581789 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
64581744 ATAAATTAGT
64581754 TATATTTA-GTTGATGAA
1 TATATTTAGGTT-ATGAA
64581771 TATATTTAGGTTATGAA
1 TATATTTAGGTTATGAA
64581788 TA
1 TA
64581790 GATAATGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.83
18 3 0.17
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (17 bp):
TATATTTAGGTTATGAA
Found at i:64582396 original size:42 final size:42
Alignment explanation
Indices: 64582349--64582433 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
64582339 ATGTGCATGG
64582349 TTTTGTGATTAGGAAAGAAGTATGTTTAGTTTTAAATTATGA
1 TTTTGTGATTAGGAAAGAAGTATGTTTAGTTTTAAATTATGA
64582391 TTTTGTGATTAGGAAAGAAGTATGTTTAGTTTTAAATTATGA
1 TTTTGTGATTAGGAAAGAAGTATGTTTAGTTTTAAATTATGA
64582433 T
1 T
64582434 AGTTTAAATG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (42 bp):
TTTTGTGATTAGGAAAGAAGTATGTTTAGTTTTAAATTATGA
Found at i:64588671 original size:39 final size:39
Alignment explanation
Indices: 64588617--64588760 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
64588607 GAATGTTCGA
*
64588617 GTGATATCCGGGCTAAGCTCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
64588656 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCTAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
64588695 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
64588734 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
64588761 CTTTGTGCGG
Statistics
Matches: 96, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:64596547 original size:39 final size:39
Alignment explanation
Indices: 64596493--64596636 Score: 216
Period size: 39 Copynumber: 3.7 Consensus size: 39
64596483 GAATGTTCGA
64596493 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
64596532 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* **
64596571 ATGATATCCTTGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
64596610 GTGATATCTGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
64596637 CTTTGTGCGG
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 83 0.90
40 9 0.10
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:64596587 original size:78 final size:79
Alignment explanation
Indices: 64596494--64596676 Score: 251
Period size: 78 Copynumber: 2.3 Consensus size: 79
64596484 AATGTTCGAG
64596494 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
64596558 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
** * *
64596572 TGATATCCTTGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCTGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
64596637 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
64596651 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
64596677 GTTTGAACGA
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
78 51 0.57
79 30 0.33
80 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:64601180 original size:80 final size:80
Alignment explanation
Indices: 64601077--64601261 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
64601067 TAACCACTCG
*
64601077 CAAAGGCCTTCGGGTCTTAGCCCGG--TTATGATCACTAGCATAAAATGCCTTCGGGA-CTTAG-
1 CAAA-GCCTTCGGGTCTTAGCCCGGATTTA-G-TAACTAGCAT-AAATGCCTTC-GGATCTTAGT
* *
64601138 CCGGATATAGTCGC-TAGCA
61 CCGGATATAGTCACTTAACA
* * *
64601157 CAAATGCCTTCGGGTTTTGGCCCGGATTTAGTAACTCGCATAAATGCCTTCGGATCTTAGTCCGG
1 CAAA-GCCTTCGGGTCTTAGCCCGGATTTAGTAACTAGCATAAATGCCTTCGGATCTTAGTCCGG
64601222 ATATAGTCACTTAACA
65 ATATAGTCACTTAACA
*
64601238 CAAAGCCTT--GGACTTAGCCCGGAT
1 CAAAGCCTTCGGGTCTTAGCCCGGAT
64601262 ATCATTCGTA
Statistics
Matches: 90, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
78 15 0.17
79 15 0.17
80 48 0.53
81 9 0.10
82 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (80 bp):
CAAAGCCTTCGGGTCTTAGCCCGGATTTAGTAACTAGCATAAATGCCTTCGGATCTTAGTCCGGA
TATAGTCACTTAACA
Found at i:64601182 original size:40 final size:40
Alignment explanation
Indices: 64601077--64601263 Score: 177
Period size: 40 Copynumber: 4.7 Consensus size: 40
64601067 TAACCACTCG
* *
64601077 CAAAGGCCTTCGGGTCTTAGCCCGGTTAT-GATCACTAGCA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAG-TCACTAGCA
* * *
64601117 TAAAATGCCTTCGGGACTTAG-CCGGATATAGTCGCTAGCA
1 -CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA
* * * * *
64601157 CAAATGCCTTCGGGTTTTGGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA
* * * *
64601197 TAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAACA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCA
*
64601238 CAAA-GCCTT--GGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGTCTTAGCCCGGATAT
64601264 CATTCGTAAT
Statistics
Matches: 117, Mismatches: 26, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
38 14 0.12
39 16 0.14
40 63 0.54
41 24 0.21
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA
Found at i:64609249 original size:40 final size:40
Alignment explanation
Indices: 64609202--64609386 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
64609192 CTCGTACAAG
64609202 GCCTTCGGGTCTTAGCCCGGATAT-GATCACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAG-TCACTAGCACAAAT
*
64609242 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * * *
64609282 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
64609322 GCCTTCGGATCTTAGTCCGGATATAGTCACTTAACACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAAT
* *
64609363 GCCTTCAGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
64609387 CATTCGAATA
Statistics
Matches: 123, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
40 96 0.78
41 27 0.22
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:64613373 original size:17 final size:18
Alignment explanation
Indices: 64613326--64613373 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
64613316 GACATTTATT
*
64613326 CAATTATATAAT-TAAAA
1 CAATAATATAATATAAAA
* *
64613343 CAATAATCTTATATAAAA
1 CAATAATATAATATAAAA
64613361 -AATAATATAATAT
1 CAATAATATAATAT
64613374 TTAATAAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
17 20 0.80
18 5 0.20
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (18 bp):
CAATAATATAATATAAAA
Found at i:64615519 original size:16 final size:16
Alignment explanation
Indices: 64615498--64615539 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
64615488 CGATTTTGAG
64615498 AAAAAGAAAGGAGGGA
1 AAAAAGAAAGGAGGGA
64615514 AAAAAGAAAGGAGGGA
1 AAAAAGAAAGGAGGGA
64615530 AAAAAGAAAG
1 AAAAAGAAAG
64615540 ATTTCATATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAGGAGGGA
Found at i:64616290 original size:7 final size:7
Alignment explanation
Indices: 64616245--64616275 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
64616235 AAAAAATCAC
*
64616245 AAACTCT
1 AAACCCT
64616252 AAACCCT
1 AAACCCT
64616259 AAACCCT
1 AAACCCT
64616266 AAACCCT
1 AAACCCT
64616273 AAA
1 AAA
64616276 TCAAAAACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.48, C:0.35, G:0.00, T:0.16
Consensus pattern (7 bp):
AAACCCT
Found at i:64616374 original size:28 final size:29
Alignment explanation
Indices: 64616314--64616377 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
64616304 TATTATATCA
* *
64616314 TAAACCCTAAACTCTTAAACCATAGACAT
1 TAAACCCTAAACTCTTAAACCATAAACAC
* * *
64616343 TAAACCTTAAA-TCTTAAATCATAAACCC
1 TAAACCCTAAACTCTTAAACCATAAACAC
64616371 TAAACCC
1 TAAACCC
64616378 CAAAATAATA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
28 19 0.66
29 10 0.34
ACGTcount: A:0.45, C:0.28, G:0.02, T:0.25
Consensus pattern (29 bp):
TAAACCCTAAACTCTTAAACCATAAACAC
Found at i:64616995 original size:21 final size:21
Alignment explanation
Indices: 64616911--64617004 Score: 66
Period size: 21 Copynumber: 4.4 Consensus size: 21
64616901 CATTATATTT
64616911 ACCCTCAAACACTAAACCATAA
1 ACCCT-AAACACTAAACCATAA
* * *
64616933 ACCATAAATC-CTAGACTATAA
1 ACCCTAAA-CACTAAACCATAA
* * **
64616954 ACCCAAAACCCTAAATTATAA
1 ACCCTAAACACTAAACCATAA
* *
64616975 GCCCTAAATACTAAACCAT-A
1 ACCCTAAACACTAAACCATAA
64616995 ACCCATAAAC
1 ACCC-TAAAC
64617005 TAAATTGATT
Statistics
Matches: 54, Mismatches: 15, Indels: 7
0.71 0.20 0.09
Matches are distributed among these distances:
20 5 0.09
21 44 0.81
22 5 0.09
ACGTcount: A:0.49, C:0.31, G:0.02, T:0.18
Consensus pattern (21 bp):
ACCCTAAACACTAAACCATAA
