Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 222 of 335
Found at i:66659759 original size:47 final size:47
Alignment explanation
Indices: 66659703--66659798 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
66659693 TTTATGATCA
*
66659703 AATGAAACCCTTTTAATGAGTTACAATATGATTTTTATGATTCTTTT
1 AATGAAACCCTTTTAATGAGTTACAATATGATTTTGATGATTCTTTT
*
66659750 AATGAAACCCTTTTAATGAGTTACAATATGCTTTTGATGATTCTTTT
1 AATGAAACCCTTTTAATGAGTTACAATATGATTTTGATGATTCTTTT
66659797 AA
1 AA
66659799 ATTTTTATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.45
Consensus pattern (47 bp):
AATGAAACCCTTTTAATGAGTTACAATATGATTTTGATGATTCTTTT
Found at i:66660012 original size:14 final size:15
Alignment explanation
Indices: 66659993--66660022 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
66659983 GATCTTATGT
66659993 TTTTAAAA-AATAAA
1 TTTTAAAAGAATAAA
66660007 TTTTAAAAGAATAAA
1 TTTTAAAAGAATAAA
66660022 T
1 T
66660023 AAATATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (15 bp):
TTTTAAAAGAATAAA
Found at i:66662949 original size:22 final size:21
Alignment explanation
Indices: 66662914--66662989 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
66662904 AAAAGGTATC
* *
66662914 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
66662935 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
66662958 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
66662977 TGC-AATCATATCT
1 TACAAATCATATCT
66662990 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:66663048 original size:17 final size:19
Alignment explanation
Indices: 66662950--66663040 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
66662940 AATCATATCT
66662950 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
66662969 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
66662987 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
66663004 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
66663023 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
66663041 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:66663513 original size:44 final size:45
Alignment explanation
Indices: 66663391--66663589 Score: 199
Period size: 44 Copynumber: 4.5 Consensus size: 45
66663381 AGAAGGCGAT
* *
66663391 ATCTACTATCTTTGATCTACTCCCCGTCTAATACAGAGACGCCAA
1 ATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* ** * * *
66663436 ATTTGTTATCATCGATCTGCTCCCCGTCTAATACAAAGACACCAA
1 ATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
66663481 ATCTACT-TCTTCAATCTGCTCTCCGTCTAATACAGAGATGCCAA
1 ATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
** * *
66663525 ATCTGTTATC-TCTGATTTGCT-CCCGTCTAATACAGAGATGCCAA
1 ATCTACTATCTTC-GATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
66663569 ATCT-GTCATCTTGGATCTGCT
1 ATCTACT-ATCTTCGATCTGCT
66663590 TCGATGTAAA
Statistics
Matches: 125, Mismatches: 25, Indels: 9
0.79 0.16 0.06
Matches are distributed among these distances:
43 1 0.01
44 74 0.59
45 50 0.40
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.32
Consensus pattern (45 bp):
ATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:66663587 original size:89 final size:89
Alignment explanation
Indices: 66663391--66663589 Score: 240
Period size: 89 Copynumber: 2.2 Consensus size: 89
66663381 AGAAGGCGAT
* * *
66663391 ATCTACTATCTTTGATCTACTCCCCGTCTAATACAGAGACGCCAAATTTGTTATCATCGATCTGC
1 ATCTAC-ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCATCGATCTGC
66663456 TCCCCGTCTAATACAAAGACACCAA
65 TCCCCGTCTAATACAAAGACACCAA
* * * * *
66663481 ATCTACTTCTTCAATCTGCTCTCCGTCTAATACAGAGATGCCAAATCTGTTATC-TCTGATTTGC
1 ATCTACATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCATC-GATCTGC
* **
66663545 T-CCCGTCTAATACAGAGATGCCAA
65 TCCCCGTCTAATACAAAGACACCAA
* *
66663569 ATCTGTCATCTTGGATCTGCT
1 ATCT-ACATCTTCGATCTGCT
66663590 TCGATGTAAA
Statistics
Matches: 92, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
88 26 0.28
89 60 0.65
90 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.32
Consensus pattern (89 bp):
ATCTACATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCATCGATCTGCT
CCCCGTCTAATACAAAGACACCAA
Found at i:66663732 original size:78 final size:78
Alignment explanation
Indices: 66663603--66663897 Score: 421
Period size: 78 Copynumber: 3.8 Consensus size: 78
66663593 ATGTAAACAC
* * *
66663603 ATGAAGGTCAGGTCTGCTATGTCTTCGATCTGCTCCCCATCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
66663668 TGGATTTGCTTCA
66 TGGATCTGCTTCA
* *
66663681 ATGAAGGTACA-ATCTGTTATGTATTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATC
66663745 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * *
66663759 ATTAAGGTCAGATCTGCTGTGTCTTCAATCTACTCCCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
66663824 TGGATCTGCTGCA
66 TGGATCTGCTTCA
* * * * **
66663837 ATGAAGGTCAGATCTGCTATGTCTTCGATATGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATC
66663898 TGTTTCTTCG
Statistics
Matches: 192, Mismatches: 23, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
77 2 0.01
78 188 0.98
79 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:66664369 original size:220 final size:219
Alignment explanation
Indices: 66663839--66664427 Score: 950
Period size: 220 Copynumber: 2.7 Consensus size: 219
66663829 CTGCTGCAAT
* *
66663839 GAAGGTCAGATCTGCTATGTCTTCGATATGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
*
66663904 TTCGATTTGTTCTTTGACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66 TTCGATTTGTTCTTTGACAGTACAGAGATGTCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
*
66663969 TGAAAGCCAAATCTACTATGTCTTCGATTTGCTCTTGTCAACCTAAGGATGCCAAATCATCTTGG
131 TGAAAGCCAAATCTACTATGTCTTCGATCTGCTCTTGTCAACCTAAGGATGCCAAATCATCTTGG
* *
66664034 ATCTACTTCGATGTGAAAACTTTC
196 ATCTACTTCGATGTGAAAACATCC
* * * *
66664058 GAAGGTTAGATCTACTATGTCTTCAATCTGCTTTCCGTCAAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* *
66664123 TTCGATTTGTTCTTTGACAGTACAGAGATGTCAATTCATCTTAGATCTGCTTCAGTGTAAACACG
66 TTCGATTTGTTCTTTGACAGTACAGAGATGTCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66664188 TGAAAGCCAAATCTGA-TATGTCTTCGATCTGCTCCTTGTCAACGC-AAGGATGCCAAATCATCT
131 TGAAAGCCAAATCT-ACTATGTCTTCGATCTGCT-CTTGTCAAC-CTAAGGATGCCAAATCATCT
66664251 TGGATCTACTTCGATGTGAAAACATCC
193 TGGATCTACTTCGATGTGAAAACATCC
*
66664278 GAAGGTTAGATCTGCTATATCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
1 GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
* * * * *
66664343 TTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCTGCTTCAGCGTAAACACC
66 TTCGATTTGTTCTTTGACAGTACAGAGATGTCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
*
66664408 T-AAAGGTCAAATCTACTATG
131 TGAAA-GCCAAATCTACTATG
66664428 CTTTAGCCAG
Statistics
Matches: 340, Mismatches: 25, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
219 155 0.46
220 184 0.54
221 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (219 bp):
GAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTC
TTCGATTTGTTCTTTGACAGTACAGAGATGTCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
TGAAAGCCAAATCTACTATGTCTTCGATCTGCTCTTGTCAACCTAAGGATGCCAAATCATCTTGG
ATCTACTTCGATGTGAAAACATCC
Found at i:66670656 original size:40 final size:40
Alignment explanation
Indices: 66670562--66670786 Score: 242
Period size: 40 Copynumber: 5.6 Consensus size: 40
66670552 TATTCGAATG
*
66670562 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCT-AGTGACT
* * * *
66670603 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
66670643 ATATCCGGGCTAAGA-CTCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCTAGTGACT
* * * *
66670683 ATATCCGGGCTAAAACCCGAAGACATTTGTGCTAGGGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
66670723 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
66670763 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
66670787 CTTGTGCAAG
Statistics
Matches: 154, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
39 2 0.01
40 122 0.79
41 29 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:66670744 original size:80 final size:80
Alignment explanation
Indices: 66670562--66670822 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
66670552 TATTCGAATG
* * * * *
66670562 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTATATCCGGGCTAAGACCCGAAGAC
*
66670627 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTGGCT
* * * * *
66670643 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGACA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGACA
* *
66670708 TTTGTGCTAG-GGACT
66 TTCGTGCGAGTGG-CT
* * * * *
66670723 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGACA
* * *
66670788 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTGGCT
*
66670802 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
66670823 ATTACTTGAG
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 93 0.62
81 30 0.20
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGACA
TTCGTGCGAGTGGCT
Found at i:66670776 original size:120 final size:120
Alignment explanation
Indices: 66670562--66670823 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
66670552 TATTCGAATG
* * * *
66670562 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGACATTTGTGCTAAGGGACTATAACCGGACTAAGATCCGAAGGC
* * * * * *
