Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 22 of 335
Found at i:8302416 original size:20 final size:18
Alignment explanation
Indices: 8302391--8302427 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
8302381 ATTGCTAAGT
8302391 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
8302411 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
8302428 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:8307958 original size:3 final size:3
Alignment explanation
Indices: 8307950--8307978 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8307940 AAAGTCCTGA
8307950 TGG TGG TGG TGG TGG TGG TGG TGG TGG TG
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TG
8307979 AGGTCGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.66, T:0.34
Consensus pattern (3 bp):
TGG
Found at i:8329455 original size:3 final size:3
Alignment explanation
Indices: 8329447--8329484 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8329437 AACAGATGAA
8329447 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8329485 GGAAGGAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8331465 original size:16 final size:15
Alignment explanation
Indices: 8331433--8331463 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8331423 GTAATCTCAT
*
8331433 ATTTTTATTGTTAAA
1 ATTTTTATTATTAAA
8331448 ATTTTTATTATTAAA
1 ATTTTTATTATTAAA
8331463 A
1 A
8331464 ATAGATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
ATTTTTATTATTAAA
Found at i:8332950 original size:23 final size:23
Alignment explanation
Indices: 8332924--8332968 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
8332914 TGTCACGATG
* *
8332924 AGGAGATATGTGATGTTGCGACA
1 AGGAGATATGTGACGTCGCGACA
8332947 AGGAGATATGTGACGTCGCGAC
1 AGGAGATATGTGACGTCGCGAC
8332969 GATATCTCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.29, C:0.13, G:0.36, T:0.22
Consensus pattern (23 bp):
AGGAGATATGTGACGTCGCGACA
Found at i:8339721 original size:21 final size:21
Alignment explanation
Indices: 8339696--8339761 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
8339686 ATGATAATTC
*
8339696 TCTGTTTAGCTCTTACGAGCT
1 TCTGTTCAGCTCTTACGAGCT
* * *
8339717 TCTGTTCAACTCTTATGAGTT
1 TCTGTTCAGCTCTTACGAGCT
*
8339738 TTTGTTCAGCTCTTACGAGCT
1 TCTGTTCAGCTCTTACGAGCT
8339759 TCT
1 TCT
8339762 TTTTGCTCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (21 bp):
TCTGTTCAGCTCTTACGAGCT
Found at i:8341564 original size:8 final size:8
Alignment explanation
Indices: 8341551--8341580 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
8341541 TTATTAAGTA
*
8341551 AATTTTAC
1 AATTTTCC
8341559 AATTTTCC
1 AATTTTCC
8341567 AATTTTCC
1 AATTTTCC
8341575 AATTTT
1 AATTTT
8341581 GCCCTTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.30, C:0.17, G:0.00, T:0.53
Consensus pattern (8 bp):
AATTTTCC
Found at i:8345190 original size:35 final size:35
Alignment explanation
Indices: 8345163--8345328 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
8345153 CATGGCAAAG
*
8345163 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
8345198 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
8345233 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
8345273 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
8345308 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
8345329 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:8345282 original size:75 final size:75
Alignment explanation
Indices: 8345163--8345333 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
8345153 CATGGCAAAG
** *
8345163 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
8345222 CCATACTGAGC
65 CCATACCGAGC
8345233 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
8345298 CATACCGAGT
66 CATACCGAGC
**
8345308 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
8345334 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:8349159 original size:93 final size:93
Alignment explanation
Indices: 8349047--8349218 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
8349037 GCCCATAAGT
* *
8349047 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8349112 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
8349140 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8349205 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
8349219 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:8349214 original size:46 final size:46
Alignment explanation
Indices: 8349039--8349214 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
8349029 TGTAACCCGC
* * *
8349039 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
8349085 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
8349135 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
8349178 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8349215 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:8352492 original size:46 final size:44
Alignment explanation
Indices: 8352388--8352495 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
8352378 TGTCTTTGAC
** * * *
8352388 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
8352432 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
8352478 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
8352496 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:8358225 original size:35 final size:35
Alignment explanation
Indices: 8358198--8358363 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
8358188 CATGGCAAAG
*
8358198 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
8358233 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
8358268 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
8358308 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
8358343 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
8358364 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:8358317 original size:75 final size:75
Alignment explanation
Indices: 8358198--8358368 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
8358188 CATGGCAAAG
** *
8358198 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
8358257 CCATACTGAGC
65 CCATACCGAGC
8358268 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
8358333 CATACCGAGT
66 CATACCGAGC
**
8358343 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
8358369 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:8366739 original size:46 final size:44
Alignment explanation
Indices: 8366635--8366742 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
8366625 TGTCTTTGAC
** * * *
8366635 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
8366679 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
8366725 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
8366743 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:8373929 original size:46 final size:44
Alignment explanation
Indices: 8373826--8373933 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
8373816 TGTCTTTGAC
** * * **
8373826 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAACCATATATAAT
*
8373870 ATGGACTTACATGGCTCAATCCTGTCTCCAAAACCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAACCATA--TATAAT
8373916 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
8373934 TTTCGTTCTG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAACCATATATAAT
Found at i:8390588 original size:26 final size:26
Alignment explanation
Indices: 8390552--8390604 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8390542 TCTTTACTCG
*
8390552 CTCCTATATCGATCGATAGATACATA
1 CTCCTATATCGATCAATAGATACATA
8390578 CTCCTATATCGATCAATAGATACATA
1 CTCCTATATCGATCAATAGATACATA
8390604 C
1 C
8390605 ATACTTAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.25, G:0.09, T:0.30
Consensus pattern (26 bp):
CTCCTATATCGATCAATAGATACATA
Found at i:8392047 original size:43 final size:43
Alignment explanation
Indices: 8391986--8392120 Score: 243
Period size: 43 Copynumber: 3.1 Consensus size: 43
8391976 CCGGCATTAC
*
8391986 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
8392029 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
8392072 GCCTGCTAGGCACGAAGGCCCGAATATACATTACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
8392115 GCCTGC
1 GCCTGC
8392121 GGGATTTAAC
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 89 1.00
ACGTcount: A:0.29, C:0.33, G:0.26, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:8392153 original size:38 final size:40
Alignment explanation
Indices: 8392102--8392177 Score: 120
Period size: 38 Copynumber: 1.9 Consensus size: 40
8392092 CGAATATACA
*
8392102 TTACCGGCACGAAGCCTGCGGG-ATTTAA-CCCGGATATT
1 TTACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATATT
*
8392140 TTACCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATA
1 TTACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATA
8392178 CACATCAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 21 0.62
39 5 0.15
40 8 0.24
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (40 bp):
TTACCAGCACGAAGCCTGCGGGTATTTAAGCCCGGATATT
Found at i:8414776 original size:21 final size:21
Alignment explanation
Indices: 8414750--8414791 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
8414740 TTTTGGTCAC
8414750 TAAAAAAATTATCTTTTTAAAG
1 TAAAAAAATTAT-TTTTTAAAG
8414772 TAAAAAAATTATTTTTTAAA
1 TAAAAAAATTATTTTTTAAA
8414792 CATTGATTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
TAAAAAAATTATTTTTTAAAG
Found at i:8426020 original size:16 final size:17
Alignment explanation
Indices: 8425999--8426030 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8425989 TAGGGATCTC
8425999 AACAGTACC-GAGCTCT
1 AACAGTACCTGAGCTCT
8426015 AACAGTACCTGAGCTC
1 AACAGTACCTGAGCTC
8426031 ACCCAGCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (17 bp):
AACAGTACCTGAGCTCT
Found at i:8427429 original size:16 final size:17
Alignment explanation
Indices: 8427410--8427444 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
8427400 TACCAAAATT
8427410 TATTTTT-TTAAACTTA
1 TATTTTTATTAAACTTA
8427426 TATTTTTACTTAAACTTA
1 TATTTTTA-TTAAACTTA
8427444 T
1 T
8427445 TCACTTTTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
18 10 0.59
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (17 bp):
TATTTTTATTAAACTTA
Found at i:8429807 original size:17 final size:17
Alignment explanation
Indices: 8429785--8429818 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8429775 TATTATACGT
8429785 AAATTGTAGATTTTGTC
1 AAATTGTAGATTTTGTC
8429802 AAATTGTAGATTTTGTC
1 AAATTGTAGATTTTGTC
8429819 TTTATTTTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (17 bp):
AAATTGTAGATTTTGTC
Found at i:8436835 original size:23 final size:23