Found at i:64617323 original size:40 final size:40
Alignment explanation
Indices: 64617279--64617443 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
64617269 TTTACGGCAT
* * * * *
64617279 TTTTTCAGAAAGCGACGCTAATGGTTGACCTATAGCGGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCG
* * *
64617319 TTTTTCAAAAAGTGCCGCTAATGCTCAATCTATAGCAGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCG
* * *
64617359 TTTTTCAAAAAGCGCCGTTGATGCTCGATCTATAGCAGCG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCG
* *
64617399 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCGGCA
1 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCG
64617439 TTTTT
1 TTTTT
64617444 GGTCCTAGCG
Statistics
Matches: 108, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (40 bp):
TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCG
Found at i:64617368 original size:141 final size:140
Alignment explanation
Indices: 64617114--64617371 Score: 369
Period size: 141 Copynumber: 1.8 Consensus size: 140
64617104 AAGCTGACGT
* **
64617114 CATTGTTCTTAATTTTTTTGTGGCATTTTTCAGAAAGCATCACTAATGGTCGACCTATGGTGCGT
1 CATTGTGCTTAATTTTTTTACGGCATTTTTCAGAAAGCATCACTAATGGTCGACCTATGGTGCGT
* * *
64617179 TTTTCAGAAAGCGCTGCTAATGCTCGATATATAGCAGCGTTTTTCAAAAAGCACCGCTAATGCCA
66 TTTTCAAAAAGCGCCGCTAATGCTCAATATATAGCAGCGTTTTTCAAAAAGCACCGCTAATGCCA
64617244 CTAAAGCTCA
131 CTAAAGCTCA
* *
64617254 CATTGTGCTTAA-TTTTTTACGGCATTTTTTCAGAAAGCGA-CGCTAATGGTTGACCTATAGCG-
1 CATTGTGCTTAATTTTTTTACGGCA-TTTTTCAGAAAGC-ATCACTAATGGTCGACCTAT-G-GT
* *
64617316 GCGTTTTTCAAAAAGTGCCGCTAATGCTCAATCTATAGCAGCGTTTTTCAAAAAGC
62 GCGTTTTTCAAAAAGCGCCGCTAATGCTCAATATATAGCAGCGTTTTTCAAAAAGC
64617372 GCCGTTGATG
Statistics
Matches: 104, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
139 10 0.10
140 40 0.38
141 53 0.51
142 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (140 bp):
CATTGTGCTTAATTTTTTTACGGCATTTTTCAGAAAGCATCACTAATGGTCGACCTATGGTGCGT
TTTTCAAAAAGCGCCGCTAATGCTCAATATATAGCAGCGTTTTTCAAAAAGCACCGCTAATGCCA
CTAAAGCTCA
Found at i:64617945 original size:22 final size:24
Alignment explanation
Indices: 64617905--64617953 Score: 84
Period size: 22 Copynumber: 2.1 Consensus size: 24
64617895 AGATAGTAGT
64617905 ATGCGAACCTCATATATATGTTAC
1 ATGCGAACCTCATATATATGTTAC
64617929 ATGCGAACC-C-TATATATGTTAC
1 ATGCGAACCTCATATATATGTTAC
64617951 ATG
1 ATG
64617954 TAAAACTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 15 0.60
23 1 0.04
24 9 0.36
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (24 bp):
ATGCGAACCTCATATATATGTTAC
Found at i:64617969 original size:23 final size:22
Alignment explanation
Indices: 64617917--64617969 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
64617907 GCGAACCTCA
**
64617917 TATATATGTTACATGCGAACCC
1 TATATATGTTACATGAAAACCC
**
64617939 TATATATGTTACATGTAAAACTG
1 TATATATGTTACATG-AAAACCC
64617962 TATATATG
1 TATATATG
64617970 CGAACCTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (22 bp):
TATATATGTTACATGAAAACCC
Found at i:64620233 original size:64 final size:64
Alignment explanation
Indices: 64620158--64620301 Score: 252
Period size: 64 Copynumber: 2.2 Consensus size: 64
64620148 AATGACCAAC
* * *
64620158 TGTATGAAAAATATTTAAAATTATATTTTTAGTATTTTATGTGTAAAACTATTAGTAAACAATTA
1 TGTAT-AAAAATATTTAAAATTATATTTTTAATATTTTATGTCTAAAACTATAAGTAAACAATTA
64620223 TGTATAAAAATATTTAAAATTATATTTTTAATATTTTATGTCTAAAACTATAAGTAAACAATTA
1 TGTATAAAAATATTTAAAATTATATTTTTAATATTTTATGTCTAAAACTATAAGTAAACAATTA
64620287 TGTATAAAAATATTT
1 TGTATAAAAATATTT
64620302 TTTAAATGCA
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
64 71 0.93
65 5 0.07
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.44
Consensus pattern (64 bp):
TGTATAAAAATATTTAAAATTATATTTTTAATATTTTATGTCTAAAACTATAAGTAAACAATTA
Found at i:64622493 original size:18 final size:17
Alignment explanation
Indices: 64622470--64622531 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
64622460 AATAATAATG
*
64622470 TGTATAATAAAATTAAAA
1 TGTATAA-AAAATAAAAA
64622488 TGTATAAAAAATAAAAA
1 TGTATAAAAAATAAAAA
64622505 --TA-AAAGAAATAATAAAA
1 TGTATAAA-AAAT-A-AAAA
64622522 TGTATAAAAA
1 TGTATAAAAA
64622532 TATTAAGATA
Statistics
Matches: 37, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
14 3 0.08
15 6 0.16
16 1 0.03
17 13 0.35
18 7 0.19
19 4 0.11
20 3 0.08
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (17 bp):
TGTATAAAAAATAAAAA
Found at i:64622532 original size:18 final size:19
Alignment explanation
Indices: 64622458--64622533 Score: 56
Period size: 18 Copynumber: 4.3 Consensus size: 19
64622448 ATAACTAATG
**
64622458 GAAATAATAATGTGTATAA
1 GAAATAATAAAATGTATAA
* *
64622477 TAAA-ATTAAAATGTAT-A
1 GAAATAATAAAATGTATAA
* *
64622494 -AAA-AATAAAA-ATAAAA
1 GAAATAATAAAATGTATAA
64622510 GAAATAATAAAATGTATAA
1 GAAATAATAAAATGTATAA
64622529 -AAATA
1 GAAATA
64622534 TTAAGATAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 9
0.71 0.15 0.15
Matches are distributed among these distances:
15 2 0.05
16 10 0.23
17 4 0.09
18 21 0.48
19 7 0.16
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (19 bp):
GAAATAATAAAATGTATAA
Found at i:64623022 original size:22 final size:23
Alignment explanation
Indices: 64622990--64623041 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
64622980 AAACCACTTA
* *
64622990 AGACAT-A-AACATCTAACATCT
1 AGACATCACAACACCTAAAATCT
64623011 A-ACATCACAACACCTAAAATCT
1 AGACATCACAACACCTAAAATCT
64623033 AGACATCAC
1 AGACATCAC
64623042 CAAATCACGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 4 0.15
21 2 0.08
22 13 0.50
23 7 0.27
ACGTcount: A:0.48, C:0.29, G:0.04, T:0.19
Consensus pattern (23 bp):
AGACATCACAACACCTAAAATCT
Found at i:64631114 original size:16 final size:15
Alignment explanation
Indices: 64631088--64631119 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
64631078 ACTAGATCGG
64631088 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
64631103 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
64631119 C
1 C
64631120 GGCATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.28, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:64631576 original size:27 final size:28
Alignment explanation
Indices: 64631533--64631647 Score: 128
Period size: 28 Copynumber: 4.2 Consensus size: 28
64631523 GAGGAAGCAT
*
64631533 TCTGGTGGATCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
64631560 TCTGGTGGCTCTACCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* * *
64631588 TTTGGTGGCCCTGCCACAATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* * *
64631616 TCTGGTGACTCTGTCAC-AATATCTAT-
1 TCTGGTGGCTCTGCCACAAATATCTGTA
64631642 TCTGGT
1 TCTGGT
64631648 AGCCATGCTG
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
26 6 0.08
27 31 0.42
28 36 0.49
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:64633080 original size:649 final size:649
Alignment explanation
Indices: 64631843--64633141 Score: 2472
Period size: 649 Copynumber: 2.0 Consensus size: 649
64631833 GGTCCAACTT
64631843 AATCTGTTTCTATGGTTTGAACTGATCTGGACTATGGTTGGGTTAATTTACACACTGAGTTTCCC
1 AATCTGTTTCTATGGTTTGAACTGATCTGGACTATGGTTGGGTTAATTTACACACTGAGTTTCCC
* *
64631908 AAACTCACCCCTTAAGTTTATCCATGCAGGTAACCCCAACCATAGTGGACTTGGAGCTGTGAGGG
66 AAACTCACCCCTTAAGTTTATCCATACAGGTAACCCCAACCATAGTGGACTTGGAGCTGTAAGGG
64631973 ATTCGGAGTGGCCACACGTACTGCAACCTATTTTTCTCAGCTTTTATTTACTTTAATTATTTTGG
131 ATTCGGAGTGGCCACACGTACTGCAACCTATTTTTCTCAGCTTTTATTTACTTTAATTATTTTGG
*
64632038 GTTTAACTTGTAATAAGGCTGCTTTAATTATTTTTAATTGTTTGGGTTTATTTTGTTAGCTTAGG
196 GTTTAACTTGTAATAAGACTGCTTTAATTATTTTTAATTGTTTGGGTTTATTTTGTTAGCTTAGG
64632103 CATGATATTGATTTAAATGTTTGAAATTTAATAGCTCTAGGGCGCATTTTAAAAGAAATTATCTG
261 CATGATATTGATTTAAATGTTTGAAATTTAATAGCTCTAGGGCGCATTTTAAAAGAAATTATCTG
64632168 ATTTCAAAATATCGTGAAACAAGACAAAGTTTCGTAATAAAAACATTTTAAAAAAAAAGGATAAT
326 ATTTCAAAATATCGTGAAACAAGACAAAGTTTCGTAATAAAAACATTTTAAAAAAAAAGGATAAT
* *
64632233 AAGTGATTTCAATGGATAAAACGAAATGGTTGCTTCTAAACAATCGCACAGTTAAAGTGTGGTAA
391 AAGTGATTTCAATGGATAAAACGAAATGGTTGCTTCTAAACAATCACACAGTTAAAGTGTGGCAA
*
64632298 TGGTGGTGTGCATGTGTAGGAGTGGATCCGTGGAGAGCTTGGTACTTAAGGAGTCTAATAGACTC
456 TGGTGGTGTGCATGTCTAGGAGTGGATCCGTGGAGAGCTTGGTACTTAAGGAGTCTAATAGACTC