66670627 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACTCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
66670683 ATATCCGGGCTAAAACCCGAAGACATTTGTGCT-AGGGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGACATTTGTGCTAAGGGACTATAACCGGACTAAGAT-CCGAAGG
* * *
66670746 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
66670802 ATATCC-GGCTAAATCCCGAAGA
1 ATATCCGGGCTAAATCCCGAAGA
66670824 TTACTTGAGT
Statistics
Matches: 121, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
118 16 0.13
119 19 0.16
120 57 0.47
121 29 0.24
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGACATTTGTGCTAAGGGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:66673735 original size:17 final size:19
Alignment explanation
Indices: 66673693--66673736 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
66673683 ATGAAATTTT
*
66673693 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
66673712 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
66673730 AA-TATTA
1 AATTATTA
66673737 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:66675555 original size:28 final size:28
Alignment explanation
Indices: 66675522--66675590 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
66675512 GCGTAGATCA
66675522 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
66675550 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
66675578 CGATA-TACCCCTA
1 CGAAATTACCCCTA
66675591 GGGTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 8 0.21
28 30 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:66677998 original size:17 final size:19
Alignment explanation
Indices: 66677956--66677999 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
66677946 ATGAAATTTT
*
66677956 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
66677975 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
66677993 AA-TATTA
1 AATTATTA
66678000 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:66679819 original size:28 final size:28
Alignment explanation
Indices: 66679786--66679854 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
66679776 GCGTAGATCA
66679786 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
66679814 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
66679842 CGATA-TACCCCTA
1 CGAAATTACCCCTA
66679855 GGTTTTAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 8 0.21
28 30 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:66686239 original size:40 final size:40
Alignment explanation
Indices: 66686145--66686369 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 40
66686135 TATTCGAATG
*
66686145 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
66686186 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
66686226 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * * *
66686266 ATATCCGGGCTAAAACCCGAAGACATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
66686306 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
66686346 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
66686370 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 1 0.01
40 125 0.80
41 29 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:66686325 original size:80 final size:80
Alignment explanation
Indices: 66686145--66686405 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
66686135 TATTCGAATG
* * * * *
66686145 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGAC
*
66686210 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
66686226 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGACA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGACA
* *
66686291 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
66686306 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGACA
* * *
66686371 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
66686385 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
66686406 ATTACTTGAG
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 93 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGACA
TTCGTGCGAGTCGCT
Found at i:66686359 original size:120 final size:120
Alignment explanation
Indices: 66686145--66686406 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
66686135 TATTCGAATG
* * * *
66686145 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGACATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
66686210 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
66686266 ATATCCGGGCTAAAACCCGAAGACATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGACATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
66686329 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
66686385 ATATCC-GGCTAAATCCCGAAGA
1 ATATCCGGGCTAAATCCCGAAGA
66686407 TTACTTGAGT
Statistics
Matches: 122, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
118 16 0.13
119 19 0.16
120 57 0.47
121 30 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGACATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:66708688 original size:28 final size:28
Alignment explanation
Indices: 66708619--66708719 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
66708609 GACAAGATTG
* * * *
66708619 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
66708649 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
66708677 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
66708706 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
66708720 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:66716651 original size:28 final size:28
Alignment explanation
Indices: 66716582--66716682 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
66716572 GACAAGATTG
* * * *
66716582 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
66716612 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
66716640 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
66716669 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
66716683 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:66724371 original size:13 final size:13
Alignment explanation
Indices: 66724353--66724377 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66724343 CATTACTTCT
66724353 TCTTCTCTCTCTC
1 TCTTCTCTCTCTC
66724366 TCTTCTCTCTCT
1 TCTTCTCTCTCT
66724378 TTTCTTTGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (13 bp):
TCTTCTCTCTCTC
Found at i:66729208 original size:40 final size:39
Alignment explanation
Indices: 66728983--66729197 Score: 292
Period size: 39 Copynumber: 5.5 Consensus size: 39
66728973 GTATGAGATA
* * *
66728983 TATATCCGAGCTAATTCCCGAAGGCATTTGTGC-GGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
66729021 TATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
66729060 TATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
66729099 TATA-CACGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATC-CGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * * *
66729138 TATATCCAGGTTAAGTCCCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
66729176 TATATTCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
66729198 CATGCTTTGT
Statistics
Matches: 158, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
38 49 0.31
39 100 0.63
40 9 0.06
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:66735327 original size:66 final size:68
Alignment explanation
Indices: 66735251--66735437 Score: 254
Period size: 71 Copynumber: 2.7 Consensus size: 68
66735241 TAGTACCACT
* *
66735251 CATGCGACCTAAC-CGATTTGTC-T-CGTAGCTCTCTTTTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAACAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
66735313 CACG
65 CACG
*
66735317 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAAC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
66735382 ATCACG
63 ATCACG
*
66735388 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAAC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
66735438 GATACATCTC
Statistics
Matches: 112, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
66 12 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 92 0.82
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAACACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:66735362 original size:71 final size:71
Alignment explanation
Indices: 66735274--66735437 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
66735264 CGATTTGTCT
*
66735274 CGTAGCTCTCTTTTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66735339 CTTTCA
66 CTTTCA
66735345 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
66735410 CTTTCA
66 CTTTCA
66735416 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
66735438 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:66735475 original size:71 final size:70
Alignment explanation
Indices: 66735274--66735471 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
66735264 CGATTTGTCT
* * * * *
66735274 CGTAGCTCTCTTTTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
66735339 CTTTCA
65 CTTTCA
* * * *
66735345 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
66735410 CTTTCA
65 CTTTCA
* *
66735416 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
66735472 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:66738913 original size:40 final size:40
Alignment explanation
