Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 221 of 335
Found at i:66322815 original size:46 final size:46
Alignment explanation
Indices: 66322762--66322937 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 46
66322752 TGGTTGAGCA
*
66322762 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAACG
*** * * * *
66322808 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAA-CTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGAAGCGA-ACG
*
66322855 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAACG
* * *
66322901 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66322938 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
46 71 0.66
47 37 0.34
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAACG
Found at i:66322918 original size:93 final size:93
Alignment explanation
Indices: 66322759--66322930 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
66322749 GGATGGTTGA
* *
66322759 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAACGCCCGAACTCGTTGAGT
66322824 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
66322852 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAACGCCCGAACTCGTTGAGT
66322917 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
66322931 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:66330366 original size:46 final size:46
Alignment explanation
Indices: 66330316--66330491 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
66330306 TGGTTGAGCA
66330316 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66330362 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
66330407 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66330455 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66330492 CGGGTTACAT
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66330472 original size:93 final size:93
Alignment explanation
Indices: 66330313--66330484 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
66330303 GGATGGTTGA
* *
66330313 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66330378 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
66330406 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66330471 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
66330485 CTTATGGCGG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66334285 original size:23 final size:22
Alignment explanation
Indices: 66334242--66334289 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
66334232 TTTCTTGCAA
66334242 TCTAACTTTATTTTTAATTTTAT
1 TCTAACTTTATTTTTAATTTT-T
**
66334265 TCTAA-TTTACTTTTTTCTTTTT
1 TCTAACTTTA-TTTTTAATTTTT
66334287 TCT
1 TCT
66334290 TTCTTCTGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.19, C:0.12, G:0.00, T:0.69
Consensus pattern (22 bp):
TCTAACTTTATTTTTAATTTTT
Found at i:66343847 original size:14 final size:13
Alignment explanation
Indices: 66343824--66343875 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
66343814 ACTCATAACT
66343824 TATATTATATACA
1 TATATTATATACA
66343837 TATACTTATATACA
1 TATA-TTATATACA
*
66343851 TTTTATTATTATAACA
1 -TATATTA-TAT-ACA
66343867 TATA-TATAT
1 TATATTATAT
66343876 TGTACATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
13 7 0.21
14 14 0.42
15 9 0.27
16 3 0.09
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (13 bp):
TATATTATATACA
Found at i:66349943 original size:29 final size:29
Alignment explanation
Indices: 66349866--66349967 Score: 132
Period size: 29 Copynumber: 3.5 Consensus size: 29
66349856 TGACGAGATC
*
66349866 GGCACTAAGTGTGCGTGCTAGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
*
66349895 GGCACTAAGTGTGCGTGCTGGAAATATTT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
66349924 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
66349953 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
66349968 AGTTCGGAGG
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:66357708 original size:29 final size:29
Alignment explanation
Indices: 66357675--66357776 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
66357665 TGACGAGATC
66357675 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
*
66357704 GGCACTAAGTGTGCGTGCTGGAAATATTT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
66357733 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
66357762 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
66357777 AGTTCGGAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:66361524 original size:27 final size:27
Alignment explanation
Indices: 66361471--66361524 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
66361461 TGTCATGTGA
* *
66361471 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
** *
66361498 AATTGAATGTTAAATTACTATTGCATG
1 AATTGAATGGCAAATTACTATTACATG
66361525 GGTTGTATGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:66362447 original size:31 final size:31
Alignment explanation
Indices: 66362409--66362472 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
66362399 CCTTTTCATA
66362409 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
66362440 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
66362471 TT
1 TT
66362473 ACTATAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:66362739 original size:23 final size:24
Alignment explanation
Indices: 66362664--66362829 Score: 266
Period size: 24 Copynumber: 7.0 Consensus size: 24
66362654 GCTTTATCGT
*
66362664 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
66362689 GTAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66362713 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66362736 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66362760 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66362783 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
66362807 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
66362830 GCACTTCCTC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.35
24 76 0.57
25 11 0.08
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:66362744 original size:47 final size:47
Alignment explanation
Indices: 66362685--66362828 Score: 270
Period size: 47 Copynumber: 3.1 Consensus size: 47
66362675 CCTAGCCTCT
* *
66362685 TTTAGTAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
66362732 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
66362779 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
66362826 TTT
1 TTT
66362829 TGCACTTCCT
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 95 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:66362904 original size:20 final size:20
Alignment explanation
Indices: 66362879--66362925 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
66362869 TTATGAATAC
66362879 ATCATGTGCATACCATACAT
1 ATCATGTGCATACCATACAT
*
66362899 ATCATGTGCATATCATACAT
1 ATCATGTGCATACCATACAT
*
66362919 ACCATGT
1 ATCATGT
66362926 TTATCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (20 bp):
ATCATGTGCATACCATACAT
Found at i:66367817 original size:93 final size:93
Alignment explanation
Indices: 66367703--66367873 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
66367693 CCCATAAGCG
* * *
66367703 AACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCATCCGTAAGTGAACTCAGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
66367767 CGAGCTCGGATGCCTAGTTACATCTCACA
65 CGAGCTCGGATGCCTAGTTACATCTCACA
* *
66367796 AACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
*
66367861 GAGTTCGGATGCC
66 GAGCTCGGATGCC
66367874 CAAATATCCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACA
Found at i:66367862 original size:46 final size:46
Alignment explanation
Indices: 66367694--66367872 Score: 188
Period size: 46 Copynumber: 3.9 Consensus size: 46
66367684 TGTAACCCGC
* *
66367694 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGATGCTCGCAT
* * *
66367740 CCGTAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CTCG---CAT
* * *
66367790 CTCA-CA---AACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
*
66367833 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC
66367873 CCAAATATCC
Statistics
Matches: 110, Mismatches: 13, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 2 0.02
46 66 0.60
47 29 0.26
50 5 0.05
51 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCAT
Found at i:66373095 original size:31 final size:31
Alignment explanation
Indices: 66373057--66373120 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
66373047 CCTTTTCATA
66373057 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
66373088 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
66373119 TT
1 TT
66373121 ATTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:66373359 original size:24 final size:24
Alignment explanation
Indices: 66373326--66373500 Score: 293
Period size: 24 Copynumber: 7.4 Consensus size: 24
66373316 TTGGAAGCCT
* *
66373326 AGCCTCTTTTAGTAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
66373351 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
66373375 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
66373398 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
66373422 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
66373445 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
66373468 AGCCCTTTTAATAACTCGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
66373492 AGCCCTTTT
1 AGCCCTTTT
66373501 GCACTTCCTC
Statistics
Matches: 145, Mismatches: 3, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
23 69 0.48
24 72 0.50
25 4 0.03
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:66373387 original size:23 final size:23
Alignment explanation