64632363 ACCTCCTCTTTTCTGATATCCTACCTGGGGCACAGCTTCTATTCACTTTAATTTAAAACGAAAAT
521 ACCTCCTCTTTTCTGATATCCTACCTGGGGCACAGCTTCTATTCACTTTAATTTAAAACGAAAAT
64632428 ATTCTTTGAACACTAAGAAAAGATTTTAAACAAAACATGACTACACTAGTAACGTTTCAATGTG
586 ATTCTTTGAACACTAAGAAAAGATTTTAAACAAAACATGACTACACTAGTAACGTTTCAATGTG
*
64632492 AATCTGTTTCTGTGGTTTGAACTGATCTGGACTATGGTTGGGTTAATTTACACACTGAGTTTCCC
1 AATCTGTTTCTATGGTTTGAACTGATCTGGACTATGGTTGGGTTAATTTACACACTGAGTTTCCC
*
64632557 AAACTCACCCCTTAATTTTATCCATACAGGTAACCCCAACCATAGTGGACTTGGAGCTGTAAGGG
66 AAACTCACCCCTTAAGTTTATCCATACAGGTAACCCCAACCATAGTGGACTTGGAGCTGTAAGGG
*
64632622 ATTCGGAGTGGCCACACGTACTGCAACTTATTTTTCTCAGCTTTTATTTACTTTAATTATTTTGG
131 ATTCGGAGTGGCCACACGTACTGCAACCTATTTTTCTCAGCTTTTATTTACTTTAATTATTTTGG
*
64632687 GTTTAACTTGTAATAAGACTGTTTTAATTATTTTTAATTGTTTGGGTTTATTTTGTTAGCTTAGG
196 GTTTAACTTGTAATAAGACTGCTTTAATTATTTTTAATTGTTTGGGTTTATTTTGTTAGCTTAGG
64632752 CATGATATTGATTTAAATGTTTGAAATTTAATAGCTCTAGGGCGCATTTTAAAAGAAATTATCTG
261 CATGATATTGATTTAAATGTTTGAAATTTAATAGCTCTAGGGCGCATTTTAAAAGAAATTATCTG
* *
64632817 ATTTCAAAATATCGTGAAACAAGACAAAGTTTCGTAATAAAAACGTTTTTAAAAAAAAGGATAAT
326 ATTTCAAAATATCGTGAAACAAGACAAAGTTTCGTAATAAAAACATTTTAAAAAAAAAGGATAAT
*
64632882 AAGTGATTTCAATGGATAAAACGAAATGGTTGCTTCTAAATAATCACACAGTTAAAGTGTGGCAA
391 AAGTGATTTCAATGGATAAAACGAAATGGTTGCTTCTAAACAATCACACAGTTAAAGTGTGGCAA
64632947 TGGTGGTGTGCATGTCTAGGAGTGGATCCGTGGAGAGCTTGGTACTTAAGGAGTCTAATAGACTC
456 TGGTGGTGTGCATGTCTAGGAGTGGATCCGTGGAGAGCTTGGTACTTAAGGAGTCTAATAGACTC
*
64633012 ACCTCCTCTTTTCTGATATCCTACCTGGTGCACAGCTTCTATTCACTTTAATTTAAAACGAAAAT
521 ACCTCCTCTTTTCTGATATCCTACCTGGGGCACAGCTTCTATTCACTTTAATTTAAAACGAAAAT
64633077 ATTCTTTGAACACTAAGAAAAGATTTTAAACAAAACATGACTACACTAGTAACGTTTCAATGTG
586 ATTCTTTGAACACTAAGAAAAGATTTTAAACAAAACATGACTACACTAGTAACGTTTCAATGTG
64633141 A
1 A
64633142 CACGTCGGGT
Statistics
Matches: 636, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
649 636 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (649 bp):
AATCTGTTTCTATGGTTTGAACTGATCTGGACTATGGTTGGGTTAATTTACACACTGAGTTTCCC
AAACTCACCCCTTAAGTTTATCCATACAGGTAACCCCAACCATAGTGGACTTGGAGCTGTAAGGG
ATTCGGAGTGGCCACACGTACTGCAACCTATTTTTCTCAGCTTTTATTTACTTTAATTATTTTGG
GTTTAACTTGTAATAAGACTGCTTTAATTATTTTTAATTGTTTGGGTTTATTTTGTTAGCTTAGG
CATGATATTGATTTAAATGTTTGAAATTTAATAGCTCTAGGGCGCATTTTAAAAGAAATTATCTG
ATTTCAAAATATCGTGAAACAAGACAAAGTTTCGTAATAAAAACATTTTAAAAAAAAAGGATAAT
AAGTGATTTCAATGGATAAAACGAAATGGTTGCTTCTAAACAATCACACAGTTAAAGTGTGGCAA
TGGTGGTGTGCATGTCTAGGAGTGGATCCGTGGAGAGCTTGGTACTTAAGGAGTCTAATAGACTC
ACCTCCTCTTTTCTGATATCCTACCTGGGGCACAGCTTCTATTCACTTTAATTTAAAACGAAAAT
ATTCTTTGAACACTAAGAAAAGATTTTAAACAAAACATGACTACACTAGTAACGTTTCAATGTG
Found at i:64638861 original size:24 final size:24
Alignment explanation
Indices: 64638829--64638876 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
64638819 AGCAGAACTT
64638829 ACACCCTACACCTGTGTCGACTCC
1 ACACCCTACACCTGTGTCGACTCC
64638853 ACACCCTACACCTGTGTCGACTCC
1 ACACCCTACACCTGTGTCGACTCC
64638877 TTCTCTTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.46, G:0.12, T:0.21
Consensus pattern (24 bp):
ACACCCTACACCTGTGTCGACTCC
Found at i:64640178 original size:28 final size:28
Alignment explanation
Indices: 64640109--64640217 Score: 152
Period size: 28 Copynumber: 4.0 Consensus size: 28
64640099 GAGGAAGCAT
64640109 TCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
64640136 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
64640164 TCTGGTGGC-CTTGCCACAATTATCTGTA
1 TCTGGTGGCTC-TGCCACAAATATCTGTA
* *
64640192 TCTGGTGACTCTGTCAC-AATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGT
64640218 TCTAGCAGCC
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
27 35 0.48
28 37 0.51
29 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:64640213 original size:55 final size:55
Alignment explanation
Indices: 64640108--64640218 Score: 163
Period size: 55 Copynumber: 2.0 Consensus size: 55
64640098 GGAGGAAGCA
*
64640108 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCACAAATATCTGT
* *
64640163 TTCTGGTGGC-CTTGCCACAATTATCTGTATCTGGTGACTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTC-TGCCACAAATATCTG-ATCTGGTGACTCTGCCACAAATATCTGT
64640218 T
1 T
64640219 CTAGCAGCCA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
54 1 0.02
55 34 0.67
56 16 0.31
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (55 bp):
TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCACAAATATCTGT
Found at i:64642507 original size:28 final size:28
Alignment explanation
Indices: 64642465--64642530 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
64642455 ATAGTGCTTG
* * * *
64642465 CAGTAACAGTTTGGGCCTGAGCCCTATT
1 CAGTATCAGTGTGGGCCTAAGCCCGATT
64642493 CAGTATCAGTGTGGGCCTAAGCCCGATT
1 CAGTATCAGTGTGGGCCTAAGCCCGATT
*
64642521 TAGTATCAGT
1 CAGTATCAGT
64642531 ATAGTGCAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.29
Consensus pattern (28 bp):
CAGTATCAGTGTGGGCCTAAGCCCGATT
Found at i:64647935 original size:46 final size:46
Alignment explanation
Indices: 64647882--64648054 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
64647872 TTGAGCATCT
64647882 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
*** * *
64647928 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-G-CT-TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATGTCC
*
64647975 -AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
1 GAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
*
64648021 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64648055 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 2 0.02
46 65 0.61
47 31 0.29
48 2 0.02
49 2 0.02
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:64652156 original size:40 final size:40
Alignment explanation
Indices: 64652077--64652234 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
64652067 TTCGAATGAT
* * * *
64652077 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
64652117 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
64652157 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
64652197 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
64652235 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:64652255 original size:80 final size:80
Alignment explanation
Indices: 64652077--64652264 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
64652067 TTCGAATGAT
* *
64652077 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
64652142 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
64652157 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
64652218 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
64652238 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
64652265 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:64655524 original size:29 final size:29
Alignment explanation
Indices: 64655496--64655597 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
64655486 CCTCCGAGCT
** * * *
64655496 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
64655525 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64655554 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64655583 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
64655598 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64662544 original size:49 final size:49
Alignment explanation
Indices: 64662484--64662691 Score: 332
Period size: 49 Copynumber: 4.3 Consensus size: 49
64662474 GTATGAGATA
*
64662484 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
64662533 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
64662582 TATATATG-GATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* * * *
64662630 TATATATGTGATAAGGCCCAGTGGCCGACGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
*
64662677 TATAAATGTGATAAG
1 TATATATGTGATAAG
64662692 TCCCGAAGGG
Statistics
Matches: 152, Mismatches: 6, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
47 17 0.11
48 47 0.31
49 88 0.58
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
Found at i:64662634 original size:97 final size:98
Alignment explanation
Indices: 64662484--64662691 Score: 332
Period size: 97 Copynumber: 2.2 Consensus size: 98
64662474 GTATGAGATA
*