Indices: 66738828--66738978 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
66738818 AATTGAATGA
* * *
66738828 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
66738868 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
66738909 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
66738948 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
66738979 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:66738992 original size:40 final size:40
Alignment explanation
Indices: 66738864--66738994 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
66738854 TATGCTGGAA
* * *
66738864 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
66738904 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
66738944 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
66738984 ATTATATCCGG
1 ATTATATCCGG
66738995 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:66750100 original size:14 final size:14
Alignment explanation
Indices: 66750081--66750122 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
66750071 TATTCTTTTC
66750081 TTTCTTTTTTTCTT
1 TTTCTTTTTTTCTT
* *
66750095 TTTCTTTTTCTATT
1 TTTCTTTTTTTCTT
66750109 TTTCTTTTCTTTCT
1 TTTCTTTT-TTTCT
66750123 CCTTCTCTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 20 0.87
15 3 0.13
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTCTTTTTTTCTT
Found at i:66750110 original size:20 final size:19
Alignment explanation
Indices: 66750073--66750120 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
66750063 CATAGGATTA
*
66750073 TTCTTTTC--TTTCTTTTT
1 TTCTTTTCTTTTTCTATTT
66750090 TTCTTTTTCTTTTTCTATTT
1 TTC-TTTTCTTTTTCTATTT
66750110 TTCTTTTCTTT
1 TTCTTTTCTTT
66750121 CTCCTTCTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 3 0.11
18 5 0.19
19 8 0.30
20 11 0.41
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (19 bp):
TTCTTTTCTTTTTCTATTT
Found at i:66751684 original size:80 final size:80
Alignment explanation
Indices: 66751600--66751748 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
66751590 TATGGTAACC
* * * *
66751600 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
66751664 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
66751680 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
66751745 CCGG
66 CCGG
66751749 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:66751690 original size:40 final size:38
Alignment explanation
Indices: 66751641--66751748 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
66751631 ATCACGATTT
*
66751641 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
66751681 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
66751721 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
66751749 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:66755112 original size:40 final size:39
Alignment explanation
Indices: 66755068--66755182 Score: 158
Period size: 39 Copynumber: 2.9 Consensus size: 39
66755058 AAGTGACCAT
* *
66755068 ATCCGGATTAAGATCCGAAGGCGTTCGTGCGAGTTAATAA
1 ATCCGGGTTAAG-TCCGAAGGCATTCGTGCGAGTTAATAA
* * *
66755108 ATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTAATAA
*
66755147 ACCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA
1 ATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTA
66755183 CTATAACCGG
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
39 34 0.52
40 32 0.48
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (39 bp):
ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTAATAA
Found at i:66755183 original size:40 final size:40
Alignment explanation
Indices: 66755082--66755220 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 40
66755072 GGATTAAGAT
* * *
66755082 CCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
*
66755121 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
* *
66755161 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGTTAAGTC
* *
66755201 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
66755221 CGTTATATCC
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.38
40 46 0.52
41 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGTTAAGTC
Found at i:66755235 original size:79 final size:77
Alignment explanation
Indices: 66755066--66755246 Score: 186
Period size: 79 Copynumber: 2.3 Consensus size: 77
66755056 TTAAGTGACC
*
66755066 ATATCCGGATTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCAT
* *
66755131 TTGTGCGAGTTACT
64 TTGAGCGAGTCACT
* * * *
66755145 AAACCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTCCCGAAGG
1 ATATCC-GGTTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AATCC-GGGTTAAG-CCCGAAGG
**
66755208 CATTTGAGCGAGTCGTT
61 CATTTGAGCGAGTCACT
*
66755225 ATATCCGGTTAAATTCCGAAGG
1 ATATCCGGTT-AAGTCCGAAGG
66755247 TATGTGATTC
Statistics
Matches: 84, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
78 1 0.01
79 46 0.55
80 37 0.44
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (77 bp):
ATATCCGGTTAAGTCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTT
GAGCGAGTCACT
Found at i:66760537 original size:28 final size:27
Alignment explanation
Indices: 66760474--66760543 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
66760464 ATAGTGAGTC
*
66760474 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
66760501 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
66760529 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66760544 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66768473 original size:28 final size:27
Alignment explanation
Indices: 66768410--66768479 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
66768400 ATAGTGAGTC
*
66768410 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
66768437 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
66768465 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66768480 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66770366 original size:63 final size:64
Alignment explanation
Indices: 66770286--66770470 Score: 198
Period size: 63 Copynumber: 2.9 Consensus size: 64
66770276 AGACATTATG
* * *
66770286 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
66770349 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
66770414 AA
63 AA
* * *
66770416 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCTA
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTA
66770471 AACTCTATGA
Statistics
Matches: 100, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
62 1 0.01
63 45 0.45
64 1 0.01
65 2 0.02
66 44 0.44
67 7 0.07
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:66773127 original size:28 final size:27
Alignment explanation
Indices: 66773064--66773133 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
66773054 ATAGTGAGTC
*
66773064 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
66773091 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
66773119 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
66773134 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:66775387 original size:93 final size:93
Alignment explanation
Indices: 66775275--66775446 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
66775265 CGCCCATAAG
* *
66775275 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
66775340 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
66775368 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
66775433 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
66775447 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:66775443 original size:46 final size:46
Alignment explanation
Indices: 66775268--66775443 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
66775258 TGTAACCCGC
* * *
66775268 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
66775314 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
66775364 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
66775407 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
66775444 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:66782957 original size:93 final size:93
Alignment explanation
Indices: 66782845--66783016 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
66782835 CGCCCATAAG
* *
66782845 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
66782910 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
66782938 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
66783003 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
66783017 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:66783013 original size:46 final size:46
Alignment explanation
Indices: 66782838--66783013 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
66782828 TGTAACCCGC
* * *
66782838 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
66782884 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
66782934 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
66782977 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
66783014 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:66784748 original size:17 final size:17
Alignment explanation
Indices: 66784726--66784765 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
66784716 GTGGATGAGT
66784726 TGAATGGATTTAGATTA
1 TGAATGGATTTAGATTA