Indices: 66373333--66373499 Score: 280
Period size: 23 Copynumber: 7.1 Consensus size: 23
66373323 CCTAGCCTCT
* *
66373333 TTTAGTAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
66373356 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
66373380 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
66373403 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
66373427 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
66373450 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
66373473 TTTTAATAACTCGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
66373497 TTT
1 TTT
66373500 TGCACTTCCT
Statistics
Matches: 138, Mismatches: 3, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
23 72 0.52
24 66 0.48
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:66373407 original size:47 final size:47
Alignment explanation
Indices: 66373333--66373500 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
66373323 CCTAGCCTCT
* *
66373333 TTTAGTAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
66373380 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
66373427 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
66373473 TTTTAATAACTCGGGCATAAGCCCTTTT
1 -TTTAATAACTGGGGCATAAGCCCTTTT
66373501 GCACTTCCTC
Statistics
Matches: 116, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
46 23 0.20
47 90 0.78
48 3 0.03
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:66373575 original size:20 final size:20
Alignment explanation
Indices: 66373550--66373610 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
66373540 TTATGAATAC
66373550 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
66373570 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66373590 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
66373610 A
1 A
66373611 CCATTTTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:66373581 original size:11 final size:11
Alignment explanation
Indices: 66373550--66373605 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
66373540 TTATGAATAC
66373550 ATCATGTGCAT
1 ATCATGTGCAT
*
66373561 ATCA--TACAT
1 ATCATGTGCAT
66373570 ATCATGTGCAT
1 ATCATGTGCAT
*
66373581 ATCA--TACAT
1 ATCATGTGCAT
*
66373590 GTCATGTGCAT
1 ATCATGTGCAT
66373601 ATCAT
1 ATCAT
66373606 ACATACCATT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:66373692 original size:25 final size:25
Alignment explanation
Indices: 66373653--66373700 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
66373643 ATATTTAAAC
* *
66373653 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
66373678 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
66373701 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:66378690 original size:46 final size:46
Alignment explanation
Indices: 66378623--66378752 Score: 215
Period size: 46 Copynumber: 2.8 Consensus size: 46
66378613 ATGTAACCCG
* * * *
66378623 TCCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
66378669 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
*
66378715 TCCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
66378753 TGCCCGAATA
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
Found at i:66383368 original size:27 final size:27
Alignment explanation
Indices: 66383327--66383380 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
66383317 TGTCATGTGA
* *
66383327 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
66383354 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
66383381 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:66385392 original size:40 final size:39
Alignment explanation
Indices: 66385347--66385554 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
66385337 CGGAATACGA
*
66385347 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
66385387 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
66385427 CCGGATTTAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* ** * *
66385467 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * * *
66385507 CCGGATATAATTACCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCA-CTGCACAAATGCCTTCGGGTCTTAGC
66385547 CCGGATAT
1 CCGGATAT
66385555 CATTCAATTG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:66385487 original size:80 final size:81
Alignment explanation
Indices: 66385347--66385552 Score: 233
Period size: 80 Copynumber: 2.6 Consensus size: 81
66385337 CGGAATACGA
* *
66385347 CCGGATATAACCA-CATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAA
1 CCGGATATAACAACCA-GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAA
*
66385410 TGCCTTCGGGTATTAGC
65 TGCCTTCGGGTATTAAC
* *
66385427 CCGGATTTAACAACTC-GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAA
1 CCGGATATAACAAC-CAGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAA
* *
66385489 TTGCCTTCGGGTCTTAAC
64 ATGCCTTCGGGTATTAAC
** ** * *
66385507 CCGGATATAATTACCAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACCAGCACGAATGCCTTCGGGTCTTAGCCCGGAT
66385553 ATCATTCAAT
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
79 1 0.01
80 101 0.94
81 1 0.01
82 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACCAGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:66392770 original size:26 final size:26
Alignment explanation
Indices: 66392741--66392791 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
66392731 AATAAAAGAA
66392741 AACATTCAATATTTCTA-TTTAATTAG
1 AACATTCAATATTTC-AGTTTAATTAG
*
66392767 AACATTCGATATTTCAGTTTAATTA
1 AACATTCAATATTTCAGTTTAATTA
66392792 ACATTAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAGTTTAATTAG
Found at i:66395261 original size:48 final size:47
Alignment explanation
Indices: 66395108--66395361 Score: 151
Period size: 47 Copynumber: 5.4 Consensus size: 47
66395098 ATTGAGGGTT
** * *
66395108 AAGGATACCATGTAAGACCATGTCAAG-ACATGACATTGG-TAAGGC
1 AAGGATACCATGTAAGACCACATCAAGAACATGGCATTGGATAAGAC
* * * * ** * * * *
66395153 AAGGATCCCGTGTAACACTATGTAAAG-ACATGGCATCGGCAT-TGATT
1 AAGGATACCATGTAAGACCACATCAAGAACATGGCATTGG-ATAAGA-C
*
66395200 AAGGACT-CCATGTAAGACCACATCAAG-ATATGGCATTGGCACTAAGAC
1 AAGGA-TACCATGTAAGACCACATCAAGAACATGGCATTGG-A-TAAGAC
** *** *
66395248 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGATAAGAC
1 AAGGATACCATGTAAGACCACATCAAGAACATGGCATTGGATAAGAC
** *** * * *
66395295 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGTTAAGAT
1 AAGGATACCATGTAAGACCACATCAAGAACATGGCATTGGATAAGAC
*
66395342 AAGGATATCATGTAAGACCA
1 AAGGATACCATGTAAGACCA
66395362 TGCCAAGACA
Statistics
Matches: 171, Mismatches: 30, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
45 32 0.19
46 1 0.01
47 103 0.60
48 23 0.13
49 12 0.07
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (47 bp):
AAGGATACCATGTAAGACCACATCAAGAACATGGCATTGGATAAGAC
Found at i:66395301 original size:47 final size:47
Alignment explanation
Indices: 66395242--66395363 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
66395232 GCATTGGCAC
66395242 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGA
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGA
*
66395289 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGT
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGA
* *
66395336 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
66395364 CCAAGACATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGA
Found at i:66395471 original size:55 final size:54
Alignment explanation
Indices: 66395342--66395538 Score: 238
Period size: 54 Copynumber: 3.6 Consensus size: 54
66395332 TTGTTAAGAT
* * *
66395342 AAGGATATCATGTAAGACCATGCCAAGACATGGCAGTGATAAGTTCTATAAGGC
1 AAGGATCTCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
** *
66395396 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATCTCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
66395451 AAAGG-TCTTATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGT
1 -AAGGATCTCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
66395504 AAGGATAC-CACGTAAGACCATGTCAAGACATGGCA
1 AAGGAT-CTCATGTAAGACCATGCCAAGACATGGCA
66395539 ATGGTAAGTT
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
52 4 0.03
53 30 0.24
54 43 0.35
55 43 0.35
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATCTCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:66397230 original size:24 final size:24
Alignment explanation
Indices: 66397203--66397248 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
66397193 AATTTACGGA
66397203 ATTGATGATGAATTTGA-GATTTCC
1 ATTGATGAT-AATTTGATGATTTCC
*
66397227 ATTGTTGATAATTTGATGATTT
1 ATTGATGATAATTTGATGATTT
66397249 TTTGTTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.28, C:0.04, G:0.20, T:0.48
Consensus pattern (24 bp):
ATTGATGATAATTTGATGATTTCC
Found at i:66399884 original size:70 final size:71
Alignment explanation
Indices: 66399801--66399963 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
66399791 CGATTTGTCT
66399801 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66399865 CTTTCA
66 CTTTCA
*
66399871 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66399936 CTTTCA
66 CTTTCA
66399942 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
66399964 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:66400001 original size:71 final size:70
Alignment explanation
Indices: 66399801--66399997 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
66399791 CGATTTGTCT
* * * *
66399801 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
66399865 CTTTCA
65 CTTTCA
* * * *
66399871 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
66399936 CTTTCA
65 CTTTCA
* *
66399942 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