Alignment explanation
Indices: 8436805--8436852 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
8436795 ATCTATACTC
8436805 AATTCTTTAATCGAATTTGAAAT
1 AATTCTTTAATCGAATTTGAAAT
*
8436828 AATTCTTTGATCGAATTTGAAAT
1 AATTCTTTAATCGAATTTGAAAT
8436851 AA
1 AA
8436853 ATAAGAGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (23 bp):
AATTCTTTAATCGAATTTGAAAT
Found at i:8443802 original size:21 final size:22
Alignment explanation
Indices: 8443777--8443817 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
8443767 TTTCAGACTA
*
8443777 TACATGTATTA-AAATTTATAT
1 TACATGAATTATAAATTTATAT
*
8443798 TACATGAATTATTAATTTAT
1 TACATGAATTATAAATTTAT
8443818 TATTGTAACG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (22 bp):
TACATGAATTATAAATTTATAT
Found at i:8444136 original size:5 final size:5
Alignment explanation
Indices: 8444115--8444167 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
8444105 TGTTAAAATA
* *
8444115 TATAT TAAAT TATTAT TATAT TATAG TATAT TATATT ATATAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATA-T -TATAT TATAT
8444163 TATAT
1 TATAT
8444168 AAATAAGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 31 0.76
6 6 0.15
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:8444146 original size:10 final size:9
Alignment explanation
Indices: 8444112--8444168 Score: 59
Period size: 8 Copynumber: 6.6 Consensus size: 9
8444102 ATGTGTTAAA
8444112 ATATATATT
1 ATATATATT
*
8444121 AAAT-TATT
1 ATATATATT
8444129 AT-TATATT
1 ATATATATT
8444137 ATAGTATATT
1 ATA-TATATT
8444147 ATAT-TA-T
1 ATATATATT
8444154 ATATTATATT
1 ATA-TATATT
8444164 ATATA
1 ATATA
8444169 AATAAGTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.35
9 8 0.20
10 13 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATATATATT
Found at i:8444158 original size:12 final size:12
Alignment explanation
Indices: 8444113--8444168 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
8444103 TGTGTTAAAA
*
8444113 TATATATTAAAT
1 TATATATTATAT
8444125 TAT-TATTATATT
1 TATATATTATA-T
8444137 ATAGTATATTATAT
1 -TA-TATATTATAT
8444151 TATATATTATAT
1 TATATATTATAT
8444163 TATATA
1 TATATA
8444169 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:8445503 original size:18 final size:19
Alignment explanation
Indices: 8445482--8445520 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
8445472 ATATATAGAT
8445482 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
8445500 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
8445519 AT
1 AT
8445521 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:8445870 original size:39 final size:39
Alignment explanation
Indices: 8445760--8445894 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
8445750 GACCTCGAGT
* * * *
8445760 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
8445801 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
8445839 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
8445878 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
8445895 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:8446038 original size:18 final size:19
Alignment explanation
Indices: 8446017--8446057 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8446007 AATGAAATGA
8446017 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
8446035 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
8446054 GAAA
1 GAAA
8446058 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:8450580 original size:5 final size:5
Alignment explanation
Indices: 8450559--8450611 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
8450549 TGTTAAAATA
* *
8450559 TATAT TAAAT TATTAT TATAT TATAG TATAT TATATT ATATAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATA-T -TATAT TATAT
8450607 TATAT
1 TATAT
8450612 AAATAAGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 31 0.76
6 6 0.15
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:8450590 original size:10 final size:9
Alignment explanation
Indices: 8450556--8450612 Score: 59
Period size: 8 Copynumber: 6.6 Consensus size: 9
8450546 ATGTGTTAAA
8450556 ATATATATT
1 ATATATATT
*
8450565 AAAT-TATT
1 ATATATATT
8450573 AT-TATATT
1 ATATATATT
8450581 ATAGTATATT
1 ATA-TATATT
8450591 ATAT-TA-T
1 ATATATATT
8450598 ATATTATATT
1 ATA-TATATT
8450608 ATATA
1 ATATA
8450613 AATAAGTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.35
9 8 0.20
10 13 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATATATATT
Found at i:8450602 original size:12 final size:12
Alignment explanation
Indices: 8450557--8450612 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
8450547 TGTGTTAAAA
*
8450557 TATATATTAAAT
1 TATATATTATAT
8450569 TAT-TATTATATT
1 TATATATTATA-T
8450581 ATAGTATATTATAT
1 -TA-TATATTATAT
8450595 TATATATTATAT
1 TATATATTATAT
8450607 TATATA
1 TATATA
8450613 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:8451950 original size:18 final size:19
Alignment explanation
Indices: 8451929--8451967 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
8451919 ATATATAGAT
8451929 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
8451947 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
8451966 AT
1 AT
8451968 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:8452317 original size:39 final size:39
Alignment explanation
Indices: 8452207--8452341 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
8452197 GACCTCGAGT
* * * *
8452207 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
8452248 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
8452286 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
8452325 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
8452342 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:8452485 original size:18 final size:19
Alignment explanation
Indices: 8452464--8452504 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
8452454 AATGAAATGA
8452464 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
8452482 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
8452501 GAAA
1 GAAA
8452505 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:8456764 original size:27 final size:27
Alignment explanation
Indices: 8456732--8456787 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
8456722 TAAATAAGTT
8456732 AATTAATGATTCAAGTTTATCATATTA
1 AATTAATGATTCAAGTTTATCATATTA
8456759 AATTAATGATTCAAGTTTATCATATTA
1 AATTAATGATTCAAGTTTATCATATTA
8456786 AA
1 AA
8456788 ATATTTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (27 bp):
AATTAATGATTCAAGTTTATCATATTA
Found at i:8457044 original size:21 final size:21
Alignment explanation
Indices: 8457001--8457044 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
8456991 ATTAAAATAA
*
8457001 TAAAATAATATTTAATTAACT
1 TAAAATAATATTTAATCAACT
*
8457022 TAAAATAAT-TTTACTCAATCT
1 TAAAATAATATTTAATCAA-CT
8457043 TA
1 TA
8457045 TATAAAAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (21 bp):
TAAAATAATATTTAATCAACT
Found at i:8467628 original size:30 final size:30
Alignment explanation
Indices: 8467594--8467654 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
8467584 TCCTTAACTC
8467594 AAACTTTGGCAAAATTAAAATTTTGCCCCT
1 AAACTTTGGCAAAATTAAAATTTTGCCCCT
* * * * *
8467624 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTAAAATTTTGCCCCT
8467654 A
1 A
8467655 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTAAAATTTTGCCCCT
Found at i:8472680 original size:124 final size:125
Alignment explanation
Indices: 8472460--8472702 Score: 364
Period size: 124 Copynumber: 2.0 Consensus size: 125
8472450 TAAAAAAATA
*
8472460 CTCATTTCTAATCTTATTTACAAAAATGGGCCACTTAACTTTATTTATCAGAATGAGTCAAAAAA
1 CTCATTTCTAATCTTATTTACAAAAATGGGCCACTTAACTTTATTTATCAAAATGAGTCAAAAAA
*
8472525 TCCAAAACGTGCCTAAGTGGAATCGTTTTAAGGAGAAATTTCAT-AAAAACGTGCTCAAG
66 TCCAAAACGTGCCTAAGTGGAATCGTTTTAAGAAGAAATTTCATAAAAAACGTGCTCAAG
* * * * *
8472584 CTCATTTTTAATTTTATTTACAGAAATGGGCCACTTAACTTTGTTTATCAAAATGGGTCAAAAAA
1 CTCATTTCTAATCTTATTTACAAAAATGGGCCACTTAACTTTATTTATCAAAATGAGTCAAAAAA
** * *
8472649 TTTAAATA-GTGCTTACGTGGAATCGTTTTAAGAAGAAATTTCATAAAAAACGTG
66 TCCAAA-ACGTGCCTAAGTGGAATCGTTTTAAGAAGAAATTTCATAAAAAACGTG
8472703 TTGACGAGAA
Statistics
Matches: 106, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
124 96 0.91
125 10 0.09
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33
Consensus pattern (125 bp):
CTCATTTCTAATCTTATTTACAAAAATGGGCCACTTAACTTTATTTATCAAAATGAGTCAAAAAA
TCCAAAACGTGCCTAAGTGGAATCGTTTTAAGAAGAAATTTCATAAAAAACGTGCTCAAG
Found at i:8473564 original size:15 final size:15
Alignment explanation
Indices: 8473544--8473586 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
8473534 TATTGAGTAT
8473544 AATAAAATATTAAAA
1 AATAAAATATTAAAA
8473559 AAT-AAATATTTAAAA
1 AATAAAATA-TTAAAA
*
8473574 AATAATATATTAA
1 AATAAAATATTAA
8473587 TTTTTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 5 0.20
15 16 0.64
16 4 0.16
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAAAATATTAAAA
Found at i:8481020 original size:1 final size:1
Alignment explanation
Indices: 8481014--8481045 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
8481004 ACCTATCTTG
8481014 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8481046 CAGTATCAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8491594 original size:35 final size:35
Alignment explanation
Indices: 8491555--8491626 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
8491545 AATATCGTTA
*
8491555 GTTTGTATTGATATGATACTATTAACCAATATGTG
1 GTTTGTACTGATATGATACTATTAACCAATATGTG
8491590 GTTTGTACTGATATGATACTATTAACCAATATGTG
1 GTTTGTACTGATATGATACTATTAACCAATATGTG
8491625 GT
1 GT
8491627 GTCACATGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.42
Consensus pattern (35 bp):
GTTTGTACTGATATGATACTATTAACCAATATGTG
Found at i:8494981 original size:46 final size:50
Alignment explanation
Indices: 8494909--8495013 Score: 146
Period size: 46 Copynumber: 2.2 Consensus size: 50
8494899 GACAGGACAG
* * *
8494909 GACAGAAATGAGCCATATAAGTCCATA-T-CA-A-ATATATGGCTTTGGA
1 GACAGGAATGAGCCATATAAGCCCATATTACATATATATATGGCATTGGA
*
8494955 GACAGGAATGAGCCATATAAGCCCATATTAGATATATATATGGCATTGGA
1 GACAGGAATGAGCCATATAAGCCCATATTACATATATATATGGCATTGGA
8495005 GACAGGAAT
1 GACAGGAAT
8495014 AATTCTTGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
46 25 0.49
47 1 0.02
48 1 0.02
49 1 0.02
50 23 0.45
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (50 bp):
GACAGGAATGAGCCATATAAGCCCATATTACATATATATATGGCATTGGA
Found at i:8498405 original size:19 final size:19
Alignment explanation
Indices: 8498381--8498423 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
8498371 TAAAAATTTA
*
