Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 219 of 335
Found at i:65658988 original size:18 final size:18
Alignment explanation
Indices: 65658965--65659002 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
65658955 AGGAGGAGCA
*
65658965 TGATGGACACCTGCGGAT
1 TGATGGACACCTGCAGAT
65658983 TGATGGACACCTGCAGAT
1 TGATGGACACCTGCAGAT
65659001 TG
1 TG
65659003 TTCTTCAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (18 bp):
TGATGGACACCTGCAGAT
Found at i:65662276 original size:35 final size:36
Alignment explanation
Indices: 65662230--65662306 Score: 138
Period size: 35 Copynumber: 2.2 Consensus size: 36
65662220 TGCCGCCGAT
65662230 TCTCTTTCTTCTTTCTATAGTGGTCTCCCTCTTT-A
1 TCTCTTTCTTCTTTCTATAGTGGTCTCCCTCTTTAA
*
65662265 TCTCTTTCTTCTTTCTATAGTGGTCTCCCTTTTTAA
1 TCTCTTTCTTCTTTCTATAGTGGTCTCCCTCTTTAA
65662301 TCTCTT
1 TCTCTT
65662307 CTTTGTATCG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
35 33 0.82
36 7 0.17
ACGTcount: A:0.09, C:0.27, G:0.08, T:0.56
Consensus pattern (36 bp):
TCTCTTTCTTCTTTCTATAGTGGTCTCCCTCTTTAA
Found at i:65668018 original size:47 final size:48
Alignment explanation
Indices: 65667911--65668038 Score: 145
Period size: 47 Copynumber: 2.7 Consensus size: 48
65667901 GTGGGTAAGG
* * * *
65667911 TGTCGATGCCATGTCCCAGACATAGTCTTACACTGGCTTACGTCTCGA
1 TGTCGATGCCATGTCCCAGACATAGTCTTACACTAGATTACATCTCAA
* * *
65667959 GGCCGATG-CATGTCCTAGACAT-GTCTTACACTAGATCT-CATCTCAA
1 TGTCGATGCCATGTCCCAGACATAGTCTTACACTAGAT-TACATCTCAA
* *
65668005 TGTCGATGCCATGTCCCAAACATGGTCTTACACT
1 TGTCGATGCCATGTCCCAGACATAGTCTTACACT
65668039 GGCTCACTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
46 24 0.36
47 26 0.39
48 16 0.24
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
TGTCGATGCCATGTCCCAGACATAGTCTTACACTAGATTACATCTCAA
Found at i:65669757 original size:29 final size:27
Alignment explanation
Indices: 65669723--65669825 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
65669713 TACTCAATCA
*
65669723 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
65669752 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
65669781 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
65669810 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
65669826 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:65689904 original size:62 final size:64
Alignment explanation
Indices: 65689787--65689906 Score: 172
Period size: 63 Copynumber: 1.9 Consensus size: 64
65689777 ATAAATGGTC
* *
65689787 AAATGGAGAAATAGGAAACATTTGGGAATGATTATGGCTATCTCCAAAATGAAAATGAAAATGA
1 AAATGGAGAAATAGGAAACATTTGGAAATGAATATGGCTATCTCCAAAATGAAAATGAAAATGA
* * * *
65689851 AAATGGAGAAAT-GGAATCATTTGGAAATGAATGTGGTTTTCT-CAAAATGAAAATGA
1 AAATGGAGAAATAGGAAACATTTGGAAATGAATATGGCTATCTCCAAAATGAAAATGA
65689907 CTTGAAAATA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
62 14 0.28
63 24 0.48
64 12 0.24
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.26
Consensus pattern (64 bp):
AAATGGAGAAATAGGAAACATTTGGAAATGAATATGGCTATCTCCAAAATGAAAATGAAAATGA
Found at i:65702893 original size:42 final size:42
Alignment explanation
Indices: 65702834--65702922 Score: 178
Period size: 42 Copynumber: 2.1 Consensus size: 42
65702824 ACAGTCTTCA
65702834 CCAAGACAGCTGGAAGGCATAGAGTCAAGACAAAAAGGAAAG
1 CCAAGACAGCTGGAAGGCATAGAGTCAAGACAAAAAGGAAAG
65702876 CCAAGACAGCTGGAAGGCATAGAGTCAAGACAAAAAGGAAAG
1 CCAAGACAGCTGGAAGGCATAGAGTCAAGACAAAAAGGAAAG
65702918 CCAAG
1 CCAAG
65702923 CCAGGAATGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.47, C:0.18, G:0.28, T:0.07
Consensus pattern (42 bp):
CCAAGACAGCTGGAAGGCATAGAGTCAAGACAAAAAGGAAAG
Found at i:65702904 original size:24 final size:24
Alignment explanation
Indices: 65702835--65702907 Score: 77
Period size: 24 Copynumber: 3.3 Consensus size: 24
65702825 CAGTCTTCAC
65702835 CAAGACAGCTGGAAGGCATAGAGT
1 CAAGACAGCTGGAAGGCATAGAGT
** *
65702859 CAAGACA---AAAAGG-A-A-AGC
1 CAAGACAGCTGGAAGGCATAGAGT
65702877 CAAGACAGCTGGAAGGCATAGAGT
1 CAAGACAGCTGGAAGGCATAGAGT
65702901 CAAGACA
1 CAAGACA
65702908 AAAAGGAAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
18 9 0.24
19 1 0.03
20 1 0.03
21 8 0.22
22 1 0.03
23 1 0.03
24 16 0.43
ACGTcount: A:0.45, C:0.18, G:0.29, T:0.08
Consensus pattern (24 bp):
CAAGACAGCTGGAAGGCATAGAGT
Found at i:65714264 original size:15 final size:17
Alignment explanation
Indices: 65714234--65714265 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
65714224 GTCAAAATCT
65714234 TTTTATGCAGTTATATA
1 TTTTATGCAGTTATATA
65714251 TTTTATG-A-TTATATA
1 TTTTATGCAGTTATATA
65714266 AATGAAACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.31, C:0.03, G:0.09, T:0.56
Consensus pattern (17 bp):
TTTTATGCAGTTATATA
Found at i:65714919 original size:18 final size:18
Alignment explanation
Indices: 65714892--65714934 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
65714882 CGCATAAAAA
* *
65714892 GAAAGCAAATAAATAAAC
1 GAAAGAAAATAAACAAAC
*
65714910 GAAAGAAAATAAACAAAT
1 GAAAGAAAATAAACAAAC
65714928 GAAAGAA
1 GAAAGAA
65714935 GGGGAAAGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.07, G:0.14, T:0.09
Consensus pattern (18 bp):
GAAAGAAAATAAACAAAC
Found at i:65731142 original size:40 final size:41
Alignment explanation
Indices: 65731060--65731208 Score: 141
Period size: 40 Copynumber: 3.7 Consensus size: 41
65731050 TGAATGATAC
* * *
65731060 CCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-TAT
1 CCGGGCTAAGA-CCCGAAGGCAATTGTGCTGAGACA-TACTAT
* * *
65731100 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC-AT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCT-GAGACATACTAT
*
65731140 CCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTGAGACATACTAT
*
65731180 CCGGGCTAAGACCCGAAGGCATTTGTGCT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCT
65731209 CATGGTTATA
Statistics
Matches: 90, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
38 3 0.03
39 5 0.06
40 77 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (41 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTGAGACATACTAT
Found at i:65731221 original size:40 final size:39
Alignment explanation
Indices: 65731094--65731223 Score: 145
Period size: 40 Copynumber: 3.3 Consensus size: 39
65731084 ATGCTGGAAA
* *
65731094 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-TGG
* * * * *
65731134 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTATG--G
*
65731174 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCTCATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-ATGG
65731214 TTATATCCGG
1 TTATATCCGG
65731224 TTATATTCCG
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTATGG
Found at i:65737224 original size:40 final size:40
Alignment explanation
Indices: 65737106--65737217 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
65737096 CTAAGATCCG
* * *
65737106 TACTAATTCCGGGCTAAG-CCCGAAGGCCTTGGTGCGAGT
1 TACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
* * *
65737145 TACTAAATCCGAGTTAAGTCCCGAAGGTATTTGTGCGAGT
1 TACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
*
65737185 TACTATAA-CCGGGCTATGTCCCGAAGGCATTTG
1 TACTA-AATCCGGGCTAAGTCCCGAAGGCATTTG
65737218 AACGAGTAGC
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
39 15 0.25
40 44 0.72
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
Found at i:65740531 original size:46 final size:46
Alignment explanation
Indices: 65740467--65740554 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
65740457 AATATATATG
* * *
65740467 TATATATAACCGAAGCTATTTTGATCACGTACACTAAGTGCAAATA
1 TATATATAACCGAAGCTATCTCGATCACGCACACTAAGTGCAAATA
* **
65740513 TATATATAGCCGAAGCTATCTCGATTTCGCACACTAAGTGCA
1 TATATATAACCGAAGCTATCTCGATCACGCACACTAAGTGCA
65740555 CATAATTAGC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (46 bp):
TATATATAACCGAAGCTATCTCGATCACGCACACTAAGTGCAAATA
Found at i:65746715 original size:20 final size:21
Alignment explanation
Indices: 65746690--65746729 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
65746680 CTCTTGAAAC
*
65746690 AGGGC-ACACGCCGGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
65746710 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
65746730 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.42, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:65748111 original size:94 final size:94
Alignment explanation
Indices: 65747993--65748164 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 94
65747983 AAGCTGACGC
* * *
65747993 CATGTCCCAGACAGGTCTTGCACTAGCTTGTA-TAT-TGCGAGGCCGATGCATGTCCCAGACATG
1 CATGTCCCAGACAGGTCTTACACTAGCTT-AACTATCT-CGAGGCCGATGCATGTCCAAGACATG
65748056 TCTTACACTAGCTCTTGTCTCAATGTCAATA
64 TCTTACACTAGCTCTTGTCTCAATGTCAATA
* * * *
65748087 CATGTCCTAGACATGTCTTACACTAGCTTAACTATCTTGAGGCTGATGCATGTCCAAGACATGTC
1 CATGTCCCAGACAGGTCTTACACTAGCTTAACTATCTCGAGGCCGATGCATGTCCAAGACATGTC
*
65748152 TTACACTGGCTCT
66 TTACACTAGCTCT
65748165 CATGCTTTGG
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
93 1 0.01
94 66 0.97
95 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (94 bp):
CATGTCCCAGACAGGTCTTACACTAGCTTAACTATCTCGAGGCCGATGCATGTCCAAGACATGTC
TTACACTAGCTCTTGTCTCAATGTCAATA
Found at i:65750389 original size:40 final size:40