66399998 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:66407413 original size:70 final size:71
Alignment explanation
Indices: 66407330--66407492 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
66407320 CGATTTGTCT
66407330 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66407394 CTTTCA
66 CTTTCA
*
66407400 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66407465 CTTTCA
66 CTTTCA
66407471 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
66407493 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:66407530 original size:71 final size:70
Alignment explanation
Indices: 66407330--66407526 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
66407320 CGATTTGTCT
* * * *
66407330 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
66407394 CTTTCA
65 CTTTCA
* * * *
66407400 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
66407465 CTTTCA
65 CTTTCA
* *
66407471 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
66407527 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:66420512 original size:33 final size:33
Alignment explanation
Indices: 66420470--66420541 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
66420460 TTTTGCATCT
* *
66420470 CTGATACTG-TAC-TGAATTGGGCTTAGGCCCACA
1 CTGATACTGTTACGT-AA-TGGGCTAAGGACCACA
66420503 CTGATACTGTTACGTAATGGGCTAAGGACCACA
1 CTGATACTGTTACGTAATGGGCTAAGGACCACA
66420536 CTGATA
1 CTGATA
66420542 TTGCCACTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 29 0.83
34 5 0.14
35 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (33 bp):
CTGATACTGTTACGTAATGGGCTAAGGACCACA
Found at i:66427892 original size:40 final size:39
Alignment explanation
Indices: 66427815--66427997 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 39
66427805 TCGAATGATG
* *
66427815 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
66427854 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
66427894 TCCGGGCTAAGCCCGAAGGCA-TGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
66427932 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
66427973 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
66427998 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
38 24 0.19
39 28 0.23
40 63 0.51
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:66427954 original size:78 final size:79
Alignment explanation
Indices: 66427815--66427994 Score: 222
Period size: 78 Copynumber: 2.3 Consensus size: 79
66427805 TCGAATGATG
* * *
66427815 TCCGGGCTAAGTCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
66427880 TGCGAGTTACTA-A
66 TGCGAGTTACTATA
* * * **
66427893 TTCCGGGCTAAGCCCGAAGGCATGGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 -TCCGGGCTAAGCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
66427956 TGTGCGAGTTACTATA
64 TGTGCGAGTTACTATA
* *
66427972 ACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCAT
66427995 TTGAACGAGT
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
77 1 0.01
78 51 0.58
79 36 0.41
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATA
Found at i:66431576 original size:33 final size:34
Alignment explanation
Indices: 66431534--66431606 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
66431524 GTTTGCATCT
66431534 CTGATACTG-TACTG-AATTGGGCTT-AGGCCCACA
1 CTGATACTGTTACTGTAA-TGGG-TTAAGGCCCACA
*
66431567 CTGATACTGTTACTGTAATGGGTTAAGGTCCACA
1 CTGATACTGTTACTGTAATGGGTTAAGGCCCACA
66431601 CTGATA
1 CTGATA
66431607 TTGCCACTGA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
33 11 0.31
34 23 0.64
35 2 0.06
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (34 bp):
CTGATACTGTTACTGTAATGGGTTAAGGCCCACA
Found at i:66439154 original size:22 final size:22
Alignment explanation
Indices: 66439126--66439171 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
66439116 TACGAAATAA
66439126 ACATTAAGGCTAGCCATACTGC
1 ACATTAAGGCTAGCCATACTGC
66439148 ACATTAAGGCTAGCCATACTGC
1 ACATTAAGGCTAGCCATACTGC
66439170 AC
1 AC
66439172 GAATCTGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (22 bp):
ACATTAAGGCTAGCCATACTGC
Found at i:66442117 original size:29 final size:28
Alignment explanation
Indices: 66442050--66442135 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
66442040 TACATGTATT
* * *
66442050 TGGCCCATTAAGCCCATTCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
66442078 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
66442107 TGGCTCGTTAGGCCCAATCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
66442135 T
1 T
66442136 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 27 0.54
29 23 0.46
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:66444529 original size:40 final size:40
Alignment explanation
Indices: 66444444--66444594 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
66444434 AATTGAATGA
* * *
66444444 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
66444484 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
66444525 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
66444564 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
66444595 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:66444608 original size:40 final size:40
Alignment explanation
Indices: 66444480--66444610 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
66444470 TATGCTGGAA
* * *
66444480 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
66444520 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
66444560 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
66444600 ATTATATCCGG
1 ATTATATCCGG
66444611 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:66451841 original size:40 final size:40
Alignment explanation
Indices: 66451756--66451906 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
66451746 AATTGAATGA
* * *
66451756 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
66451796 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
66451837 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
66451876 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
66451907 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:66451920 original size:40 final size:40
Alignment explanation
Indices: 66451792--66451922 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
66451782 TATGCTGGAA
* * *
66451792 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
66451832 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
66451872 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
66451912 ATTATATCCGG
1 ATTATATCCGG
66451923 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:66462726 original size:40 final size:39
Alignment explanation
Indices: 66462669--66462820 Score: 130
Period size: 40 Copynumber: 3.8 Consensus size: 39
66462659 CGGAGTTTAA
* * * *
66462669 CCGGATATAGCTACTCGTTCAAATACCTTCGGGACATAGC
1 CCGGTTATAG-TACTCGTACAAATGCCTTCGGGACATAAC
*
66462709 CCGGTTATAGTAGCTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGTTATAGTA-CTCGTACAAATGCCTTCGGGACATAAC
* * **
66462749 CCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGG-TTATAGT-ACTCGTACAAATGCCTTCGGGA-CATAAC
*
66462789 CCGGATT-TAGTAACTCGCACAAATGCCTTCGG
1 CCGG-TTATAGT-ACTCGTACAAATGCCTTCGG
66462821 ATCTTAGTCC
Statistics
Matches: 99, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
39 5 0.05
40 90 0.91
41 4 0.04
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (39 bp):
CCGGTTATAGTACTCGTACAAATGCCTTCGGGACATAAC
Found at i:66462821 original size:40 final size:40
Alignment explanation
Indices: 66462688--66462873 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
66462678 GCTACTCGTT
* * * * *
66462688 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGTA
1 CAAATGCCTTCAGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
66462728 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCAGGACTTAGCCCGGATTTAGTAACTCGCA
*
66462768 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCAGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
66462808 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCAGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
66462849 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCAGGACTTAGCCCGGA
66462874 CATCATTCGA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCAGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:66465398 original size:20 final size:19
Alignment explanation
Indices: 66465355--66465398 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
66465345 ACTGTTTTGT
66465355 TATGGGCCAACTATATTAA
1 TATGGGCCAACTATATTAA
* * *
66465374 AATGGGCCCAACTGTGTTAA
1 TATGGG-CCAACTATATTAA
66465394 TATGG
1 TATGG
66465399 TCAAGGCCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (19 bp):
TATGGGCCAACTATATTAA
Found at i:66467709 original size:48 final size:48
Alignment explanation
Indices: 66467634--66467861 Score: 223
Period size: 48 Copynumber: 4.9 Consensus size: 48
66467624 CACATGGTAG
* * ** *
66467634 GATGTCAATGCCATATCCCGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
* ** *
66467682 GATGCCAATGCCATGTCCTAGACATGGTCTTATATGGGATCGTAGATC
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
* *
66467730 GATGCCAATTCCATGTCCTAGACATGGTCTTACATGGGATCACATATT
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
* * ** * * ** * *
66467778 GATGCCGAT---A-G-CCCAGGTATGGACTTACACGAAATTACATATT
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
*
66467821 GATGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATC
66467862 GCACATAACC
Statistics
Matches: 141, Mismatches: 34, Indels: 10
0.76 0.18 0.05
Matches are distributed among these distances:
43 31 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 106 0.75
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
Found at i:66477614 original size:18 final size:18
Alignment explanation
Indices: 66477591--66477625 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
66477581 ACACGAACTT
66477591 ACTTACCACCTTGCGCTA
1 ACTTACCACCTTGCGCTA
66477609 ACTTACCACCTTGCGCT
1 ACTTACCACCTTGCGCT
66477626 GCTAGATCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.20, C:0.40, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTTACCACCTTGCGCTA
Found at i:66487724 original size:40 final size:39
Alignment explanation
Indices: 66487613--66487763 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
66487603 TATAACATGT
* ** *
66487613 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
*
66487653 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *** *
66487693 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *
66487733 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
66487764 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:66487747 original size:80 final size:79
Alignment explanation
Indices: 66487613--66487763 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
66487603 TATAACATGT
*
66487613 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGG-CTTAGCC
66487678 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
66487693 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGCTTAGC
66487756 CCGGATAT
64 CCGGATAT
66487764 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:66494887 original size:5 final size:5
Alignment explanation
Indices: 66494879--66494912 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
66494869 ACAAAAACAA
*
66494879 AAAAT AAAAT AAAAT AAAAT CAAAT AATAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AAA
66494913 TTTAATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:66496701 original size:166 final size:165
Alignment explanation
Indices: 66496414--66496739 Score: 472
Period size: 166 Copynumber: 2.0 Consensus size: 165
66496404 GAGTATATCA
* * * * *
66496414 ACATATGTTGTGGTACTTGACAGCTTGTGTGAGCAACACCGAGTAGCTATGTCGTGACTGATAGC
1 ACATATGTTGAGGTACTTGACAGCTTATGTGAACAACACCGAGTAGCTACGTCGTGACTGACAGC
* *
66496479 TTGTGTGAGCAGGCCCGTTAATGGCTCGAGAGTGAGCATATATGTGTTATGAGATAGAGGTAGCA
66 TTATGTGAGCAGGCCCGTTAATGGCTCGAGAGCGAGCATATATGTGTTATGAGATAGAGGTAGCA
**
66496544 ATGGCTACATATGTGGTACCTTGTGTGCAATGGCT
131 ATGGCTACATATGTGACACCTTGTGTGCAATGGCT
* * * * *
66496579 ACATATGTTGCAGTTACTTGACAGCTTATGTGAATAGCACCGTGTAGCTACGTCTTGACTGACAG
1 ACATATGTTG-AGGTACTTGACAGCTTATGTGAACAACACCGAGTAGCTACGTCGTGACTGACAG
* * * *
66496644 CTTATGTGAGTAGGCCTGTTGATGGCTTGAGAGCGAGCATATATGTGTTATGAGATAGAGGTAGC
65 CTTATGTGAGCAGGCCCGTTAATGGCTCGAGAGCGAGCATATATGTGTTATGAGATAGAGGTAGC
*
66496709 AATGGCTACATATTTGACACCTTGTGTGCAA
130 AATGGCTACATATGTGACACCTTGTGTGCAA
66496740 CGTTTCCCAA
Statistics
Matches: 141, Mismatches: 19, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
165 10 0.07
166 131 0.93
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (165 bp):
ACATATGTTGAGGTACTTGACAGCTTATGTGAACAACACCGAGTAGCTACGTCGTGACTGACAGC
TTATGTGAGCAGGCCCGTTAATGGCTCGAGAGCGAGCATATATGTGTTATGAGATAGAGGTAGCA
ATGGCTACATATGTGACACCTTGTGTGCAATGGCT
Found at i:66498273 original size:80 final size:77
Alignment explanation
Indices: 66498168--66498375 Score: 296
Period size: 80 Copynumber: 2.7 Consensus size: 77
66498158 TCTTCGGAAT
* *
66498168 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATA--AACTCGCAC
66498232 AAATGCCTTCGGGTC
63 AAATGCCTTCGGGTC
* *
66498247 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAAACTCGCACAA
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAAACTCGCACAA
66498312 ATGCCTTCGGGTC
65 ATGCCTTCGGGTC
* *
66498325 TTA-CCCGGATATAATCACTAGCATAAATGCCTTCGGG-CTTAGCCCGGGTAT
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
66498376 CATTCAATGC
Statistics
Matches: 118, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
76 12 0.10
77 30 0.25
78 28 0.24
79 5 0.04
80 43 0.36
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (77 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAAACTCGCACAAA
TGCCTTCGGGTC
Found at i:66498314 original size:38 final size:39
Alignment explanation
Indices: 66498188--66498371 Score: 250
Period size: 40 Copynumber: 4.7 Consensus size: 39
66498178 ATAACCACAA
* *
66498188 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATA-CAACTC
*
66498228 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-ACAACTC
66498268 GCACAAATGCCTTCGGGTCTTAACCCGGATATA-AACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATACAACTC
*
66498306 GCACAAATGCCTTCGGGTCTT-ACCCGGATATA-ATCACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATACA--ACTC
* *
66498345 GCATAAATGCCTTCGGG-CTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
66498372 GTATCATTCA
Statistics
Matches: 133, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
37 12 0.09
38 29 0.22
39 25 0.19
40 66 0.50
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATACAACTC
Found at i:66506302 original size:40 final size:40
Alignment explanation
Indices: 66506257--66506442 Score: 232
Period size: 40 Copynumber: 4.7 Consensus size: 40
66506247 ATAACCACAA
* *
66506257 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
** *
66506297 GCACAAATGCCTTCGGGTCTTTGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
66506337 GCACAAATGCCTTAGGGTCTTAACCCGGATATAGAAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * *
66506377 GCAAAAATGCCTTCGGGTCTT-ACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
66506416 GCATAAATGCCTTCGGGGCTTAGCCCG
1 GCACAAATGCCTTCGGGTCTTAACCCG
66506443 AGTATCATTC
Statistics
Matches: 126, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 32 0.25
40 94 0.75
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:66506376 original size:80 final size:78
Alignment explanation
Indices: 66506241--66506442 Score: 269
Period size: 80 Copynumber: 2.5 Consensus size: 78
66506231 CGGAATTTAG
* * * * *
66506241 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGAAACTCGCAAAAATG
*
66506306 CCTTCGGGTCTTTGC
65 CCTTCGGGTC-TTAC
* *
66506321 CCGGATATAACAACTCGCACAAATGCCTTAGGGTCTTAACCCGGATATAGAAACTCGCAAAAATG
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGAAACTCGCAAAAATG
66506386 CCTTCGGGTCTTAC
65 CCTTCGGGTCTTAC
* * *
66506400 CCGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCG
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCG
66506443 AGTATCATTC
Statistics
Matches: 107, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 40 0.37
80 67 0.63
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (78 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGAAACTCGCAAAAATGC
CTTCGGGTCTTAC
Found at i:66511528 original size:51 final size:51
Alignment explanation
Indices: 66511453--66511639 Score: 136
Period size: 51 Copynumber: 3.7 Consensus size: 51
66511443 CTACCTGCTT
* * * * * **
66511453 CACAAAGTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCT-TTTA
1 CACATAGTGACCTACACTTAGTACCACACATGTGACCAAAGCTAT-TGGGTA
* *
66511504 CACATAGTGACCTACACTTAGTACCACACATGTGATCGAAGCTATTGGGTA
1 CACATAGTGACCTACACTTAGTACCACACATGTGACCAAAGCTATTGGGTA
* * * * *
66511555 CACATAGT-AGCCTGCACTTAGTACTACAC--GCGACCTAA-CGATCT-GGTA
1 CACATAGTGA-CCTACACTTAGTACCACACATGTGACCAAAGCTAT-TGGGTA
* * *
66511603 CACGTAGT-AGCCTGCACTTAGTACTACACATGTGACC
1 CACATAGTGA-CCTACACTTAGTACCACACATGTGACC
66511640 TAAAACCATT
Statistics
Matches: 114, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
48 35 0.31
49 7 0.06
50 7 0.06
51 65 0.57
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (51 bp):
CACATAGTGACCTACACTTAGTACCACACATGTGACCAAAGCTATTGGGTA
Found at i:66516408 original size:42 final size:42
Alignment explanation
Indices: 66516361--66516444 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
66516351 CAATAAGTAC
* * *
66516361 AGTTTATTCTTTAAAATTACTATTGTTTCACTGTCCAATAGT
1 AGTTTAATCTTTAAAATCACCATTGTTTCACTGTCCAATAGT
*
66516403 AGTTTAATCTTTAAGATCACCATTGTTTCACTGTCCAATAGT
1 AGTTTAATCTTTAAAATCACCATTGTTTCACTGTCCAATAGT
66516445 TCCGACCCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.44
Consensus pattern (42 bp):
AGTTTAATCTTTAAAATCACCATTGTTTCACTGTCCAATAGT
Found at i:66517162 original size:51 final size:51
Alignment explanation
Indices: 66517052--66517151 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
66517042 TCTTGTAGTC
* * *
66517052 AAAGCTACCTTTTTCACAAAGTGGCCGTCACATAGTACCACACTTGTGACT
1 AAAGCTATCTTTTACACAAAGTGGCCGTCACATAGTACCACACATGTGACT
* * *
66517103 AAAGCTATCTTTTACACATAGTGG-CATGCACTTAGTACCACACATGTGA
1 AAAGCTATCTTTTACACAAAGTGGCCGT-CACATAGTACCACACATGTGA
66517152 TCGAAGCTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.05
51 40 0.95
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (51 bp):
AAAGCTATCTTTTACACAAAGTGGCCGTCACATAGTACCACACATGTGACT
Found at i:66518460 original size:47 final size:47
Alignment explanation
Indices: 66518350--66518578 Score: 231
Period size: 47 Copynumber: 4.8 Consensus size: 47
66518340 TCATTTGTGC
*
66518350 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCACATT-ACG--AGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCA-T--CGACATTGA-GATAGA
* * *
66518396 GCCAGTGTAAAACCATGTTTGGGACATGGCATCGACATTGAGATAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAT-AGA
* ** *
66518444 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCACGGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGA--T-AGA
66518493 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATTGAT-GA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGA--GATAGA