64662484 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
* *
64662549 CCTAATGGCCGATGTGATGAATGTGAAAGTGTG
66 CCCAATGGCCGACGTGATGAATGTGAAAGTGTG
64662582 TATATATG-GATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
* * *
64662646 CCCAGTGGCCGACGTGATGGATGTGGAA--GTG
66 CCCAATGGCCGACGTGATGAATGTGAAAGTGTG
*
64662677 TATAAATGTGATAAG
1 TATATATGTGATAAG
64662692 TCCCGAAGGG
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 10 0.10
96 6 0.06
97 78 0.76
98 8 0.08
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (98 bp):
TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
CCCAATGGCCGACGTGATGAATGTGAAAGTGTG
Found at i:64671398 original size:40 final size:39
Alignment explanation
Indices: 64671354--64671479 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
64671344 GGGACTCAAC
*
64671354 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
64671394 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
64671434 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
64671474 CCGGAT
1 CCGGAT
64671480 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:64671438 original size:80 final size:80
Alignment explanation
Indices: 64671293--64671479 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
64671283 GCTACACATT
* * *
64671293 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
64671357 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
64671373 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
64671436 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
64671454 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
64671480 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:64679470 original size:40 final size:39
Alignment explanation
Indices: 64679426--64679551 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
64679416 GGGACTCAAC
*
64679426 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
64679466 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
64679506 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
64679546 CCGGAT
1 CCGGAT
64679552 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:64679510 original size:80 final size:80
Alignment explanation
Indices: 64679365--64679551 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
64679355 GCTACACATT
* * *
64679365 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
64679429 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
64679445 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
64679508 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
64679526 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
64679552 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:64684183 original size:44 final size:44
Alignment explanation
Indices: 64684135--64684220 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 44
64684125 ATCCCTTTCA
* **
64684135 TTTAGGTGTCAACTTTTTTTTAACAGATATTATACCTTATATCT
1 TTTAGGTGTCAACATTAATTTAACAGATATTATACCTTATATCT
* * *
64684179 TTTAGGTGTCAACATTAATTTAATAGATGTTATGCCTTATAT
1 TTTAGGTGTCAACATTAATTTAACAGATATTATACCTTATAT
64684221 GATGCTATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.48
Consensus pattern (44 bp):
TTTAGGTGTCAACATTAATTTAACAGATATTATACCTTATATCT
Found at i:64687392 original size:40 final size:39
Alignment explanation
Indices: 64687347--64687554 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
64687337 CGGAATACAA
*
64687347 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64687387 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64687427 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
64687467 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
64687507 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
64687547 CCGGATAT
1 CCGGATAT
64687555 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:64687487 original size:80 final size:80
Alignment explanation
Indices: 64687347--64687553 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
64687337 CGGAATACAA
* * *
64687347 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
64687411 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
64687427 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
64687491 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
64687507 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
64687554 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:64695427 original size:40 final size:39
Alignment explanation
Indices: 64695382--64695589 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
64695372 CGGAATACAA
*
64695382 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64695422 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64695462 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
64695502 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
64695542 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
64695582 CCGGATAT
1 CCGGATAT
64695590 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:64695522 original size:80 final size:80
Alignment explanation
Indices: 64695382--64695588 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
64695372 CGGAATACAA
* * *
64695382 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
64695446 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
64695462 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
64695526 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
64695542 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
64695589 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:64703481 original size:40 final size:39
Alignment explanation
Indices: 64703436--64703643 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
64703426 CGGAATACAA
*
64703436 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64703476 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64703516 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
64703556 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
64703596 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
64703636 CCGGATAT
1 CCGGATAT
64703644 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:64703576 original size:80 final size:80
Alignment explanation
Indices: 64703436--64703642 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
64703426 CGGAATACAA
* * *
64703436 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
64703500 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
64703516 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
64703580 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
64703596 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
64703643 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:64708983 original size:19 final size:19
Alignment explanation
Indices: 64708960--64709001 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
64708950 TTTTATTGAT
64708960 ATTTTTA-TATTTAATTTA
1 ATTTTTATTATTTAATTTA
*
64708978 ATTTTTATTATTTATTTTA
1 ATTTTTATTATTTAATTTA
*
64708997 GTTTT
1 ATTTT
64709002 GATTCTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (19 bp):
ATTTTTATTATTTAATTTA
Found at i:64709141 original size:35 final size:35
Alignment explanation
Indices: 64709073--64709141 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
64709063 TAATTGTGTT
*
64709073 ATTAATTTATTATTTTAGATTCTAAATTTAAATTC
1 ATTAATTTATTATTTTAGATTCTAAATTAAAATTC
* * *
64709108 ATTAATTT-TTATATTTAGTTTTTAAGTTAAAATT
1 ATTAATTTATTAT-TTTAGATTCTAAATTAAAATT
64709142 TTAACTTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 4 0.14
35 25 0.86
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (35 bp):
ATTAATTTATTATTTTAGATTCTAAATTAAAATTC
Found at i:64709335 original size:42 final size:42
Alignment explanation
Indices: 64709270--64709517 Score: 273
Period size: 42 Copynumber: 5.9 Consensus size: 42
64709260 AATAGTCATA
* * *
64709270 TTCTTTAGCGGCGTTTATAGGAAAAGTGCCGCTAAAGGTCTG
1 TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTG
* * ** *
64709312 TTCTATAGCGGCATTTGTGGGAAAAATGCTGCTAAAGGTCTG
1 TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTG
*
64709354 TTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTG
1 TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTG
* * * * *
64709396 TTCTGTAGAGGCGTTTGTGGAATAAAGCGACGCTAAAGGCCAT-
1 TTCTTTAGCGGCGTTTGTGGGA-AAAGCGCCGCTAAAGGTC-TG
* * * *
64709439 ATCTTTAGCGGCGTTTGTAGGAAAAGAGCCGCTAAAGGCCATG
1 TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTC-TG
* * *
64709482 ATCTTTAGCGGCGCTTGTGGGTAAAGCGCCGCTAAA
1 TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAA
64709518 CGCCACAAAA
Statistics
Matches: 177, Mismatches: 26, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
42 111 0.63
43 65 0.37
44 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (42 bp):
TTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTG
Found at i:64709463 original size:85 final size:84
Alignment explanation
Indices: 64709266--64709522 Score: 270
Period size: 85 Copynumber: 3.0 Consensus size: 84
64709256 TTTTAATAGT
* * *
64709266 CATATTCTTTAGCGGCGTTTATAGGAAAAGTGCCGCTAAAGGTCTGTTCTATAGCGGCATTTGTG
1 CATA-TCTTTAGCGGCGTTTGTAGGAAAAGAGCCGCTAAAGGTCTGTTCTATAGCGGCGTTTGT-
* *
64709331 GGAA-AAATGC-TGCTAAAGGT
64 GGAATAAA-GCGCGCTAAAGGC
* * * * * *
64709351 C-TGTTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTGTTCTGTAGAGGCGTTTGTG
1 CAT-ATCTTTAGCGGCGTTTGTAGGAAAAGAGCCGCTAAAGGTCTGTTCTATAGCGGCGTTTGTG
64709415 GAATAAAGCGACGCTAAAGGC
65 GAATAAAGCG-CGCTAAAGGC
* * * *
64709436 CATATCTTTAGCGGCGTTTGTAGGAAAAGAGCCGCTAAAGGCCATGATCTTTAGCGGCGCTTGTG
1 CATATCTTTAGCGGCGTTTGTAGGAAAAGAGCCGCTAAAGGTC-TGTTCTATAGCGGCGTTTGTG
* *
64709501 G-GTAAAGCGCCGCTAAACGC
65 GAATAAAGCG-CGCTAAAGGC
64709521 CA
1 CA
64709523 CAAAAATGTT
Statistics
Matches: 144, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
83 6 0.04
84 56 0.39
85 63 0.44
86 19 0.13
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (84 bp):
CATATCTTTAGCGGCGTTTGTAGGAAAAGAGCCGCTAAAGGTCTGTTCTATAGCGGCGTTTGTGG
AATAAAGCGCGCTAAAGGC
Found at i:64711570 original size:49 final size:49
Alignment explanation
Indices: 64711443--64711749 Score: 469
Period size: 49 Copynumber: 6.3 Consensus size: 49
64711433 CCCTTCGGGA
* * * * * *
64711443 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64711490 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64711537 CTTATCACATATATATACACCTTCTCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64711586 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64711635 CTTATCACATATATACATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64711684 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64711733 CTTATCACATATATATA
1 CTTATCACATATATATA
64711750 TCTCATACAT
Statistics
Matches: 240, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 45 0.19
49 194 0.81
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64715859 original size:40 final size:40
Alignment explanation
Indices: 64715771--64715866 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
64715761 TAAGTCGGTA
* *
64715771 TCGCACACTTAGTGCCTTTTATAGCCGAAGCTATGCCAAC
1 TCGCACACTTAGTGCCATTTATAGCCGAAGCTATGCAAAC
** * **
64715811 TCAAACACTTAGTGCCATTTGTAGCCGAAGCTATATTAAAC
1 TCGCACACTTAGTGCCATTTATAGCCGAAGCTAT-GCAAAC
64715852 -CGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
64715867 GAGCATAGTC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
40 43 0.93
41 3 0.07
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (40 bp):
TCGCACACTTAGTGCCATTTATAGCCGAAGCTATGCAAAC
Found at i:64722386 original size:47 final size:49
Alignment explanation
Indices: 64722331--64722466 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 49
64722321 GGGTAAGGTA
64722331 CCAATGCCATGTCCTAGACATGGTCTTACACA-AGCTCAT-ATC-TCGA-G
1 CCAATGCCATGTCCTAGACATGGTCTTACACAGA-CT-ATCATCATCGAGG
* ** *
64722378 TCAATGCCATACCCTAGACATGGTCTTACACTGACTATCATCATCGAGG
1 CCAATGCCATGTCCTAGACATGGTCTTACACAGACTATCATCATCGAGG
* * *
64722427 CCAACGCCATGTCCCAGACATGGTCTTACACTGACATATC
1 CCAATGCCATGTCCTAGACATGGTCTTACACAGAC-TATC
64722467 TTGTAGCCGA
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
46 2 0.03
47 33 0.44
48 5 0.07
49 31 0.41
50 4 0.05
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (49 bp):
CCAATGCCATGTCCTAGACATGGTCTTACACAGACTATCATCATCGAGG
Found at i:64722455 original size:49 final size:47
Alignment explanation
Indices: 64722331--64722597 Score: 185
Period size: 46 Copynumber: 5.7 Consensus size: 47
64722321 GGGTAAGGTA
* *
64722331 CCAATGCCATGTCCTAGACATGGTCTTACAC-AAGCTCAT-ATCTCGAG
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGA-CT-ATCATCTCGAG
* *
64722378 TCAATGCCAT-ACCCTAGACATGGTCTTACACTGACTATCATCATCGAGG
1 CCAATGCCATGTCCC-AGACATGGTCTTACACTGACTATCATC-TCGA-G
* *
64722427 CCAACGCCATGTCCCAGACATGGTCTTACACTGAC-AT-ATCTTGTAG
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCG-AG
* * *
64722473 CCGATG-CGTGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGG
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGACTAT-CATCTCGA-G
* * * * * * * * *
64722519 CCGAT-ACATGTCCCATACAT-ATCATACACTAACTCTCGTCTCAATG
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGA-G
* * * *
64722565 TCGATGCCATGTCTCAGACATGGTCTTATACTG
1 CCAATGCCATGTCCCAGACATGGTCTTACACTG
64722598 GCTCTCATAA
Statistics
Matches: 175, Mismatches: 30, Indels: 29
0.75 0.13 0.12
Matches are distributed among these distances:
44 13 0.07
45 14 0.08
46 55 0.31
47 47 0.27
48 14 0.08
49 29 0.17
50 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
CCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGAG
Found at i:64722533 original size:46 final size:47
Alignment explanation
Indices: 64722337--64722642 Score: 152
Period size: 46 Copynumber: 6.6 Consensus size: 47
64722327 GGTACCAATG
* * * * * *
64722337 CCATGTCCTAGACATGGTCTTACAC-AAGCTCATATCTCGA-GTCAAT
1 CCATGTCCCAGACATGGTCTTACACTGA-CTTACATCTCGAGGCCGAT
* * *
64722383 GCCAT-ACCCTAGACATGGTCTTACACTGAC-TATCATCATCGAGGCCAACG
1 -CCATGTCCC-AGACATGGTCTTACACTGACTTA-CATC-TCGAGGCCGA-T
* *
64722433 CCATGTCCCAGACATGGTCTTACACTGAC--ATATCTTGTA-GCCGAT
1 CCATGTCCCAGACATGGTCTTACACTGACTTACATCTCG-AGGCCGAT
* * *
64722478 GCGTGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCGAT
1 CCATGTCCCAGACATGGTCTTACACTGACTTACATCTCGAGGCCGAT
* * * * * * * * *
64722524 ACATGTCCCATACAT-ATCATACACTAACTCT-CGTCTCAATGTCGAT
1 CCATGTCCCAGACATGGTCTTACACTGACT-TACATCTCGAGGCCGAT
* * * * * *
64722570 GCCATGTCTCAGACATGGTCTTATACTGGCTCT-CATAAT-GTGGTCGAT
1 -CCATGTCCCAGACATGGTCTTACACTGACT-TACAT-CTCGAGGCCGAT
*
64722618 GCATGTCCCAGACAT-GTCTTACACT
1 CCATGTCCCAGACATGGTCTTACACT
64722643 AGCTCACATA
Statistics
Matches: 200, Mismatches: 44, Indels: 31
0.73 0.16 0.11
Matches are distributed among these distances:
44 12 0.06
45 14 0.07
46 63 0.31
47 54 0.27
48 25 0.12
49 29 0.14
50 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
CCATGTCCCAGACATGGTCTTACACTGACTTACATCTCGAGGCCGAT
Found at i:64730956 original size:40 final size:40
Alignment explanation
Indices: 64730848--64731057 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
64730838 CGGGATTTAA
* * * * *
64730848 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
64730888 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64730928 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64730968 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64731008 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64731048 CCGGATATAT
1 CCGGATATAT
64731058 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:64739091 original size:40 final size:40
Alignment explanation
Indices: 64738983--64739192 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
64738973 CGGGATTTAA
* * * * *
64738983 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
64739023 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64739063 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64739103 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64739143 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64739183 CCGGATATAT
1 CCGGATATAT
64739193 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:64747451 original size:16 final size:15
Alignment explanation
Indices: 64747426--64747459 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
64747416 AAAGTTGATA
*
64747426 ATAATTAATATATATT
1 ATAATAAATATA-ATT
64747442 ATAATAAATATAATT
1 ATAATAAATATAATT
64747457 ATA
1 ATA