Alignment explanation
Indices: 65750336--65750474 Score: 167
Period size: 40 Copynumber: 3.5 Consensus size: 40
65750326 GGATATAACG
* *
65750336 ACTCGCTCAAATGCCTTCGGGAC-AAACCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCCGGTT-TAGTA
* *
65750376 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCCGGTTTAGTA
* *
65750416 ACTCGCACAAATGCCTTC-GGCCTTAA-CCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCCGG-TTTAGTA
* *
65750455 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
65750475 ATCTTAGTCC
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
38 4 0.05
39 29 0.34
40 44 0.51
41 9 0.10
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCCGGTTTAGTA
Found at i:65752741 original size:20 final size:20
Alignment explanation
Indices: 65752703--65752739 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
65752693 GAGAGACTTT
*
65752703 TATTTTCTAAGAATTAAATA
1 TATTTTCTAAGAATAAAATA
65752723 TATTTTCT-AGAATAAAA
1 TATTTTCTAAGAATAAAA
65752740 ATTCTGTCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.43
Consensus pattern (20 bp):
TATTTTCTAAGAATAAAATA
Found at i:65753507 original size:20 final size:18
Alignment explanation
Indices: 65753460--65753508 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
65753450 GTAGATAAAC
65753460 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
65753477 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
65753497 ATTAAATTAATA
1 ATTAAATTAATA
65753509 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:65763263 original size:5 final size:5
Alignment explanation
Indices: 65763253--65763343 Score: 143
Period size: 5 Copynumber: 18.4 Consensus size: 5
65763243 TATTTAAGAA
65763253 TATAT TATAT TATAT TATAT T-TAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
65763302 TATAT TATAT TATAT TAGT-T TATAT TATAT TAGT-T TATAT TA
1 TATAT TATAT TATAT TA-TAT TATAT TATAT TA-TAT TATAT TA
65763344 GTTTAATAAT
Statistics
Matches: 81, Mismatches: 0, Indels: 10
0.89 0.00 0.11
Matches are distributed among these distances:
4 6 0.07
5 73 0.90
6 2 0.02
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:65770314 original size:34 final size:34
Alignment explanation
Indices: 65770241--65770324 Score: 116
Period size: 34 Copynumber: 2.5 Consensus size: 34
65770231 AATGCAGTCT
* *
65770241 AGGCCTAAGCCCATTTCAGTTTCAGTAACGATTC
1 AGGCCTTAGCCCATCTCAGTTTCAGTAACGATTC
* *
65770275 GGGCCTTAGCCCATCTCAGTTTCAGTAGC-AGTTC
1 AGGCCTTAGCCCATCTCAGTTTCAGTAACGA-TTC
65770309 AGGCCTTAGCCCATCT
1 AGGCCTTAGCCCATCT
65770325 TAATTTCTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
33 1 0.02
34 43 0.98
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.29
Consensus pattern (34 bp):
AGGCCTTAGCCCATCTCAGTTTCAGTAACGATTC
Found at i:65771667 original size:30 final size:31
Alignment explanation
Indices: 65771598--65771677 Score: 110
Period size: 30 Copynumber: 2.6 Consensus size: 31
65771588 TCTCAACATG
65771598 TACTGGGCC-ATAGCCCTTTTCATATTTCATAA
1 TACTGGGCCGA-AG-CCTTTTCATATTTCATAA
* *
65771630 CACTGGGCCGAAGCCTTTTCATATTTCA-AT
1 TACTGGGCCGAAGCCTTTTCATATTTCATAA
65771660 TACTGGGCCGAAGCCTTT
1 TACTGGGCCGAAGCCTTT
65771678 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
30 18 0.41
31 15 0.34
32 10 0.23
33 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (31 bp):
TACTGGGCCGAAGCCTTTTCATATTTCATAA
Found at i:65771922 original size:24 final size:24
Alignment explanation
Indices: 65771871--65772014 Score: 177
Period size: 23 Copynumber: 6.0 Consensus size: 24
65771861 GCTTTATCAT
*
65771871 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
65771896 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
65771920 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
65771943 ATAACTAGGGCAGAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
65771966 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
* *
65771991 ATAATTGGGGCATAAGCCTTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
65772015 CACTTCCTCC
Statistics
Matches: 105, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
23 42 0.40
24 30 0.29
25 33 0.31
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:65772088 original size:20 final size:20
Alignment explanation
Indices: 65772063--65772129 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
65772053 TTCTGATTAC
65772063 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
65772083 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
65772103 TTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
65772123 ACCATGT
1 ATCATGT
65772130 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:65772094 original size:11 final size:11
Alignment explanation
Indices: 65772063--65772118 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
65772053 TTCTGATTAC
65772063 ATCATGTGCAT
1 ATCATGTGCAT
*
65772074 ATCA--TACAT
1 ATCATGTGCAT
65772083 ATCATGTGCAT
1 ATCATGTGCAT
*
65772094 ATCA--TACAT
1 ATCATGTGCAT
*
65772103 TTCATGTGCAT
1 ATCATGTGCAT
65772114 ATCAT
1 ATCAT
65772119 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:65779743 original size:31 final size:31
Alignment explanation
Indices: 65779692--65779771 Score: 117
Period size: 31 Copynumber: 2.5 Consensus size: 31
65779682 CTCAACATGT
65779692 ACTGGGCC-ATAGCCCTTTTCATATTTCATAAC
1 ACTGGGCCGA-AG-CCTTTTCATATTTCATAAC
**
65779724 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATAAC
65779755 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
65779772 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
31 34 0.76
32 10 0.22
33 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATAAC
Found at i:65782778 original size:20 final size:18
Alignment explanation
Indices: 65782737--65782782 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
65782727 ATAAACCCAG
*
65782737 AAAA-AAAATTAAAAACC
1 AAAATAAAATAAAAAACC
65782754 AAAATAAAATAAAAAACAC
1 AAAATAAAATAAAAAAC-C
65782773 ACAAATAAAA
1 A-AAATAAAA
65782783 GATCCAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 4 0.16
18 11 0.44
19 2 0.08
20 8 0.32
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (18 bp):
AAAATAAAATAAAAAACC
Found at i:65782919 original size:27 final size:27
Alignment explanation
Indices: 65782875--65782927 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
65782865 AATTAATAAA
* * *
65782875 CCTAGACCTAATTGCAATGGCCCAAAT
1 CCTAGACCCAACTACAATGGCCCAAAT
65782902 CCTAGACCCAACTACAATGGCCCAAA
1 CCTAGACCCAACTACAATGGCCCAAA
65782928 CTCGAGACCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.34, G:0.13, T:0.17
Consensus pattern (27 bp):
CCTAGACCCAACTACAATGGCCCAAAT
Found at i:65797233 original size:43 final size:45
Alignment explanation
Indices: 65797183--65797277 Score: 117
Period size: 43 Copynumber: 2.2 Consensus size: 45
65797173 AGCCACTAAC
* **
65797183 CTTATCTTTCT-AAGGTAGCAAGAGAA-CAGGTTGAAGATTG-AG-T
1 CTTATCTTCCTGAA-GTAGCAAG-GAAGCAGACTGAAGATTGAAGAT
65797226 CTTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
1 CTTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
65797271 CTTATCT
1 CTTATCT
65797278 CCCTAAGCAG
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
42 3 0.07
43 30 0.67
44 4 0.09
45 8 0.18
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (45 bp):
CTTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
Found at i:65797365 original size:176 final size:176
Alignment explanation
Indices: 65796914--65797376 Score: 660
Period size: 176 Copynumber: 2.6 Consensus size: 176
65796904 TGGTGAAGTC
** **
65796914 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAAGAGGCGAATCTTATCTCCATGTATTG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAGAGGCGAATCTTATCTCCATGTATCA
* *
65796979 GCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAT
66 GCAATGGAGCAGATTTTAGCCACTAGCCTTATCTTTCTGAGGTAGCAAGAGAACAGGTTGAAGAT
*
65797044 GGTGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGA
131 -GTGGTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAGATTGA
* * * * * *** *
65797091 AGGTCTTATTTCCCTAAGCAGTAGTGGAACA-AACCAAAGACGATAAATCTTATCTCCATGTACC
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAGA-GGCGAATCTTATCTCCATGTATC
* * *
65797155 AGCAATGGAGCAGATTTAAGCCACTAACCTTATCTTTCTAAGGTAGCAAGAGAACAGGTTGAAGA
65 AGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTTTCTGAGGTAGCAAGAGAACAGGTTGAAGA
65797220 T-TGAGTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAGATTGA
130 TGTG-GTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAGATTGA
*
65797267 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAGAGGCGAACCTTATCTCCATGTATCA
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAGAGGCGAATCTTATCTCCATGTATCA
* * * * *
65797332 GAAATGGAGTAGATTTTAGCCACTGGTCTTATCTTCCTGAGGTAG
66 GCAATGGAGCAGATTTTAGCCACTAGCCTTATCTTTCTGAGGTAG
65797377 TAAGGAAGCA
Statistics
Matches: 247, Mismatches: 36, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
175 2 0.01
176 132 0.53
177 113 0.46
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (176 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAGAGGCGAATCTTATCTCCATGTATCA
GCAATGGAGCAGATTTTAGCCACTAGCCTTATCTTTCTGAGGTAGCAAGAGAACAGGTTGAAGAT
GTGGTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAGATTGA
Found at i:65797383 original size:133 final size:133
Alignment explanation
Indices: 65797224--65797485 Score: 416
Period size: 133 Copynumber: 2.0 Consensus size: 133
65797214 TGAAGATTGA
*
65797224 GTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGT
1 GTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGT
* *
65797289 AGTGGAGCAGATCAAAAGAGGCGAACCTTATCTCCATGTATCAGAAATGGAGTAGATTTTAGCCA
66 AGTGGAGCAGATCAAAAGAGGCGAACCTTATCTCCATGTATCAGAAATGGAGCAGATTTAAGCCA
65797354 CTG
131 CTG
* * * *
65797357 GTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTAAAGGTTGAAGATCTTATCTCCCTAAGTAGT
1 GTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGT
* * ** *
65797422 AGTGGAGCAGATCGAAAGAGGCGAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTAAGCC
66 AGTGGAGCAGATCAAAAGAGGCGAACCTTATCTCCATGTATCAGAAATGGAGCAGATTTAAGCC
65797486 CAAGCCTTGT
Statistics
Matches: 117, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
133 117 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (133 bp):
GTCTTATCTTCCTGAAGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCAAAAGAGGCGAACCTTATCTCCATGTATCAGAAATGGAGCAGATTTAAGCCA
CTG
Found at i:65797538 original size:309 final size:309
Alignment explanation
Indices: 65797046--65797656 Score: 804
Period size: 309 Copynumber: 2.0 Consensus size: 309
65797036 TTGAAGATGG
* * *
65797046 TGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGGTCTTATTTCCCTAAGCA
1 TGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCA
*
65797111 GTAGTGGAACAAACCAAAGACGATAAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTAAGC
66 GTAGTGGAACAAACCAAAGACGACAAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTAAGC
** * *
65797176 CACTAACCTTATCTTTCTAAGGTAGCAAGAGAACAGGTTGAAGATTGAGTCTTATCTTCCTGAAG
131 CACTAACCTTATCTACCTAAGGTAGCAAGAGAACAGGTTCAAGATTGAGTCTTATATTCCTGAAG
* * *
65797241 TAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAA
196 TAGCAAGGAAGCAAACTGAAGATTGAAGATCTTATCTCCCTAAACAGTAGTGGAACAGATC-AAA
*
65797306 GA-GGCGAACCTTATCTCCATGTATCAGAAATGGAGTAGATTTTAGCCAC
260 GATGGCGAACCTTATCTCCATGTATCAGAAATGGAGCAGATTTTAGCCAC
* * *
65797355 TGGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTAAAGGTTGAAGATCTTATCTCCCTAAGTA
1 TGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCA
* * * * * ***
65797420 GTAGTGGAGCAGATCGAAAGA-GGCGAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTAAG
66 GTAGTGGAACA-AACCAAAGACGACAAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTAAG
* *
65797484 CC-C-AAGCCTTGTCTACCTGAA-GTGGCAATG-GAACAGGTTCAAGA-TGCAAGTCTTATATTC
130 CCACTAA-CCTTATCTACCT-AAGGTAGCAA-GAGAACAGGTTCAAGATTG--AGTCTTATATTC
* ** *
65797544 CTGAAGTAGCAAGGAAGCAAACTGAAGATTGAAGATCTTATTTTTCTAAACAGTTGTGGAACAGA
190 CTGAAGTAGCAAGGAAGCAAACTGAAGATTGAAGATCTTATCTCCCTAAACAGTAGTGGAACAGA
* * * * *
65797609 TCGAGGATGGCGAATCTTATCTCCATGTATCGGTAATGGAGCAGATTT
255 TCAAAGATGGCGAACCTTATCTCCATGTATCAGAAATGGAGCAGATTT
65797657 AGACCACCAG
Statistics
Matches: 261, Mismatches: 34, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
307 4 0.02
308 32 0.12
309 218 0.84
310 7 0.03
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (309 bp):
TGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAAGATCTTATCTCCCTAAGCA
GTAGTGGAACAAACCAAAGACGACAAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTAAGC
CACTAACCTTATCTACCTAAGGTAGCAAGAGAACAGGTTCAAGATTGAGTCTTATATTCCTGAAG
TAGCAAGGAAGCAAACTGAAGATTGAAGATCTTATCTCCCTAAACAGTAGTGGAACAGATCAAAG
ATGGCGAACCTTATCTCCATGTATCAGAAATGGAGCAGATTTTAGCCAC
Found at i:65797995 original size:27 final size:27
Alignment explanation
Indices: 65797948--65798015 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
65797938 CCAAATTAAT
* * *
65797948 AAACCTAGACCTAATTGCAATGGCCCA
1 AAACCTAGACCCAACTACAATGGCCCA
*
65797975 AATCCTAGACCCAACTACAATGGCCCA
1 AAACCTAGACCCAACTACAATGGCCCA
*
65798002 AAACCGAGACCCAA
1 AAACCTAGACCCAA
65798016 AGGAACCCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.40, C:0.34, G:0.13, T:0.13
Consensus pattern (27 bp):
AAACCTAGACCCAACTACAATGGCCCA
Found at i:65799843 original size:8 final size:8
Alignment explanation
Indices: 65799830--65799860 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
65799820 AATTATTCCA
65799830 AATTCATC
1 AATTCATC
65799838 AATTCATC
1 AATTCATC
65799846 AATTCATC
1 AATTCATC
65799854 AATTCAT
1 AATTCAT
65799861 ATATTGTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (8 bp):
AATTCATC
Found at i:65805899 original size:21 final size:21
Alignment explanation
Indices: 65805873--65805923 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
65805863 TATGGTCCAA
65805873 GGGACATGCCCGTATGACCCT
1 GGGACATGCCCGTATGACCCT
*
65805894 GGGACATGCCCGTGTGACCCT
1 GGGACATGCCCGTATGACCCT
65805915 GGGACATGC
1 GGGACATGC
65805924 TACAGGTCGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.18
Consensus pattern (21 bp):
GGGACATGCCCGTATGACCCT
Found at i:65810400 original size:39 final size:39
Alignment explanation
Indices: 65810343--65810502 Score: 257
Period size: 39 Copynumber: 4.1 Consensus size: 39
65810333 AAGCAAGACA
*
65810343 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
65810382 CTAGAAATGTATCCGGGCTAAAGTCCTGCAGTCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
65810421 CCGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
65810460 CTGGAAATGTATCCGGGCTAAAGTCCCACAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
65810499 CTGG
1 CTGG
65810503 TAACATAATT
Statistics
Matches: 110, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 110 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:65815673 original size:49 final size:49
Alignment explanation
Indices: 65815592--65815753 Score: 256
Period size: 49 Copynumber: 3.3 Consensus size: 49
65815582 CCCTTCGGGA
* * * * * *
65815592 CTTATCACAT-T-TATACACTTCCACATCCATCACGTTGGCCACTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
65815639 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
65815688 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
65815737 CTTATCACATATATACA
1 CTTATCACATATATACA
65815754 TCTCATACAT
Statistics
Matches: 107, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 10 0.09
48 1 0.01
49 96 0.90
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65821531 original size:16 final size:16
Alignment explanation
Indices: 65821497--65821536 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
65821487 AATAGATAAA
* *
65821497 TTATCTAATTAATTTT
1 TTATCTAATTAAATAT
*
65821513 TTATTTAATTAAATAT
1 TTATCTAATTAAATAT
65821529 TTATCTAA
1 TTATCTAA
65821537 ATTTTAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (16 bp):
TTATCTAATTAAATAT
Found at i:65823539 original size:24 final size:24
Alignment explanation
Indices: 65823510--65823556 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
65823500 TATATATACC
65823510 AATTCAATCA-ATA-TAAATTCAATA
1 AATTC-ATCACATACTAAA-TCAATA
65823534 AATTCATCACATACTAAATCAAT
1 AATTCATCACATACTAAATCAAT
65823557 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCATCACATACTAAATCAATA
Found at i:65827310 original size:2 final size:2
Alignment explanation
Indices: 65827303--65827329 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
65827293 TGCATGACAT
65827303 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
65827330 TCGGTGCTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:65828759 original size:3 final size:3
Alignment explanation
Indices: 65828751--65828810 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
65828741 AATTCAACTT
65828751 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
65828799 TAA TAA TAA TAA
1 TAA TAA TAA TAA
65828811 ATAAGATAGT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:65830118 original size:32 final size:31
Alignment explanation
Indices: 65830061--65830131 Score: 81
Period size: 30 Copynumber: 2.2 Consensus size: 31
65830051 CAATATCATT
65830061 AATTACAAAATCAAAATAAAATAAATTGATTAAA
1 AATTA-AAAATCAAAATAAAATAAA-T-ATTAAA
* *
65830095 AATTAAAAGTCAAAAT-GAATAAATATTAAA
1 AATTAAAAATCAAAATAAAATAAATATTAAA
*
65830125 AAATAAA
1 AATTAAA
65830132 TTTATGATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 12 0.35
31 1 0.03
32 6 0.18
33 10 0.29
34 5 0.15
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.25
Consensus pattern (31 bp):
AATTAAAAATCAAAATAAAATAAATATTAAA
Found at i:65832967 original size:54 final size:54
Alignment explanation
Indices: 65832855--65832985 Score: 138
Period size: 54 Copynumber: 2.4 Consensus size: 54
65832845 GTAACTTACT
* ** * *
65832855 GACTTGACTCACACAGCCGTGTCGTAAGCTATGTGCTAGCCAGTGAAACCCACT
1 GACTTGGCTCACATGGCCGTGTCGTAAGCCATGTGCTAGCCAGTGAAACCCACG
* * ** * *
65832909 GACTTGGCTCACATGGCCGTGTCGTAGGCCGTGTGCTAGCTTGTGCAACTCACG
1 GACTTGGCTCACATGGCCGTGTCGTAAGCCATGTGCTAGCCAGTGAAACCCACG
*
65832963 GACTTGAG-ACACATGGCCGTGTC
1 GACTTG-GCTCACATGGCCGTGTC
65832986 TCAACCCGTG
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 63 0.98
55 1 0.02
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (54 bp):
GACTTGGCTCACATGGCCGTGTCGTAAGCCATGTGCTAGCCAGTGAAACCCACG
Found at i:65834854 original size:42 final size:43
Alignment explanation
Indices: 65834795--65834896 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
65834785 ACATGGCTTG