8498381 AAAAATTAAAACATAGT-TT
1 AAAAATTAAAA-ATAATGTT
8498400 AAAAA-TAAAAATAATGTT
1 AAAAATTAAAAATAATGTT
8498418 AAAAAT
1 AAAAAT
8498424 GTTTTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.19
18 12 0.57
19 5 0.24
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (19 bp):
AAAAATTAAAAATAATGTT
Found at i:8501973 original size:37 final size:37
Alignment explanation
Indices: 8501923--8501998 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
8501913 ACTAAGAGAG
*
8501923 GATGCTGTTCTACTTAGAAAGGTAATAGGTTACATTT
1 GATGCTGTTCTACTTAAAAAGGTAATAGGTTACATTT
*
8501960 GATGCTGTTCTACTTAAAAAGGTGATAGGTTACATTT
1 GATGCTGTTCTACTTAAAAAGGTAATAGGTTACATTT
8501997 GA
1 GA
8501999 GAAGGTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (37 bp):
GATGCTGTTCTACTTAAAAAGGTAATAGGTTACATTT
Found at i:8507894 original size:18 final size:17
Alignment explanation
Indices: 8507871--8507904 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
8507861 AAAAAATTGT
8507871 AATAATTATATATTTAAA
1 AATAATTATA-ATTTAAA
8507889 AATAATTATAATTTAA
1 AATAATTATAATTTAA
8507905 TAGAACTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATAATTATAATTTAAA
Found at i:8510836 original size:21 final size:21
Alignment explanation
Indices: 8510764--8510927 Score: 57
Period size: 21 Copynumber: 8.3 Consensus size: 21
8510754 CAAGGTCGCA
* * *
8510764 CACCACCTACACAAGCTCATT
1 CACCACCAACTCAAGCTCATC
*
8510785 CACCACCAACGCAA--T-A-C
1 CACCACCAACTCAAGCTCATC
* * *
8510802 CGCCCCCCACTCAAGCTCATC
1 CACCACCAACTCAAGCTCATC
* *
8510823 CACCACCTACTCAAGGT--TGC
1 CACCACCAACTCAAGCTCAT-C
* *
8510843 ACACCACCAACACAATTCTC-TC
1 -CACCACCAACTCAA-GCTCATC
*
8510865 CA-C-CC-ACTCAAGCTTATC
1 CACCACCAACTCAAGCTCATC
* ** *
8510883 CTCCACCAAGACAA--T-ACC
1 CACCACCAACTCAAGCTCATC
*
8510901 CACCACCTACTCAAGCTCATC
1 CACCACCAACTCAAGCTCATC
8510922 CACCAC
1 CACCAC
8510928 AAAGGCAATA
Statistics
Matches: 101, Mismatches: 27, Indels: 30
0.64 0.17 0.19
Matches are distributed among these distances:
17 12 0.12
18 21 0.21
19 7 0.07
20 6 0.06
21 52 0.51
22 2 0.02
23 1 0.01
ACGTcount: A:0.31, C:0.47, G:0.06, T:0.16
Consensus pattern (21 bp):
CACCACCAACTCAAGCTCATC
Found at i:8510889 original size:39 final size:39
Alignment explanation
Indices: 8510846--8511078 Score: 210
Period size: 39 Copynumber: 6.1 Consensus size: 39
8510836 AGGTTGCACA
** * * *
8510846 CCACCAACACAATTCTCTCCACCCACTCAAGCTTATCCT
1 CCACCAAGGCAATACTCGCCACCCACTCAAGCTCATCCT
* * * * *
8510885 CCACCAAGACAATACCCACCACCTACTCAAGCTCATCCA
1 CCACCAAGGCAATACTCGCCACCCACTCAAGCTCATCCT
* * * **
8510924 CCACAAAGGCAATACTCGCCACCCACTCAAACACATCAA
1 CCACCAAGGCAATACTCGCCACCCACTCAAGCTCATCCT
* * **
8510963 CCACCAATGCAATACT---CA-CCGC-CAA-CTCAAACT
1 CCACCAAGGCAATACTCGCCACCCACTCAAGCTCATCCT
*
8510996 CCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCT
1 CCACCAAGGCAATACTCGCCACCCACTCAAGCTCATCCT
* *
8511035 CCACCAAGGCAATTCTCGCCACCCACTCAAGGC-CATCCA
1 CCACCAAGGCAATACTCGCCACCCACTCAA-GCTCATCCT
8511074 CCACC
1 CCACC
8511079 CACACAAACT
Statistics
Matches: 156, Mismatches: 31, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
33 17 0.11
34 3 0.02
35 3 0.02
36 4 0.03
37 3 0.02
38 3 0.02
39 121 0.78
40 2 0.01
ACGTcount: A:0.33, C:0.46, G:0.07, T:0.14
Consensus pattern (39 bp):
CCACCAAGGCAATACTCGCCACCCACTCAAGCTCATCCT
Found at i:8510926 original size:78 final size:75
Alignment explanation
Indices: 8510822--8511089 Score: 204
Period size: 78 Copynumber: 3.5 Consensus size: 75
8510812 TCAAGCTCAT
** * * *
8510822 CCACCACCTACTCAAGGTTGCACACCACCAACACAATTCTCTCCACCCACTCAAGCTTATCCTCC
1 CCACCACCTACTCAAGCAT-C-CACCACCAACACAATACTCGCCACCCACTCAAGCTCATCCTCC
8510887 ACCAAGACAATAC
64 ACCAAG-CAATAC
* ** * * **
8510900 CCACCACCTACTCAAGCTCATCCACCACAAAGGCAATACTCGCCACCCACTCAAACACATCAACC
1 CCACCACCTACTCAAG--CATCCACCACCAACACAATACTCGCCACCCACTCAAGCTCATCCTCC
8510965 ACCAATGCAATAC
64 ACCAA-GCAATAC
* * * * ** *
8510978 TCACCGCCAACTCAA--A--CTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCTCCAC
1 CCACCACCTACTCAAGCATCCACCACCAACACAATACTCGCCACCCACTCAAGCTCATCCTCCAC
*
8511039 CAAGGCAATTC
66 CAA-GCAATAC
* * * *
8511050 TCGCCACCCACTCAAGGCCATCCACCACCCACACAA-ACTC
1 CCACCACCTACTCAA-G-CATCCACCACCAACACAATACTC
8511090 ATCCTCCACC
Statistics
Matches: 149, Mismatches: 32, Indels: 19
0.75 0.16 0.09
Matches are distributed among these distances:
72 59 0.40
74 1 0.01
76 1 0.01
77 3 0.02
78 82 0.55
79 2 0.01
80 1 0.01
ACGTcount: A:0.33, C:0.46, G:0.07, T:0.14
Consensus pattern (75 bp):
CCACCACCTACTCAAGCATCCACCACCAACACAATACTCGCCACCCACTCAAGCTCATCCTCCAC
CAAGCAATAC
Found at i:8511063 original size:72 final size:77
Alignment explanation
Indices: 8510864--8511077 Score: 224
Period size: 72 Copynumber: 2.8 Consensus size: 77
8510854 ACAATTCTCT
* * * * *
8510864 CCACCCACTCAAGCTTATCCTCCACCAAGACAATACCCACCACCTACTCAAGCTCATCCACCACA
1 CCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCAACTCAA-CACATCCACCACA
*
8510929 AAGGCAATACTCG
65 AAGGCAATACCCG
* * ** * *
8510942 CCACCCACTCAAACACATCAACCACCAATGCAATACTCACCGCCAACTCAA-AC-TCCA-C-C-A
1 CCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCAACTCAACACATCCACCACAA
8511002 AGGCAATACCCG
66 AGGCAATACCCG
* * *
8511014 CCACCCACTCAAGCTCATCCTCCACCAAGGCAATTCTCGCCACCCACTCAAGGC-CATCCACCAC
1 CCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCAACTCAA--CACATCCACCAC
8511078 CCACACAAAC
Statistics
Matches: 109, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
72 54 0.50
73 1 0.01
74 2 0.02
75 8 0.07
76 2 0.02
77 1 0.01
78 41 0.38
ACGTcount: A:0.33, C:0.46, G:0.08, T:0.14
Consensus pattern (77 bp):
CCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCAACTCAACACATCCACCACAA
AGGCAATACCCG
Found at i:8511108 original size:99 final size:99
Alignment explanation
Indices: 8510994--8511177 Score: 242
Period size: 99 Copynumber: 1.9 Consensus size: 99
8510984 CCAACTCAAA
* * * * * *
8510994 CTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATTCTCGCCACCC
1 CTCCACCAAGGCAATACCCACCACCCACACAAGCTCATCCACCACCAACGCAATACCCGCCACCC
* *
8511059 ACTCAAGGCCATCCACCACCCACACAAACTCATC
66 ACCCAAAGCCATCCACCACCCACACAAACTCATC
* * * *
8511093 CTCCACCAATGCAATATCCACCACCTACACAAGCTCATTCACCACCAACGCAATACCCGCCACCC
1 CTCCACCAAGGCAATACCCACCACCCACACAAGCTCATCCACCACCAACGCAATACCCGCCACCC
**
8511158 ACCCAAATTCATCCACCACC
66 ACCCAAAGCCATCCACCACC
8511178 TACTCAAGGT
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
99 71 1.00
ACGTcount: A:0.31, C:0.48, G:0.07, T:0.14
Consensus pattern (99 bp):
CTCCACCAAGGCAATACCCACCACCCACACAAGCTCATCCACCACCAACGCAATACCCGCCACCC
ACCCAAAGCCATCCACCACCCACACAAACTCATC
Found at i:8511112 original size:39 final size:39
Alignment explanation
Indices: 8511069--8511252 Score: 140
Period size: 39 Copynumber: 4.6 Consensus size: 39
8511059 ACTCAAGGCC
* *
8511069 ATCCACCACCCACACAAACTCATCCTCCACCAATGCAAT
1 ATCCACCACCCACACAAACTCATCCACCACCAACGCAAT
* * *
8511108 ATCCACCACCTACACAAGCTCATTCACCACCAACGCAAT
1 ATCCACCACCCACACAAACTCATCCACCACCAACGCAAT
* * * * * *
8511147 ACCCGCCACCCACCCAAATTCATCCACCACCTACTCAAGGT
1 ATCCACCACCCACACAAACTCATCCACCACCAACGCAA--T
* * * *
8511188 -TGCACACCACCTACTCAAGCTCATCCACCACCAA--CAAA
1 AT-C-CACCACCCACACAAACTCATCCACCACCAACGCAAT
* *
8511226 ATCCTCACCACCCACTCAATCTCATCC
1 AT-C-CACCACCCACACAAACTCATCC
8511253 TCCCTCACCA
Statistics
Matches: 114, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
39 85 0.75
40 3 0.03
41 2 0.02
42 24 0.21
ACGTcount: A:0.33, C:0.47, G:0.04, T:0.16
Consensus pattern (39 bp):
ATCCACCACCCACACAAACTCATCCACCACCAACGCAAT
Found at i:8511136 original size:60 final size:60
Alignment explanation
Indices: 8511014--8511138 Score: 155
Period size: 60 Copynumber: 2.1 Consensus size: 60
8511004 GCAATACCCG
* * * *
8511014 CCACCCACTCAAGCTCATCCTCCACCAAGGCAATTCTCGCCACCCACTCAAGGCCATCCA
1 CCACCCACACAAACTCATCCTCCACCAAGGCAATTCTCACCACCCACACAAGGCCATCCA
* * *
8511074 CCACCCACACAAACTCATCCTCCACCAATGCAATATC-CACCACCTACACAA-GCTCATTCA
1 CCACCCACACAAACTCATCCTCCACCAAGGCAAT-TCTCACCACCCACACAAGGC-CATCCA
8511134 CCACC
1 CCACC
8511139 AACGCAATAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
59 2 0.04
60 52 0.93
61 2 0.04
ACGTcount: A:0.30, C:0.48, G:0.06, T:0.15
Consensus pattern (60 bp):
CCACCCACACAAACTCATCCTCCACCAAGGCAATTCTCACCACCCACACAAGGCCATCCA
Found at i:8511216 original size:21 final size:21
Alignment explanation
Indices: 8511014--8511384 Score: 104
Period size: 21 Copynumber: 18.2 Consensus size: 21
8511004 GCAATACCCG
*
8511014 CCACCCACTCAAGCTCATCCT
1 CCACCCACTCAAGCTCATCCA
* ** * *
8511035 CCACCAAGGCAA-TTC-T-CG
1 CCACCCACTCAAGCTCATCCA
8511053 CCACCCACTCAAGGC-CATCCA
1 CCACCCACTCAA-GCTCATCCA
* * *
8511074 CCACCCACACAAACTCATCCT
1 CCACCCACTCAAGCTCATCCA
*
8511095 CCA-CCAATGCAA--T-ATCCA
1 CCACCCACT-CAAGCTCATCCA
* * *
8511113 CCACCTACACAAGCTCATTCA
1 CCACCCACTCAAGCTCATCCA
* * * *
8511134 CCACCAACGCAA--T-ACCCG
1 CCACCCACTCAAGCTCATCCA
* **
8511152 CCACCCACCCAAATTCATCCA
1 CCACCCACTCAAGCTCATCCA
* *
8511173 CCACCTACTCAAGGT--TGCACA
1 CCACCCACTCAAGCTCAT-C-CA
*
8511194 CCACCTACTCAAGCTCATCCA
1 CCACCCACTCAAGCTCATCCA
* ** *
8511215 CCA-CCA-ACAAAATCCT-CA
1 CCACCCACTCAAGCTCATCCA
*
8511233 CCACCCACTCAATCTCATCCTCCCTCA
1 CCACCCACTCAAGCTCA---T--C-CA
*
8511260 CCACCCACTCAAGCTCATCCT
1 CCACCCACTCAAGCTCATCCA
* ** *
8511281 CCACCAAGACAA--T-ACCCA
1 CCACCCACTCAAGCTCATCCA
8511299 CCACCCACTCAAGCTCATCCA
1 CCACCCACTCAAGCTCATCCA
* ** *
8511320 CCACCAAGGCAA--T-A-CTCG
1 CCACCCACTCAAGCTCATC-CA
* *
8511338 CCACCCACTCAAACACATCCA
1 CCACCCACTCAAGCTCATCCA
* * *
8511359 CCACCCACACAAACTCATCCT
1 CCACCCACTCAAGCTCATCCA
8511380 CCACC
1 CCACC
8511385 AAGGCAGTAC
Statistics
Matches: 250, Mismatches: 66, Indels: 68
0.65 0.17 0.18
Matches are distributed among these distances:
17 1 0.00
18 60 0.24
19 18 0.07
20 18 0.07
21 129 0.52
22 3 0.01
23 2 0.01
24 1 0.00
27 18 0.07
ACGTcount: A:0.32, C:0.49, G:0.05, T:0.15
Consensus pattern (21 bp):
CCACCCACTCAAGCTCATCCA
Found at i:8511258 original size:27 final size:27
Alignment explanation
Indices: 8511228--8511282 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
8511218 CCAACAAAAT
*
8511228 CCTCACCACCCACTCAATCTCATCCTC
1 CCTCACCACCCACTCAAGCTCATCCTC
8511255 CCTCACCACCCACTCAAGCTCATCCTC
1 CCTCACCACCCACTCAAGCTCATCCTC
8511282 C
1 C
8511283 ACCAAGACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.56, G:0.02, T:0.20
Consensus pattern (27 bp):
CCTCACCACCCACTCAAGCTCATCCTC
Found at i:8511270 original size:66 final size:66
Alignment explanation
Indices: 8511192--8511318 Score: 193
Period size: 66 Copynumber: 1.9 Consensus size: 66
8511182 CAAGGTTGCA
* *
8511192 CACCACCTACTCAAGCTCATCCACCACCAACAAAAT-CCTCACCACCCACTCAATCTCATCCTCC