64747460 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:64749379 original size:2 final size:2
Alignment explanation
Indices: 64749372--64749398 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
64749362 GAGACTAGTC
64749372 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
64749399 CATGTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64751359 original size:30 final size:30
Alignment explanation
Indices: 64751325--64751385 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
64751315 TCCTTAACTC
64751325 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
64751355 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
64751385 A
1 A
64751386 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:64753644 original size:40 final size:40
Alignment explanation
Indices: 64753599--64753766 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
64753589 CGGAATATAA
64753599 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
64753639 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
64753679 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
64753719 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
64753759 CCGGATAT
1 CCGGATAT
64753767 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:64761595 original size:40 final size:40
Alignment explanation
Indices: 64761550--64761717 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
64761540 CGGAATATAA
64761550 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
64761590 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
64761630 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
64761670 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
64761710 CCGGATAT
1 CCGGATAT
64761718 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:64766925 original size:30 final size:30
Alignment explanation
Indices: 64766891--64766951 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
64766881 TCCTTAACTC
64766891 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
64766921 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
64766951 A
1 A
64766952 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:64769923 original size:26 final size:26
Alignment explanation
Indices: 64769870--64769936 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
64769860 CATAGAGCCA
*
64769870 TAATCAGGAAGTTCACAAAGAAATTT
1 TAATCAGGAAGCTCACAAAGAAATTT
*
64769896 TAATCAGGAAGCTCACAAAG-AGTGTT
1 TAATCAGGAAGCTCACAAAGAAAT-TT
*
64769922 TAAACAGGAAGCTCA
1 TAATCAGGAAGCTCA
64769937 GATGAGCCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 2 0.05
26 35 0.95
ACGTcount: A:0.43, C:0.15, G:0.19, T:0.22
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAAATTT
Found at i:64770078 original size:65 final size:65
Alignment explanation
Indices: 64769996--64770150 Score: 184
Period size: 65 Copynumber: 2.4 Consensus size: 65
64769986 AGCTAGCCAT
* * * ** *
64769996 AACAGGACACCCACAAATAGTTGCGTTTGTTTCTGCAACATATGCCGGATCACAACCAATCATAA
1 AACAGGACGCTCACAAATAGTTGCGTTTGTGTCCACAACATATGCAGGATCACAACCAATCATAA
* * *** *
64770061 AATAGGACGCTCACAAATAGTTGCGTTTGTGTCCACAATATATGCAGGATCACAATTGATCATAT
1 AACAGGACGCTCACAAATAGTTGCGTTTGTGTCCACAACATATGCAGGATCACAACCAATCATAA
* *
64770126 AACAGTACGCTCACAAAGAGTTGCG
1 AACAGGACGCTCACAAATAGTTGCG
64770151 GTAGTCAGGA
Statistics
Matches: 75, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
65 75 1.00
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.25
Consensus pattern (65 bp):
AACAGGACGCTCACAAATAGTTGCGTTTGTGTCCACAACATATGCAGGATCACAACCAATCATAA
Found at i:64774431 original size:16 final size:16
Alignment explanation
Indices: 64774407--64774437 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64774397 CTTCTTCACT
64774407 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
64774423 TACTTACTTACTTAA
1 TACTCACTTACTTAA
64774438 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:64774443 original size:20 final size:20
Alignment explanation
Indices: 64774404--64774443 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
64774394 AATCTTCTTC
* *
64774404 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
64774424 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
64774444 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:64774740 original size:55 final size:53
Alignment explanation
Indices: 64774604--64774807 Score: 196
Period size: 55 Copynumber: 3.8 Consensus size: 53
64774594 CGGGTACCTT
* * *
64774604 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTATGAACTC
* * *
64774657 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTCACCTTATAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT-ACCTTAT-G-AACTC
* *** * *
64774712 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTATG-AA-CTC
* * * *
64774766 ACCAATTGTCATGCCTTGGCATGGTCTTACATGGTATCCTTA
1 ACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTTA
64774808 AACCCTAATG
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
52 4 0.03
53 40 0.32
54 8 0.06
55 68 0.55
56 4 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTATGAACTC
Found at i:64775413 original size:25 final size:25
Alignment explanation
Indices: 64775379--64775437 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
64775369 GCATAAGTTG
64775379 TCTAACATACTTTAAAACCTCATAT
1 TCTAACATACTTTAAAACCTCATAT
64775404 TCTAACATACTTTAAAACCTCATAT
1 TCTAACATACTTTAAAACCTCATAT
*
64775429 TCTATCATA
1 TCTAACATA
64775438 AAACACAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (25 bp):
TCTAACATACTTTAAAACCTCATAT
Found at i:64779776 original size:39 final size:39
Alignment explanation
Indices: 64779695--64779857 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
64779685 TATGGTAACC
* * *
64779695 CGCACAAATGGCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
64779735 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
64779774 CGCACCATTGCCTTCGGGCTTAGCCCAGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
64779813 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
64779852 CGCACA
1 CGCACA
64779858 TTCATACACA
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 95 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:64787896 original size:16 final size:16
Alignment explanation
Indices: 64787877--64787907 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64787867 CTTCTTCACT
64787877 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
64787893 TACTTACTTACTTAA
1 TACTCACTTACTTAA
64787908 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:64787913 original size:20 final size:20
Alignment explanation
Indices: 64787874--64787913 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
64787864 AAACTTCTTC
* *
64787874 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
64787894 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
64787914 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:64788231 original size:55 final size:52
Alignment explanation
Indices: 64788102--64788303 Score: 183
Period size: 55 Copynumber: 3.8 Consensus size: 52
64788092 CGGGTACCTT
* *
64788102 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTATGAACTC
* * *
64788154 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTCGCCTTATAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT-GCC-TAT-G-AACTC
* *** *
64788209 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCT-TAGAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTAT-G-AA-CTC
** * * *
64788263 ACCAATTTTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
64788304 AAACCCTAAT
Statistics
Matches: 124, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
51 4 0.03
52 34 0.27
53 8 0.06
54 9 0.07
55 65 0.52
56 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (52 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTATGAACTC
Found at i:64794965 original size:40 final size:40
Alignment explanation
Indices: 64794910--64795050 Score: 230
Period size: 40 Copynumber: 3.5 Consensus size: 40
64794900 TGGATGTAAC
*
64794910 AACCAGCACGAATGCCTTCGAGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
64794950 AACCAGCACGAATGCCTTCGGGACTTAACCTGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