*
66518540 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATT
66518579 ATACCCTATG
Statistics
Matches: 154, Mismatches: 17, Indels: 22
0.80 0.09 0.11
Matches are distributed among these distances:
45 7 0.05
46 11 0.07
47 76 0.49
48 18 0.12
49 19 0.12
50 22 0.14
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATAGA
Found at i:66518518 original size:97 final size:92
Alignment explanation
Indices: 66518350--66518576 Score: 305
Period size: 97 Copynumber: 2.4 Consensus size: 92
66518340 TCATTTGTGC
*
66518350 GCTAGTGTAAGACATGTCTGGGACAT-GCATTGGCCACATTACGAGAGCCAGTGTAAAACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGG-CACATTACGAGAGCCAGTGTAAAACCATGT
*
66518414 TTGGGACATGGCATCGACATTGA-GATAAGA
65 CTGGGACATGGCATCGAC-TTGATGAT--GA
** * *
66518444 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGCTAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCAC--AT-TACGAGAGCCAGTGTAAAACCAT
66518509 GTCTGGGACATGGCATCGACTTGATTGATGA
63 GTCTGGGACATGGCATCGACTTGA-TGATGA
66518540 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCA
66518577 TTATACCCTA
Statistics
Matches: 120, Mismatches: 6, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
94 29 0.24
95 6 0.05
96 20 0.17
97 62 0.52
98 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCACATTACGAGAGCCAGTGTAAAACCATGTC
TGGGACATGGCATCGACTTGATGATGA
Found at i:66521435 original size:28 final size:28
Alignment explanation
Indices: 66521382--66521435 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
66521372 ACTTGTTTGG
* * *
66521382 AGTGAATTATGTAATTATGATGATATTA
1 AGTGAATGATGTAATTATAATCATATTA
66521410 AGTGAATGATG-AATTATAAGTCATAT
1 AGTGAATGATGTAATTATAA-TCATAT
66521436 GTGCGTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.41, C:0.02, G:0.19, T:0.39
Consensus pattern (28 bp):
AGTGAATGATGTAATTATAATCATATTA
Found at i:66527074 original size:46 final size:46
Alignment explanation
Indices: 66527004--66527192 Score: 306
Period size: 46 Copynumber: 4.1 Consensus size: 46
66526994 TATGAGTGTT
*
66527004 AGATGGATATGAGGTAAAGACGAATGGCTAATGCGAAACGTGTATG
1 AGATGGATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATG
66527050 AGATGGATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATG
1 AGATGGATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATG
*
66527096 AGATAGATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATG
1 AGATGGATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATG
* * * * **
66527142 AGATGGATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATG
1 AGATGGATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATG
66527188 AGATG
1 AGATG
66527193 TGTATATATA
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 134 1.00
ACGTcount: A:0.36, C:0.09, G:0.32, T:0.23
Consensus pattern (46 bp):
AGATGGATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATG
Found at i:66529143 original size:43 final size:44
Alignment explanation
Indices: 66529081--66529231 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 44
66529071 GATTGCCAAG
* * *
66529081 ATGTGATTACATGTAAGACCATCTCTGGGACAGTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACAGTGGCATCGTAT
** * *
66529125 -TGTGATTATGTGTAAGACCATGTATAGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTAGGACAGTGGCATCGTAT
* *** * *
66529167 ATATGATTTTGTGTAAGACCCTGTCTAGGATAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTAGGACAGTGGCATCGTAT
*
66529210 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
66529232 ACCCGGGATA
Statistics
Matches: 86, Mismatches: 19, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
42 1 0.01
43 85 0.99
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTAGGACAGTGGCATCGTAT
Found at i:66530048 original size:11 final size:11
Alignment explanation
Indices: 66530005--66530047 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 11
66529995 ATGTAAGTTG
66530005 ATGATTTTGGCAT
1 ATGATTTTGG--T
*
66530018 ATTATTTTGGT
1 ATGATTTTGGT
66530029 ATGATTTTGGT
1 ATGATTTTGGT
66530040 ATGGATTT
1 AT-GATTT
66530048 GTGTAGTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
11 13 0.48
12 5 0.19
13 9 0.33
ACGTcount: A:0.21, C:0.02, G:0.23, T:0.53
Consensus pattern (11 bp):
ATGATTTTGGT
Found at i:66533426 original size:27 final size:28
Alignment explanation
Indices: 66533370--66533439 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
66533360 AAATTTGTAC
66533370 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
66533398 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
66533425 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
66533440 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:66533450 original size:27 final size:27
Alignment explanation
Indices: 66533370--66533451 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
66533360 AAATTTGTAC
* *
66533370 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
66533398 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
66533425 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
66533452 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:66538687 original size:40 final size:40
Alignment explanation
Indices: 66538602--66538752 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
66538592 AATTGAATGA
* * *
66538602 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
66538642 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
66538683 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
66538722 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
66538753 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:66538766 original size:40 final size:40
Alignment explanation
Indices: 66538639--66538768 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
66538629 ATGCTGGAAA
* * * *
66538639 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
66538679 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
66538719 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
66538759 TTATATCCGG
1 TTATATCCGG
66538769 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:66542258 original size:43 final size:43
Alignment explanation
Indices: 66542139--66542263 Score: 130
Period size: 43 Copynumber: 2.9 Consensus size: 43
66542129 GGATTAATGA
* * *
66542139 TATGTGATTATGTATAAGACCATGTCTGGGAAATTGGCATCAT
1 TATGTAATTATGTGTAAGACCATGTCTGGGATATTGGCATCAT
* * * * *
66542182 TATGTGATTATTTGTAAGACCATGTATGAGATATTGGCATCGT
1 TATGTAATTATGTGTAAGACCATGTCTGGGATATTGGCATCAT
*
66542225 TAAT-TAATT-TCGTGTAAGACCATATCTGGGATA-TGGCAT
1 T-ATGTAATTAT-GTGTAAGACCATGTCTGGGATATTGGCAT
66542264 TGTACAAGCT
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 7 0.10
43 60 0.87
44 2 0.03
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (43 bp):
TATGTAATTATGTGTAAGACCATGTCTGGGATATTGGCATCAT
Found at i:66543923 original size:12 final size:12
Alignment explanation
Indices: 66543906--66543930 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
66543896 CACACACGCC
66543906 CGTGTGCTAGGT
1 CGTGTGCTAGGT
66543918 CGTGTGCTAGGT
1 CGTGTGCTAGGT
66543930 C
1 C
66543931 ATACCAAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.20, G:0.40, T:0.32
Consensus pattern (12 bp):
CGTGTGCTAGGT
Found at i:66544329 original size:16 final size:16
Alignment explanation
Indices: 66544303--66544345 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
66544293 TTTAGTTCAT
*
66544303 ACCAAATATCAATAATG
1 ACCAAACATCAA-AATG
*
66544320 -TCAAACATCAAAATG
1 ACCAAACATCAAAATG
66544335 ACCAAACATCA
1 ACCAAACATCA
66544346 TTTAAACCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.53, C:0.23, G:0.05, T:0.19
Consensus pattern (16 bp):
ACCAAACATCAAAATG
Found at i:66550249 original size:34 final size:34
Alignment explanation
Indices: 66550195--66550295 Score: 139
Period size: 34 Copynumber: 3.0 Consensus size: 34
66550185 ATATGCTAAG
* *
66550195 GGGCCCAGGCCCAGACTGCTACTATTACTGAAAC
1 GGGCTCAGGCCCAGATTGCTACTATTACTGAAAC
* *
66550229 GGGCTTAGGCCCAGATTGCTACTGTTACTGAAAC
1 GGGCTCAGGCCCAGATTGCTACTATTACTGAAAC
* * *
66550263 GGGCTCAGGCCCAGATTGTTATTATTATTGAAA
1 GGGCTCAGGCCCAGATTGCTACTATTACTGAAA
66550296 TAGAATAAGG
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 58 1.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (34 bp):
GGGCTCAGGCCCAGATTGCTACTATTACTGAAAC
Found at i:66553115 original size:48 final size:48
Alignment explanation
Indices: 66553057--66553158 Score: 134
Period size: 48 Copynumber: 2.1 Consensus size: 48
66553047 TTGGGCTATC
* * *
66553057 GGCATCGATATCT-AGTCCCATGTAAGACCATGTCAGGGACATGGCATT
1 GGCATCGATATCTGA-TCCCATGGAAGACCATATCAGAGACATGGCATT
* * *
66553105 GGCATCGATATGTGATCCCATGGAAGACCATATCTGAGATATGGCATT
1 GGCATCGATATCTGATCCCATGGAAGACCATATCAGAGACATGGCATT
66553153 GGCATC
1 GGCATC
66553159 CTACCATGTG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 46 0.98
49 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (48 bp):
GGCATCGATATCTGATCCCATGGAAGACCATATCAGAGACATGGCATT
Found at i:66560913 original size:78 final size:81
Alignment explanation
Indices: 66560794--66560975 Score: 239
Period size: 78 Copynumber: 2.3 Consensus size: 81
66560784 TACTCGTTCA
* *
66560794 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
66560857 ATTTAATAAC-TCGCAC
65 ATTTAATAACTTAGCAC
* **
66560873 CATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
66560936 TTTAGTCACTTAGCAC
66 TTTAATAACTTAGCAC
*
66560952 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
66560976 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.54
79 27 0.30
80 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAATAACTTAGCAC
Found at i:66560975 original size:40 final size:40