66784743 TGAATGGATTTAGATTA
1 TGAATGGATTTAGATTA
66784760 TGAATG
1 TGAATG
66784766 CATAAATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (17 bp):
TGAATGGATTTAGATTA
Found at i:66787556 original size:17 final size:17
Alignment explanation
Indices: 66787530--66787564 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
66787520 GTGGATGAGT
*
66787530 TGAATGGATTTAGATTA
1 TGAATAGATTTAGATTA
66787547 TGAATAGATTTAGATTA
1 TGAATAGATTTAGATTA
66787564 T
1 T
66787565 AAATGCATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (17 bp):
TGAATAGATTTAGATTA
Found at i:66788013 original size:10 final size:10
Alignment explanation
Indices: 66787998--66788026 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
66787988 AATCAAGTTT
66787998 TTATTTTTAA
1 TTATTTTTAA
66788008 TTA-TTTTAA
1 TTATTTTTAA
66788017 TTATTTTTAA
1 TTATTTTTAA
66788027 GATTTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TTATTTTTAA
Found at i:66788033 original size:19 final size:20
Alignment explanation
Indices: 66787998--66788038 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
66787988 AATCAAGTTT
66787998 TTATTTTT-AATTATTTTAA
1 TTATTTTTAAATTATTTTAA
66788017 TTATTTTTAAGATT-TTTTAA
1 TTATTTTTAA-ATTATTTTAA
66788037 TT
1 TT
66788039 TATTGTGCGC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 8 0.40
20 9 0.45
21 3 0.15
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (20 bp):
TTATTTTTAAATTATTTTAA
Found at i:66797028 original size:2 final size:2
Alignment explanation
Indices: 66797021--66797056 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
66797011 ACTTCCTCCA
66797021 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66797057 CACCCTACCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66797408 original size:31 final size:31
Alignment explanation
Indices: 66797363--66797432 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
66797353 GTCCAGATGT
*
66797363 CACACGCCCATGTGGCGTG-TCTGTGTGGGCC
1 CACACGCCCATGTGGCATGTTC-GTGTGGGCC
* * *
66797394 CATACGCCCGTGTGGCATGTTCGTGTGGGCT
1 CACACGCCCATGTGGCATGTTCGTGTGGGCC
66797425 CACACGCC
1 CACACGCC
66797433 TAGTTTGGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
31 31 0.94
32 2 0.06
ACGTcount: A:0.11, C:0.33, G:0.33, T:0.23
Consensus pattern (31 bp):
CACACGCCCATGTGGCATGTTCGTGTGGGCC
Found at i:66807271 original size:29 final size:29
Alignment explanation
Indices: 66807243--66807344 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
66807233 CCTCCGAGCT
** * * *
66807243 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
66807272 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
66807301 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
66807330 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
66807345 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:66815131 original size:29 final size:29
Alignment explanation
Indices: 66815103--66815204 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
66815093 CCTCCGAGCT
** * * *
66815103 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
66815132 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
66815161 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
66815190 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
66815205 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:66822567 original size:11 final size:11
Alignment explanation
Indices: 66822551--66822575 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
66822541 GTCCTTTACT
66822551 TGTAATTTTTA
1 TGTAATTTTTA
66822562 TGTAATTTTTA
1 TGTAATTTTTA
66822573 TGT
1 TGT
66822576 TTTTGAGGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (11 bp):
TGTAATTTTTA
Found at i:66823541 original size:30 final size:30
Alignment explanation
Indices: 66823505--66823767 Score: 321
Period size: 30 Copynumber: 8.8 Consensus size: 30
66823495 TAACCCGACA
* * *
66823505 ATAATGTCAGCTTGTATGAGCAATTCGATC
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
*
66823535 ATAATGTCAACTTGTGTGAGCAATCCAATC
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
* *
66823565 ATAATGTCTGCTTGTGTGAGCAATCCTATC
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
*
66823595 ATAATGTCAGCTTGTGTGAGCAA-CCTGATC
1 ATAATGTCAGCTTGTGTGAGCAATCC-AATC
* * * *
66823625 ATAATGTCAACTTATGTGAACAATCCAATT
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
* *
66823655 ATAATGTCAGCTTGTGTGAGCAATCCGATT
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
* * *
66823685 ATAATGTCAACTTGTGTGAACAATCCAATT
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
* * *
66823715 ATAATGTCAGATTGTGTGAGCAATTCAATT
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
* *
66823745 ATAATGTTAACTTGTGTGAGCAA
1 ATAATGTCAGCTTGTGTGAGCAA
66823768 CCCTAAAATA
Statistics
Matches: 203, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
29 2 0.01
30 199 0.98
31 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (30 bp):
ATAATGTCAGCTTGTGTGAGCAATCCAATC
Found at i:66827194 original size:33 final size:34
Alignment explanation
Indices: 66827146--66827216 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
66827136 ACAGTGCATG
*
66827146 CAGTAACAGTCTGGGCCAGAGCCCTATTCAGTAA
1 CAGTAACAGTCTGGGCCAGAGCCCTATACAGTAA
* ***
66827180 CAGT-ACAGTTTGGGCTTTAGCCCTATACAGTAA
1 CAGTAACAGTCTGGGCCAGAGCCCTATACAGTAA
66827213 CAGT
1 CAGT
66827217 GTGGGCCTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (34 bp):
CAGTAACAGTCTGGGCCAGAGCCCTATACAGTAA
Found at i:66827229 original size:28 final size:28
Alignment explanation
Indices: 66827146--66827239 Score: 82
Period size: 28 Copynumber: 3.2 Consensus size: 28
66827136 ACAGTGCATG
*
66827146 CAGTAACAGTCTGGGCC-AGAGCCCTATT
1 CAGTAACAGTGTGGGCCTA-AGCCCTATT
* * *
66827174 CAGTAACAGTACAGTTTGGGCTTTAGCCCTATA
1 CAGTAACAGT---G--TGGGCCTAAGCCCTATT
*
66827207 CAGTAACAGTGTGGGCCTAAGCCCCATT
1 CAGTAACAGTGTGGGCCTAAGCCCTATT
66827235 CAGTA
1 CAGTA
66827240 TCAAAACAGT
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
28 28 0.54
30 1 0.02
33 23 0.44
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTAAGCCCTATT
Found at i:66829469 original size:39 final size:39
Alignment explanation
Indices: 66829256--66829453 Score: 272
Period size: 39 Copynumber: 5.1 Consensus size: 39
66829246 TGTAAATATA
*
66829256 TATATGCGAGAATTATATCCGGACTTCAGGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* * *
66829295 TATAAGCGAGAATTATATCCAGACCTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* * *
66829334 TATATGCGAGAAGTATATCTGGACTTCAGGTCTGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* * *
66829373 TATAT-CTGAGAATTATATCCGAACTTCATGTCCGTAGGC
1 TATATGC-GAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
66829412 TATATGCGAGAATAATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
66829451 TAT
1 TAT
66829454 GTGCTGGACA
Statistics
Matches: 136, Mismatches: 21, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
38 1 0.01
39 134 0.99
40 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:66842904 original size:21 final size:21
Alignment explanation
Indices: 66842862--66842905 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
66842852 TGTTGCGTAA
* * *
66842862 AGTAGGATTTTTCTATTAAGG
1 AGTAGGAGTTTACTACTAAGG
*
66842883 AGTAGGAGTTTACTACTGAGG
1 AGTAGGAGTTTACTACTAAGG
66842904 AG
1 AG
66842906 CAAGATTGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.34
Consensus pattern (21 bp):
AGTAGGAGTTTACTACTAAGG
Found at i:66845131 original size:46 final size:44
Alignment explanation
Indices: 66844985--66845149 Score: 152
Period size: 46 Copynumber: 3.6 Consensus size: 44
66844975 TGTGTGAGCT
* * * *
66844985 AGTGTAAGACATGTCCGGGACATGCATCAGACACACTAG-GAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CA-TCGAGACAAGCC
* * * *
66845030 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGCGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGAGACAAGC-C
* *
66845077 TAGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGATCTAAGCC
1 -AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGA-C-AAGCC
*
66845124 AGTGTAAGACATGCCTGGGACATGCA
1 AGTGTAAGACATGTCTGGGACATGCA
66845150 ACGGCTACGA
Statistics
Matches: 97, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
45 11 0.11
46 52 0.54
47 22 0.23
48 12 0.12
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACAAGCC
Found at i:66845282 original size:49 final size:47
Alignment explanation
Indices: 66845213--66845343 Score: 156
Period size: 47 Copynumber: 2.7 Consensus size: 47
66845203 AGATATGTGA
* *
66845213 GAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCAACCTTGATTTCAAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAA-CTTGA--TCAAT
* * * * **
66845263 -AGTCAGTGTAAGACTATGTCTGGGACATGGCATCGACTTGATGGAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAACTTGATCAAT
66845309 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
66845344 GGCCTTATAC
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
46 3 0.04
47 31 0.45
48 5 0.07
49 30 0.43
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAACTTGATCAAT
Found at i:66848157 original size:46 final size:46
Alignment explanation
Indices: 66848104--66848362 Score: 179
Period size: 46 Copynumber: 5.6 Consensus size: 46
66848094 TCTGAATTCA
* ** *