* * * * *
65834795 GACACGCGCCCATGTCCTTACCCGTGTGGCTCAGACGGTCT-A
1 GACACACGCCTATGTCCTTACCCGTGTGACTCACACGGCCTGA
* * *
65834837 GACACACGCCTATGTCCTTGCTCGTGTGACTCACACGGCCTGG
1 GACACACGCCTATGTCCTTACCCGTGTGACTCACACGGCCTGA
65834880 GA-ACACGCCTATGTCCT
1 GACACACGCCTATGTCCT
65834897 CTGCTCGTGT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 49 0.96
43 2 0.04
ACGTcount: A:0.18, C:0.35, G:0.25, T:0.23
Consensus pattern (43 bp):
GACACACGCCTATGTCCTTACCCGTGTGACTCACACGGCCTGA
Found at i:65836843 original size:43 final size:43
Alignment explanation
Indices: 65836796--65836883 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
65836786 GAAGACCTCC
65836796 TAAGCTGTTTTTTCATATTTTTGCACCATGTGAGTTCAATTCT
1 TAAGCTGTTTTTTCATATTTTTGCACCATGTGAGTTCAATTCT
65836839 TAAGCTGTTTTTTCATATTTTTGCACCATGTGAGTTCAATTCT
1 TAAGCTGTTTTTTCATATTTTTGCACCATGTGAGTTCAATTCT
65836882 TA
1 TA
65836884 CTTTTTCTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.49
Consensus pattern (43 bp):
TAAGCTGTTTTTTCATATTTTTGCACCATGTGAGTTCAATTCT
Found at i:65840819 original size:21 final size:21
Alignment explanation
Indices: 65840795--65840838 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
65840785 CTCATGTTAG
*
65840795 TTTCATCTTCTTTC-CCTTTTC
1 TTTC-TCTTCTTTCTCATTTTC
*
65840816 TTTCTTTTCTTTCTCATTTTC
1 TTTCTCTTCTTTCTCATTTTC
65840837 TT
1 TT
65840839 GTTGTTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.05, C:0.27, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTCTCTTCTTTCTCATTTTC
Found at i:65847549 original size:112 final size:112
Alignment explanation
Indices: 65847352--65847555 Score: 354
Period size: 112 Copynumber: 1.8 Consensus size: 112
65847342 TTGGCTTCTC
* *
65847352 ATGGTTTCTTCTGGTTCCCATGTAGCTTCTTCTACACCGTGTCGATGCCATAAAACCTTTACCAA
1 ATGGTTTCTTCCGATTCCCATGTAGCTTCTTCTACACCGTGTCGATGCCATAAAACCTTTACCAA
65847417 AACCACATCTTTATTTCTCAACTATTTTATCTCGTGAGCTAAAATCA
66 AACCACATCTTTATTTCTCAACTATTTTATCTCGTGAGCTAAAATCA
* * *
65847464 ATGGTTTCTTCCGATTCCCATGTAGCTTTTTCTACACCGTGTTGATGTCATAAAACCTTTACCAA
1 ATGGTTTCTTCCGATTCCCATGTAGCTTCTTCTACACCGTGTCGATGCCATAAAACCTTTACCAA
*
65847529 AGCCACATCTTTATTTCTCAACTATTT
66 AACCACATCTTTATTTCTCAACTATTT
65847556 AATCCCACAA
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
112 86 1.00
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.38
Consensus pattern (112 bp):
ATGGTTTCTTCCGATTCCCATGTAGCTTCTTCTACACCGTGTCGATGCCATAAAACCTTTACCAA
AACCACATCTTTATTTCTCAACTATTTTATCTCGTGAGCTAAAATCA
Found at i:65852498 original size:14 final size:15
Alignment explanation
Indices: 65852479--65852508 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
65852469 GTTTATTATA
65852479 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
65852493 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
65852508 T
1 T
65852509 CTTAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:65854025 original size:24 final size:24
Alignment explanation
Indices: 65853995--65854046 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
65853985 CTAAGAGTTA
65853995 AATTAATATGGCAAAGAGAATGTT
1 AATTAATATGGCAAAGAGAATGTT
65854019 AATTAATATGGCAAAGAGAATGTT
1 AATTAATATGGCAAAGAGAATGTT
65854043 AATT
1 AATT
65854047 TTATTTAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.19, T:0.31
Consensus pattern (24 bp):
AATTAATATGGCAAAGAGAATGTT
Found at i:65854613 original size:41 final size:41
Alignment explanation
Indices: 65854411--65854613 Score: 103
Period size: 41 Copynumber: 4.9 Consensus size: 41
65854401 GTGATGAATT
**
65854411 TCGGGCTTTGAGCCTAGCAGGCATAAT-CCGGTGAA-ATGATA
1 TCGGGCTCAGAGCCTAGCAGGCATAATGCCGGTGAATAT--TA
* * * * * * *
65854452 TCGGACTTAAAGGTCTAGCAAGCTTTAA-GCTGGTGAATATTA
1 TCGGGCTCAGA-GCCTAGCAGGC-ATAATGCCGGTGAATATTA
* **
65854494 TCGGGCTCTGAGCCTAGCAGGCATAATGCCAATGAA-ATGATA
1 TCGGGCTCAGAGCCTAGCAGGCATAATGCCGGTGAATAT--TA
* * * * * *
65854536 TCGGACTTAAAGGTCC-AGCAAGCTTTAA-GCTGGTGAATATTA
1 TCGGGCTCAGA-G-CCTAGCAGGC-ATAATGCCGGTGAATATTA
* *
65854578 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAA
1 TCGGGCTCAGAGCCTAGCAGGCATAATGCCGGTGAA
65854614 ATGATATCGG
Statistics
Matches: 116, Mismatches: 33, Indels: 26
0.66 0.19 0.15
Matches are distributed among these distances:
40 10 0.09
41 38 0.33
42 36 0.31
43 23 0.20
44 9 0.08
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (41 bp):
TCGGGCTCAGAGCCTAGCAGGCATAATGCCGGTGAATATTA
Found at i:65854622 original size:42 final size:42
Alignment explanation
Indices: 65854411--65854628 Score: 139
Period size: 42 Copynumber: 5.2 Consensus size: 42
65854401 GTGATGAATT
*
65854411 TCGGGCTTTGAGCCTAGCAGGCATAAT-CCGGTGAAATGATA
1 TCGGGCTTAGAGCCTAGCAGGCATAATGCCGGTGAAATGATA
* * * * * *
65854452 TCGGACTTAAAGGTCTAGCAAGCTTTAA-GCTGGTG-AAT-ATTA
1 TCGGGCTTAGA-GCCTAGCAGGC-ATAATGCCGGTGAAATGA-TA
**
65854494 TCGGGCTCT-GAGCCTAGCAGGCATAATGCCAATGAAATGATA
1 TCGGGCT-TAGAGCCTAGCAGGCATAATGCCGGTGAAATGATA
* * * * *
65854536 TCGGACTTAAAGGTCC-AGCAAGCTTTAA-GCTGGTG-AAT-ATTA
1 TCGGGCTTAGA-G-CCTAGCAGGC-ATAATGCCGGTGAAATGA-TA
** *
65854578 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATA
1 TCGGGCTTAGAGCCTAGCAGGCATAATGCCGGTGAAATGATA
*
65854620 TCGGACTTA
1 TCGGGCTTA
65854629 AAGGTCTTGC
Statistics
Matches: 128, Mismatches: 32, Indels: 33
0.66 0.17 0.17
Matches are distributed among these distances:
40 8 0.06
41 37 0.29
42 56 0.44
43 22 0.17
44 5 0.04
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (42 bp):
TCGGGCTTAGAGCCTAGCAGGCATAATGCCGGTGAAATGATA
Found at i:65854655 original size:84 final size:84
Alignment explanation
Indices: 65854411--65854644 Score: 389
Period size: 84 Copynumber: 2.8 Consensus size: 84
65854401 GTGATGAATT
*
65854411 TCGGGCTTTGAGCCTAGCAGGCATAAT-CCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
1 TCGGGCTCTGAGCCTAGCAGGCATAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
65854475 TTTAAGCTGGTGAATATTA
66 TTTAAGCTGGTGAATATTA
** *
65854494 TCGGGCTCTGAGCCTAGCAGGCATAATGCCAATGAAATGATATCGGACTTAAAGGTCCAGCAAGC
1 TCGGGCTCTGAGCCTAGCAGGCATAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
65854559 TTTAAGCTGGTGAATATTA
66 TTTAAGCTGGTGAATATTA
* * * *
65854578 TCGGGCTCCGAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTTGCAGGC
1 TCGGGCTCTGAGCCTAGCAGGCATAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
65854643 TT
66 TT
65854645 ATTGCTGGTG
Statistics
Matches: 139, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
83 26 0.19
84 113 0.81
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (84 bp):
TCGGGCTCTGAGCCTAGCAGGCATAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGC
TTTAAGCTGGTGAATATTA
Found at i:65864034 original size:67 final size:67
Alignment explanation
Indices: 65863948--65864146 Score: 362
Period size: 67 Copynumber: 3.0 Consensus size: 67
65863938 AGTGACTAAT
*
65863948 AAGGAGGGATTTAAAGGCAATTAGACCCAAATTTTATGGGCTAGACGGTTTGGGCAAGAAAATCA
1 AAGGAGGGATTTAAAGGCAATTAGACCCAAATTTTATGGGCTGGACGGTTTGGGCAAGAAAATCA
65864013 GC
66 GC
*
65864015 AATGAGGGATTTAAAGGCAATTAGACCCAAATTTTATGGGCTGGACGGTTTGGGCAAGAAAATCA
1 AAGGAGGGATTTAAAGGCAATTAGACCCAAATTTTATGGGCTGGACGGTTTGGGCAAGAAAATCA
65864080 GC
66 GC
* *
65864082 AAGGAGGGATTTAAAGGAAATTAGACCCAAATTATATGGGCTGGACGGTTTGGGCAAGAAAATCA
1 AAGGAGGGATTTAAAGGCAATTAGACCCAAATTTTATGGGCTGGACGGTTTGGGCAAGAAAATCA
65864147 ACAAAAGAGA
Statistics
Matches: 127, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 127 1.00
ACGTcount: A:0.36, C:0.13, G:0.29, T:0.23
Consensus pattern (67 bp):
AAGGAGGGATTTAAAGGCAATTAGACCCAAATTTTATGGGCTGGACGGTTTGGGCAAGAAAATCA
GC
Found at i:65865171 original size:47 final size:47
Alignment explanation
Indices: 65865091--65865217 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
65865081 GATATGTGAT
** * * * * *
65865091 TTCCGTATAAGACCATAGCTGGGCTATGTCATCGGTGCGATATGAGC
1 TTCCGTATAAGACCATATTTGGGATATGGCATCGGTACAATATGACC
* * *
65865138 TTCCGTATAAGACCATATTTGCGATATGGCATCGGTATAATATGTCC
1 TTCCGTATAAGACCATATTTGGGATATGGCATCGGTACAATATGACC
* *
65865185 TTCTGTGTAAGACCATATTTGGGATATGGCATC
1 TTCCGTATAAGACCATATTTGGGATATGGCATC
65865218 AGTATGATAT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (47 bp):
TTCCGTATAAGACCATATTTGGGATATGGCATCGGTACAATATGACC
Found at i:65867223 original size:11 final size:10
Alignment explanation
Indices: 65867207--65867247 Score: 55
Period size: 11 Copynumber: 3.8 Consensus size: 10
65867197 AAACTTAACC
65867207 AAATAAAATAA
1 AAATAAAA-AA
65867218 AAATAAAAATA
1 AAATAAAAA-A
65867229 AAATAAAAAA
1 AAATAAAAAA
65867239 TAAATAAAA
1 -AAATAAAA
65867248 CTAATACTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 2 0.07
11 26 0.93
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (10 bp):
AAATAAAAAA
Found at i:65867227 original size:17 final size:16
Alignment explanation
Indices: 65867207--65867247 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 16
65867197 AAACTTAACC
65867207 AAATAAAATAAAAATAA
1 AAATAAAATAAAAA-AA
*
65867224 AAATAAAATAAAAAAT
1 AAATAAAATAAAAAAA
65867240 AAATAAAA
1 AAATAAAA
65867248 CTAATACTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (16 bp):
AAATAAAATAAAAAAA
Found at i:65879589 original size:21 final size:21
Alignment explanation
Indices: 65879563--65879616 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