Alignment explanation
Indices: 66560792--66560975 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
66560782 GCTACTCGTT
*
66560792 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
66560832 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
66560872 C-CATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
66560910 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
66560951 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66560976 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 25 0.20
39 19 0.15
40 68 0.54
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:66569062 original size:78 final size:80
Alignment explanation
Indices: 66568942--66569122 Score: 246
Period size: 78 Copynumber: 2.3 Consensus size: 80
66568932 TACTCGTTCA
* *
66568942 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
66569005 ATTTAGTAAC-TCGCAC
65 A-TTAGTAACTTAGCAC
**
66569021 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
66569084 TTAGTCACTTAGCAC
66 TTAGTAACTTAGCAC
*
66569099 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
66569123 CATCATTCGA
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
77 10 0.11
78 57 0.63
79 24 0.26
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTAGTAACTTAGCAC
Found at i:66569064 original size:39 final size:40
Alignment explanation
Indices: 66568940--66569122 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
66568930 GCTACTCGTT
* *
66568940 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
66568980 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
66569020 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
66569058 CAAATGCCTTC-GGATCTTAGTCCGG-ATTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAATTAGTAAC-TCGCA
66569098 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66569123 CATCATTCGA
Statistics
Matches: 128, Mismatches: 8, Indels: 14
0.85 0.05 0.09
Matches are distributed among these distances:
38 26 0.20
39 44 0.34
40 56 0.44
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:66577646 original size:40 final size:40
Alignment explanation
Indices: 66577601--66577740 Score: 185
Period size: 40 Copynumber: 3.5 Consensus size: 40
66577591 TTCGAATGAT
66577601 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
66577641 ATCCGGGTTAACTCCCGAAGGCAATTGTGCGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
66577681 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
66577722 A-CCGGGCT-ATGTCCCGAAG
1 ATCCGGGTTAAT-TCCCGAAG
66577741 ACAATCGAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.01
40 85 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:66577737 original size:80 final size:80
Alignment explanation
Indices: 66577601--66577754 Score: 211
Period size: 80 Copynumber: 1.9 Consensus size: 80
66577591 TTCGAATGAT
* * * * *
66577601 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAACTCCCGAAGGCAAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAACTCCCGAAGACAAT
* *
66577666 TGTGCGAGTTACCAA
66 CGAGCGAGTTACCAA
**
66577681 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATAA-CCGGGCTATGTCCCGAAGACAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTA-AATCCGGGCTAACTCCCGAAGACAA
66577745 TCGAGCGAGT
65 TCGAGCGAGT
66577755 AGCTATATCC
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
80 62 0.97
81 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAACTCCCGAAGACAAT
CGAGCGAGTTACCAA
Found at i:66577765 original size:80 final size:80
Alignment explanation
Indices: 66577599--66577780 Score: 208
Period size: 80 Copynumber: 2.3 Consensus size: 80
66577589 TATTCGAATG
* * * * *
66577599 ATATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAACTCCCGAAGGCA
1 ATATCCGGGTTAAATCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAACTCCCGAAGACA
* *
66577664 ATTGTGCGAGTTACC
66 ATCGAGCGAGTTACC
* * **
66577679 AAATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATAA-CCGGGCTATGTCCCGAAGAC
1 ATATCCGGGTTAAATCCCGAAGGCATTTGCGCGAATTACTA-AATCCGGGCTAACTCCCGAAGAC
*
66577743 AATCGAGCGAG-TAGCT
65 AATCGAGCGAGTTA-CC
*
66577759 ATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGTTAAATCCCGAAGG
66577781 TACGTGATTC
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 16 0.19
80 68 0.79
81 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (80 bp):
ATATCCGGGTTAAATCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAACTCCCGAAGACA
ATCGAGCGAGTTACC
Found at i:66580754 original size:49 final size:49
Alignment explanation
Indices: 66580681--66580780 Score: 164
Period size: 49 Copynumber: 2.0 Consensus size: 49
66580671 TATGATATAC
* * *
66580681 ATATATGTGTGATAAGGCCGAATGGCCGATGTGATGGATGTGAAAATGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
*
66580730 ATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
66580779 AT
1 AT
66580781 GTGATGAATG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (49 bp):
ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
Found at i:66580785 original size:21 final size:21
Alignment explanation
Indices: 66580760--66580801 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
66580750 AATGGCCGAC
66580760 GTGATGAATGTGAAAATGTAT
1 GTGATGAATGTGAAAATGTAT
66580781 GTGATGAATGTGAAAATGTAT
1 GTGATGAATGTGAAAATGTAT
66580802 ATATGTGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (21 bp):
GTGATGAATGTGAAAATGTAT
Found at i:66580816 original size:117 final size:115
Alignment explanation
Indices: 66580682--66580895 Score: 374
Period size: 115 Copynumber: 1.8 Consensus size: 115
66580672 ATGATATACA
* *
66580682 TATATGTGTGATAAGGCCGAATGGCCGATGTGATGGATGTGAAAATGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAATG--TATATATGTGATAAGG
66580747 CCTAATGGCCGACGTGATGAATGTGAAAATGTATGTGATGAATGTGAAAATG
64 CCTAATGGCCGACGTGATGAATGTGAAAATGTATGTGATGAATGTGAAAATG
*
66580799 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGGCC
*
66580864 TAATGGCCGATGTGATGAATGTGAAAATGTAT
66 TAATGGCCGACGTGATGAATGTGAAAATGTAT
66580896 ATATATGTGA
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
115 49 0.53
117 44 0.47
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (115 bp):
TATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGGCC
TAATGGCCGACGTGATGAATGTGAAAATGTATGTGATGAATGTGAAAATG
Found at i:66580824 original size:68 final size:69
Alignment explanation
Indices: 66580709--66580848 Score: 246
Period size: 68 Copynumber: 2.0 Consensus size: 69
66580699 CGAATGGCCG
*
66580709 ATGTGATGGATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAATG-ATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAA
66580774 AATGT
65 AATGT
*
66580779 ATGTGATGAATGTGAAAATG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAAAATGATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAA
66580843 ATGT
66 ATGT
66580847 AT
1 AT
66580849 ATATGTGATA
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
68 49 0.72
70 19 0.28
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (69 bp):
ATGTGATGAATGTGAAAATGATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAA
ATGT
Found at i:66581034 original size:49 final size:49
Alignment explanation
Indices: 66580779--66581031 Score: 451
Period size: 49 Copynumber: 5.2 Consensus size: 49
66580769 GTGAAAATGT
66580779 ATGTGATGAATGTGAAAATG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
66580826 ATGTGATGAATGTGAAAATG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
66580873 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
*
66580922 ATGTGATGAATGTGAAAATGTATATATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
* *
66580971 ATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
66581020 ATGTGATGAATG
1 ATGTGATGAATG
66581032 CGATATGTAT
Statistics
Matches: 200, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 67 0.34
49 133 0.67
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:66581069 original size:44 final size:46
Alignment explanation
Indices: 66580779--66581061 Score: 318
Period size: 49 Copynumber: 6.0 Consensus size: 46
66580769 GTGAAAATGT
* * * *
66580779 ATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGCG-AAGTATATATATGTGGTAAGGCCTAATGGCCG
* * * *
66580826 ATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGCG-AAGTATATATATGTGGTAAGGCCTAATGGCCG
* *
66580873 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGCG--AA-GTATATATATGTGGTAAGGCCTAATGGCCG
*
66580922 ATGTGATGAATGTGAAAATGTATATATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGCG--AA-GTATATATATGTGGTAAGGCCTAATGGCCG
*
66580971 ATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGCG-AA--GTATATATATGTGGTAAGGCCTAATGGCCG
* * *
66581020 ATGTGATGAATGCG-A-TATGTATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGCGAAGTATATATATGTGGTAAGGCCTAATGGC
66581062 TAATGTGAAT
Statistics
Matches: 224, Mismatches: 9, Indels: 9
0.93 0.04 0.04
Matches are distributed among these distances:
44 23 0.10
47 62 0.28
48 6 0.03
49 133 0.59
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (46 bp):
ATGTGATGAATGCGAAGTATATATATGTGGTAAGGCCTAATGGCCG
Found at i:66581165 original size:37 final size:36
Alignment explanation
Indices: 66581110--66581196 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
66581100 AACTTGGAAA
66581110 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
66581148 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
66581185 TATGTCCGGGTA
1 TATGTCCGGGTA
66581197 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:66582874 original size:40 final size:40
Alignment explanation
Indices: 66582828--66583206 Score: 414
Period size: 40 Copynumber: 9.6 Consensus size: 40
66582818 TGAATGATAC