66848104 TTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTTTGAACTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCG
* * * * * * *
66848150 TTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCATCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACGTCCGAGCTCG
* ** * * * *
66848197 TTGATTTGAGTCTAAGTTCACTTATGGATGCGAATGCCCAAACTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCG
* * * *
66848243 TTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCATCCGAGCTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCCGAGCTCG
* *
66848290 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAGCTTG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCG
*
66848336 TTGAGTTGAGTCCGAGTTCGCTTATGG
1 TTGAGTTGAGTCCGAGTTCACTTATGG
66848363 GCGGGTTACA
Statistics
Matches: 158, Mismatches: 41, Indels: 28
0.70 0.18 0.12
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
45 4 0.03
46 82 0.52
47 55 0.35
48 4 0.03
50 4 0.03
51 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (46 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCG
Found at i:66848207 original size:47 final size:47
Alignment explanation
Indices: 66848146--66848308 Score: 156
Period size: 47 Copynumber: 3.5 Consensus size: 47
66848136 AACGTTTGAA
66848146 CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAG
* ** * * * * * *
66848193 CTCGTTGATTTGAGTCTAAGTTCACT--TATG-GA-T-GCGAATGCCCAAA
1 CTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCAT--CCGAG
* *
66848239 CTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAG
66848286 CTCGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
66848309 ACTTATGGAT
Statistics
Matches: 89, Mismatches: 18, Indels: 18
0.71 0.14 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 27 0.30
47 48 0.54
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAG
Found at i:66848208 original size:93 final size:93
Alignment explanation
Indices: 66848104--66848355 Score: 396
Period size: 93 Copynumber: 2.7 Consensus size: 93
66848094 TCTGAATTCA
*
66848104 TTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTTTGAACTCGTTGAGTTGAGTCCGAGTTC
1 TTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAGTTGAGTCCGAGTTC
66848169 GTGAAATGTAACTAGGCATCCGAGCTCG
66 GTGAAATGTAACTAGGCATCCGAGCTCG
* * * * ** *
66848197 TTGATTTGAGTCTAAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAGTTGAGTCTGAGTTC
1 TTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAGTTGAGTCCGAGTTC
*
66848262 GTGAGATGTAACTAGGCATCCGAGCTCG
66 GTGAAATGTAACTAGGCATCCGAGCTCG
* * *
66848290 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAGCTTGTTGAGTTGAGTCCGAGTTC
1 TTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAGTTGAGTCCGAGTTC
66848355 G
66 G
66848356 CTTATGGGCG
Statistics
Matches: 140, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 140 1.00
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (93 bp):
TTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAGTTGAGTCCGAGTTC
GTGAAATGTAACTAGGCATCCGAGCTCG
Found at i:66855596 original size:46 final size:46
Alignment explanation
Indices: 66855439--66855799 Score: 183
Period size: 46 Copynumber: 7.7 Consensus size: 46
66855429 TGTGTGAGCT
* * * * *
66855439 AGTGTAAGACATGT-TCGGGACATGCATCAGCCAC-ACTAGGAAAGCC
1 AGTGTAAGACATGTCT-GGGACATGCATCGGCCTCGA-GATGTAAGCC
* *
66855485 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATG--AGCGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGC-C
*
66855532 TAGTGTAAGACAT-TCTGGGATATGCATCGGCCTCGAGATGTAAGCC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
* * **
66855578 AGTGCAAGACATGTCTGGGACATGCATTGG-CTACGAGATGT--TTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
* * * * * *
66855622 AGAGTAAGACCATGTGTGGGACATAGCATCTGCAC-AGATATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGATGT-A-AGCC
** * *
66855672 AGTGTAAGACCATGTCTGGGACATGGTGTCGGCCT--AGATTTCGATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGT--A-AGCC
* * *
66855721 AGTTTAAGACCATGTCTGGGACATGACATC-GACTTGATGGATG--AGCC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGA--GATGTAAGCC
*
66855768 AGTGTAAGACCATGTATGGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
66855800 TATTATACCC
Statistics
Matches: 245, Mismatches: 43, Indels: 52
0.72 0.13 0.15
Matches are distributed among these distances:
44 8 0.03
45 41 0.17
46 56 0.23
47 48 0.20
48 30 0.12
49 31 0.13
50 28 0.11
52 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:66860112 original size:45 final size:45
Alignment explanation
Indices: 66860045--66860180 Score: 191
Period size: 45 Copynumber: 3.0 Consensus size: 45
66860035 ATATTTTATC
*
66860045 ATAAACATGATTAAAAACGAGTAAGACCATAATTGAAAGACGCTATA
1 ATAAA-ATGATT-AAAACGAGTAAGACCATAGTTGAAAGACGCTATA
* *
66860092 ATAAAATGATTAAAACGAGTAAGACCATAGTTGAAAGACGCCATG
1 ATAAAATGATTAAAACGAGTAAGACCATAGTTGAAAGACGCTATA
* * * *
66860137 ACAATATGATTAAAACGAGTAAGACCATAGTTGGAAGATGCTAT
1 ATAAAATGATTAAAACGAGTAAGACCATAGTTGAAAGACGCTAT
66860181 GGCATCATGA
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 70 0.86
46 6 0.07
47 5 0.06
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.22
Consensus pattern (45 bp):
ATAAAATGATTAAAACGAGTAAGACCATAGTTGAAAGACGCTATA
Found at i:66860892 original size:10 final size:9
Alignment explanation
Indices: 66860872--66860901 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
66860862 TGTGAAATGG
66860872 TTTTA-TTT
1 TTTTATTTT
66860880 TTTTATTTT
1 TTTTATTTT
66860889 TTTTATTTT
1 TTTTATTTT
66860898 TTTT
1 TTTT
66860902 GCCATGAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.24
9 16 0.76
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTATTTT
Found at i:66866907 original size:31 final size:31
Alignment explanation
Indices: 66866841--66866909 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
66866831 GATAATTTCT
* * * * *
66866841 TAACCATCCACATCCCGCTAAGTCCTATAAT
1 TAACCACCCACATCCCACTAAGTCCCACAAA
*
66866872 TAACCACCCACATCTCACTAAGTCCCACAAA
1 TAACCACCCACATCCCACTAAGTCCCACAAA
66866903 TAACCAC
1 TAACCAC
66866910 TCACCAGATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.36, C:0.39, G:0.04, T:0.20
Consensus pattern (31 bp):
TAACCACCCACATCCCACTAAGTCCCACAAA
Found at i:66869889 original size:15 final size:15
Alignment explanation
Indices: 66869869--66869899 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
66869859 ACAGTAATTG
66869869 TATCAATTAAAATAA
1 TATCAATTAAAATAA
66869884 TATCAATTAAAATAA
1 TATCAATTAAAATAA
66869899 T
1 T
66869900 TTTTCTCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (15 bp):
TATCAATTAAAATAA
Found at i:66872529 original size:2 final size:2
Alignment explanation
Indices: 66872524--66872548 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
66872514 ATATGCATGC
66872524 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
66872549 CTCTCCCTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:66874713 original size:23 final size:23
Alignment explanation
Indices: 66874668--66874715 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
66874658 ATAAATAATT
* *
66874668 TATTAAAATATTAATCATAAAAA
1 TATTAAAATATTAATAAAAAAAA
66874691 TATTAAAATA-TAATAAAACAAAA
1 TATTAAAATATTAATAAAA-AAAA
66874714 TA
1 TA
66874716 GTTTTACACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (23 bp):
TATTAAAATATTAATAAAAAAAA
Found at i:66874974 original size:45 final size:45
Alignment explanation
Indices: 66874910--66874999 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
66874900 CATGACACCC
66874910 ATATCAACACCTTTACTCCAATTCTTGCTCTCTTAAAACTAAAAA
1 ATATCAACACCTTTACTCCAATTCTTGCTCTCTTAAAACTAAAAA
66874955 ATATCAACACCTTTACTCCAATTCTTGCTCTCTTAAAACTAAAAA
1 ATATCAACACCTTTACTCCAATTCTTGCTCTCTTAAAACTAAAAA
66875000 GATAAATAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.38, C:0.27, G:0.02, T:0.33
Consensus pattern (45 bp):
ATATCAACACCTTTACTCCAATTCTTGCTCTCTTAAAACTAAAAA
Found at i:66876205 original size:16 final size:16
Alignment explanation
Indices: 66876160--66876216 Score: 64
Period size: 16 Copynumber: 3.5 Consensus size: 16
66876150 TTGTTTTTGA
66876160 ATTTTTATGAATTTT-C
1 ATTTTTAT-AATTTTAC
66876176 ATATTTTA-AATTTTAC
1 AT-TTTTATAATTTTAC
*
66876192 ATTTTTATAATTTTAA
1 ATTTTTATAATTTTAC
66876208 ATTATTTAT
1 ATT-TTTAT
66876217 TGATGTGGCA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
15 11 0.31
16 15 0.42
17 10 0.28
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (16 bp):
ATTTTTATAATTTTAC
Found at i:66876967 original size:31 final size:31
Alignment explanation
Indices: 66876910--66876977 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
66876900 CTTAACAACT
*
66876910 AGTGACATTAATAAAAACTTTTGAATAGTTC
1 AGTGACATTAATAAAAACTTTCGAATAGTTC
* *
66876941 AGTGAC-TTAAATGAAAAGTTTCGAATAGTTC
1 AGTGACATT-AATAAAAACTTTCGAATAGTTC
*
66876972 AATGAC
1 AGTGAC
66876978 CATTTTTGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 2 0.06
31 30 0.94
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.32
Consensus pattern (31 bp):
AGTGACATTAATAAAAACTTTCGAATAGTTC
Found at i:66877535 original size:25 final size:24
Alignment explanation
Indices: 66877482--66877526 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
66877472 AAACTTCAAA
66877482 ATATTTTTTATTTAAATTAAAAAAT
1 ATATTTTTTATTT-AATTAAAAAAT