65879553 GGGGTTGCAT
65879563 ACGGGCGTGTGGGTAAGTGAC
1 ACGGGCGTGTGGGTAAGTGAC
*
65879584 ATGGGCGTGTGGGTAAGTGAC
1 ACGGGCGTGTGGGTAAGTGAC
*
65879605 ACAGGCGTGTGG
1 ACGGGCGTGTGG
65879617 AAACTAGAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.19, C:0.13, G:0.48, T:0.20
Consensus pattern (21 bp):
ACGGGCGTGTGGGTAAGTGAC
Found at i:65884283 original size:18 final size:18
Alignment explanation
Indices: 65884260--65884300 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
65884250 TATGATTCAG
65884260 TTTTATATGAATGTTTAT
1 TTTTATATGAATGTTTAT
65884278 TTTTATATGAATGTTTAT
1 TTTTATATGAATGTTTAT
*
65884296 GTTTA
1 TTTTA
65884301 AGTCTGGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (18 bp):
TTTTATATGAATGTTTAT
Found at i:65886790 original size:16 final size:16
Alignment explanation
Indices: 65886769--65886823 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
65886759 TTAAAAATTG
*
65886769 ATTTTTTTATATTTTT
1 ATTTTTTCATATTTTT
*
65886785 ATTTTTTGA-ATTTTT
1 ATTTTTTCATATTTTT
65886800 A-TTTTTCATAATTTTTT
1 ATTTTTTCAT-A-TTTTT
65886817 ATTTTTT
1 ATTTTTT
65886824 AAAAATTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 6 0.18
15 7 0.21
16 9 0.27
17 6 0.18
18 5 0.15
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (16 bp):
ATTTTTTCATATTTTT
Found at i:65886791 original size:15 final size:15
Alignment explanation
Indices: 65886771--65886824 Score: 65
Period size: 15 Copynumber: 3.5 Consensus size: 15
65886761 AAAAATTGAT
65886771 TTTTTTATATTTTTA
1 TTTTTTATATTTTTA
65886786 TTTTTTGA-ATTTTTA
1 TTTTTT-ATATTTTTA
*
65886801 TTTTTCATAATTTTTTA
1 TTTTTTAT-A-TTTTTA
65886818 TTTTTTA
1 TTTTTTA
65886825 AAAATTATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 1 0.03
15 18 0.55
16 2 0.06
17 12 0.36
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (15 bp):
TTTTTTATATTTTTA
Found at i:65899358 original size:21 final size:21
Alignment explanation
Indices: 65899329--65899369 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
65899319 TGCTGGACAG
*
65899329 GAGCCGGAATGGGAGTGTTTA
1 GAGCCGGAATGAGAGTGTTTA
*
65899350 GAGCTGGAATGAGAGTGTTT
1 GAGCCGGAATGAGAGTGTTT
65899370 GGTTGCTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.41, T:0.27
Consensus pattern (21 bp):
GAGCCGGAATGAGAGTGTTTA
Found at i:65913572 original size:17 final size:16
Alignment explanation
Indices: 65913544--65913577 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
65913534 CCTATTATTG
*
65913544 TAATAAAAATTTGATA
1 TAATAAAAATTTAATA
65913560 TAATAATAAATTTAATA
1 TAATAA-AAATTTAATA
65913577 T
1 T
65913578 TGAAAATTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (16 bp):
TAATAAAAATTTAATA
Found at i:65926168 original size:59 final size:59
Alignment explanation
Indices: 65926076--65926193 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
65926066 ACGACATCTC
65926076 GAACTTTGAGACTGAGCTTGCCTTTTATTTAAAATTAATGTATTTTAACTTCTTTTAAA
1 GAACTTTGAGACTGAGCTTGCCTTTTATTTAAAATTAATGTATTTTAACTTCTTTTAAA
65926135 GAACTTTGAGACTGAGCTTGCCTTTTATTTAAAATTAATGTATTTTAACTTCTTTTAAA
1 GAACTTTGAGACTGAGCTTGCCTTTTATTTAAAATTAATGTATTTTAACTTCTTTTAAA
65926194 AGGATATTCG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46
Consensus pattern (59 bp):
GAACTTTGAGACTGAGCTTGCCTTTTATTTAAAATTAATGTATTTTAACTTCTTTTAAA
Found at i:65926914 original size:3 final size:3
Alignment explanation
Indices: 65926906--65926962 Score: 82
Period size: 3 Copynumber: 19.3 Consensus size: 3
65926896 ATATAGTAAA
65926906 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT CAAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
*
65926950 AAA AAT AAT AAT A
1 AAT AAT AAT AAT A
65926963 GTGATTTTAG
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
2 4 0.08
3 44 0.88
4 2 0.04
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:65927382 original size:2 final size:2
Alignment explanation
Indices: 65927375--65927495 Score: 87
Period size: 2 Copynumber: 64.0 Consensus size: 2
65927365 TACGTACATA
* * * *
65927375 AT AT AT AT AC AT A- AT AC AT -T AA AT AT AT AC AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * **
65927414 AA AT AT AT AT AT AT AT AT A- AT AT TT A- AA AA AT AT GC AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65927453 AT AT GAT AT -T A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65927494 AT
1 AT
65927496 GTAATATGGA
Statistics
Matches: 93, Mismatches: 17, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
1 8 0.09
2 83 0.89
3 2 0.02
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (2 bp):
AT
Found at i:65927392 original size:20 final size:19
Alignment explanation
Indices: 65927369--65927422 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 19
65927359 AAAACGTACG
65927369 TACATAATATATATACATAA
1 TACATAA-ATATATACATAA
65927389 TACATTAAATATATACATAA
1 TACA-TAAATATATACATAA
*
65927409 TATATAAATATATA
1 TACATAAATATATA
65927423 TATATATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 10 0.31
20 19 0.59
21 3 0.09
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (19 bp):
TACATAAATATATACATAA
Found at i:65928003 original size:59 final size:60
Alignment explanation
Indices: 65927927--65928055 Score: 206
Period size: 59 Copynumber: 2.1 Consensus size: 60
65927917 AAAACTTAAT
* *
65927927 CGCGAAGTCATGTGAAAGCGGAGGGGTCAAAAGCGCAAATAACCACTCCGCTT-AAAAACA
1 CGCGAA-TCCTGTGAAAGCGGAGGGGTCAAAAGAGCAAATAACCACTCCGCTTCAAAAACA
* *
65927987 CGCGGATCCTGTGAAAGCGGAGGGGTCAAAAGAGCAAATAACCCCTCCGCTTCAAAAACA
1 CGCGAATCCTGTGAAAGCGGAGGGGTCAAAAGAGCAAATAACCACTCCGCTTCAAAAACA
65928047 CGCGAATCC
1 CGCGAATCC
65928056 CACGCCGGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
59 43 0.68
60 20 0.32
ACGTcount: A:0.36, C:0.26, G:0.25, T:0.13
Consensus pattern (60 bp):
CGCGAATCCTGTGAAAGCGGAGGGGTCAAAAGAGCAAATAACCACTCCGCTTCAAAAACA
Found at i:65928311 original size:13 final size:12
Alignment explanation
Indices: 65928291--65928321 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
65928281 CGAAAGGTAT
65928291 TATTTTTTTGTA
1 TATTTTTTTGTA
65928303 TATTATTTTTGTA
1 TATT-TTTTTGTA
65928316 TATTTT
1 TATTTT
65928322 ATATATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.74
Consensus pattern (12 bp):
TATTTTTTTGTA
Found at i:65928326 original size:22 final size:24
Alignment explanation
Indices: 65928296--65928351 Score: 73
Period size: 22 Copynumber: 2.4 Consensus size: 24
65928286 GGTATTATTT
*
65928296 TTTTGTATATTAT-TTTTG-TATA
1 TTTTATATATTATATTTTGATATA
65928318 TTTTATATA-TATATTTTGATATA
1 TTTTATATATTATATTTTGATATA
65928341 TTTTAATATAT
1 TTTT-ATATAT
65928352 GAATGAGAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 3 0.10
22 13 0.45
23 8 0.28
24 5 0.17
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.64
Consensus pattern (24 bp):
TTTTATATATTATATTTTGATATA
Found at i:65929420 original size:43 final size:43
Alignment explanation
Indices: 65929363--65929463 Score: 141
Period size: 43 Copynumber: 2.4 Consensus size: 43
65929353 TCTGTTTCAA
* *
65929363 TACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCC
1 TACTGCTTAAGGGGTTAAGATCTGTAAATTCAGCCTGCTACCC
* * *
65929406 TACTGCTTAAGGGGTTAAGGTCTGTAAATTCGGCTTGCTACCC
1 TACTGCTTAAGGGGTTAAGATCTGTAAATTCAGCCTGCTACCC
*
65929449 TACTACTT-AGGGGTT
1 TACTGCTTAAGGGGTT
65929464 TAAGGCTTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 7 0.13
43 45 0.87
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.34
Consensus pattern (43 bp):
TACTGCTTAAGGGGTTAAGATCTGTAAATTCAGCCTGCTACCC
Found at i:65933946 original size:9 final size:10
Alignment explanation
Indices: 65933933--65933978 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 10
65933923 GGGAAAGTCT
65933933 AATGCAAAT-
1 AATGCAAATG
65933942 AATGC-AATG
1 AATGCAAATG
65933951 CAATGCAAATG
1 -AATGCAAATG
*
65933962 CATG-AAATG
1 AATGCAAATG
65933971 AATGCAAA
1 AATGCAAA
65933979 ATAAAGGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
8 3 0.10
9 13 0.42
10 11 0.35
11 4 0.13
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (10 bp):
AATGCAAATG
Found at i:65933957 original size:19 final size:19
Alignment explanation
Indices: 65933933--65933978 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
65933923 GGGAAAGTCT
*
65933933 AATGCAAAT-AATGCAATG
1 AATGCAAATGAATGAAATG
*
65933951 CAATGCAAATGCATGAAATG
1 -AATGCAAATGAATGAAATG
65933971 AATGCAAA
1 AATGCAAA
65933979 ATAAAGGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (19 bp):
AATGCAAATGAATGAAATG
Found at i:65936174 original size:3 final size:3
Alignment explanation
Indices: 65936166--65936217 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
65936156 TATAGTAAAA
65936166 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
65936214 AAT A
1 AAT A
65936218 GTGATATTAG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:65936641 original size:2 final size:2
Alignment explanation
Indices: 65936634--65936784 Score: 63
Period size: 2 Copynumber: 80.0 Consensus size: 2
65936624 TACGTACATA
* * * *
65936634 AT AT AT AT AC AT A- AT AC AT -T AA AT AT AT AC AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * **
65936673 A- AA AT AT AT AT AT AT A- AT AT TT A- AA AA AT AT GC AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* **