* **
66582828 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG-ATATAT
** * * *
66582868 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-AG-TGATATAT
* ** * *
66582908 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTTCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* *
66582948 CC-GGCTAAATTCCGAAGAGCATTCGTGCTAATGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* *
66582987 CC-GGCTAAATTCCGAAGAGCATTCGTGCTAATGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* *
66583026 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
66583066 TCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* *
66583106 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* *
66583146 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
*
66583186 CCGGGCT-AGGTCCGAAGAGCA
1 CCGGGCTAAGTTCCGAAGAGCA
66583207 ATCATGCTGG
Statistics
Matches: 309, Mismatches: 22, Indels: 17
0.89 0.06 0.05
Matches are distributed among these distances:
39 76 0.25
40 227 0.73
41 6 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:66584742 original size:30 final size:29
Alignment explanation
Indices: 66584648--66584749 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
66584638 TATAGTGAAT
* * *
66584648 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
66584677 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
66584705 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
66584735 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
66584750 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:66590131 original size:49 final size:49
Alignment explanation
Indices: 66590058--66590157 Score: 164
Period size: 49 Copynumber: 2.0 Consensus size: 49
66590048 TATGATATAC
* * *
66590058 ATATATGTGTGATAAGGCCGAATGGCCGATGTGATGGATGTGAAAATGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
*
66590107 ATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
66590156 AT
1 AT
66590158 GTGATGAATG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (49 bp):
ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGT
Found at i:66590162 original size:21 final size:21
Alignment explanation
Indices: 66590137--66590178 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
66590127 AATGGCCGAC
66590137 GTGATGAATGTGAAAATGTAT
1 GTGATGAATGTGAAAATGTAT
66590158 GTGATGAATGTGAAAATGTAT
1 GTGATGAATGTGAAAATGTAT
66590179 ATATATGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (21 bp):
GTGATGAATGTGAAAATGTAT
Found at i:66590169 original size:70 final size:70
Alignment explanation
Indices: 66590086--66590227 Score: 266
Period size: 70 Copynumber: 2.0 Consensus size: 70
66590076 CGAATGGCCG
*
66590086 ATGTGATGGATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAA
66590151 AATGT
66 AATGT
*
66590156 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAA
66590221 AATGT
66 AATGT
66590226 AT
1 AT
66590228 ATATATGTGA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (70 bp):
ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAA
AATGT
Found at i:66590192 original size:119 final size:119
Alignment explanation
Indices: 66590058--66590276 Score: 402
Period size: 119 Copynumber: 1.8 Consensus size: 119
66590048 TATGATATAC
* *
66590058 ATATATGTGTGATAAGGCCGAATGGCCGATGTGATGGATGTGAAAATGTATATATATGTGATAAG
1 ATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAG
66590123 GCCTAATGGCCGACGTGATGAATGTGAAAATGTATGTGATGAATGTGAAAATGT
66 GCCTAATGGCCGACGTGATGAATGTGAAAATGTATGTGATGAATGTGAAAATGT
*
66590177 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAG
1 ATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAG
*
66590242 GCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
66 GCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
66590277 ATATATGTGG
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 96 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (119 bp):
ATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAG
GCCTAATGGCCGACGTGATGAATGTGAAAATGTATGTGATGAATGTGAAAATGT
Found at i:66590366 original size:49 final size:49
Alignment explanation
Indices: 66590156--66590363 Score: 389
Period size: 49 Copynumber: 4.2 Consensus size: 49
66590146 GTGAAAATGT
66590156 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
66590205 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
*
66590254 ATGTGATGAATGTGAAAATGTATATATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
* *
66590303 ATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
66590352 ATGTGATGAATG
1 ATGTGATGAATG
66590364 CGATATGTAT
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 155 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:66590401 original size:44 final size:46
Alignment explanation
Indices: 66590156--66590393 Score: 273
Period size: 49 Copynumber: 5.0 Consensus size: 46
66590146 GTGAAAATGT
* *
66590156 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGCG--AA-GTATATATATGTGGTAAGGCCTAATGGCCG
* *
66590205 ATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGCG--AA-GTATATATATGTGGTAAGGCCTAATGGCCG
*
66590254 ATGTGATGAATGTGAAAATGTATATATATGTGGTAAGGCCTAATGGCCG
1 ATGTGATGAATGCG--AA-GTATATATATGTGGTAAGGCCTAATGGCCG
*
66590303 ATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGCG-AA--GTATATATATGTGGTAAGGCCTAATGGCCG
* * *
66590352 ATGTGATGAATGCG-A-TATGTATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGCGAAGTATATATATGTGGTAAGGCCTAATGGC
66590394 TAATGTGAAT
Statistics
Matches: 181, Mismatches: 7, Indels: 7
0.93 0.04 0.04
Matches are distributed among these distances:
44 23 0.13
47 1 0.01
48 3 0.02
49 154 0.85
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (46 bp):
ATGTGATGAATGCGAAGTATATATATGTGGTAAGGCCTAATGGCCG
Found at i:66590497 original size:37 final size:36
Alignment explanation
Indices: 66590442--66590528 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
66590432 AACTTGGAAA
66590442 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
66590480 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
66590517 TATGTCCGGGTA
1 TATGTCCGGGTA
66590529 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:66592915 original size:21 final size:21
Alignment explanation
Indices: 66592872--66592915 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
66592862 AACAATATTG
***
66592872 TAATTTTACATAATTAGTTGT
1 TAATTTTACATAATTACACGT
*
66592893 TAATTTTACATAATTTCACGT
1 TAATTTTACATAATTACACGT
66592914 TA
1 TA
66592916 TTATGCTACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (21 bp):
TAATTTTACATAATTACACGT
Found at i:66593815 original size:14 final size:14
Alignment explanation
Indices: 66593798--66593828 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
66593788 CAATGCTTTG
*
66593798 ATTGAATTTATTCA
1 ATTGAATTCATTCA
66593812 ATTGAATTCATTCA
1 ATTGAATTCATTCA
66593826 ATT
1 ATT
66593829 CATGTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.10, G:0.06, T:0.48
Consensus pattern (14 bp):
ATTGAATTCATTCA
Found at i:66595412 original size:20 final size:17
Alignment explanation
Indices: 66595367--66595400 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
66595357 ACTAGAAAGA
66595367 ACATAGGTTTTCCTCCT
1 ACATAGGTTTTCCTCCT
66595384 ACATAGGTTTTCCTCCT
1 ACATAGGTTTTCCTCCT
66595401 TACTTATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.29, G:0.12, T:0.41
Consensus pattern (17 bp):
ACATAGGTTTTCCTCCT
Found at i:66596347 original size:2 final size:2
Alignment explanation
Indices: 66596340--66596369 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
66596330 ATGGCATAAC
66596340 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66596370 CAAAGCTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66606071 original size:15 final size:16
Alignment explanation
Indices: 66606051--66606080 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66606041 AGTAAGTATG
66606051 TAAAT-AAACAAAAAA
1 TAAATAAAACAAAAAA
66606066 TAAATAAAACAAAAA
1 TAAATAAAACAAAAA
66606081 CCACATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (16 bp):
TAAATAAAACAAAAAA
Found at i:66606365 original size:21 final size:21
Alignment explanation
Indices: 66606316--66606356 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
66606306 CATGTATTTT
*
66606316 AATGATTGATGATAGATTATA
1 AATGTTTGATGATAGATTATA
66606337 AATGTTTGATGATAG-TTATA
1 AATGTTTGATGATAGATTATA
66606357 CAAGTTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (21 bp):
AATGTTTGATGATAGATTATA
Found at i:66607210 original size:22 final size:21
Alignment explanation
Indices: 66607171--66607211 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
66607161 TACTAGATAC
*
66607171 AGGGGCACACGCCCGTGTGGA
1 AGGGGCACACACCCGTGTGGA
*
66607192 AGGGGCAACACACCTGTGTG
1 AGGGGC-ACACACCCGTGTG
66607212 ACTAATTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.22, C:0.27, G:0.39, T:0.12
Consensus pattern (21 bp):
AGGGGCACACACCCGTGTGGA
Found at i:66608460 original size:46 final size:45
Alignment explanation
Indices: 66608410--66608587 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 45
66608400 TACTGACACA
*
66608410 TCTCGTAGCCGATGCATGTTCCAGACATGTCTTACACTGGCTTACG
1 TCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CG
* *
66608456 TCTCG-AGCCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCG
1 TCTCGTAG-CCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCG
* * * *
66608502 CCTC-AATGCCGATGTCATGCCCCAGACATGGTCTTACACTGGCTCTCA
1 TCTCGTA-GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCG
* * *
66608550 TAAT-GTGGTCGATGCATGTCCCAGACATGTCTTACACT
1 T-CTCGTAGCCGATGCATGTCCCAGACATGTCTTACACT
66608588 AGCTCACAAT
Statistics