64794990 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
64795030 AACTAGCAC-AATTGCCTTCGG
1 AACCAGCACGAA-TGCCTTCGG
64795051 ATCTTAGTCC
Statistics
Matches: 94, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.02
40 92 0.98
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:64797794 original size:21 final size:21
Alignment explanation
Indices: 64797770--64797817 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
64797760 GATCCACTAA
64797770 TAAACATATCAAAAATATGTC
1 TAAACATATCAAAAATATGTC
64797791 TAAACATATCAAAAATATGTC
1 TAAACATATCAAAAATATGTC
*
64797812 AAAACA
1 TAAACA
64797818 AGCCTTTCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.56, C:0.15, G:0.04, T:0.25
Consensus pattern (21 bp):
TAAACATATCAAAAATATGTC
Found at i:64800167 original size:42 final size:41
Alignment explanation
Indices: 64800071--64800210 Score: 171
Period size: 40 Copynumber: 3.5 Consensus size: 41
64800061 GATATAACGC
* * *
64800071 CTCGCTCAAATGCCTTCGGGAC-AAACCCCGGTTATAG-TAA
1 CTCGCACAAATGCCTTCGGGACTTAACCCGGGTT-TAGTTAA
*
64800111 CTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTTTAA
1 CTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAG-TTAA
*
64800153 CTCGCACAAATGCCTTCGGG-CTTAACCCGGATTTA-TTAA
1 CTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTTAA
* *
64800192 CTCGCACGAACGCCTTCGG
1 CTCGCACAAATGCCTTCGG
64800211 ATCTTAGTCC
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
39 21 0.24
40 23 0.26
41 23 0.26
42 22 0.25
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (41 bp):
CTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTTAA
Found at i:64808181 original size:40 final size:40
Alignment explanation
Indices: 64808135--64808264 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 40
64808125 CGACCGCTCA
*
64808135 AATGCCTTCGGGAC-AAACCCCGGTTATAGTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCCGGTT-TAGTAACTCGCACG
* *
64808175 AATGCCTTCGGGACTTAACCCGGGTTTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAACCCCGGTTTAGTAACTCGCACG
*
64808215 AATGCCTTCGGG-CTTAA-CCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCCGG-TTTAGTAACTCGCACG
*
64808254 AACGCCTTCGG
1 AATGCCTTCGG
64808265 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
38 4 0.05
39 29 0.36
40 39 0.48
41 9 0.11
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCCGGTTTAGTAACTCGCACG
Found at i:64816695 original size:22 final size:22
Alignment explanation
Indices: 64816667--64816711 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
64816657 ATGATAAAGG
64816667 CACTTAGGATTTAACCCACTTA
1 CACTTAGGATTTAACCCACTTA
64816689 CACTTAGGATTTAACCCACTTA
1 CACTTAGGATTTAACCCACTTA
64816711 C
1 C
64816712 TCCATAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (22 bp):
CACTTAGGATTTAACCCACTTA
Found at i:64828927 original size:50 final size:49
Alignment explanation
Indices: 64828848--64829086 Score: 250
Period size: 50 Copynumber: 4.8 Consensus size: 49
64828838 ATTATGAATA
*
64828848 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATACTGTTAA-T
* * **
64828898 CACTTGTGTAGTACTAAGTGCAGGCTACTATGCT-TACTCAATGACT-TCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACG-TGTA-TC-AT-ACTGTTAAT
* * *
64828949 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-AATGATGAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATACTG-TTA-AT
* * * * * *
64828999 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATACTGTTAAT
* *
64829048 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA
64829087 GATAGCTTCG
Statistics
Matches: 157, Mismatches: 23, Indels: 19
0.79 0.12 0.10
Matches are distributed among these distances:
47 2 0.01
49 37 0.24
50 72 0.46
51 39 0.25
52 4 0.03
53 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (49 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATACTGTTAAT
Found at i:64829024 original size:101 final size:99
Alignment explanation
Indices: 64828848--64829086 Score: 315
Period size: 101 Copynumber: 2.4 Consensus size: 99
64828838 ATTATGAATA
* * * *
64828848 CACATGTGTAGTACTAAGTGTAGGCTACTACGTGTATCATACTGTTAAGTCACTTGTGTAGTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATAATGTGAAGTCACGTGTGTAGTACT
*
64828913 AAGTGCAGGCTACTATGCT-TACTCA-A-TGACTTCGAT
66 AAGTGCAGGCTACTACG-TGTAC-CAGATTG--TT-GAT
*
64828949 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-AATGATGAGGTCACGTGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATAATG-TGAAGTCACGTGTGTAGTAC
*
64829013 TAAGTGTAGGCTACTACGTGTACCAGATTGTTGAT
65 TAAGTGCAGGCTACTACGTGTACCAGATTGTTGAT
* *
64829048 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA
64829087 GATAGCTTCG
Statistics
Matches: 125, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 40 0.32
100 8 0.06
101 75 0.60
102 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (99 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCATAATGTGAAGTCACGTGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCAGATTGTTGAT
Found at i:64830707 original size:28 final size:28
Alignment explanation
Indices: 64830656--64830736 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
64830646 TGGCTGCCAG
* * *
64830656 AACAGAT-ATTGTGACAGAGTCACCATA
1 AACAGATAATTGTGGCAGAGCCACCAAA
* * *
64830683 TACATATAATTGTGGCAGGGCCACCAAA
1 AACAGATAATTGTGGCAGAGCCACCAAA
*
64830711 AACAGATATTTGTGGCAGAGCCACCA
1 AACAGATAATTGTGGCAGAGCCACCA
64830737 GAACGCTTCC
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
27 5 0.12
28 38 0.88
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (28 bp):
AACAGATAATTGTGGCAGAGCCACCAAA
Found at i:64831842 original size:17 final size:17
Alignment explanation
Indices: 64831820--64831852 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
64831810 TCGGCTATGG
64831820 AGAAAA-GATAAGATGAA
1 AGAAAAGGA-AAGATGAA
64831837 AGAAAAGGAAAGATGA
1 AGAAAAGGAAAGATGA
64831853 GAAGGGAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (17 bp):
AGAAAAGGAAAGATGAA
Found at i:64838590 original size:28 final size:28
Alignment explanation
Indices: 64838507--64838606 Score: 100
Period size: 28 Copynumber: 3.7 Consensus size: 28
64838497 GAACATGGAA
*
64838507 ACCAG-AACAGATA-TTGTGACAGAGTC
1 ACCAGAAACAGATATTTGTGACAGAGCC
* * * *
64838533 ACCAGATACAAATAATTGTTG-CAGGGCC
1 ACCAGAAACAGATATTTG-TGACAGAGCC
*
64838561 ACTAGAAACAGATATTTGTGACAGAGCC
1 ACCAGAAACAGATATTTGTGACAGAGCC
*
64838589 ACCA-AATCAGATATTTGT
1 ACCAGAAACAGATATTTGT
64838607 AGCAGAACCA
Statistics
Matches: 59, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
26 5 0.08
27 21 0.36
28 31 0.53
29 2 0.03
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (28 bp):
ACCAGAAACAGATATTTGTGACAGAGCC
Found at i:64838619 original size:55 final size:55
Alignment explanation
Indices: 64838512--64838622 Score: 143
Period size: 55 Copynumber: 2.0 Consensus size: 55
64838502 TGGAAACCAG
* * * **
64838512 AACAGATATTGTGACAGAGTCACCAGATACAAATAATTGTTGCAGGGCCACTAGA
1 AACAGATATTGTGACAGAGCCACCAAATACAAATAATTGTAGCAGAACCACTAGA
* *
64838567 AACAGATATTTGTGACAGAGCCACCAAAT-CAGATATTTGTAGCAGAACCACTAGA
1 AACAGATA-TTGTGACAGAGCCACCAAATACAAATAATTGTAGCAGAACCACTAGA
64838622 A
1 A
64838623 CGCTTCCTCC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
55 30 0.62
56 18 0.38
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.22
Consensus pattern (55 bp):
AACAGATATTGTGACAGAGCCACCAAATACAAATAATTGTAGCAGAACCACTAGA
Found at i:64839074 original size:16 final size:16
Alignment explanation
Indices: 64839037--64839066 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64839027 CAAAATGTCG
64839037 GCTTTTCGGCATTTTA
1 GCTTTTCGGCATTTTA
64839053 GCTTTTCGGC-TTTT
1 GCTTTTCGGCATTTT
64839067 TGACTTTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.07, C:0.20, G:0.20, T:0.53
Consensus pattern (16 bp):
GCTTTTCGGCATTTTA
Found at i:64839731 original size:17 final size:17
Alignment explanation
Indices: 64839709--64839741 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
64839699 TAGGCTATGG
64839709 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
*
64839726 AGAAAAGGAAAGATGA
1 AGAAAAGAAAAGATGA
64839742 GAAGGGAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:64845721 original size:40 final size:39
Alignment explanation
Indices: 64845685--64845791 Score: 151