1 CACCACCCACTCAAGCTCATCCACCACCAACAAAATACC-CACCACCCACTCAAGCTCATCCTCC
8511256 CT
65 CT
* * *
8511258 CACCACCCACTCAAGCTCATCCTCCACCAAGACAATACCCACCACCCACTCAAGCTCATCC
1 CACCACCCACTCAAGCTCATCCACCACCAACAAAATACCCACCACCCACTCAAGCTCATCC
8511319 ACCACCAAGG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 53 0.96
67 2 0.04
ACGTcount: A:0.31, C:0.50, G:0.03, T:0.16
Consensus pattern (66 bp):
CACCACCCACTCAAGCTCATCCACCACCAACAAAATACCCACCACCCACTCAAGCTCATCCTCCC
T
Found at i:8511301 original size:39 final size:39
Alignment explanation
Indices: 8511258--8511363 Score: 158
Period size: 39 Copynumber: 2.7 Consensus size: 39
8511248 CATCCTCCCT
*
8511258 CACCACCCACTCAAGCTCATCCTCCACCAAGACAATACC
1 CACCACCCACTCAAGCTCATCCACCACCAAGACAATACC
* *
8511297 CACCACCCACTCAAGCTCATCCACCACCAAGGCAATACT
1 CACCACCCACTCAAGCTCATCCACCACCAAGACAATACC
* * *
8511336 CGCCACCCACTCAAACACATCCACCACC
1 CACCACCCACTCAAGCTCATCCACCACC
8511364 CACACAAACT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 61 1.00
ACGTcount: A:0.33, C:0.50, G:0.06, T:0.11
Consensus pattern (39 bp):
CACCACCCACTCAAGCTCATCCACCACCAAGACAATACC
Found at i:8511363 original size:60 final size:60
Alignment explanation
Indices: 8511296--8511969 Score: 377
Period size: 60 Copynumber: 11.1 Consensus size: 60
8511286 AAGACAATAC
* * * *
8511296 CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATACTCGCCACCCACTCAAACACAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
* * *
8511356 CCACCACCCACACAAACTCATCCTCCACCAAGGCAGTACCCACCGCCCACTCAAACACAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
** *
8511416 CCACCACCAATGCAATACTCACCGCCAACTCAAACTCCACCAAGGCAATACCCGCCACCCACTCA
1 CCACCACC----C---ACTCA-----AACTCATCCTCCACCAAGGCAATACCCACCACCCACTCA
* *
8511481 AGCTCAT
54 AACACAT
* * ** * * *
8511488 CCTCCACCAAGGCAATACTCA-CCACCCACTCAAGGCCAT--CCACCACCCATTCAAACACAT
1 CCACCACCCACTCAA-ACTCATCC-TCCAC-CAAGGCAATACCCACCACCCACTCAAACACAT
* * * * * * *
8511548 CCTCCACCATTAATGCAATACCCA-CCACCCACTCAA-ACACAT--CCACCACCAACTC-AA-AC
1 CCACCACC--CACT-CAA-ACTCATCC-TCCAC-CAAGGCA-ATACCCACCACCCACTCAAACAC
8511607 -T
59 AT
* ** ** ** * ** *
8511608 CCTCCACAAAGGCAATAC-CCGCCACCCACTCAA-GC--TCATTCACCACCCACTCAAGGC-CAT
1 CCACCACCCACTCAA-ACTCATCC-TCCAC-CAAGGCAAT-ACCCACCACCCACTCAA-ACACAT
* ** * * * * *
8511668 CCGCCACCCACTCAAGTTTATCCTCCACCAAGGCAATACTCGCCACCCACTCAAGGC-TAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAA-ACACAT
* * * *
8511728 CCACCACCAACTCAAA--C-TCCTCCACAAAGGCAATACCCGCCACCCACTCAAGGC-CAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAA-ACACAT
* ** * * *
8511785 CCGCCACCCACTCAAGTTCATCCTCCACCAAGGCAATACCCACCACCCATTCAAGCTCAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
* * * *
8511845 CCACCACCTACACAAACTCACCCTCCACCAAGGCAATGCCCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
* *
8511905 CCACCACCAACTCAAA--C-TCCTCCACCAAGGCAATACCCGCCACCCACTCAAACACAT
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
8511962 CCACCACC
1 CCACCACC
8511970 AAAGCTATAC
Statistics
Matches: 494, Mismatches: 85, Indels: 73
0.76 0.13 0.11
Matches are distributed among these distances:
54 1 0.00
56 1 0.00
57 125 0.25
58 6 0.01
59 10 0.02
60 240 0.49
61 12 0.02
62 12 0.02
63 33 0.07
64 1 0.00
65 3 0.01
67 4 0.01
72 46 0.09
ACGTcount: A:0.32, C:0.48, G:0.07, T:0.13
Consensus pattern (60 bp):
CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
Found at i:8511399 original size:39 final size:39
Alignment explanation
Indices: 8511356--8512008 Score: 183
Period size: 39 Copynumber: 16.7 Consensus size: 39
8511346 TCAAACACAT
* *
8511356 CCACCACCCACACAAACTCATCCTCCACCAAGGCAGTAC
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATAC
* * * *
8511395 CCACCGCCCACTCAAACACATCCACCACCAATGCAATAC
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATAC
* * *
8511434 TCACCGCCAACTC-AA---A--CTCCACCAAGGCAATAC
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATAC
* *
8511467 CCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATAC
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATAC
* * * * **
8511506 TCACCACCCACTCAAGGC-CATCCACCACCCATTCAA-AC
1 CCACCACCCACTCAA-ACTCATCCTCCACCAAGGCAATAC
* * * * ** *
8511544 ACATCC-TCCAC-CATTAA-TGCAATACCCACCACCCACTCAAACAC
1 CCA-CCACCCACTCA--AACT-C-AT--CCTCCACCAAGGC-AATAC
* *
8511588 ATCCACCACCAACTCAAA--C-TCCTCCACAAAGGCAATAC
1 --CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATAC
* * * *
8511626 CCGCCACCCACTCAAGCTCATTCACCACCCACTCAAGGCCAT--
1 CCACCACCCACTCAAACTCA-T--CC-TCCAC-CAAGGCAATAC
* ** *
8511668 CCGCCACCCACTCAAGTTTATCCTCCACCAAGGCAATAC
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATAC
* * * * **
8511707 TCGCCACCCACTCAAGGCT-ATCCACCACCAACTCAA-AC
1 CCACCACCCACTCAA-ACTCATCCTCCACCAAGGCAATAC
* ** ** ** * *
8511745 TCCTCCACAAAGGCAATAC-CCGCCACCCACTCAAGGCCAT--
1 -CCACCACCCACTCAA-ACTCATCC-TCCAC-CAAGGCAATAC
* **
8511785 CCGCCACCCACTCAAGTTCATCCTCCACCAAGGCAATAC
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATAC
* * * * **
8511824 CCACCACCCATTCAAGCTCATCCACCACCTACACAA-AC
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATAC
* * * * * ** *
8511862 TCACC-CTCCAC-CAAGGC-AATGCCCACCACCCACTCAAACAC
1 CCACCAC-CCACTCAA-ACTCAT--CCTCCACCAAGGC-AATAC
*
8511903 ATCCACCACCAACTCAAA--C-TCCTCCACCAAGGCAATAC
1 --CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATAC
* * * * *
8511941 CCGCCACCCACTCAAACACATCCACCACCAAAGCTATAC
1 CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATAC
* * *
8511980 CCACCACCTACTCAAGCTCATCCACCACC
1 CCACCACCCACTCAAACTCATCCTCCACC
8512009 CACTGAAACA
Statistics
Matches: 457, Mismatches: 104, Indels: 106
0.69 0.16 0.16
Matches are distributed among these distances:
33 24 0.05
34 1 0.00
35 1 0.00
36 27 0.06
37 25 0.05
38 41 0.09
39 245 0.54
40 13 0.03
41 10 0.02
42 32 0.07
43 14 0.03
44 13 0.03
45 4 0.01
46 5 0.01
47 2 0.00
ACGTcount: A:0.32, C:0.47, G:0.07, T:0.13
Consensus pattern (39 bp):
CCACCACCCACTCAAACTCATCCTCCACCAAGGCAATAC
Found at i:8511417 original size:99 final size:99
Alignment explanation
Indices: 8511258--8511450 Score: 287
Period size: 99 Copynumber: 1.9 Consensus size: 99
8511248 CATCCTCCCT
* * * *
8511258 CACCACCCACTCAAGCTCATCCTCCACCAAGACAATACCCACCACCCACTCAAGCTCATCCACCA
1 CACCACCCACACAAACTCATCCTCCACCAAGACAATACCCACCACCCACTCAAACACATCCACCA
* *
8511323 CCAAGGCAATACTCGCCACCCACTCAAACACATC
66 CCAAGGCAATACTCACCACCAACTCAAACACATC
* * *
8511357 CACCACCCACACAAACTCATCCTCCACCAAGGCAGTACCCACCGCCCACTCAAACACATCCACCA
1 CACCACCCACACAAACTCATCCTCCACCAAGACAATACCCACCACCCACTCAAACACATCCACCA
* *
8511422 CCAATGCAATACTCACCGCCAACTCAAAC
66 CCAAGGCAATACTCACCACCAACTCAAAC
8511451 TCCACCAAGG
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 83 1.00
ACGTcount: A:0.34, C:0.48, G:0.06, T:0.11
Consensus pattern (99 bp):
CACCACCCACACAAACTCATCCTCCACCAAGACAATACCCACCACCCACTCAAACACATCCACCA
CCAAGGCAATACTCACCACCAACTCAAACACATC
Found at i:8511460 original size:72 final size:72
Alignment explanation
Indices: 8511378--8511520 Score: 205
Period size: 72 Copynumber: 2.0 Consensus size: 72
8511368 CAAACTCATC
* * * *
8511378 CTCCACCAAGGCAGTACCCACCGCCCACTCAAACACATCCACCACCAATGCAATACTCACCGCCA
1 CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAGGCAATACTCACCACCA
8511443 ACTCAAA
66 ACTCAAA
* * * * *
8511450 CTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCC
1 CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAGGCAATACTCACCACCA
8511515 ACTCAA
66 ACTCAA
8511521 GGCCATCCAC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
72 62 1.00
ACGTcount: A:0.33, C:0.47, G:0.08, T:0.12
Consensus pattern (72 bp):
CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAGGCAATACTCACCACCA
ACTCAAA
Found at i:8511531 original size:132 final size:132
Alignment explanation
Indices: 8511258--8511585 Score: 317
Period size: 132 Copynumber: 2.4 Consensus size: 132
8511248 CATCCTCCCT
* * * * *
8511258 CACCACCCACTCAAGCTCATCCTCCACC-AA-GACAATACCCACCACCCACTCAAGCTCATCCAC
1 CACCACCCACTCAAACACATCCACCACCTAATG-CAATACCCACCACCAACTCAA----A--CTC
* * *
8511321 CACCAAGGCAATACTCGCCACCCACTCAAACACATCCACCACCCACACAAACTCATCCTCCACCA
59 CACCAAGGCAATACCCGCCACCCACTCAAACACATCCACCACCAACACAAACTCATCCCCCACCA
8511386 AGGCAGTACC
124 AGGCAGTA-C
* * *
8511396 CACCGCCCACTCAAACACATCCACCACC-AATGCAATACTCACCGCCAACTCAAACTCCACCAAG
1 CACCACCCACTCAAACACATCCACCACCTAATGCAATACCCACCACCAACTCAAACTCCACCAAG
* * * **
8511460 GCAATACCCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCA-CCACCCACTCAAGGC
66 GCAATACCCGCCACCCACTCAAACACATCCACCACCAACACAA-ACTCATCC-CCCAC-CAAGG-
8511524 CA-T-C
127 CAGTAC
* * *
8511528 CACCACCCATTCAAACACATCCTCCACCATTAATGCAATACCCACCACCCACTCAAAC
1 CACCACCCACTCAAACACATCCACCACC--TAATGCAATACCCACCACCAACTCAAAC
8511586 ACATCCACCA
Statistics
Matches: 160, Mismatches: 22, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
132 73 0.46
133 9 0.06
134 7 0.04
135 26 0.16
138 44 0.28
139 1 0.01
ACGTcount: A:0.34, C:0.48, G:0.06, T:0.12
Consensus pattern (132 bp):
CACCACCCACTCAAACACATCCACCACCTAATGCAATACCCACCACCAACTCAAACTCCACCAAG
GCAATACCCGCCACCCACTCAAACACATCCACCACCAACACAAACTCATCCCCCACCAAGGCAGT
AC
Found at i:8511548 original size:21 final size:21
Alignment explanation
Indices: 8511507--8511606 Score: 82
Period size: 21 Copynumber: 4.8 Consensus size: 21
8511497 AGGCAATACT
*
8511507 CACCACCCACTCAAGGC-CATC
1 CACCACCCACTCAA-ACACATC
*
8511528 CACCACCCATTCAAACACATC
1 CACCACCCACTCAAACACATC
* * *
8511549 CTCCA-CCA-TTAATGCA-ATACC
1 CACCACCCACTCAA-ACACAT--C
8511570 CACCACCCACTCAAACACATC
1 CACCACCCACTCAAACACATC
*
8511591 CACCACCAACTCAAAC
1 CACCACCCACTCAAAC
8511607 TCCTCCACAA
Statistics
Matches: 63, Mismatches: 9, Indels: 14
0.73 0.10 0.16
Matches are distributed among these distances:
19 5 0.08
20 6 0.10
21 42 0.67
22 5 0.08
23 5 0.08
ACGTcount: A:0.36, C:0.48, G:0.03, T:0.13
Consensus pattern (21 bp):
CACCACCCACTCAAACACATC
Found at i:8511695 original size:21 final size:21
Alignment explanation
Indices: 8511629--8512068 Score: 104
Period size: 21 Copynumber: 22.2 Consensus size: 21
8511619 GCAATACCCG
*
8511629 CCACCCACTCAAGCTCATTCA
1 CCACCCACTCAAGCTCATCCA
*
8511650 CCACCCACTCAAGGC-CATCCG
1 CCACCCACTCAA-GCTCATCCA
* * *
8511671 CCACCCACTCAAGTTTATCCT
1 CCACCCACTCAAGCTCATCCA
* ** *
8511692 CCACCAAGGCAA--T-A-CTCG
1 CCACCCACTCAAGCTCATC-CA
8511710 CCACCCACTCAAGGCT-ATCCA
1 CCACCCACTCAA-GCTCATCCA
* * *
8511731 CCACCAACTCAAACTCCTCCA
1 CCACCCACTCAAGCTCATCCA
* ** * *
8511752 -CA--AAGGCAA--T-ACCCG
1 CCACCCACTCAAGCTCATCCA
*
8511767 CCACCCACTCAAGGC-CATCCG
1 CCACCCACTCAA-GCTCATCCA
* *
8511788 CCACCCACTCAAGTTCATCCT
1 CCACCCACTCAAGCTCATCCA
* ** *
8511809 CCACCAAGGCAA--T-ACCCA
1 CCACCCACTCAAGCTCATCCA
*
8511827 CCACCCATTCAAGCTCATCCA
1 CCACCCACTCAAGCTCATCCA