Matches: 109, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
45 2 0.02
46 58 0.53
47 28 0.26
48 20 0.18
49 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (45 bp):
TCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCG
Found at i:66608536 original size:94 final size:92
Alignment explanation
Indices: 66608417--66608590 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 92
66608407 ACATCTCGTA
** * *
66608417 GCCGATGCATGTTCCAGACATGTCTTACACTGGCT-TACGT-CTCGAGCCCGATGCATGTCCCAG
1 GCCGATGCATGCCCCAGACATGTCTTACACTGGCTCT-CATAAT-GAGCCCGATGCATGTCCCAG
66608480 ACATGTCTTACACTAGCACTCGCCTCAAT
64 ACATGTCTTACACTAGCACTCGCCTCAAT
* **
66608509 GCCGATGTCATGCCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCAG
1 GCCGATG-CATGCCCCAGACAT-GTCTTACACTGGCTCTCATAATGAGCCCGATGCATGTCCCAG
66608574 ACATGTCTTACACTAGC
64 ACATGTCTTACACTAGC
66608591 TCACAATAAC
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
92 7 0.10
93 12 0.17
94 50 0.70
95 2 0.03
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (92 bp):
GCCGATGCATGCCCCAGACATGTCTTACACTGGCTCTCATAATGAGCCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACTCGCCTCAAT
Found at i:66621492 original size:49 final size:49
Alignment explanation
Indices: 66621432--66621561 Score: 149
Period size: 49 Copynumber: 2.7 Consensus size: 49
66621422 CATTAAAATT
* * *
66621432 GATGCCGTGTCCCAGACAGGTTTTACACTGACTTTCATATATCAAG-GTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATC-AGTGTC
* * *
66621481 GATGCCATGTCCCAGATAGGTCTTACACT-AGCTCTCATCTATCGGTGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCAGTGTC
*
66621530 GATGCCATGTCCCA-ACCAAGTCTTACACTGAC
1 GATGCCATGTCCCAGA-CAGGTCTTACACTGAC
66621562 ACACAACAAG
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
48 3 0.04
49 65 0.94
50 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGTC
Found at i:66621681 original size:46 final size:46
Alignment explanation
Indices: 66621619--66621706 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
66621609 TATATCCGAA
* * *
66621619 GGCCGATGCATGTCCCAGACATATCTTCCACTGGCTCTCATAACGT
1 GGCCAATGCATGTCCCAGACATATCTTACACTGGCTCACATAACGT
* *
66621665 GGCCAATGCATGTCCCAGACATGTCTTACAGTGGCTCACATA
1 GGCCAATGCATGTCCCAGACATATCTTACACTGGCTCACATA
66621707 CCACCCAATG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (46 bp):
GGCCAATGCATGTCCCAGACATATCTTACACTGGCTCACATAACGT
Found at i:66628370 original size:29 final size:28
Alignment explanation
Indices: 66628338--66628440 Score: 125
Period size: 29 Copynumber: 3.6 Consensus size: 28
66628328 GGGACGAGAT
* *
66628338 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
66628367 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* *
66628396 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
66628425 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
66628441 TGATTGAGTA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
28 3 0.05
29 59 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:66628482 original size:57 final size:58
Alignment explanation
Indices: 66628347--66628472 Score: 141
Period size: 58 Copynumber: 2.2 Consensus size: 58
66628337 TTGGCACTGA
* * * *
66628347 GTGTGCGAGCTTGTAAT-GTATGGCACTAAGTGTGCGAGTTTGGACTATATGGCACTAT
1 GTGTGCGAACTTG-AATCATATGGCACTAAGTGTGCGAGATTGGACTATATAGCACTAT
** * *
66628405 GTGTGCGGGCTTGAATCATATGGCACTAAGTGTGCGTGATT-GAGTAT-TAAGCACTAT
1 GTGTGCGAACTTGAATCATATGGCACTAAGTGTGCGAGATTGGACTATAT-AGCACTAT
66628462 GTGTGCGAACT
1 GTGTGCGAACT
66628473 CTACACATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
56 1 0.02
57 24 0.41
58 33 0.57
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (58 bp):
GTGTGCGAACTTGAATCATATGGCACTAAGTGTGCGAGATTGGACTATATAGCACTAT
Found at i:66632142 original size:40 final size:40
Alignment explanation
Indices: 66632087--66632308 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
66632077 TATTCGGATG
66632087 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
66632127 ATATCCGGGCTAAGT-CCGAA-GCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
66632168 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
66632208 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
66632248 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
66632288 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
66632309 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 16, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
38 10 0.06
39 19 0.12
40 97 0.60
41 20 0.12
42 5 0.03
43 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:66639785 original size:21 final size:20
Alignment explanation
Indices: 66639749--66639788 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
66639739 CACTTAAAAT
66639749 AGGGCACACACCCGTGTGGA
1 AGGGCACACACCCGTGTGGA
66639769 AGGGCA-ACACGCTCGTGTGG
1 AGGGCACACAC-C-CGTGTGG
66639789 CCCTGTTGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 7 0.39
21 7 0.39
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (20 bp):
AGGGCACACACCCGTGTGGA
Found at i:66644752 original size:39 final size:39
Alignment explanation
Indices: 66644694--66644852 Score: 228
Period size: 39 Copynumber: 4.1 Consensus size: 39
66644684 AATGAATGTA
66644694 CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
* **
66644733 TGAATTGTGATATTTGGGCTAAGCCCGAAGGCAATTGTG
1 CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
** *
66644772 CGAGCTATGATATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
* * *
66644811 CGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 CGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTG
66644851 CG
1 CG
66644853 GGTTACCATA
Statistics
Matches: 106, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (39 bp):
CGAATTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
Found at i:66644868 original size:40 final size:39
Alignment explanation
Indices: 66644701--66644871 Score: 216
Period size: 39 Copynumber: 4.4 Consensus size: 39
66644691 GTACGAATTG
* * *
66644701 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGTGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
** *
66644740 TGATATTTGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
66644779 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
66644818 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
66644858 CCATAACCGGGCTA
1 TGATATCCGGGCTA
66644872 TGTCTCGAAG
Statistics
Matches: 113, Mismatches: 18, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
39 83 0.73
40 30 0.27
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:66648920 original size:49 final size:48
Alignment explanation
Indices: 66648808--66648988 Score: 211
Period size: 49 Copynumber: 3.7 Consensus size: 48
66648798 GGGATAAGAT
* * * * * *
66648808 GTCGACGCCATGTCCCAAACATGGTCTTACACTGGCTAGCACAT-TAAA
1 GTCGATGCCATGTCCCAGACA-GGTCTTACACTGACTATCATATATCAA
* *
66648856 GTCGATGCCGTGTCCCAGACAGGTCTTACACTGACTTTCATATATCAA
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTATCATATATCAA
* * * * *
66648904 GTCTGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATCTATCAGC
1 GTC-GATGCCATGTCCCAGACAGGTCTTACACTGACTATCATATATCA-A
66648954 GTCGATGCCATGTCCCAGACAGGTCTTACACTGAC
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGAC
66648989 ACACATCAAG
Statistics
Matches: 114, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
47 18 0.16
48 24 0.21
49 69 0.61
50 3 0.03
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTATCATATATCAA
Found at i:66650860 original size:40 final size:40
Alignment explanation
Indices: 66650811--66650917 Score: 130
Period size: 40 Copynumber: 2.7 Consensus size: 40
66650801 AAATTATATT
* *
66650811 CGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC-ATC
1 CGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATACTATC
*
66650851 CGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTCTATC
1 CGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATACTATC
*
66650891 CGGGCTAAGACCCGAAGGCATTTGTGC
1 CGGGCTAAGACCCGAAGGCAATTGTGC
66650918 ACATGCTTAT
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
38 1 0.02
39 5 0.08
40 51 0.86
41 2 0.03
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.21
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATACTATC
Found at i:66650931 original size:40 final size:39
Alignment explanation
Indices: 66650804--66650933 Score: 129
Period size: 40 Copynumber: 3.3 Consensus size: 39
66650794 ATGCTGGAAA
* * * *
66650804 TTATATTCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* * *
66650845 -TACATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
66650883 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
66650924 TTATATCCGG
1 TTATATCCGG
66650934 TTATATTCTG
Statistics
Matches: 72, Mismatches: 12, Indels: 11
0.76 0.13 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 67 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:66658389 original size:42 final size:40
Alignment explanation
Indices: 66658279--66658402 Score: 144
Period size: 43 Copynumber: 3.0 Consensus size: 40
66658269 TTTTATCCTA
* *
66658279 GAAAAAAGAATTTAAAAA-GA-AGATAATCTTAGATTGTA
1 GAAAAAAGAATTTAAAAAGGAGAGATAATCTTGGATTGTT
*
66658317 GAAAAAAGTATTTAAAAAGAGGAGAAGATAATCTTGGATTGTT
1 GAAAAAAGAATTT-AAAA-AGGAG-AGATAATCTTGGATTGTT
* *
66658360 GAAAAAAGAATTTAAAAATGGAGATGATAAACTTGGGTTGTT
1 GAAAAAAGAATTTAAAAA-GGAGA-GATAATCTTGGATTGTT
66658402 G
1 G
66658403 GATTTACCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
38 12 0.16
39 4 0.05
40 1 0.01
41 4 0.05
42 24 0.33
43 28 0.38
ACGTcount: A:0.48, C:0.02, G:0.22, T:0.27
Consensus pattern (40 bp):
GAAAAAAGAATTTAAAAAGGAGAGATAATCTTGGATTGTT
Done.