65936711 AT GAT AT -T A- AT AT AT AT AT AT AT AT AT AT AT GT A- AT AT GG
1 AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
65936751 AGC AT A- AT AC AT AT AT AT TT AT AT AT AT AT AT AT
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65936785 CAAAAGAATA
Statistics
Matches: 109, Mismatches: 27, Indels: 26
0.67 0.17 0.16
Matches are distributed among these distances:
1 11 0.10
2 95 0.87
3 3 0.03
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (2 bp):
AT
Found at i:65936658 original size:22 final size:21
Alignment explanation
Indices: 65936628--65936691 Score: 78
Period size: 20 Copynumber: 3.1 Consensus size: 21
65936618 GAAACGTACG
65936628 TACAT-AATATATATACATAA
1 TACATAAATATATATACATAA
*
65936648 TACATTAA-ATATATACATAA
1 TACATAAATATATATACATAA
* *
65936668 TATATAAAATATATATATATAA
1 TACAT-AAATATATATACATAA
65936690 TA
1 TA
65936692 TTTAAAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 21 0.55
21 4 0.11
22 13 0.34
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (21 bp):
TACATAAATATATATACATAA
Found at i:65936680 original size:42 final size:44
Alignment explanation
Indices: 65936633--65936728 Score: 117
Period size: 42 Copynumber: 2.2 Consensus size: 44
65936623 GTACGTACAT
*
65936633 AATATATATACATAATACATT-AAATATATACATAATAT-ATA-A
1 AATATATATACATAATA-ATTAAAAAATATACATAATATGATATA
* * * *
65936675 AATATATATATATAATATTTAAAAAATATGCATAATATGATATT
1 AATATATATACATAATAATTAAAAAATATACATAATATGATATA
65936719 AATATATATA
1 AATATATATA
65936729 TATATATATA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 2 0.04
42 31 0.67
43 3 0.07
44 10 0.22
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (44 bp):
AATATATATACATAATAATTAAAAAATATACATAATATGATATA
Found at i:65937534 original size:22 final size:23
Alignment explanation
Indices: 65937517--65937559 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
65937507 TTTATATTCT
65937517 TTTTG-TATATTTTATATATATA
1 TTTTGATATATTTTATATATATA
65937539 TTTTGATATATTTTA-ATATAT
1 TTTTGATATATTTTATATATAT
65937560 GAATGAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (23 bp):
TTTTGATATATTTTATATATATA
Found at i:65945095 original size:20 final size:20
Alignment explanation
Indices: 65945067--65945123 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 20
65945057 AATAGCAGTG
* * *
65945067 AAAATAAAAGTAAT-ATAGT
1 AAAAAAAAAATAATAATAGC
65945086 AAAAAAAAAATAATAATAGC
1 AAAAAAAAAATAATAATAGC
*
65945106 -AATAAAAAATAATAATAG
1 AAAAAAAAAATAATAATAG
65945124 TGATATTAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 29 0.88
20 4 0.12
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (20 bp):
AAAAAAAAAATAATAATAGC
Found at i:65945217 original size:15 final size:16
Alignment explanation
Indices: 65945199--65945242 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
65945189 ATAAGGAAAA
65945199 TAATAATAATAAT-TG
1 TAATAATAATAATATG
*
65945214 TAATGATAATAATGATG
1 TAATAATAATAAT-ATG
65945231 TAAATAATAATA
1 T-AATAATAATA
65945243 TTAGAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 12 0.50
17 3 0.12
18 9 0.38
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (16 bp):
TAATAATAATAATATG
Found at i:65945222 original size:18 final size:15
Alignment explanation
Indices: 65945200--65945242 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 15
65945190 TAAGGAAAAT
65945200 AATAATAATAATTGTA
1 AATAATAATAA-TGTA
*
65945216 ATGATAATAATGATGTA
1 A--ATAATAATAATGTA
65945233 AATAATAATA
1 AATAATAATA
65945243 TTAGAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
15 8 0.35
16 1 0.04
17 5 0.22
18 9 0.39
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (15 bp):
AATAATAATAATGTA
Found at i:65945545 original size:2 final size:2
Alignment explanation
Indices: 65945538--65945598 Score: 51
Period size: 2 Copynumber: 33.0 Consensus size: 2
65945528 TACATACATA
* * * *
65945538 AT AT AT AT AC AT A- AT AC AT -T AA AT AT AT AC AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65945577 A- AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
65945599 TTAAAAAATA
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
1 5 0.11
2 41 0.89
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:65945549 original size:13 final size:13
Alignment explanation
Indices: 65945531--65945598 Score: 53
Period size: 13 Copynumber: 5.8 Consensus size: 13
65945521 TGAAACGTAC
65945531 ATACATAATATAT
1 ATACATAATATAT
*
65945544 ATACAT-A-ATAC
1 ATACATAATATAT
65945555 AT---TAA-ATAT
1 ATACATAATATAT
65945564 ATACATAATATAT
1 ATACATAATATAT
*
65945577 A-ATAT-ATATAT
1 ATACATAATATAT
*
65945588 ATATATAATAT
1 ATACATAATAT
65945599 TTAAAAAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 14
0.73 0.05 0.23
Matches are distributed among these distances:
8 1 0.02
9 6 0.13
11 12 0.27
12 11 0.24
13 15 0.33
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (13 bp):
ATACATAATATAT
Found at i:65945562 original size:22 final size:20
Alignment explanation
Indices: 65945531--65945586 Score: 87
Period size: 20 Copynumber: 2.8 Consensus size: 20
65945521 TGAAACGTAC
65945531 ATACATAATATATATACATA
1 ATACATAATATATATACATA
65945551 ATACATTAA-ATATATACATA
1 ATACA-TAATATATATACATA
*
65945571 ATATATAATATATATA
1 ATACATAATATATATA
65945587 TATATATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 3 0.09
20 27 0.82
21 3 0.09
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (20 bp):
ATACATAATATATATACATA
Found at i:65945596 original size:44 final size:46
Alignment explanation
Indices: 65945538--65945639 Score: 129
Period size: 44 Copynumber: 2.3 Consensus size: 46
65945528 TACATACATA
* *
65945538 ATATATATACATAATACATT-AAATATATACATAATAT-ATAAT-AT
1 ATATATATATATAATA-ATTAAAAAATATACATAATATGATAATAAT
* * *
65945582 ATATATATATATAATATTTAAAAAATATGCATAATATGATATTAAT
1 ATATATATATATAATAATTAAAAAATATACATAATATGATAATAAT
65945628 ATATATATATAT
1 ATATATATATAT
65945640 GTAATATGGA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
43 2 0.04
44 30 0.60
45 4 0.08
46 14 0.28
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (46 bp):
ATATATATATATAATAATTAAAAAATATACATAATATGATAATAAT
Found at i:65945667 original size:37 final size:37
Alignment explanation
Indices: 65945575--65945668 Score: 100
Period size: 40 Copynumber: 2.5 Consensus size: 37
65945565 TACATAATAT
* *
65945575 ATAATATATATATATATATAATATTTAAAAAATATGC
1 ATAATATATATATATATATAATATGTAAAAAAGATGC
* **
65945612 ATAATATGATATTAATATATATATATATGTAATATGGA-GC
1 ATAATAT-ATA-T-ATATATATA-ATATGTAAAAAAGATGC
65945652 ATAATATATATATATAT
1 ATAATATATATATATAT
65945669 TAAAAGAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
37 13 0.27
38 4 0.08
39 4 0.08
40 18 0.38
41 9 0.19
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.41
Consensus pattern (37 bp):
ATAATATATATATATATATAATATGTAAAAAAGATGC
Found at i:65946410 original size:13 final size:13
Alignment explanation
Indices: 65946392--65946416 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65946382 TATTATTTTT
65946392 TTTTTGTATATTC
1 TTTTTGTATATTC
65946405 TTTTTGTATATT
1 TTTTTGTATATT
65946417 TTATATATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.08, T:0.72
Consensus pattern (13 bp):
TTTTTGTATATTC
Found at i:65946418 original size:22 final size:23
Alignment explanation
Indices: 65946405--65946448 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
65946395 TTGTATATTC
65946405 TTTTTG-TATATTTTATATATAT
1 TTTTTGATATATTTTATATATAT
65946427 TTTTTGATATATTTTA-ATATAT
1 TTTTTGATATATTTTATATATAT
65946449 GAATGAGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (23 bp):
TTTTTGATATATTTTATATATAT
Found at i:65946425 original size:24 final size:23
Alignment explanation
Indices: 65946398--65946448 Score: 70
Period size: 22 Copynumber: 2.2 Consensus size: 23
65946388 TTTTTTTTTG
65946398 TATATTCTTTTTG-TATATTTT-A
1 TATATT-TTTTTGATATATTTTAA
65946420 TATATATTTTTTGATATATTTTAA
1 TATAT-TTTTTTGATATATTTTAA
65946444 TATAT
1 TATAT
65946449 GAATGAGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 11 0.42
23 9 0.35
24 6 0.23
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (23 bp):
TATATTTTTTTGATATATTTTAA
Found at i:65946448 original size:12 final size:11
Alignment explanation
Indices: 65946411--65946448 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
65946401 ATTCTTTTTG
65946411 TATATTTTATA
1 TATATTTTATA
*
65946422 TATATTTTTTGA
1 TATATTTTAT-A
65946434 TATATTTTA-A
1 TATATTTTATA
65946444 TATAT
1 TATAT
65946449 GAATGAGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 6 0.25
11 9 0.38
12 9 0.38
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (11 bp):
TATATTTTATA
Found at i:65949349 original size:13 final size:13
Alignment explanation
Indices: 65949331--65949356 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65949321 ATCCTGAATA
65949331 AACTTAAACATAT
1 AACTTAAACATAT
65949344 AACTTAAACATAT
1 AACTTAAACATAT
65949357 GATTGTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
AACTTAAACATAT
Found at i:65949406 original size:9 final size:9
Alignment explanation
Indices: 65949388--65949461 Score: 51
Period size: 10 Copynumber: 7.7 Consensus size: 9
65949378 AGTGATTTCT
65949388 TAAAAATTA
1 TAAAAATTA
*
65949397 TAAAATTTA
1 TAAAAATTA
65949406 TTTAAAAATTA