66877507 ATATTTTTTA-TT-ATTAAAAA
1 ATATTTTTTATTTAATTAAAAA
66877527 TATTTATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
ATATTTTTTATTTAATTAAAAAAT
Found at i:66877585 original size:15 final size:16
Alignment explanation
Indices: 66877567--66877597 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
66877557 TCTTATTTCA
66877567 TATTTTT-ATATTATT
1 TATTTTTAATATTATT
66877582 TATTTTTAATATTATT
1 TATTTTTAATATTATT
66877598 CTTCTTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTTTAATATTATT
Found at i:66877724 original size:18 final size:17
Alignment explanation
Indices: 66877684--66877729 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
66877674 AAATAATAAC
66877684 AAAATTTT-AAAATACT
1 AAAATTTTAAAAATACT
* *
66877700 AACATTTTAAAAATCTCT
1 AAAATTTTAAAAAT-ACT
66877718 AAAATTTTAAAA
1 AAAATTTTAAAA
66877730 TTTCTCATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 7 0.28
17 5 0.20
18 13 0.52
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAATTTTAAAAATACT
Found at i:66880342 original size:27 final size:27
Alignment explanation
Indices: 66880295--66880358 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
66880285 AAATATTCTC
66880295 TAAATTAAT-AAATATTAATTTATCGA
1 TAAATTAATAAAATATTAATTTATCGA
*
66880321 TAAATTAATAAAATATTCATTTATCGA
1 TAAATTAATAAAATATTAATTTATCGA
*
66880348 TAAACTAATAA
1 TAAATTAATAA
66880359 CCCTGATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 9 0.26
27 26 0.74
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (27 bp):
TAAATTAATAAAATATTAATTTATCGA
Found at i:66880864 original size:11 final size:11
Alignment explanation
Indices: 66880845--66880900 Score: 52
Period size: 9 Copynumber: 5.5 Consensus size: 11
66880835 TAAGTTACTT
*
66880845 TATACTTTATA
1 TATAATTTATA
66880856 TATAATTTA-A
1 TATAATTTATA
66880866 TATAATATT-T-
1 TATAAT-TTATA
66880876 TA-AATTTATA
1 TATAATTTATA
66880886 T-T-ATTTATA
1 TATAATTTATA
66880895 TATAAT
1 TATAAT
66880901 CTATGAAGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
8 2 0.05
9 12 0.32
10 11 0.30
11 12 0.32
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (11 bp):
TATAATTTATA
Found at i:66884651 original size:21 final size:22
Alignment explanation
Indices: 66884633--66884678 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
66884623 TCATAACAGT
*
66884633 TCAGATA-AAATGCAGAACATA
1 TCAGATATAAATACAGAACATA
*
66884654 TCAGATATAAATACAGAACAAA
1 TCAGATATAAATACAGAACATA
66884676 TCA
1 TCA
66884679 AAATCAGATG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.54, C:0.15, G:0.11, T:0.20
Consensus pattern (22 bp):
TCAGATATAAATACAGAACATA
Found at i:66890445 original size:2 final size:2
Alignment explanation
Indices: 66890438--66890463 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
66890428 AGTATAGTTG
66890438 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
66890464 GTATGCATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66891048 original size:29 final size:29
Alignment explanation
Indices: 66891009--66891083 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
66890999 GGTTGAGAGA
* *
66891009 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
66891038 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
66891067 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
66891084 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:66900595 original size:20 final size:21
Alignment explanation
Indices: 66900541--66900603 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
66900531 TTTCAAATTG
*
66900541 CAATGTACTAAATTTCAAAAC-
1 CAATTTAC-AAATTTCAAAACT
*
66900562 CAATTTACAGATTTCAAAACT
1 CAATTTACAAATTTCAAAACT
**
66900583 CTGTTTA-AAATTTTCAAAACT
1 CAATTTACAAA-TTTCAAAACT
66900604 TCGATTAACT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 13 0.37
21 22 0.63
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.35
Consensus pattern (21 bp):
CAATTTACAAATTTCAAAACT
Found at i:66902992 original size:13 final size:13
Alignment explanation
Indices: 66902974--66902999 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66902964 AGCCTGGCAA
66902974 TCATGTCACACGG
1 TCATGTCACACGG
66902987 TCATGTCACACGG
1 TCATGTCACACGG
66903000 ACGTGTCCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (13 bp):
TCATGTCACACGG
Found at i:66916415 original size:14 final size:14
Alignment explanation
Indices: 66916396--66916425 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
66916386 GTGTTTAGGT
66916396 TGAAATTGATCTAG
1 TGAAATTGATCTAG
66916410 TGAAATTGATCTAG
1 TGAAATTGATCTAG
66916424 TG
1 TG
66916426 TTAGCCTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (14 bp):
TGAAATTGATCTAG
Found at i:66922138 original size:2 final size:2
Alignment explanation
Indices: 66922131--66922163 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
66922121 ACTCTAAACT
66922131 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
66922164 TAGTTTTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:66922501 original size:3 final size:3
Alignment explanation
Indices: 66922490--66922539 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
66922480 GTTTATTATG
*
66922490 AAT ACT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
66922538 AA
1 AA
66922540 AGAAAGTATT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:66923064 original size:25 final size:22
Alignment explanation
Indices: 66923033--66923090 Score: 71
Period size: 25 Copynumber: 2.5 Consensus size: 22
66923023 ACAACGACTC
*
66923033 AATTTTAAATAAAATTATAATTAAT
1 AATTTTAAATAAAACTAT-A--AAT
*
66923058 AATTTTAAATTAAACTATAAAT
1 AATTTTAAATAAAACTATAAAT
66923080 AATTTTAAATA
1 AATTTTAAATA
66923091 TTAAGTCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.43
24 1 0.03
25 16 0.53
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AATTTTAAATAAAACTATAAAT
Found at i:66925554 original size:10 final size:10
Alignment explanation
Indices: 66925539--66925571 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
66925529 AAAAAATATA
66925539 ATTTTTTAAT
1 ATTTTTTAAT
66925549 ATTTTTTAA-
1 ATTTTTTAAT
*
66925558 AATTTTTAAT
1 ATTTTTTAAT
66925568 ATTT
1 ATTT
66925572 AAAAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
ATTTTTTAAT
Found at i:66929402 original size:17 final size:17
Alignment explanation
Indices: 66929380--66929421 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
66929370 GCCATGTAAG
*
66929380 TAATTAATTAATTTTTT
1 TAATTAATTAATATTTT
*
66929397 TAATTAA-AAATATTTT
1 TAATTAATTAATATTTT
*
66929413 TAAATAATT
1 TAATTAATT
66929422 CTTAAAATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TAATTAATTAATATTTT
Found at i:66930883 original size:12 final size:12
Alignment explanation
Indices: 66930866--66930904 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
66930856 TCTATATTTT
66930866 TAATTTTTTTGA
1 TAATTTTTTTGA
66930878 TAA-TTTTTTG-
1 TAATTTTTTTGA
66930888 T-ATTTTTTT-A
1 TAATTTTTTTGA
66930898 TAATTTT
1 TAATTTT
66930905 CACGGATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
9 1 0.04
10 8 0.33
11 12 0.50
12 3 0.12
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (12 bp):
TAATTTTTTTGA
Found at i:66930885 original size:20 final size:20
Alignment explanation
Indices: 66930862--66930904 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
66930852 TCTTTCTATA
66930862 TTTTT-AATTTTTTTGATAAT
1 TTTTTGAATTTTTTT-ATAAT
*
66930882 TTTTTGTATTTTTTTATAAT
1 TTTTTGAATTTTTTTATAAT
66930902 TTT
1 TTT
66930905 CACGGATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTTTGAATTTTTTTATAAT
Found at i:66932844 original size:2 final size:2
Alignment explanation
Indices: 66932837--66932877 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
66932827 AATAACATCC
66932837 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
66932878 TCCACAATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:66940120 original size:21 final size:21
Alignment explanation
Indices: 66940071--66940117 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
66940061 TTTCCTAATA
*
66940071 TGTGAATTGGATTGAATTGAG
1 TGTGAATTGGATTAAATTGAG
* *
66940092 TATGAATTGTATTAAATTG-G
1 TGTGAATTGGATTAAATTGAG
66940112 TGTGAA
1 TGTGAA
66940118 ATTTACTCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.32, C:0.00, G:0.28, T:0.40
Consensus pattern (21 bp):
TGTGAATTGGATTAAATTGAG
Found at i:66940719 original size:24 final size:23
Alignment explanation
Indices: 66940692--66940737 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
66940682 CCTGTTACAT
* *
66940692 GGCTCTTTGTGAGCATTCTTGATA
1 GGCTCTTCGTGAGC-TTCCTGATA
66940716 GGCTCTTCGTGAGCTTCCTGAT
1 GGCTCTTCGTGAGCTTCCTGAT
66940738 TAAAAGTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.13, C:0.22, G:0.26, T:0.39
Consensus pattern (23 bp):
GGCTCTTCGTGAGCTTCCTGATA
Found at i:66946440 original size:17 final size:16
Alignment explanation
Indices: 66946407--66946450 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
66946397 ATACGATGTT
*
66946407 TTGGATATTAGATTAAA
1 TTGGATGTTA-ATTAAA
66946424 TTGTGATGTTAATTAAA
1 TTG-GATGTTAATTAAA
66946441 TTGGATGTTA
1 TTGGATGTTA
66946451 TAATTGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 7 0.28
17 12 0.48
18 6 0.24
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.45