* * * * *
8511848 CCACCTACACAAACTCACCCT
1 CCACCCACTCAAGCTCATCCA
* **
8511869 CCACCAAGGCAA--TGC--CCA
1 CCACCCACTCAAGCT-CATCCA
* *
8511887 CCACCCACTCAAACACATCCA
1 CCACCCACTCAAGCTCATCCA
* * *
8511908 CCACCAACTCAAACTCCTCCA
1 CCACCCACTCAAGCTCATCCA
** * *
8511929 CCA---AGGCAA--T-ACCCG
1 CCACCCACTCAAGCTCATCCA
* *
8511944 CCACCCACTCAAACACATCCA
1 CCACCCACTCAAGCTCATCCA
8511965 CCA-CCA---AAGCT-ATACCCA
1 CCACCCACTCAAGCTCAT--CCA
*
8511983 CCACCTACTCAAGCTCATCCA
1 CCACCCACTCAAGCTCATCCA
* * *
8512004 CCACCCACTGAAACACATCCA
1 CCACCCACTCAAGCTCATCCA
* *
8512025 CCACCAACACAA--T-A-CTCA
1 CCACCCACTCAAGCTCATC-CA
*
8512043 CCACCCACTCAAGCCCATCCA
1 CCACCCACTCAAGCTCATCCA
8512064 CCACC
1 CCACC
8512069 AAGGCAATAC
Statistics
Matches: 300, Mismatches: 77, Indels: 84
0.65 0.17 0.18
Matches are distributed among these distances:
15 7 0.02
16 6 0.02
17 5 0.02
18 70 0.23
19 6 0.02
20 11 0.04
21 184 0.61
22 9 0.03
23 2 0.01
ACGTcount: A:0.32, C:0.48, G:0.07, T:0.13
Consensus pattern (21 bp):
CCACCCACTCAAGCTCATCCA
Found at i:8511753 original size:138 final size:139
Alignment explanation
Indices: 8511506--8511800 Score: 416
Period size: 138 Copynumber: 2.1 Consensus size: 139
8511496 AAGGCAATAC
* *
8511506 TCACCACCCACTCAAGGCCATCCACCACCCATTCAAACACATCCTCCACCATTAATGCAATACCC
1 TCACCACCCACTCAAGGCCATCCACCACCCACTCAAACACATCCTCCACC--TAAGGCAATACCC
8511571 ACCACCCACTCAAACACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCA
64 ACCACCCACTCAAACACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCA
8511636 CTCAA-GCTCAT
129 CTCAAGGC-CAT
* **** * *
8511647 TCACCACCCACTCAAGGCCATCCGCCACCCACTCAAGTTTATCCTCCACC-AAGGCAATACTCGC
1 TCACCACCCACTCAAGGCCATCCACCACCCACTCAAACACATCCTCCACCTAAGGCAATACCCAC
* *
8511711 CACCCACTCAAGGC-TATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCAC
66 CACCCACTCAA-ACACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCAC
8511775 TCAAGGCCAT
130 TCAAGGCCAT
* *
8511785 CCGCCACCCACTCAAG
1 TCACCACCCACTCAAG
8511801 TTCATCCTCC
Statistics
Matches: 139, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
138 92 0.66
139 3 0.02
141 44 0.32
ACGTcount: A:0.32, C:0.47, G:0.08, T:0.14
Consensus pattern (139 bp):
TCACCACCCACTCAAGGCCATCCACCACCCACTCAAACACATCCTCCACCTAAGGCAATACCCAC
CACCCACTCAAACACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCACT
CAAGGCCAT
Found at i:8511852 original size:138 final size:135
Alignment explanation
Indices: 8511562--8511831 Score: 348
Period size: 138 Copynumber: 2.0 Consensus size: 135
8511552 CACCATTAAT
8511562 GCAATACCCACCACCCACTCAAACACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACC
1 GCAATA-CCACCACCCACTCAAACACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACC
* * * * *
8511627 CGCCACCCACTCAAGCTCATTCACCACCCACTCAAGGCCATCCGCCACCCACTCAAGTTTATCCT
65 CGCCACCCACTCAAGCTCATCCACCACCCACTCAAGGCCATCCGCCACCAACGCAA--TTACCCA
8511692 CCACCAAG
128 CCACCAAG
* * *
8511700 GCAATACTCGCCACCCACTCAAGGC-TATCCACCACCAACTCAAACTCCTCCACAAAGGCAATAC
1 GCAATAC-CACCACCCACTCAA-ACACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATAC
* ** * *
8511764 CCGCCACCCACTCAAGGC-CATCCGCCACCCACTCAAGTTCATCCTCCACCAAGGCAA-TACCCA
64 CCGCCACCCACTCAA-GCTCATCCACCACCCACTCAAGGCCATCCGCCACCAACGCAATTACCCA
8511827 CCACC
128 CCACC
8511832 CATTCAAGCT
Statistics
Matches: 116, Mismatches: 13, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
135 9 0.08
137 1 0.01
138 103 0.89
139 3 0.03
ACGTcount: A:0.31, C:0.47, G:0.09, T:0.13
Consensus pattern (135 bp):
GCAATACCACCACCCACTCAAACACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCC
GCCACCCACTCAAGCTCATCCACCACCCACTCAAGGCCATCCGCCACCAACGCAATTACCCACCA
CCAAG
Found at i:8511873 original size:138 final size:139
Alignment explanation
Indices: 8511569--8511875 Score: 322
Period size: 138 Copynumber: 2.2 Consensus size: 139
8511559 AATGCAATAC
* * *
8511569 CCACCACCCACTCAAACACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACC
1 CCACCACCTACACAAACTCATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACC
* * * * *
8511634 CACTCAAGCTCATTCACCACCCACTCAAGGCCATCCGCCACCCACTCAAGTTTATCCTCCACCAA
66 CACTCAAGCTCATCCACCACCCACTCAAGGCCATCCGCCACCAACGCAA--TTACCCACCACCAA
8511699 GGCAATACTCG
129 GGCAATACTCG
**
8511710 CCACC-CACT-CA-AGGCT-ATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCAC
1 CCACCAC-CTACACAAACTCATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCAC
* ** * * *
8511771 CCACTCAAGGC-CATCCGCCACCCACTCAAGTTCATCCTCCACCAAGGCAA-TACCCACCACCCA
65 CCACTCAA-GCTCATCCACCACCCACTCAAGGCCATCCGCCACCAACGCAATTACCCACCACCAA
** * *
8511834 TTCAA-GCTCAT
129 GGCAATACTC-G
* *
8511845 CCACCACCTACACAAACTCACCCTCCACCAA
1 CCACCACCTACACAAACTCATCCACCACCAA
8511876 GGCAATGCCC
Statistics
Matches: 135, Mismatches: 24, Indels: 17
0.77 0.14 0.10
Matches are distributed among these distances:
134 3 0.02
135 20 0.15
136 3 0.02
137 3 0.02
138 94 0.70
139 4 0.03
140 2 0.01
141 6 0.04
ACGTcount: A:0.31, C:0.48, G:0.07, T:0.14
Consensus pattern (139 bp):
CCACCACCTACACAAACTCATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACC
CACTCAAGCTCATCCACCACCCACTCAAGGCCATCCGCCACCAACGCAATTACCCACCACCAAGG
CAATACTCG
Found at i:8511908 original size:18 final size:18
Alignment explanation
Indices: 8511887--8511966 Score: 54
Period size: 18 Copynumber: 4.3 Consensus size: 18
8511877 GCAATGCCCA
8511887 CCACCCACTCAAACACAT
1 CCACCCACTCAAACACAT
* *
8511905 CCACCACCAACTCAAACTCCT
1 CCA-C-CC-ACTCAAACACAT
* ** **
8511926 CCACCAAGGCAATAC-CCG
1 CCACCCACTCAA-ACACAT
8511944 CCACCCACTCAAACACAT
1 CCACCCACTCAAACACAT
8511962 CCACC
1 CCACC
8511967 ACCAAAGCTA
Statistics
Matches: 46, Mismatches: 11, Indels: 10
0.69 0.16 0.15
Matches are distributed among these distances:
17 2 0.04
18 24 0.52
19 4 0.09
20 3 0.07
21 13 0.28
ACGTcount: A:0.35, C:0.51, G:0.04, T:0.10
Consensus pattern (18 bp):
CCACCCACTCAAACACAT
Found at i:8511987 original size:57 final size:56
Alignment explanation
Indices: 8511689--8512031 Score: 264
Period size: 60 Copynumber: 5.9 Consensus size: 56
8511679 TCAAGTTTAT
* * * *
8511689 CCTCCACCAAGGCAATACTCGCCACCCACTCAAGGC-TATCCACCACC-AACTCAAAC
1 CCTCCACCAAGGCAATACCCACCACCCACTCAA-ACACATCCACCACCAAACT-AAAC
* * * * * *
8511745 TCCTCCACAAAGGCAATACCCGCCACCCACTCAAGGC-CATCCGCCACC-CACTCAAGTTCAT
1 -CCTCCACCAAGGCAATACCCACCACCCACTCAA-ACACATCCACCACCAAACT-AA----AC
* * * * *
8511806 CCTCCACCAAGGCAATACCCACCACCCATTCAAGCTCATCCACCACCTACACAAACTCAC
1 CCTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACC-AAACTAA---AC
*
8511866 CCTCCACCAAGGCAATGCCCACCACCCACTCAAACACATCCACCACC-AACTCAAAC
1 CCTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAACT-AAAC
* *
8511922 TCCTCCACCAAGGCAATACCCGCCACCCACTCAAACACATCCACCACCAAAGCTATAC
1 -CCTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAA-CTAAAC
* * ** * *
8511980 CCACCACCTACTCAAGCTCATCCACCACCCACTGAAACACATCCACCACCAA
1 CCTCCACCAAGGCAA--T-ACCCACCACCCACTCAAACACATCCACCACCAA
8512032 CACAATACTC
Statistics
Matches: 243, Mismatches: 29, Indels: 25
0.82 0.10 0.08
Matches are distributed among these distances:
56 2 0.01
57 105 0.43
58 7 0.03
59 7 0.03
60 116 0.48
61 3 0.01
62 3 0.01
ACGTcount: A:0.33, C:0.48, G:0.07, T:0.12
Consensus pattern (56 bp):
CCTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAACTAAAC
Found at i:8512005 original size:117 final size:117
Alignment explanation
Indices: 8511296--8512041 Score: 446
Period size: 117 Copynumber: 6.4 Consensus size: 117
8511286 AAGACAATAC
* * ** * * ** * *
8511296 CCACCACCCACTCAAGCTCATCCACCACCAAGGCAATACT-CGCCACCCACTCAAACACATCCAC
1 CCACCACCCACTCAAACACATCCACCACCAACTCAATACTCCTCCACCAAGGC-AATAC--CCGC
* * * * * *
8511360 CACCCACACAAACTCATCCTCCACCAAGGCAGTACCCACCGCCCACTCAAACACAT
63 CACCCACTCAAACTCATCCACCACCAAAGCA-TACCCACCACCCACTCAAGCTCAT
* * *
8511416 CCACCA-CCAATGC-AATAC-T-CACCGCCAACTCAA-A---CTCCACCAAGGCAATACCCGCCA
1 CCACCACCCACT-CAAACACATCCACCACCAACTCAATACTCCTCCACCAAGGCAATACCCGCCA
* * * *
8511473 CCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCCACTCAAGGC-CAT
65 CCCACTCAAACTCATCCACCACCAAAGC-ATACCCACCACCCACTCAA-GCTCAT
* * * * * ** *
8511527 CCACCACCCATTCAAACACATCCTCCACCATTAATGCAATAC-CCACCACCCACTCAAACACATC
1 CCACCACCCACTCAAACACATCCACCACCA--ACT-CAATACTCCTCCACCAAGGC-AATAC--C
* * * * *
8511591 CACCACCAACTCAAACTCCTCCA-CA--AAGGCAATACCCGCCACCCACTCAAGCTCAT
60 CGCCACCCACTCAAACTCATCCACCACCAAAGC-ATACCCACCACCCACTCAAGCTCAT
* * * * *
8511647 TCACCACCCACTCAAGGC-CATCCGCCACCCACTCAAGTTTA-TCCTCCACCAAGGCAATACTCG
1 CCACCACCCACTCAA-ACACATCCACCACCAACTCAA---TACTCCTCCACCAAGGCAATACCCG
* ** * * ** ** *
8511710 CCACCCACTCAAGGCT-ATCCACCACCAACTCAAACTCCTCCACAAAGGCAA--T-AC
62 CCACCCACTCAA-ACTCATCCACCACCAAAGCATAC-CCACCACCCACTCAAGCTCAT
* * * * * *
8511764 CCGCCACCCACTCAAGGC-CATCCGCCACCCACTCAAGTTCATCCTCCACCAAGGCAATACCCAC
1 CCACCACCCACTCAA-ACACATCCACCACCAACTCAA-TAC-TCCTCCACCAAGGCAATACCCGC
* * * * * *
8511828 CACCCATTCAAGCTCATCCACCACCTACA-CAAACTCACC-CTCCAC-CAAGGC-AAT
63 CACCCACTCAAACTCATCCACCACC-AAAGCATACCCACCAC-CCACTCAA-GCTCAT
8511882 GCCCACCACCCACTCAAACACATCCACCACCAACTCAA-ACTCCTCCACCAAGGCAATACCCGCC
1 --CCACCACCCACTCAAACACATCCACCACCAACTCAATACTCCTCCACCAAGGCAATACCCGCC
* *
8511946 ACCCACTCAAACACATCCACCACCAAAGCTATACCCACCACCTACTCAAGCTCAT
64 ACCCACTCAAACTCATCCACCACCAAAGC-ATACCCACCACCCACTCAAGCTCAT
* *
8512001 CCACCACCCACTGAAACACATCCACCACCAACACAATACTC
1 CCACCACCCACTCAAACACATCCACCACCAACTCAATACTC
8512042 ACCACCCACT
Statistics
Matches: 490, Mismatches: 91, Indels: 92
0.73 0.14 0.14
Matches are distributed among these distances:
111 57 0.12
112 10 0.02
113 5 0.01
114 14 0.03
115 5 0.01
116 12 0.02
117 193 0.39
118 28 0.06
119 22 0.04
120 118 0.24
121 5 0.01
122 2 0.00
123 19 0.04
ACGTcount: A:0.33, C:0.47, G:0.07, T:0.13
Consensus pattern (117 bp):
CCACCACCCACTCAAACACATCCACCACCAACTCAATACTCCTCCACCAAGGCAATACCCGCCAC
CCACTCAAACTCATCCACCACCAAAGCATACCCACCACCCACTCAAGCTCAT
Found at i:8512007 original size:177 final size:177
Alignment explanation
Indices: 8511622--8512044 Score: 448
Period size: 177 Copynumber: 2.4 Consensus size: 177
8511612 CACAAAGGCA
* * * * * * ** *
8511622 ATACCCGCCACCCACTCAAGCTCATTCACCACCCACTCAAGGCCATCCGCCACCCACTCAAGTTT
1 ATACCCACCACCAACTCAAGCTCATCCACCACCCACTCAA-GCCATCCACCACCAACACAAACTC
* * * * *
8511687 ATCCTCCACCAAGGCAATACTCGCCACCCACTCAAGGCTATCCACCACCAACTCAAACTCCTCCA
65 ACCCTCCACCAAGGCAATACCCACCACCCACTCAAGACCATCCACCACCAACTCAAACTCCTCCA
* *
8511752 CAAAGGCAATACCCGCCACCCACTCAAGGCCATCCGCCACCCACTCAAGT
130 CAAAGGCAATACCCGCCACCCACTCAAGACCATCCACCACCCA--CAAGT
* * ** * * *
8511802 -TCATCCTCCACCAAGGCAA--T-ACCCACCACCCATTCAAGCTCATCCACCACCTACACAAACT
1 AT-ACCCACCACCAACTCAAGCTCATCCACCACCCACTCAAGC-CATCCACCACCAACACAAACT
*