1 --TAAAAATTA
65949417 TAAAAAATTA
1 T-AAAAATTA
*
65949427 TAAATGATTA
1 TAAA-AATTA
**
65949437 TTAATTATT-
1 -TAAAAATTA
65949446 TAAAAATTAA
1 TAAAAATT-A
65949456 TAAAAA
1 TAAAAA
65949462 ATATTATTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
8 6 0.12
9 12 0.24
10 22 0.43
11 11 0.22
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.39
Consensus pattern (9 bp):
TAAAAATTA
Found at i:65949758 original size:11 final size:10
Alignment explanation
Indices: 65949667--65949758 Score: 59
Period size: 10 Copynumber: 9.4 Consensus size: 10
65949657 ATATGTGTAT
65949667 ATAATTTTT-
1 ATAATTTTTA
*
65949676 ATAAATTTTA
1 ATAATTTTTA
65949686 ATAA--TTTA
1 ATAATTTTTA
* *
65949694 A-ATTTTATTT
1 ATAATTT-TTA
* *
65949704 AGAATTCTTA
1 ATAATTTTTA
*
65949714 ATCAATTTTAA
1 AT-AATTTTTA
*
65949725 ATAATTTTTT
1 ATAATTTTTA
65949735 ATAATTTTT-
1 ATAATTTTTA
65949744 ATAATTATTTA
1 ATAATT-TTTA
65949755 ATAA
1 ATAA
65949759 ATCAATCTTG
Statistics
Matches: 64, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
7 1 0.02
8 5 0.08
9 15 0.23
10 28 0.44
11 15 0.23
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.55
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:65949861 original size:11 final size:10
Alignment explanation
Indices: 65949837--65949882 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
65949827 TCAATGTTAT
65949837 TTTTAATAAA
1 TTTTAATAAA
*
65949847 TTTAAATAAA
1 TTTTAATAAA
65949857 TTTT-ATAAA
1 TTTTAATAAA
*
65949866 TTCTTAATAAT
1 TT-TTAATAAA
65949877 TTTTAA
1 TTTTAA
65949883 ATAATTTTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
9 7 0.23
10 18 0.58
11 6 0.19
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (10 bp):
TTTTAATAAA
Found at i:65949866 original size:19 final size:19
Alignment explanation
Indices: 65949837--65949884 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
65949827 TCAATGTTAT
65949837 TTTTAATAAATT-TAAATAAA
1 TTTT-ATAAATTCTAAAT-AA
*
65949857 TTTTATAAATTCTTAATAA
1 TTTTATAAATTCTAAATAA
65949876 TTTT-TAAAT
1 TTTTATAAAT
65949885 AATTTTCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 5 0.19
19 13 0.50
20 8 0.31
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TTTTATAAATTCTAAATAA
Found at i:65952203 original size:19 final size:19
Alignment explanation
Indices: 65952179--65952318 Score: 79
Period size: 21 Copynumber: 6.9 Consensus size: 19
65952169 AATTATTTAT
65952179 TAAATT-TAATTAGAATATA
1 TAAATTATAATTA-AATATA
* *
65952198 TAAATTATATTTAAATATT
1 TAAATTATAATTAAATATA
* *
65952217 TAAATATAACAATTAAATATT
1 TAAAT-T-ATAATTAAATATA
* * *
65952238 TGTAATTAGATATTGAATATTTA
1 T-AAATTATA-ATT-AA-ATATA
65952261 TTAAATT-TAATTAGAATATA
1 -TAAATTATAATTA-AATATA
* *
65952281 TAAACTAT-ATTAAATATT
1 TAAATTATAATTAAATATA
65952299 TAAATATAATAATTAAATAT
1 TAAAT-T-ATAATTAAATAT
65952319 TTGTAATTAA
Statistics
Matches: 94, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
18 9 0.10
19 26 0.28
20 16 0.17
21 29 0.31
22 6 0.06
23 7 0.07
24 1 0.01
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (19 bp):
TAAATTATAATTAAATATA
Found at i:65952208 original size:29 final size:29
Alignment explanation
Indices: 65952176--65952295 Score: 96
Period size: 27 Copynumber: 4.3 Consensus size: 29
65952166 ATTAATTATT
65952176 TATTAAATTTAATTAGAATATATAAATTA
1 TATTAAATTTAATTAGAATATATAAATTA
*
65952205 TATTTAAA--TATTTA-AATATA-ACAATTA
1 TA-TTAAATTTAATTAGAATATATA-AATTA
* *
65952232 -AAT-ATTTGTAATTAG-ATAT-TGAATATT-
1 TATTAAATT-TAATTAGAATATAT-AA-ATTA
*
65952259 TATTAAATTTAATTAGAATATATAAACTA
1 TATTAAATTTAATTAGAATATATAAATTA
65952288 TATTAAAT
1 TATTAAAT
65952296 ATTTAAATAT
Statistics
Matches: 70, Mismatches: 7, Indels: 28
0.67 0.07 0.27
Matches are distributed among these distances:
24 1 0.01
25 1 0.01
26 2 0.03
27 21 0.30
28 20 0.29
29 19 0.27
30 6 0.09
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (29 bp):
TATTAAATTTAATTAGAATATATAAATTA
Found at i:65952313 original size:82 final size:82
Alignment explanation
Indices: 65952157--65952333 Score: 295
Period size: 82 Copynumber: 2.1 Consensus size: 82
65952147 ACATTTCTAA
*
65952157 GTAATTAATATTAATTATTTATTAAATTTAATTAGAATATATAAATTATATTTAAATATTTAAAT
1 GTAATTAATATTAATTATTTATTAAATTTAATTAGAATATATAAACTATATTTAAATATTTAAAT
65952222 ATAACAATTAAATATTT
66 ATAACAATTAAATATTT
65952239 GTAATTAGATATTGAA-TATTTATTAAATTTAATTAGAATATATAAACTATA-TTAAATATTTAA
1 GTAATTA-ATATT-AATTATTTATTAAATTTAATTAGAATATATAAACTATATTTAAATATTTAA
*
65952302 ATATAATAATTAAATATTT
64 ATATAACAATTAAATATTT
65952321 GTAATTAAATATT
1 GTAATT-AATATT
65952334 TGGAAGAATA
Statistics
Matches: 90, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
82 48 0.53
83 40 0.44
84 2 0.02
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (82 bp):
GTAATTAATATTAATTATTTATTAAATTTAATTAGAATATATAAACTATATTTAAATATTTAAAT
ATAACAATTAAATATTT
Found at i:65952327 original size:14 final size:14
Alignment explanation
Indices: 65952308--65952335 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
65952298 TTAAATATAA
65952308 TAATTAAATATTTG
1 TAATTAAATATTTG
65952322 TAATTAAATATTTG
1 TAATTAAATATTTG
65952336 GAAGAATAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TAATTAAATATTTG
Found at i:65953050 original size:23 final size:23
Alignment explanation
Indices: 65953004--65953059 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 23
65952994 AAAGGGTTTG
65953004 ATTTTATTATTTGATAGGTTTAAT
1 ATTTTATTATTTGATA-GTTTAAT
65953028 -TTTTATTATTTGATA-TTAATAAT
1 ATTTTATTATTTGATAGTT--TAAT
65953051 ATTTT-TTAT
1 ATTTTATTAT
65953060 AAATTGAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
21 2 0.07
23 23 0.79
24 4 0.14
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (23 bp):
ATTTTATTATTTGATAGTTTAAT
Found at i:65954067 original size:43 final size:43
Alignment explanation
Indices: 65954006--65954092 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
65953996 GTTCCGAGCT
65954006 AGTGAGAAGTCTTTGTTTAAAAGCTAACTAAATAAAAACTCTA
1 AGTGAGAAGTCTTTGTTTAAAAGCTAACTAAATAAAAACTCTA
65954049 AGTGAGAAGTCTTTGTTTAAAAGCTAACTAAATAAAAACTCTA
1 AGTGAGAAGTCTTTGTTTAAAAGCTAACTAAATAAAAACTCTA
65954092 A
1 A
65954093 CTCTTTGTGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (43 bp):
AGTGAGAAGTCTTTGTTTAAAAGCTAACTAAATAAAAACTCTA
Found at i:65963841 original size:16 final size:15
Alignment explanation
Indices: 65963816--65963845 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
65963806 AAAATAATTC
65963816 TTCATGAATAAAATG
1 TTCATGAATAAAATG
65963831 TTCATTGAATAAAAT
1 TTCA-TGAATAAAAT
65963846 ATTTATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.37
Consensus pattern (15 bp):
TTCATGAATAAAATG
Found at i:65964824 original size:20 final size:18
Alignment explanation
Indices: 65964774--65964825 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 18
65964764 CAATGAATAA
65964774 GTTCACCAATAGATACAATT
1 GTTCA-CAA-AGATACAATT
65964794 GTTCA-AAAGATACAATT
1 GTTCACAAAGATACAATT
65964811 GTTCATCAAGAGATA
1 GTTCA-CAA-AGATA
65964826 GAACTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
17 15 0.52
18 2 0.07
19 2 0.07
20 10 0.34
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.29
Consensus pattern (18 bp):
GTTCACAAAGATACAATT
Found at i:65972424 original size:20 final size:20
Alignment explanation
Indices: 65972401--65972439 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
65972391 AAATAATAAA
65972401 ATTT-AATTAGTTATAAAATT
1 ATTTCAATTA-TTATAAAATT
*
65972421 ATTTCAATTATTATTAAAT
1 ATTTCAATTATTATAAAAT
65972440 AAAATTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (20 bp):
ATTTCAATTATTATAAAATT
Found at i:65972897 original size:26 final size:26
Alignment explanation
Indices: 65972861--65972912 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
65972851 ACTTATAAAT
65972861 ATTATAAAAATAT-GAAAATCTAATAA
1 ATTATAAAAATATAGAAAAT-TAATAA
*
65972887 ATTATAAAAATATATAAAATTAATAA
1 ATTATAAAAATATAGAAAATTAATAA
65972913 GTCTTATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (26 bp):
ATTATAAAAATATAGAAAATTAATAA
Found at i:65972903 original size:17 final size:17
Alignment explanation
Indices: 65972815--65972904 Score: 51
Period size: 18 Copynumber: 5.2 Consensus size: 17
65972805 AATATAAAAA
*
65972815 AAATCATAAAAA-AT-T
1 AAATTATAAAAATATAT
* *
65972830 AAAATATTAAAATTGATAT
1 AAATTA-TAAAAAT-ATAT
*
65972849 AAACTTATAAATAT-TAT
1 AAA-TTATAAAAATATAT
* * *
65972866 AAAAATATGAAAATCTAAT
1 -AAATTATAAAAATAT-AT
65972885 AAATTATAAAAATATAT
1 AAATTATAAAAATATAT
65972902 AAA
1 AAA
65972905 ATTAATAAGT
Statistics
Matches: 55, Mismatches: 12, Indels: 14
0.68 0.15 0.17
Matches are distributed among these distances:
15 4 0.07
16 5 0.09
17 15 0.27
18 18 0.33
19 11 0.20
20 2 0.04
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.32
Consensus pattern (17 bp):
AAATTATAAAAATATAT
Found at i:65972906 original size:9 final size:9
Alignment explanation
Indices: 65972803--65972906 Score: 58
Period size: 8 Copynumber: 11.6 Consensus size: 9
65972793 TTTTCTCATA
*
65972803 AAAATATAA
1 AAAATATAT
*
65972812 AAAAAATCAT
1 AAAATAT-AT
*
65972822 AAAAAAT-T
1 AAAATATAT
65972830 AAAATAT-T
1 AAAATATAT
65972838 AAAATTGATAT
1 AAAA-T-ATAT
*
65972849 AAACT-TAT
1 AAAATATAT
65972857 -AAATATTAT
1 AAAATA-TAT