Consensus pattern (16 bp):
TTGGATGTTAATTAAA
Found at i:66946879 original size:25 final size:25
Alignment explanation
Indices: 66946851--66946899 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
66946841 TATATGTATA
66946851 TGACATGAATTATAATCTTGAAAGG
1 TGACATGAATTATAATCTTGAAAGG
66946876 TGACATGAATTATAATCTTGAAAG
1 TGACATGAATTATAATCTTGAAAG
66946900 TTAACACGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (25 bp):
TGACATGAATTATAATCTTGAAAGG
Found at i:66948301 original size:38 final size:38
Alignment explanation
Indices: 66948250--66948327 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
66948240 CTCAGACTGA
66948250 ATGTAGCATGCTCAGAGTGTAAAAATACATGCCACTTT
1 ATGTAGCATGCTCAGAGTGTAAAAATACATGCCACTTT
66948288 ATGTAGCATGCTCAGAGTGTAAAAATACATGCCACTTT
1 ATGTAGCATGCTCAGAGTGTAAAAATACATGCCACTTT
66948326 AT
1 AT
66948328 AACCTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (38 bp):
ATGTAGCATGCTCAGAGTGTAAAAATACATGCCACTTT
Found at i:66949785 original size:43 final size:42
Alignment explanation
Indices: 66949689--66949788 Score: 130
Period size: 42 Copynumber: 2.4 Consensus size: 42
66949679 GACTTATGAT
66949689 TTACGTGTAAGACCATGTCTAGGACATCGACATCGTATTTGA
1 TTACGTGTAAGACCATGTCTAGGACATCGACATCGTATTTGA
** * *
66949731 TTTTGTGTAAGACCCTGTCTAGGACAGT-GGCATCGATATTTGA
1 TTACGTGTAAGACCATGTCTAGGACA-TCGACATCG-TATTTGA
*
66949774 TTACATGTAAGACCA
1 TTACGTGTAAGACCA
66949789 CGTTTGGGAA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 29 0.60
43 19 0.40
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTAGGACATCGACATCGTATTTGA
Found at i:66954658 original size:40 final size:39
Alignment explanation
Indices: 66954493--66954676 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
66954483 AAATTGAATG
* * *
66954493 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
66954533 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
66954573 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
66954613 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
66954652 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
66954677 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:66954701 original size:80 final size:81
Alignment explanation
Indices: 66954533--66954721 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
66954523 GCTGGAAATT
* * * *
66954533 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
66954598 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
66954614 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
66954677 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
66954693 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
66954722 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:66962777 original size:40 final size:39
Alignment explanation
Indices: 66962612--66962795 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
66962602 AAATTGAATG
* * *
66962612 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
66962652 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
66962692 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
66962732 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
66962771 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
66962796 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:66962820 original size:80 final size:81
Alignment explanation
Indices: 66962652--66962840 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
66962642 GCTGGAAATT
* * * *
66962652 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
66962717 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
66962733 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
66962796 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
66962812 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
66962841 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:66972514 original size:93 final size:93
Alignment explanation
Indices: 66972402--66972573 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
66972392 ACCCATAAGT
* *
66972402 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
66972467 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
66972495 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
66972560 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
66972574 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:66972569 original size:46 final size:46
Alignment explanation
Indices: 66972394--66972569 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
66972384 TGTAACCCAC
* * *
66972394 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
66972440 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
66972490 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
66972533 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
66972570 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:66978889 original size:20 final size:20
Alignment explanation
Indices: 66978861--66978910 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
66978851 ATGTTGTCCT
* * *
66978861 ATGAGTAGTGGGGTCAAGTC
1 ATGAATAGTGGAGTCAAATC
66978881 ATGAATAGTGGAGTCAAATC
1 ATGAATAGTGGAGTCAAATC
*
66978901 ATGAACAGTG
1 ATGAATAGTG
66978911 ATAATATGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.10, G:0.32, T:0.24
Consensus pattern (20 bp):
ATGAATAGTGGAGTCAAATC
Found at i:66981426 original size:50 final size:50
Alignment explanation
Indices: 66981261--66981596 Score: 310
Period size: 50 Copynumber: 6.8 Consensus size: 50
66981251 AGGGTTATTC
* * *
66981261 GAGAGCTAGTGTAAGACCATGTCTTGGACATGGCATTGGC-CTCG---GCAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACT-GATAG-AT
* * *
66981309 GTGAGCCAGTGTAAGACCATGTCTGGGACATGGAATCGGCATTGAT-G-T
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATAGAT
** * * * *
66981357 GACTGCTAGTGTAAGACCATGTATGGCACATTGCATCGGCACTGATAGAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATAGAT
* * * *
66981407 GAGAGCCAGTGTAAGACCATGTCTGGGACAAGGCATCGGCACAGATGGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATAGAT
* * * * * * *
66981457 GAGAGTCAGTGTAAGGCCATGTTTGGGACATGGCATTGGC-CTCGACAAAA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACT-GATAGAT
* * * * *
66981507 GAGATCTAGTGTAAGACCATGTCTGGGACATGGCGTCAGC-CTCGATACAT
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACT-GATAGAT
* *
66981557 GATAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
66981597 TTTCTACCCT
Statistics
Matches: 230, Mismatches: 52, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
48 74 0.32
49 3 0.01
50 153 0.67
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (50 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGATAGAT
Found at i:66984392 original size:27 final size:26
Alignment explanation
Indices: 66984344--66984403 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
66984334 GCTAGGCTAC
*
66984344 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
66984371 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
66984397 CAGATAT
1 CAGATAT
66984404 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:66984407 original size:2 final size:2
Alignment explanation
Indices: 66984400--66984435 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
66984390 ACCAGAACAG
66984400 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66984436 GGTGAAGCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66984787 original size:8 final size:8
Alignment explanation
Indices: 66984776--66984809 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
66984766 AGTGGGCTCG
*
66984776 TTGGCCCG
1 TTGGCCCA
66984784 TTGGCCCA
1 TTGGCCCA
66984792 TTGGCCCA
1 TTGGCCCA
66984800 TTGGCCCA
1 TTGGCCCA
66984808 TT
1 TT
66984810 TTCGGCCCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.09, C:0.35, G:0.26, T:0.29
Consensus pattern (8 bp):
TTGGCCCA
Found at i:66991520 original size:50 final size:49
Alignment explanation
Indices: 66991392--66991724 Score: 334
Period size: 50 Copynumber: 6.8 Consensus size: 49
66991382 GGGTCATTCT
* *
66991392 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATG-TG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGATGATG
* * *
66991440 AGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGACACT-GATAGATG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACA-TAGAT-GATG
* *
66991490 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT-TAGCATAGATGGACG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATAGAT-GATG
* * * *
66991540 AGAGTCAGTTTAAGACCATGTCTGGGACATGGCAT-TAGCATAGATGGACG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATAGAT-GATG
* * * * * * *
66991590 AGAGTCAGTTTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATACATG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAT-GATG
* * * * *
66991640 ATAGTCAGTGTAAGACCATGTCTGGGACATAGCATCGACTTTGAT-ATG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGATGATG
* * *
66991688 TGAGCTAGTGTAAGACCATGTCTGGGACAGGGCATCG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
66991725 GCTTCCTACC
Statistics
Matches: 248, Mismatches: 31, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
48 75 0.30
49 4 0.02
50 169 0.68
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (49 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGATGATG
Found at i:67023627 original size:27 final size:27
Alignment explanation
Indices: 67023589--67023709 Score: 154
Period size: 27 Copynumber: 4.5 Consensus size: 27
67023579 AAGTACCCCA
* *
67023589 ATTTACATAATTATCGTTTTACCTTCG
1 ATTTACAGAATTATCGTTTTACCCTCG
*
67023616 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTATCGTTTTACCCTCG
* * *
67023643 ATTTATAGAATTA-CTATTTTACCCTTG
1 ATTTACAGAATTATC-GTTTTACCCTCG
*
67023670 ATTTACAGAATTATTGTTTTACCCTCG
1 ATTTACAGAATTATCGTTTTACCCTCG
*
67023697 ATTTACAAAATTA
1 ATTTACAGAATTA
67023710 CTAAAATACC
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 80 0.99
ACGTcount: A:0.30, C:0.18, G:0.08, T:0.44
Consensus pattern (27 bp):
ATTTACAGAATTATCGTTTTACCCTCG
Found at i:67023663 original size:54 final size:54
Alignment explanation
Indices: 67023605--67023738 Score: 164
Period size: 54 Copynumber: 2.5 Consensus size: 54
67023595 ATAATTATCG
* *
67023605 TTTTA-CCTTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTA
1 TTTTACCCTT-GATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTA
**
67023659 TTTTACCCTTGATTTACAGAATTATTGTTTTACCCTCGATTTACAAAATTACTA
1 TTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTA
*** *
67023713 AAATACCCTT-AGTTTACAAAATTACC
1 TTTTACCCTTGA-TTTACAGAATTACC
67023739 AAAATACCCT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 63 0.93
55 4 0.06
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.41
Consensus pattern (54 bp):
TTTTACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTA
Found at i:67023719 original size:27 final size:27
Alignment explanation
Indices: 67023689--67023936 Score: 170
Period size: 27 Copynumber: 9.2 Consensus size: 27
67023679 ATTATTGTTT
* *
67023689 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
67023716 TACCCT-TAGTTTACAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* *
67023743 TACCCTCGA-TCAGTAAAATTACCGAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * * * *
67023770 TACCCT-GGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
67023796 TA-CCTCTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* *
67023823 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * * *
67023850 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
* *
67023877 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
67023904 TACCGCT-AATTTACAAAATTA-CAGAAA
1 TACC-CTCGATTTATAAAATTACCA-AAA
67023931 TACCCT
1 TACCCT
67023937 TTGACTTTCT
Statistics
Matches: 180, Mismatches: 28, Indels: 27
0.77 0.12 0.11
Matches are distributed among these distances:
25 3 0.02
26 23 0.13
27 148 0.82
28 6 0.03
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:67023736 original size:81 final size:81
Alignment explanation
Indices: 67023589--67023737 Score: 174
Period size: 81 Copynumber: 1.8 Consensus size: 81
67023579 AAGTACCCCA
* * * **** * * *
67023589 ATTTACATAATTATCGTTTTACCTTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAAT
1 ATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTAGATTTACAAAAT
67023654 TACTATTTTACCCTTG
66 TACTATTTTACCCTTG
* *
67023670 ATTTACAGAATTATTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAG-TTTACAAAA
1 ATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAAAATACCC-TAGATTTACAAAA
67023734 TTAC
65 TTAC
67023738 CAAAATACCC
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
81 53 0.96
82 2 0.04
ACGTcount: A:0.32, C:0.19, G:0.07, T:0.42
Consensus pattern (81 bp):
ATTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTAGATTTACAAAAT
TACTATTTTACCCTTG
Found at i:67023747 original size:54 final size:54
Alignment explanation
Indices: 67023689--67024020 Score: 228
Period size: 54 Copynumber: 6.1 Consensus size: 54
67023679 ATTATTGTTT
* **
67023689 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * * * * *
67023743 TACCCTCGA-TCAGTAAAATTACCGAAATACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* ** *
67023796 TA-CCTCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* *** * * *
67023850 TACCACT-GGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTCGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
67023904 TACCGCT-AATTTACAAAATTA-CAGAAATACCCTTTGACTTTCTAAAAATTA-TAGAAA
1 TACC-CTCGATTTACAAAATTACCA-AAATACCC-TT-AGTTTGT-AAAATTACCA-AAA
* * * *** * *
67023961 TACCATTGGTTTACAAAATTATTGAAATACCCTTAGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
*
67024015 CACCCT
1 TACCCT
67024021 TGTAGGATGA
Statistics
Matches: 218, Mismatches: 46, Indels: 28
0.75 0.16 0.10
Matches are distributed among these distances:
52 4 0.02
53 39 0.18
54 122 0.56
55 8 0.04
56 11 0.05
57 34 0.16
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:67023922 original size:81 final size:80
Alignment explanation
Indices: 67023757--67023936 Score: 211
Period size: 81 Copynumber: 2.2 Consensus size: 80
67023747 CTCGATCAGT
* * * **
67023757 AAAATTACCGAAATACCCTGGTCTGTAAAATTGCTAAAATACCTCTGGTTTGTAAAATTACCAAA
1 AAAATTACCAAAATACCCTGGTCTGTAAAATTACCAAAATACCTCTAATTTGTAAAATTACCAAA
* **
67023822 ATACCCCTAGTTTGT
66 ATACCCCTAATTTAC
* * *
67023837 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACC-CTCAATTTGTAAAATTACCA
1 AAAATTACCAAAATACC-CTGGTCTGTAAAATTACCAAAATACCTCT-AATTTGTAAAATTACCA
*
67023901 AAATACCGCTAATTTAC
64 AAATACCCCTAATTTAC
67023918 AAAATTA-CAGAAATACCCT
1 AAAATTACCA-AAATACCCT
67023937 TTGACTTTCT
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
80 22 0.26
81 63 0.74
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGGTCTGTAAAATTACCAAAATACCTCTAATTTGTAAAATTACCAAA
ATACCCCTAATTTAC
Found at i:67023999 original size:27 final size:27
Alignment explanation
Indices: 67023913--67023999 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
67023903 ATACCGCTAA
* *
67023913 TTTACAAAATTACAGAAATACCCTTTGAC
1 TTTACAAAATTATAGAAATACCC-TT-AG
* *
67023942 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTATAGAAATACCCTTAG
*
67023970 TTTACAAAATTATTGAAATACCCTTAG
1 TTTACAAAATTATAGAAATACCCTTAG
67023997 TTT
1 TTT
67024000 GTAGATTTAC
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
27 22 0.46
28 4 0.08
29 6 0.12
30 16 0.33
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCCTTAG
Found at i:67024083 original size:27 final size:27
Alignment explanation
Indices: 67024052--67024144 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
67024042 TACCCCTATT
*
67024052 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
* *
67024079 GGGTAAAGTGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
* *
67024106 AGGTAAAGTGACTGTAATA-CCCCTGTA
1 AGGTAAAATGACCGTAA-AGCCCCTGTA
*
67024133 TGGTAAAATGAC
1 AGGTAAAATGAC
67024145 GAATATGCCC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.20
Consensus pattern (27 bp):
AGGTAAAATGACCGTAAAGCCCCTGTA
Found at i:67025011 original size:24 final size:25
Alignment explanation
Indices: 67024953--67025021 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
67024943 ACGAAGTGCT
*
67024953 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
67024978 AAAAGAGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
67025002 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
67025022 ATTAAAAAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 19 0.47
25 21 0.52
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:67025029 original size:24 final size:24
Alignment explanation
Indices: 67024953--67025034 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 24
67024943 ACGAAGTGCT
* ***
67024953 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAG-TTATTA
* *
67024978 AAAAGAGCTTTGCCCCAGTT-TATC
1 AAAAGGGCTTTGCCCCAGTTAT-TA
67025002 AAAAGGGCTTTGCCCCAGTTATTA
1 AAAAGGGCTTTGCCCCAGTTATTA
*
67025026 AAAAAGGCT
1 AAAAGGGCT
67025035 AGGCCTCCAG
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
24 30 0.64
25 17 0.36
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTATTA
Found at i:67025278 original size:31 final size:31
Alignment explanation
Indices: 67025241--67025380 Score: 226
Period size: 31 Copynumber: 4.5 Consensus size: 31
67025231 GTTTACAGTA
* *
67025241 AAGGCTTCGGCTCAGTGATATGATTTATGAA
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
* *
67025272 AAGGCTTCGGCCCAGAGATATAATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
*
67025303 AAGGCTTCAGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
*
67025334 AAGCCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
67025365 AAGGCTTCGGCCCAGT
1 AAGGCTTCGGCCCAGT
67025381 AACCGTTAAA
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 99 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTGATATGATTTATGAT
Found at i:67026169 original size:26 final size:26
Alignment explanation
Indices: 67026141--67026233 Score: 98
Period size: 26 Copynumber: 3.6 Consensus size: 26
67026131 TGTTACACTG
***
67026141 ACCAACTCAAACTTAAGGGTCCTTGG
1 ACCAACTCAAACTTAAGGGTCCTCAA
* ** *
67026167 ACCCACTCAAACTTAAGGAACCTCCA
1 ACCAACTCAAACTTAAGGGTCCTCAA
67026193 ACCAACTCAAA-TTCAAGGGTCCTCAA
1 ACCAACTCAAACTT-AAGGGTCCTCAA
*
67026219 ACCCACTCAAACTTA
1 ACCAACTCAAACTTA
67026234 GGAGACCTCT
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
25 2 0.04
26 50 0.93
27 2 0.04
ACGTcount: A:0.37, C:0.33, G:0.11, T:0.19
Consensus pattern (26 bp):
ACCAACTCAAACTTAAGGGTCCTCAA
Done.