8511863 CACCCTCCACCAAGGCAATGCCCACCACCCACTCAA-ACACATCCACCACCAACTCAAACTCCTC
64 CACCCTCCACCAAGGCAATACCCACCACCCACTCAAGAC-CATCCACCACCAACTCAAACTCCTC
*
8511927 CACCAAGGCAATACCCGCCACCCACTCAA-ACACATCCACCA-CCA-AAGCT
128 CACAAAGGCAATACCCGCCACCCACTCAAGAC-CATCCACCACCCACAAG-T
* * *
8511976 ATACCCACCACCTACTCAAGCTCATCCACCACCCACTGAAACACATCCACCACCAACACAATACT
1 ATACCCACCACCAACTCAAGCTCATCCACCACCCACTCAAGC-CATCCACCACCAACACAA-ACT
8512041 CACC
64 CACC
8512045 ACCCACTCAA
Statistics
Matches: 199, Mismatches: 34, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
173 3 0.02
174 13 0.07
175 1 0.01
176 8 0.04
177 153 0.77
178 8 0.04
179 1 0.01
180 12 0.06
ACGTcount: A:0.32, C:0.48, G:0.07, T:0.13
Consensus pattern (177 bp):
ATACCCACCACCAACTCAAGCTCATCCACCACCCACTCAAGCCATCCACCACCAACACAAACTCA
CCCTCCACCAAGGCAATACCCACCACCCACTCAAGACCATCCACCACCAACTCAAACTCCTCCAC
AAAGGCAATACCCGCCACCCACTCAAGACCATCCACCACCCACAAGT
Found at i:8512018 original size:60 final size:60
Alignment explanation
Indices: 8511824--8512068 Score: 211
Period size: 60 Copynumber: 4.1 Consensus size: 60
8511814 AAGGCAATAC
* * * * * * *
8511824 CCACCACCCATTCAAGCTCATCCACCACCTACACAA-ACTCACC-CTCCAC-CAAGGCAAT
1 CCACCACCCACTCAAACACATCCACCACCAACACAATACCCACCAC-CCACTCAAGCCCAT
* * * * *
8511882 GCCCACCACCCACTCAAACACATCCACCACCAACTCAA-A--CTCC-TCCAC-CAAGGCAAT
1 --CCACCACCCACTCAAACACATCCACCACCAACACAATACCCACCACCCACTCAAGCCCAT
* * * *
8511939 ACCCGCCACCCACTCAAACACATCCACCACCAA-AGCTATACCCACCACCTACTCAAGCTCAT
1 --CCACCACCCACTCAAACACATCCACCACCAACA-CAATACCCACCACCCACTCAAGCCCAT
* *
8512001 CCACCACCCACTGAAACACATCCACCACCAACACAATACTCACCACCCACTCAAGCCCAT
1 CCACCACCCACTCAAACACATCCACCACCAACACAATACCCACCACCCACTCAAGCCCAT
8512061 CCACCACC
1 CCACCACC
8512069 AAGGCAATAC
Statistics
Matches: 155, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
57 46 0.30
58 4 0.03
60 95 0.61
61 4 0.03
62 6 0.04
ACGTcount: A:0.34, C:0.50, G:0.04, T:0.11
Consensus pattern (60 bp):
CCACCACCCACTCAAACACATCCACCACCAACACAATACCCACCACCCACTCAAGCCCAT
Found at i:8512045 original size:39 final size:39
Alignment explanation
Indices: 8512002--8512108 Score: 151
Period size: 39 Copynumber: 2.7 Consensus size: 39
8511992 CAAGCTCATC
*
8512002 CACCACCCACTGAAACACATCCACCACCAACACAATACT
1 CACCACCCACTCAAACACATCCACCACCAACACAATACT
* * **
8512041 CACCACCCACTCAAGCCCATCCACCACCAAGGCAATACT
1 CACCACCCACTCAAACACATCCACCACCAACACAATACT
* *
8512080 CGCCACCCATTCAAACACATCCACCACCA
1 CACCACCCACTCAAACACATCCACCACCA
8512109 GTGCAATCCA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.36, C:0.49, G:0.05, T:0.10
Consensus pattern (39 bp):
CACCACCCACTCAAACACATCCACCACCAACACAATACT
Found at i:8512104 original size:156 final size:156
Alignment explanation
Indices: 8511452--8512086 Score: 461
Period size: 156 Copynumber: 4.0 Consensus size: 156
8511442 AACTCAAACT
* * * * * *
8511452 CCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCACCACCCAC
1 CCACCAAGGCAATACCAGCCACCCACTCAAACACATCCACCACCAAAGCAATACCCACCACCCAC
** * *
8511517 TCAAGGC-CATCCACCACCCATTCAAACACATCCTCCACCATTA-ATGCAATACCCACCACCCAC
66 TCAA-GCTCATCCACCACCCACACAAACACACCCACCACCA--ACA--CAATACCCACCACCCAC
* *
8511580 TCAAACACATCCACCACCAACTCAAACTCCT
126 TCAAACACATCCACCACCAACGCAAACTCCG
* * * * * * *
8511611 CCACAAAGGCAATACCCGCCACCCACTCAAGCTCATTCACCACCCACTCAAGGCCAT--CCGCCA
1 CCACCAAGGCAATACCAGCCACCCACTCAAACACA-T--CCA-CCAC-CAAAGCAATACCCACCA
* * * * ** * * ** *
8511674 CCCACTCAAGTTTATCCTCCACCAAGGCAATACTC-GCCACCCACTCAAGGC--TATCCACCACC
61 CCCACTCAAGCTCATCCACCACCCACACAA-ACACACCCA-CCAC-CAACACAATACCCACCACC
* * * *
8511736 AACTC-AA-AC-TCCTCCACAAAGGCAATAC-CCG
123 CACTCAAACACATCCACCACCAACGCAA-ACTCCG
* *** * *
8511767 CCACCCACTCAAGGCCAT-CC-GCCACCCACTCAAGTTCATCCTCCACCAAGGCAATACCCACCA
1 ----CCAC-CAAGGCAATACCAGCCACCCACTCAAACACATCCACCACCAAAGCAATACCCACCA
* * * * ** *
8511830 CCCATTCAAGCTCATCCACCACCTACACAAACTCACCCTCCACCAAGGCAATGCCCACCACCCAC
61 CCCACTCAAGCTCATCCACCACCCACACAAACACACCCACCACCAACACAATACCCACCACCCAC
* *
8511895 TCAAACACATCCACCACCAACTCAAACTCCT
126 TCAAACACATCCACCACCAACGCAAACTCCG
* * *
8511926 CCACCAAGGCAATACCCGCCACCCACTCAAACACATCCACCACCAAAGCTATACCCACCACCTAC
1 CCACCAAGGCAATACCAGCCACCCACTCAAACACATCCACCACCAAAGCAATACCCACCACCCAC
** * * *
8511991 TCAAGCTCATCCACCACCCACTGAAACACATCCACCACCAACACAATACTCACCACCCACTCAAG
66 TCAAGCTCATCCACCACCCACACAAACACACCCACCACCAACACAATACCCACCACCCACTCAAA
* *
8512056 CCCATCCACCACCAAGGCAATACT-CG
131 CACATCCACCACCAACGCAA-ACTCCG
8512082 CCACC
1 CCACC
8512087 CATTCAAACA
Statistics
Matches: 379, Mismatches: 69, Indels: 59
0.75 0.14 0.12
Matches are distributed among these distances:
154 22 0.06
155 18 0.05
156 176 0.46
157 9 0.02
158 7 0.02
159 79 0.21
160 7 0.02
161 9 0.02
162 31 0.08
163 11 0.03
164 10 0.03
ACGTcount: A:0.33, C:0.47, G:0.07, T:0.13
Consensus pattern (156 bp):
CCACCAAGGCAATACCAGCCACCCACTCAAACACATCCACCACCAAAGCAATACCCACCACCCAC
TCAAGCTCATCCACCACCCACACAAACACACCCACCACCAACACAATACCCACCACCCACTCAAA
CACATCCACCACCAACGCAAACTCCG
Found at i:8512106 original size:21 final size:21
Alignment explanation
Indices: 8511944--8512107 Score: 87
Period size: 21 Copynumber: 8.2 Consensus size: 21
8511934 GCAATACCCG
8511944 CCACCCACTCAAACACATCCA
1 CCACCCACTCAAACACATCCA
* * *
8511965 CCA-CCA---AAGCTATACCCA
1 CCACCCACTCAAAC-ACATCCA
* * *
8511983 CCACCTACTCAAGCTCATCCA
1 CCACCCACTCAAACACATCCA
*
8512004 CCACCCACTGAAACACATCCA
1 CCACCCACTCAAACACATCCA
* * *
8512025 CCACCAACAC-AATAC-T-CA
1 CCACCCACTCAAACACATCCA
* *
8512043 CCACCCACTCAAGCCCATCCA
1 CCACCCACTCAAACACATCCA
* ** * *
8512064 CCACCAAGGC-AATAC-T-CG
1 CCACCCACTCAAACACATCCA
*
8512082 CCACCCATTCAAACACATCCA
1 CCACCCACTCAAACACATCCA
8512103 CCACC
1 CCACC
8512108 AGTGCAATCC
Statistics
Matches: 100, Mismatches: 32, Indels: 22
0.65 0.21 0.14
Matches are distributed among these distances:
17 3 0.03
18 26 0.26
19 10 0.10
20 11 0.11
21 46 0.46
22 4 0.04
ACGTcount: A:0.35, C:0.49, G:0.04, T:0.12
Consensus pattern (21 bp):
CCACCCACTCAAACACATCCA
Found at i:8512115 original size:39 final size:38
Alignment explanation
Indices: 8512004--8512129 Score: 144
Period size: 39 Copynumber: 3.2 Consensus size: 38
8511994 AGCTCATCCA
* ** *
8512004 CCACCCACTGAAACACATCCACCACCAACACAATACTCA
1 CCACCCACTCAAACACATCCACCACC-AGGCAATACTCG
* *
8512043 CCACCCACTCAAGCCCATCCACCACCAAGGCAATACTCG
1 CCACCCACTCAAACACATCCACCACC-AGGCAATACTCG
* * *
8512082 CCACCCATTCAAACACATCCACCACCAGTGCAATCCACG
1 CCACCCACTCAAACACATCCACCACCAG-GCAATACTCG
8512121 CCACCCACT
1 CCACCCACT
8512130 AAAGGTTGCG
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 2 0.03
39 72 0.97
ACGTcount: A:0.34, C:0.48, G:0.06, T:0.11
Consensus pattern (38 bp):
CCACCCACTCAAACACATCCACCACCAGGCAATACTCG
Found at i:8512125 original size:99 final size:96
Alignment explanation
Indices: 8511869--8512207 Score: 295
Period size: 99 Copynumber: 3.5 Consensus size: 96
8511859 AACTCACCCT
* *
8511869 CCACCAAGGCAATGCCCACCACCCACTCAAACACATCCACCACCAACT-CAA-ACTCCTCCACCA
1 CCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACC-ACTGCAACACTCCACCACCA
* * *
8511932 AGGCAATACCCGCCACCCACTCAAACACATCCA
65 A-ACAATACCCACCACCCACTCAAGCACATCCA
* * * * * *
8511965 CCACCAAAGCTATACCCACCACCTACTCAAGCTCATCCACCACCCACTGAAACACATCCACCACC
1 CCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCA-CCACTGCAACAC-TCCACCACC
* *
8512030 AACACAATACTCACCACCCACTCAAGCCCATCCA
64 AA-ACAATACCCACCACCCACTCAAGCACATCCA
* * * * *
8512064 CCACCAAGGCAATACTCGCCACCCATTCAAACACATCCACCACCAGTGCAATCCACGCCACCCAC
1 CCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCACTGCAA--CACTCCA-CCAC
* *** * ** * * * *
8512129 TAAAGGTTGCGAACCACCTACTGAAGCTCATCCT
63 CAAACAATACCCACCACCCACTCAAGCACATCCA
* * * *
8512163 CCACCGAGGCAATACTCACCTCCCACTCAAACTCATCCACCACCA
1 CCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCA
8512208 TCCCAATACT
Statistics
Matches: 195, Mismatches: 41, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
96 39 0.20
97 4 0.02
98 9 0.05
99 134 0.69
100 9 0.05
ACGTcount: A:0.34, C:0.47, G:0.07, T:0.12
Consensus pattern (96 bp):
CCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCACTGCAACACTCCACCACCAA
ACAATACCCACCACCCACTCAAGCACATCCA
Found at i:8512125 original size:138 final size:138
Alignment explanation
Indices: 8511906--8512231 Score: 358
Period size: 138 Copynumber: 2.4 Consensus size: 138
8511896 CAAACACATC
* * *
8511906 CACCACCAACTCAAA--C-TCCTCCACCAAGGCAATACCCGCCACCCACTCAAACACATCCACCA
1 CACCACCCACTCAAACCCATCCACCACCAAGGCAATACTCGCCACCCACTCAAACACATCCACCA
* * * *
8511968 CCAAAGCTATACCCACCACCTACTCAAGCTCAT-C-CACCACCCACTGAAACACATCCACCACCA
66 CCAAAGCAATACCCACCACCCACTAAAGCT--TGCGAACCACCCACTGAAACACATCCACCACCA
8512031 ACACAATACT
129 ACACAATACT
* *
8512041 CACCACCCACTCAAGCCCATCCACCACCAAGGCAATACTCGCCACCCATTCAAACACATCCACCA
1 CACCACCCACTCAAACCCATCCACCACCAAGGCAATACTCGCCACCCACTCAAACACATCCACCA
** * * * * * * *
8512106 CCAGTGCAAT-CCACGCCACCCACTAAAGGTTGCGAACCACCTACTGAAGCTCATCCTCCACCGA
66 CCAAAGCAATACC-CACCACCCACTAAAGCTTGCGAACCACCCACTGAAACACATCCACCACCAA
**
8512170 GGCAATACT
130 CACAATACT
* * ***
8512179 CACCTCCCACTCAAACTCATCCACCACCATCCCAATACTCGCCACCCACTCAA
1 CACCACCCACTCAAACCCATCCACCACCAAGGCAATACTCGCCACCCACTCAA
8512232 GGTCGTACAC
Statistics
Matches: 158, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
135 13 0.08
136 1 0.01
137 4 0.03
138 140 0.89
ACGTcount: A:0.33, C:0.47, G:0.07, T:0.13
Consensus pattern (138 bp):
CACCACCCACTCAAACCCATCCACCACCAAGGCAATACTCGCCACCCACTCAAACACATCCACCA
CCAAAGCAATACCCACCACCCACTAAAGCTTGCGAACCACCCACTGAAACACATCCACCACCAAC
ACAATACT
Found at i:8512222 original size:99 final size:99
Alignment explanation
Indices: 8512041--8512291 Score: 301
Period size: 99 Copynumber: 2.5 Consensus size: 99
8512031 ACACAATACT
* * * *
8512041 CACCACCCACTCAAGCCCATCCACCACCAAGGCAATACTCGCCACCCATTCAAACACATCCACCA
1 CACCACCTACTCAAGCTCATCCACCACCAAGGCAATACTCACCACCCACTCAAACACATCCACCA
* *
8512106 CCAGTGCAATCCACGCCACCCACTAAAGGTTGCG-A
66 CCAGTCCAATACACGCCACCCACTAAAGG-T-CGTA
* * * * *
8512141 -ACCACCTACTGAAGCTCATCCTCCACCGAGGCAATACTCACCTCCCACTCAAACTCATCCACCA
1 CACCACCTACTCAAGCTCATCCACCACCAAGGCAATACTCACCACCCACTCAAACACATCCACCA
* *
8512205 CCA-TCCCAATACTCGCCACCCACTCAAGGTCGTA
66 CCAGT-CCAATACACGCCACCCACTAAAGGTCGTA
* * * *
8512239 CACCACCTACTCAAGCTCATCCACCACCAACGCAACATTCACCGCCCACTCAA
1 CACCACCTACTCAAGCTCATCCACCACCAAGGCAATACTCACCACCCACTCAA
8512292 GGTCATACGC
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
97 2 0.02
98 3 0.02
99 123 0.96
ACGTcount: A:0.31, C:0.46, G:0.09, T:0.14
Consensus pattern (99 bp):
CACCACCTACTCAAGCTCATCCACCACCAAGGCAATACTCACCACCCACTCAAACACATCCACCA
CCAGTCCAATACACGCCACCCACTAAAGGTCGTA
Found at i:8512244 original size:21 final size:21
Alignment explanation