65972866 AAAA-ATAT
1 AAAATATAT
*
65972874 GAAAATCTAAT
1 -AAAATAT-AT
*
65972885 AAATTATA-
1 AAAATATAT
65972893 AAAATATAT
1 AAAATATAT
65972902 AAAAT
1 AAAAT
65972907 TAATAAGTCT
Statistics
Matches: 75, Mismatches: 9, Indels: 22
0.71 0.08 0.21
Matches are distributed among these distances:
7 3 0.04
8 25 0.33
9 21 0.28
10 20 0.27
11 6 0.08
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (9 bp):
AAAATATAT
Found at i:65973305 original size:17 final size:17
Alignment explanation
Indices: 65973283--65973316 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
65973273 GTTCAATTAA
* *
65973283 ATAAAATATTAAAAAAT
1 ATAAAACATAAAAAAAT
65973300 ATAAAACATAAAAAAAT
1 ATAAAACATAAAAAAAT
65973317 GTATTAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (17 bp):
ATAAAACATAAAAAAAT
Found at i:65978257 original size:6 final size:6
Alignment explanation
Indices: 65978246--65978297 Score: 54
Period size: 6 Copynumber: 8.8 Consensus size: 6
65978236 AGAAATTGAG
* **
65978246 AAAGAA AAAGAA ATCA-AA AAAGAA ATTGAA AAAG-A AAAGAA AAAGAA
1 AAAGAA AAAGAA A-AAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
65978293 AAAGA
1 AAAGA
65978298 GAAACAAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
5 6 0.16
6 30 0.81
7 1 0.03
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:65978285 original size:17 final size:17
Alignment explanation
Indices: 65978246--65978297 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
65978236 AGAAATTGAG
65978246 AAAGAAAAAGAAATCAA-A
1 AAAGAAAAAGAAA--AAGA
**
65978264 AAAGAAATTGAAAAAGA
1 AAAGAAAAAGAAAAAGA
65978281 AAAGAAAAAGAAAAAGA
1 AAAGAAAAAGAAAAAGA
65978298 GAAACAAAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 2 0.07
17 16 0.55
18 11 0.38
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (17 bp):
AAAGAAAAAGAAAAAGA
Found at i:65978288 original size:24 final size:23
Alignment explanation
Indices: 65978249--65978293 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
65978239 AATTGAGAAA
*
65978249 GAAAAAGAAATCAAAAAAGAAATT
1 GAAAAAGAAAAC-AAAAAGAAATT
*
65978273 GAAAAAGAAAAGAAAAAGAAA
1 GAAAAAGAAAACAAAAAGAAA
65978294 AAGAGAAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.07
Consensus pattern (23 bp):
GAAAAAGAAAACAAAAAGAAATT
Found at i:65978295 original size:30 final size:30
Alignment explanation
Indices: 65978233--65978297 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
65978223 AATGAATTTT
* *
65978233 AAAAGAAATTGAGAAAGAAAAAGAAATCAA
1 AAAAGAAATTGAAAAAGAAAAAGAAAACAA
65978263 AAAAGAAATTGAAAAAG-AAAAGAAAA-AGA
1 AAAAGAAATTGAAAAAGAAAAAGAAAACA-A
65978292 AAAAGA
1 AAAAGA
65978298 GAAACAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
28 1 0.03
29 15 0.47
30 16 0.50
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.08
Consensus pattern (30 bp):
AAAAGAAATTGAAAAAGAAAAAGAAAACAA
Found at i:65982978 original size:10 final size:9
Alignment explanation
Indices: 65982956--65983154 Score: 62
Period size: 9 Copynumber: 20.4 Consensus size: 9
65982946 TTTATAATTT
65982956 TTTTTATAA
1 TTTTTATAA
65982965 TTTTTATAA
1 TTTTTATAA
**
65982974 GTTTTCGTCAA
1 -TTTTTAT-AA
*
65982985 TTTTTATAC
1 TTTTTATAA
* *
65982994 TTTTAATACT
1 TTTTTATA-A
*
65983004 TTTTTATGA
1 TTTTTATAA
65983013 TTTTTATAGAA
1 TTTTTAT--AA
** **
65983024 TTTCAATTTG
1 TTTTTA-TAA
65983034 TTTTTAATAAA
1 TTTTT-AT-AA
* *
65983045 ATTTTAAATA
1 TTTTTATA-A
65983055 TATTTTATTAA
1 T-TTTTA-TAA
**
65983066 TTTTATATTT
1 TTTT-TATAA
65983076 TTTTTATAA
1 TTTTTATAA
*
65983085 TTTATTA-GA
1 TTT-TTATAA
65983094 TTTTTAT-A
1 TTTTTATAA
65983102 TTTTTATAA
1 TTTTTATAA
*
65983111 TATTTAGTAA
1 TTTTTA-TAA
*
65983121 TATTTT-TAT
1 T-TTTTATAA
65983130 TTATTTATAA
1 TT-TTTATAA
65983140 TTTTATATCAA
1 TTTT-TAT-AA
65983151 TTTT
1 TTTT
65983155 CACTTTTTAA
Statistics
Matches: 137, Mismatches: 32, Indels: 40
0.66 0.15 0.19
Matches are distributed among these distances:
8 12 0.09
9 49 0.36
10 44 0.32
11 30 0.22
12 2 0.01
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (9 bp):
TTTTTATAA
Found at i:65983075 original size:27 final size:29
Alignment explanation
Indices: 65983045--65983105 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 29
65983035 TTTTAATAAA
*
65983045 ATTTTAAATATATTTTATTA-A-TTTTAT
1 ATTTTAAATATAATTTATTAGATTTTTAT
***
65983072 ATTTTTTTTATAATTTATTAGATTTTTAT
1 ATTTTAAATATAATTTATTAGATTTTTAT
65983101 ATTTT
1 ATTTT
65983106 TATAATATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 16 0.57
28 1 0.04
29 11 0.39
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (29 bp):
ATTTTAAATATAATTTATTAGATTTTTAT
Found at i:65983125 original size:29 final size:28
Alignment explanation
Indices: 65983066--65983146 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 28
65983056 ATTTTATTAA
* * *
65983066 TTTTATATTTTTTTTATAATTTATTAGAT
1 TTTTATATTTTTATAAT-ATTTATAAGAT
*
65983095 TTTTATATTTTTATAATATTTAGTAATAT
1 TTTTATATTTTTATAATATTTA-TAAGAT
65983124 TTTTAT-TTATTTATAAT-TTTATA
1 TTTTATATT-TTTATAATATTTATA
65983147 TCAATTTTCA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.04
28 11 0.24
29 33 0.72
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (28 bp):
TTTTATATTTTTATAATATTTATAAGAT
Found at i:65988908 original size:21 final size:20
Alignment explanation
Indices: 65988861--65988908 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
65988851 TGAAAATTTT
*
65988861 ATATTATGTAAAAAATTAAA
1 ATATTATGTAAAAAAATAAA
65988881 ATGATTAT-TAAATACAAATAAA
1 AT-ATTATGTAAA-A-AAATAAA
65988903 ATATTA
1 ATATTA
65988909 AAAATTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 6 0.25
21 10 0.42
22 8 0.33
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (20 bp):
ATATTATGTAAAAAAATAAA
Found at i:65988927 original size:18 final size:18
Alignment explanation
Indices: 65988906--65988941 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
65988896 AAATAAAATA
65988906 TTAAAAATTAAAAACTTT
1 TTAAAAATTAAAAACTTT
65988924 TTAAAAATTAAAAACTTT
1 TTAAAAATTAAAAACTTT
65988942 CGTTTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (18 bp):
TTAAAAATTAAAAACTTT
Found at i:65989264 original size:37 final size:37
Alignment explanation
Indices: 65989214--65989288 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
65989204 GAGATAAGTA
65989214 TATTTTACATCAAATCTCAAGAAAATAGTCTTTTACG
1 TATTTTACATCAAATCTCAAGAAAATAGTCTTTTACG
*
65989251 TATTTTACATCAAATCTCAAGATAATAGTCTTTTACG
1 TATTTTACATCAAATCTCAAGAAAATAGTCTTTTACG
65989288 T
1 T
65989289 TTGTTTTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (37 bp):
TATTTTACATCAAATCTCAAGAAAATAGTCTTTTACG
Found at i:65990539 original size:3 final size:3
Alignment explanation
Indices: 65990531--65990574 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
65990521 GTTTGTTTTC
65990531 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
65990575 AATTTCATCC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:65991284 original size:6 final size:6
Alignment explanation
Indices: 65991273--65991321 Score: 80
Period size: 6 Copynumber: 7.8 Consensus size: 6
65991263 AAAAAAAATT
65991273 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTACAA TTTAAA CTTTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA-AA TTTAAA -TTTAA
65991322 TTTTTTATAT
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
6 30 0.73
7 11 0.27
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (6 bp):
TTTAAA
Found at i:65992154 original size:13 final size:14
Alignment explanation
Indices: 65992132--65992174 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 14
65992122 TGTCCATTTT
*
65992132 AGATATAGATA-AC
1 AGATACAGATATAC
*
65992145 AGATACAGATATGC
1 AGATACAGATATAC
65992159 AGA-ACAGATATAC
1 AGATACAGATATAC
65992172 AGA
1 AGA
65992175 ATCCTACCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 22 0.85
14 4 0.15
ACGTcount: A:0.51, C:0.12, G:0.19, T:0.19
Consensus pattern (14 bp):
AGATACAGATATAC
Found at i:65993242 original size:156 final size:156
Alignment explanation
Indices: 65992943--65993242 Score: 415
Period size: 156 Copynumber: 1.9 Consensus size: 156
65992933 AGCCCTTTAG
* * *
65992943 AACCCTAACATCCCGAACAATTTTGGACTATGATTCTGCAAGAGGAGAGTCACAATCTTCTCGAT
1 AACCCCAACATCCCGAACAATTTTGGACTACGATTCTGCAAGAGGAGAGTCACAATCTTCTCAAT
* * *
65993008 TCGTTGCAAACGAATAAATACAACGATAAAAAATATCACAATAAGGAAGCACAATTTTGTTAAAA
66 TCGCTGCAAACGAATAAACACAACGATAAAAAATATCACAATAAAGAAGCACAATTTTGTTAAAA
*
65993073 TGAGGAAGAAAAAAAGAACACTCCAA
131 CGAGGAAGAAAAAAAGAACACTCCAA
* * * * * *
65993099 AACCCCAACA-CCCTGAACGATTTTGGACTACGGTTCTGTAATAGGAGAGTTACAATCTTCTTAA
1 AACCCCAACATCCC-GAACAATTTTGGACTACGATTCTGCAAGAGGAGAGTCACAATCTTCTCAA
* * *
65993163 TTCGCTGCAAATGAATAAACACAACGATACAAAATA-CTGCAATAAAGAAGCACAATTTTGTTTA
65 TTCGCTGCAAACGAATAAACACAACGATAAAAAATATC-ACAATAAAGAAGCACAATTTTG-TTA
65993227 AAACGAGGAAGAAAAA
128 AAACGAGGAAGAAAAA
65993243 TATAAAAAAT
Statistics
Matches: 125, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
155 4 0.03
156 103 0.82
157 18 0.14
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.23
Consensus pattern (156 bp):
AACCCCAACATCCCGAACAATTTTGGACTACGATTCTGCAAGAGGAGAGTCACAATCTTCTCAAT
TCGCTGCAAACGAATAAACACAACGATAAAAAATATCACAATAAAGAAGCACAATTTTGTTAAAA
CGAGGAAGAAAAAAAGAACACTCCAA
Done.