Period size: 39 Copynumber: 2.7 Consensus size: 39
64845675 ATATCCGGAC
*
64845685 TAAGATCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
* * * *
64845725 TAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
64845764 TAAGTCCCGAAGGCATTCGTGCGAGTTA
1 TAAGT-CCGAAGGCATTCGTGCGAGTTA
64845792 CTATAACCGG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.58
40 25 0.42
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGT
Found at i:64845792 original size:40 final size:40
Alignment explanation
Indices: 64845691--64845829 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 40
64845681 GGACTAAGAT
* * *
64845691 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
*
64845730 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* *
64845770 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTC
* *
64845810 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
64845830 CGTTATATCC
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.38
40 46 0.52
41 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:64845853 original size:79 final size:79
Alignment explanation
Indices: 64845690--64845855 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
64845680 CGGACTAAGA
* * *
64845690 TCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCACTA
*
64845755 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * * *
64845769 CCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTCCCGAAGGCATTTGAGCGAGTCG
1 TCCGAAGGCATTCGTGCGAGTTAATA-AATCC-GGGTTAAG-CCCGAAGGCATTTGAGCGAGTCA
* * *
64845832 TTATATCC-GGTTAAAT
63 CTAAACCCGGGTTAAAT
64845848 TCCGAAGG
1 TCCGAAGG
64845856 TACGTGATTC
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
79 40 0.56
80 32 0.44
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCGAGTCACTA
AACCCGGGTTAAAT
Found at i:64853803 original size:40 final size:40
Alignment explanation
Indices: 64853702--64853839 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 40
64853692 GGACTAAGAT
* * *
64853702 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
64853741 CCGAAGGCATT-GTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* *
64853780 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTC
* *
64853820 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
64853840 CGTTATATCG
Statistics
Matches: 89, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
38 24 0.27
39 22 0.25
40 34 0.38
41 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:64860070 original size:30 final size:29
Alignment explanation
Indices: 64860034--64860093 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 29
64860024 TTCCCGAGCC
64860034 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATT-TGCAAAAGTT
*
64860064 TAGGGGCAAAATGGTAATTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTTGCAAAAGTT
64860093 T
1 T
64860094 GTATTAAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 10 0.36
30 17 0.61
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (29 bp):
TAGGGGCAAAATGGTAATTTGCAAAAGTT
Found at i:64860818 original size:49 final size:49
Alignment explanation
Indices: 64860746--64860931 Score: 268
Period size: 49 Copynumber: 3.8 Consensus size: 49
64860736 TGAGGTCACG
*
64860746 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * *
64860795 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACT--TCGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCG--CA
* * *
64860844 CGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
*
64860893 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
64860932 GCTTCGGCTA
Statistics
Matches: 120, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
47 3 0.03
49 114 0.95
51 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:64860916 original size:98 final size:98
Alignment explanation
Indices: 64860747--64860937 Score: 355
Period size: 98 Copynumber: 1.9 Consensus size: 98
64860737 GAGGTCACGT
64860747 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
*
64860812 AGGCTACTATGCGTACCTGATAACTTCGATCAC
66 AGGCTACTATGCGTACCAGATAACTTCGATCAC
*
64860845 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGC
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
*
64860910 AGGCTACTATGCGTACCAGATAGCTTCG
66 AGGCTACTATGCGTACCAGATAACTTCG
64860938 GCTACAAGTG
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (98 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGC
AGGCTACTATGCGTACCAGATAACTTCGATCAC
Found at i:64863027 original size:25 final size:26
Alignment explanation
Indices: 64862978--64863028 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
64862968 AACATTCCTA
*
64862978 TATATAAAATTTTAATAAATGAAATT
1 TATATAAAATTTTAAAAAATGAAATT
64863004 TATAT-AAATTATTAAAAAAT-AAATT
1 TATATAAAATT-TTAAAAAATGAAATT
64863029 AAAAATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (26 bp):
TATATAAAATTTTAAAAAATGAAATT
Found at i:64873502 original size:22 final size:21
Alignment explanation
Indices: 64873456--64873502 Score: 51
Period size: 22 Copynumber: 2.1 Consensus size: 21
64873446 TTCACTACTG
*
64873456 AAATCCATAACCAAAACATACC
1 AAATCAATAACCAAAACATA-C
64873478 AAATCAATATACCAAAATCAT-C
1 AAATCAATA-ACCAAAA-CATAC
64873500 AAA
1 AAA
64873503 CTTACATAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 12 0.55
23 7 0.32
24 3 0.14
ACGTcount: A:0.57, C:0.26, G:0.00, T:0.17
Consensus pattern (21 bp):
AAATCAATAACCAAAACATAC
Found at i:64874338 original size:43 final size:43
Alignment explanation
Indices: 64874282--64874364 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
64874272 CTTACATGTT
* * * * *
64874282 ATCACATATCGATGCCACTGTCCTAGACAGGGTCTTACACGAA
1 ATCAAATAACGATGCCAATGTCCCAAACAGGGTCTTACACGAA
* *
64874325 ATCAAATAACGATGCTAATGTCCCAAACATGGTCTTACAC
1 ATCAAATAACGATGCCAATGTCCCAAACAGGGTCTTACAC
64874365 ATAATCTCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (43 bp):
ATCAAATAACGATGCCAATGTCCCAAACAGGGTCTTACACGAA
Found at i:64885496 original size:40 final size:40
Alignment explanation
Indices: 64885304--64885488 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
64885294 TCGAATGATG
* * * * *
64885304 TCCGGGCTAAGTCCCGAA-GCCTTTGCGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
64885344 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64885384 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
64885424 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64885465 -CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTT
64885489 AAACGAGTAG
Statistics
Matches: 129, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.91
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64885496 original size:80 final size:79
Alignment explanation
Indices: 64885357--64885512 Score: 192
Period size: 80 Copynumber: 2.0 Consensus size: 79
64885347 GGACTAAGAT
***
64885357 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTAAACGAG-TAGCT
64885421 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* * *
64885437 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTAAACGAGTAGC
1 CCGAAGGCATTCGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTAAACGAGTAGC
*
64885500 TATATCCGGTTAA
64 TAAATCCGGTTAA
64885513 ATTTTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
79 9 0.14
80 55 0.83
81 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTAAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:64890921 original size:11 final size:11
Alignment explanation
Indices: 64890905--64890932 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
64890895 GAAAGGGAAC
64890905 AAAAAAAAAGA
1 AAAAAAAAAGA
64890916 AAAAAAAAAGA
1 AAAAAAAAAGA
64890927 AAAAAA
1 AAAAAA
64890933 TGGTCTCATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:64892218 original size:29 final size:28
Alignment explanation
Indices: 64892186--64892288 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
64892176 GGGACGAGAT
* *
64892186 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
64892215 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
64892244 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
64892273 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64892289 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Done.