Indices: 8512220--8512318 Score: 78
Period size: 21 Copynumber: 4.9 Consensus size: 21
8512210 CCAATACTCG
*
8512220 CCACCCACTCAAGGTCGTACA
1 CCACCCACTCAAGGTCATACA
* * *
8512241 CCACCTACTCAAGCTCATCCA
1 CCACCCACTCAAGGTCATACA
* * *
8512262 CCACCAACGCAA---CATTCA
1 CCACCCACTCAAGGTCATACA
* *
8512280 CCGCCCACTCAAGGTCATACG
1 CCACCCACTCAAGGTCATACA
* *
8512301 CCACCTACTCAAGTTCAT
1 CCACCCACTCAAGGTCAT
8512319 CCATCACCAA
Statistics
Matches: 60, Mismatches: 15, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
18 14 0.23
21 46 0.77
ACGTcount: A:0.29, C:0.43, G:0.10, T:0.17
Consensus pattern (21 bp):
CCACCCACTCAAGGTCATACA
Found at i:8512251 original size:60 final size:60
Alignment explanation
Indices: 8512187--8512365 Score: 214
Period size: 60 Copynumber: 3.0 Consensus size: 60
8512177 CTCACCTCCC
* * * *
8512187 ACTCAAACTCATCCACCACCATCCCAATACTCGCCACCCACTCAAGGTCGTACACCACCT
1 ACTCAAGCTCATCCACCACCAACCCAATACTCGCCGCCCACTCAAGGTCATACACCACCT
* * * * *
8512247 ACTCAAGCTCATCCACCACCAACGCAACATTCACCGCCCACTCAAGGTCATACGCCACCT
1 ACTCAAGCTCATCCACCACCAACCCAATACTCGCCGCCCACTCAAGGTCATACACCACCT
* * ** * * *
8512307 ACTCAAGTTCATCCATCACCAAGTCAATACTTGCCGCCCACTCAAAGTCATCCACCACC
1 ACTCAAGCTCATCCACCACCAACCCAATACTCGCCGCCCACTCAAGGTCATACACCACC
8512366 AATGCAGTAC
Statistics
Matches: 99, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 99 1.00
ACGTcount: A:0.30, C:0.44, G:0.08, T:0.17
Consensus pattern (60 bp):
ACTCAAGCTCATCCACCACCAACCCAATACTCGCCGCCCACTCAAGGTCATACACCACCT
Found at i:8512389 original size:39 final size:40
Alignment explanation
Indices: 8512301--8512391 Score: 98
Period size: 39 Copynumber: 2.3 Consensus size: 40
8512291 AGGTCATACG
* **
8512301 CCACCTACTC-AAGTTCATCCATCACCAAGTCAATACTTG
1 CCACCTACTCAAAGTTCATCCACCACCAAGTCAATACTCA
* * *
8512340 CCGCCCACTCAAAG-TCATCCACCACCAA-TGCAGTACTCA
1 CCACCTACTCAAAGTTCATCCACCACCAAGT-CAATACTCA
8512379 CCACCTACTCAAA
1 CCACCTACTCAAA
8512392 TTATTCCGCA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.02
39 38 0.90
40 3 0.07
ACGTcount: A:0.32, C:0.41, G:0.08, T:0.20
Consensus pattern (40 bp):
CCACCTACTCAAAGTTCATCCACCACCAAGTCAATACTCA
Found at i:8515017 original size:34 final size:34
Alignment explanation
Indices: 8514974--8515041 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
8514964 CTTTTCTATG
8514974 ATATCTCTTCCACAAATGTGAAATAATTTTTTGT
1 ATATCTCTTCCACAAATGTGAAATAATTTTTTGT
8515008 ATATCTCTTCCACAAATGTGAAATAATTTTTTGT
1 ATATCTCTTCCACAAATGTGAAATAATTTTTTGT
8515042 GCGTGTTTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.44
Consensus pattern (34 bp):
ATATCTCTTCCACAAATGTGAAATAATTTTTTGT
Found at i:8540990 original size:8 final size:8
Alignment explanation
Indices: 8540977--8541003 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
8540967 TTATTTTATT
8540977 TATTTTAA
1 TATTTTAA
8540985 TATTTTAA
1 TATTTTAA
8540993 TATTTTAA
1 TATTTTAA
8541001 TAT
1 TAT
8541004 AATAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:8541187 original size:18 final size:18
Alignment explanation
Indices: 8541126--8541194 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 18
8541116 ATTTATTTTA
8541126 TAATAATATAATATCAATT
1 TAATAATA-AATATCAATT
* *
8541145 AAATAATAATTAAT-AATT
1 TAATAATAAAT-ATCAATT
*
8541163 ATAATAATAAATATCTATT
1 -TAATAATAAATATCAATT
*
8541182 TAATAACAAATAT
1 TAATAATAAATAT
8541195 ATGTATTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
18 20 0.49
19 21 0.51
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (18 bp):
TAATAATAAATATCAATT
Found at i:8541682 original size:31 final size:33
Alignment explanation
Indices: 8541647--8541753 Score: 128
Period size: 35 Copynumber: 3.2 Consensus size: 33
8541637 TGTGAAACGT
*
8541647 AACGTA-TA-ATATTAACCATACTGAGTTGTGA
1 AACGTAGTAGATATCAACCATACTGAGTTGTGA
* *
8541678 AACGTAGGTATGGTATCATCCATACTGAGTTGTGA
1 AACGTA-GTA-GATATCAACCATACTGAGTTGTGA
*
8541713 AACGTAGGTATGATATCAACCATATTGAGTTGTGA
1 AACGTA-GTA-GATATCAACCATACTGAGTTGTGA
8541748 AACGTA
1 AACGTA
8541754 AGTATGGTAT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
31 6 0.09
33 2 0.03
35 58 0.88
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (33 bp):
AACGTAGTAGATATCAACCATACTGAGTTGTGA
Found at i:8541707 original size:35 final size:35
Alignment explanation
Indices: 8541662--8541794 Score: 185
Period size: 35 Copynumber: 3.8 Consensus size: 35
8541652 ATAATATTAA
8541662 CCATACTGAGTTGTGAAACGTAGGTATGGTATCAT
1 CCATACTGAGTTGTGAAACGTAGGTATGGTATCAT
* *
8541697 CCATACTGAGTTGTGAAACGTAGGTATGATATCAA
1 CCATACTGAGTTGTGAAACGTAGGTATGGTATCAT
* * *
8541732 CCATATTGAGTTGTGAAACGTAAGTATGGTATTAT
1 CCATACTGAGTTGTGAAACGTAGGTATGGTATCAT
* ** *
8541767 TCATACTGAGTTAAGAAACATAGGTATG
1 CCATACTGAGTTGTGAAACGTAGGTATG
8541795 ACATTTCCCA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 85 1.00
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (35 bp):
CCATACTGAGTTGTGAAACGTAGGTATGGTATCAT
Found at i:8541742 original size:70 final size:70
Alignment explanation
Indices: 8541637--8541795 Score: 219
Period size: 70 Copynumber: 2.3 Consensus size: 70
8541627 AATAGCAAAG
* * * *
8541637 TGTGAAACGTAACGTATAATATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATCATCCATA
1 TGTGAAACGT-AGGTATGATATCAACCATACTGAGTTGTGAAACGTAAGTATGGTATCATCCATA
8541702 CTGAGT
65 CTGAGT
* * *
8541708 TGTGAAACGTAGGTATGATATCAACCATATTGAGTTGTGAAACGTAAGTATGGTATTATTCATAC
1 TGTGAAACGTAGGTATGATATCAACCATACTGAGTTGTGAAACGTAAGTATGGTATCATCCATAC
8541773 TGAGT
66 TGAGT
** *
8541778 TAAGAAACATAGGTATGA
1 TGTGAAACGTAGGTATGA
8541796 CATTTCCCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
70 68 0.87
71 10 0.13
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.31
Consensus pattern (70 bp):
TGTGAAACGTAGGTATGATATCAACCATACTGAGTTGTGAAACGTAAGTATGGTATCATCCATAC
TGAGT
Found at i:8541817 original size:70 final size:70
Alignment explanation
Indices: 8541673--8541834 Score: 180
Period size: 70 Copynumber: 2.3 Consensus size: 70
8541663 CATACTGAGT
* ** * * *
8541673 TGTGAAACGTAGGTATGGTATCATCCATACTGAGTTGTGAAACGTAGGTATGATATCAACCATAT
1 TGTGAAACGTAGGTATGGTATTATCCATACTGAGTTAAGAAACATAGGTATGACATCAACCATAC
* **
8541738 TGAGT
66 CGAAA
* * ***
8541743 TGTGAAACGTAAGTATGGTATTATTCATACTGAGTTAAGAAACATAGGTATGACATTTCCCATAC
1 TGTGAAACGTAGGTATGGTATTATCCATACTGAGTTAAGAAACATAGGTATGACATCAACCATAC
8541808 CGAAA
66 CGAAA
* *
8541813 TGTGAAATGCAGGTATGGTATT
1 TGTGAAACGTAGGTATGGTATT
8541835 TAAATGAGGC
Statistics
Matches: 75, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
70 75 1.00
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.31
Consensus pattern (70 bp):
TGTGAAACGTAGGTATGGTATTATCCATACTGAGTTAAGAAACATAGGTATGACATCAACCATAC
CGAAA
Found at i:8547331 original size:49 final size:49
Alignment explanation
Indices: 8547258--8547356 Score: 162
Period size: 49 Copynumber: 2.0 Consensus size: 49
8547248 TATATATTTT
* *
8547258 TATATAAATATATAATATATCTAGGGAGACTGTCGTTTATGTGTGCCAA
1 TATATAAATATATAATATACCTAGGAAGACTGTCGTTTATGTGTGCCAA
* *
8547307 TATATATATATATAATATACCTAGGAAGGCTGTCGTTTATGTGTGCCAA
1 TATATAAATATATAATATACCTAGGAAGACTGTCGTTTATGTGTGCCAA
8547356 T
1 T
8547357 TGCAATTAGA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.37
Consensus pattern (49 bp):
TATATAAATATATAATATACCTAGGAAGACTGTCGTTTATGTGTGCCAA
Found at i:8551661 original size:65 final size:66
Alignment explanation
Indices: 8551574--8551701 Score: 195
Period size: 65 Copynumber: 2.0 Consensus size: 66
8551564 TAAAAAGCGG
* *
8551574 TTTTTACATGAAAAAAAGTAATTACTAAAATAAAATAAAAACAAATTATTTACAATAATGTATCG
1 TTTTTACATGAAAAAAAGTAATTACGAAAATAAAATAAAAACAAATTATTTACAAGAATGTATCG
8551639 T
66 T
* * * *
8551640 TTTTTACATG-AAAAAATTAATTACGAAAATAAAATAAAAATAAGTTGTTTACAAGAATGTAT
1 TTTTTACATGAAAAAAAGTAATTACGAAAATAAAATAAAAACAAATTATTTACAAGAATGTAT
8551702 TATTTAAAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
65 46 0.82
66 10 0.18
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (66 bp):
TTTTTACATGAAAAAAAGTAATTACGAAAATAAAATAAAAACAAATTATTTACAAGAATGTATCG
T
Found at i:8552316 original size:24 final size:24
Alignment explanation
Indices: 8552285--8552330 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
8552275 AAAAAATTAT
8552285 AATTATAATTATAAAAATAAAAAA
1 AATTATAATTATAAAAATAAAAAA
8552309 AATTATAATTATAAAAATAAAA
1 AATTATAATTATAAAAATAAAA
8552331 CCACTCAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (24 bp):
AATTATAATTATAAAAATAAAAAA
Found at i:8552428 original size:29 final size:30
Alignment explanation
Indices: 8552402--8552455 Score: 78
Period size: 27 Copynumber: 1.9 Consensus size: 30
8552392 ACTAACTAAT
8552402 AAAATATA-AAAT-TATAT-TATAAAACTA
1 AAAATATATAAATATATATATATAAAACTA
*
8552429 AAAATATATATATATATATATATAAAA
1 AAAATATATAAATATATATATATAAAA
8552456 AGGAAGGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 8 0.35
28 3 0.13
29 5 0.22
30 7 0.30
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (30 bp):
AAAATATATAAATATATATATATAAAACTA
Found at i:8559226 original size:2 final size:2
Alignment explanation
Indices: 8559219--8559276 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
8559209 TAGTCATAGC
8559219 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8559261 CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT
8559277 TTTTCTTTTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8569036 original size:12 final size:12
Alignment explanation
Indices: 8569019--8569044 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8569009 AAATCAACTT
8569019 TAATAATGATAA
1 TAATAATGATAA
8569031 TAATAATGATAA
1 TAATAATGATAA
8569043 TA
1 TA
8569045 TAGCATAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (12 bp):
TAATAATGATAA
Found at i:8571083 original size:53 final size:51
Alignment explanation
Indices: 8571016--8571202 Score: 197
Period size: 53 Copynumber: 3.7 Consensus size: 51
8571006 ACAAGTGTGC
*
8571016 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTGTAAGACCATAGCTGGGCTATGGCATCGGTG-AATGTGATAATGTGA-T
*
8571069 CCGTGTAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTGTAAGACCATAGCTGGGCTATGGCATCGGT-GAATGTGATAATGTGA-T
* * * *
8571122 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGT--A--TGAT-ATGTGAA
1 CCGTGTAAGACCATAG-CTGGGCTATGGCATCGGTGAATGTGATAATGTGAT
* ** *
8571168 CCGTGTAAGACCATGGCAAGGCTATGGCTTCGGTG
1 CCGTGTAAGACCATAGCTGGGCTATGGCATCGGTG
8571203 TGTGATGCGT
Statistics
Matches: 119, Mismatches: 11, Indels: 14
0.83 0.08 0.10
Matches are distributed among these distances:
46 28 0.24
47 7 0.06
48 4 0.03
50 1 0.01
52 1 0.01
53 78 0.66
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (51 bp):
CCGTGTAAGACCATAGCTGGGCTATGGCATCGGTGAATGTGATAATGTGAT
Found at i:8578900 original size:48 final size:48
Alignment explanation
Indices: 8578848--8578944 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
8578838 TTGGTAATGT
8578848 ACTTGATGTAATTTTGTTGACGTTTGAGCTGATAAATCAGCTTTACCA
1 ACTTGATGTAATTTTGTTGACGTTTGAGCTGATAAATCAGCTTTACCA
8578896 ACTTGATGTAATTTTGTTGACGTTTGAGCTGATAAATCAGCTTTACCA
1 ACTTGATGTAATTTTGTTGACGTTTGAGCTGATAAATCAGCTTTACCA
8578944 A
1 A
8578945 GTGTGCAAGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (48 bp):
ACTTGATGTAATTTTGTTGACGTTTGAGCTGATAAATCAGCTTTACCA
Found at i:8582181 original size:22 final size:22
Alignment explanation
Indices: 8582154--8582195 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
8582144 CGAAAACGAG
8582154 CGATAATTTTAAATCGAGCCCT
1 CGATAATTTTAAATCGAGCCCT
8582176 CGATAATTTTAAATCGAGCC
1 CGATAATTTTAAATCGAGCC
8582196 ATAAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.31
Consensus pattern (22 bp):
CGATAATTTTAAATCGAGCCCT
Found at i:8582207 original size:22 final size:22
Alignment explanation
Indices: 8582156--8582208 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
8582146 AAAACGAGCG
* **
8582156 ATAATTTTAAATCGAGCCCTCG
1 ATAATTTTAAATCGAGCCATAA
8582178 ATAATTTTAAATCGAGCCATAA
1 ATAATTTTAAATCGAGCCATAA
*
8582200 ATATTTTTA
1 ATAATTTTA
8582209 TAAATATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (22 bp):
ATAATTTTAAATCGAGCCATAA
Found at i:8584180 original size:21 final size:21
Alignment explanation
Indices: 8584155--8584218 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
8584145 TAGCCTCCGG
8584155 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
* * *
8584176 GCTTCAG-TTAGC-C-T-CGG
1 GCTTCCGTTTAGCACTTATGT
8584193 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
8584214 GCTTC
1 GCTTC
8584219 AGTTAGCCTC
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
17 7 0.21
18 6 0.18
19 2 0.06
20 6 0.18
21 12 0.36
ACGTcount: A:0.12, C:0.27, G:0.22, T:0.39
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:8584183 original size:39 final size:39
Alignment explanation
Indices: 8584137--8584229 Score: 179
Period size: 38 Copynumber: 2.4 Consensus size: 39
8584127 GCTCTGATGA
8584137 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
8584176 GCTTCAGTTAGCCT-CGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
8584214 GCTTCAGTTAGCCTCC
1 GCTTCAGTTAGCCTCC
8584230 TAGATTTCGG
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
38 38 0.72
39 15 0.28
ACGTcount: A:0.13, C:0.29, G:0.23, T:0.35
Consensus pattern (39 bp):
GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
Found at i:8585630 original size:46 final size:46
Alignment explanation
Indices: 8585563--8585736 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
8585553 TGTAACCCGC
*
8585563 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
8585609 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
8585659 -C-TCA-CGAACTCGGACTCAACTCAACGAGTT-GGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
8585701 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
8585737 ATGCCCAAAT
Statistics
Matches: 109, Mismatches: 9, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 2 0.02
45 25 0.23
46 39 0.36
47 25 0.23
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:8585729 original size:92 final size:93
Alignment explanation
Indices: 8585571--8585741 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
8585561 GCCCATAAGT
* *
8585571 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8585636 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
8585664 GAACTCGGACTCAACTCAACGAG-TTGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8585728 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
8585742 CAAATATCCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 52 0.69
93 23 0.31
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:8587799 original size:5 final size:5
Alignment explanation
Indices: 8587789--8587816 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
8587779 AATAATTAAG
8587789 TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TAT
8587817 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:8589492 original size:39 final size:39
Alignment explanation
Indices: 8589385--8589519 Score: 125
Period size: 39 Copynumber: 3.4 Consensus size: 39
8589375 GACCTCGAGT
* *
8589385 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGA-TAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTC-GACTAG-TC
** ** *
8589426 CGATGAGGTACTGGGTACCAACT-TTACTTCGACTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGACTAGTC
8589464 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-ACTAGTC
*
8589503 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
8589520 CCATATTGGT
Statistics
Matches: 77, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
38 21 0.27
39 34 0.44
40 5 0.06
41 15 0.19
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGACTAGTC
Found at i:8595159 original size:5 final size:5
Alignment explanation
Indices: 8595123--8595184 Score: 65
Period size: 5 Copynumber: 12.0 Consensus size: 5
8595113 GATTAAAAAA
*
8595123 TATAT ATATAT TAT-T TAATAAT TA-AG TATAT TATAT TATAT TATAT
1 TATAT -TATAT TATAT T-AT-AT TATAT TATAT TATAT TATAT TATAT
8595169 TATAT TATTAT TATAT
1 TATAT TA-TAT TATAT
8595185 ATAAAGAAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
4 5 0.10
5 31 0.63
6 11 0.22
7 2 0.04
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:8597565 original size:13 final size:14
Alignment explanation
Indices: 8597549--8597584 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
8597539 CAATCTCATA
8597549 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
8597562 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
8597575 TCTC-ATTTCA
1 TCTCAATTTCA
8597585 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:8597574 original size:18 final size:19
Alignment explanation
Indices: 8597536--8597576 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
8597526 TGGTTCATGT
8597536 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
8597555 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
8597573 TTTC
1 TTTC
8597577 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:8597766 original size:39 final size:38
Alignment explanation
Indices: 8597699--8597833 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
8597689 ACCAATATGG
* * *
8597699 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
8597738 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
8597776 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
8597817 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
8597834 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:8598099 original size:18 final size:19
Alignment explanation
Indices: 8598073--8598111 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
8598063 TTTCAATTCA
8598073 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
8598092 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
8598110 AT
1 AT
8598112 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:8599429 original size:5 final size:5
Alignment explanation
Indices: 8599419--8599470 Score: 68
Period size: 5 Copynumber: 10.0 Consensus size: 5
8599409 TTACTTATTT
* *
8599419 ATATA ATATA ATATAA ATATA ATATA CTATA ATATA ATAATA ATTTA ATATA
1 ATATA ATATA ATAT-A ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA
8599471 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
5 31 0.76
6 10 0.24
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:8599443 original size:21 final size:21
Alignment explanation
Indices: 8599422--8599470 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
8599412 CTTATTTATA
8599422 TAATATAATATAA-ATATAATA
1 TAATATAATATAATA-ATAATA
* *
8599443 TACTATAATATAATAATAATT
1 TAATATAATATAATAATAATA
8599464 TAATATA
1 TAATATA
8599471 TATTTTAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
TAATATAATATAATAATAATA
Found at i:8599451 original size:26 final size:26
Alignment explanation
Indices: 8599420--8599470 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
8599410 TACTTATTTA
8599420 TATAATATAAT-ATAAATATAATATAC
1 TATAATATAATAAT-AATATAATATAC
*
8599446 TATAATATAATAATAATTTAATATA
1 TATAATATAATAATAATATAATATA
8599471 TATTTTAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (26 bp):
TATAATATAATAATAATATAATATAC
Found at i:8603978 original size:13 final size:14
Alignment explanation
Indices: 8603962--8603997 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
8603952 CAATCTCATA
8603962 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
8603975 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
8603988 TCTC-ATTTCA
1 TCTCAATTTCA
8603998 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:8603987 original size:18 final size:19
Alignment explanation
Indices: 8603949--8603989 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
8603939 TGGTTCATGT
8603949 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
8603968 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
8603986 TTTC
1 TTTC
8603990 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:8604179 original size:39 final size:38
Alignment explanation
Indices: 8604112--8604245 Score: 92
Period size: 39 Copynumber: 3.4 Consensus size: 38
8604102 ACCAATATGG
* * *
8604112 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
8604151 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
8604189 TACCCAGTACCTCATCGAATCTATCCGAA-AAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
8604229 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
8604246 ACTCGAGGTC
Statistics
Matches: 72, Mismatches: 18, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
38 20 0.28
39 33 0.46
40 19 0.26
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:8604510 original size:18 final size:19
Alignment explanation
Indices: 8604484--8604522 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
8604474 TTTCAATTCA
8604484 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
8604503 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
8604521 AT
1 AT
8604523 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:8605858 original size:5 final size:5
Alignment explanation
Indices: 8605839--8605890 Score: 68
Period size: 5 Copynumber: 10.0 Consensus size: 5
8605829 TTACTTATTT
* *
8605839 ATATA ATATA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA ATATA
1 ATATA ATATA -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA ATATA
8605891 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
5 31 0.76
6 10 0.24
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Done.