Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 223 of 335
Found at i:67026223 original size:52 final size:52
Alignment explanation
Indices: 67026141--67026242 Score: 145
Period size: 52 Copynumber: 2.0 Consensus size: 52
67026131 TGTTACACTG
***
67026141 ACCAACTCAAACTTAAGGGTCCTTGGACCCACTCAAACTTAAGGA-ACCTCCA
1 ACCAACTCAAACTTAAGGGTCCTCAAACCCACTCAAACTT-AGGAGACCTCCA
67026193 ACCAACTCAAA-TTCAAGGGTCCTCAAACCCACTCAAACTTAGGAGACCTC
1 ACCAACTCAAACTT-AAGGGTCCTCAAACCCACTCAAACTTAGGAGACCTC
67026243 TGACCCATCT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
51 6 0.13
52 39 0.87
ACGTcount: A:0.35, C:0.33, G:0.13, T:0.19
Consensus pattern (52 bp):
ACCAACTCAAACTTAAGGGTCCTCAAACCCACTCAAACTTAGGAGACCTCCA
Found at i:67026248 original size:26 final size:26
Alignment explanation
Indices: 67026138--67026249 Score: 95
Period size: 26 Copynumber: 4.3 Consensus size: 26
67026128 GGGTGTTACA
* *
67026138 CTGACCAACTCAAACTTAAGGGTCCT
1 CTGACCCACTCAAACTTAAGGGACCT
*
67026164 -TGGACCCACTCAAACTTAAGGAACCT
1 CT-GACCCACTCAAACTTAAGGGACCT
** * *
67026190 CCAACCAACTCAAA-TTCAAGGGTCCT
1 CTGACCCACTCAAACTT-AAGGGACCT
**
67026216 CAAACCCACTCAAACTT-AGGAGACCT
1 CTGACCCACTCAAACTTAAGG-GACCT
67026242 CTGACCCA
1 CTGACCCA
67026250 TCTTGACTCC
Statistics
Matches: 68, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
25 6 0.09
26 60 0.88
27 2 0.03
ACGTcount: A:0.34, C:0.34, G:0.13, T:0.19
Consensus pattern (26 bp):
CTGACCCACTCAAACTTAAGGGACCT
Found at i:67028135 original size:87 final size:87
Alignment explanation
Indices: 67027988--67028176 Score: 256
Period size: 87 Copynumber: 2.2 Consensus size: 87
67027978 GTAACGAGAT
*
67027988 TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTGGAAAAATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTCGAAAAATATGGCACT
* *
67028053 GAGTGTGCATGCTGGAAAT-ATA
66 GAGTGTGCAGGCT-GAAATCACA
* ***
67028075 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGC-ATGCTCGAAAAATATGGCAC
* * *
67028139 TGTGTGTGCAGGCTTAAATCGCA
65 TGAGTGTGCAGGCTGAAATCACA
67028162 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
67028177 GAAATCGAGT
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
86 4 0.04
87 85 0.94
88 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (87 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTAAGTGTGCATGCTCGAAAAATATGGCACT
GAGTGTGCAGGCTGAAATCACA
Found at i:67028139 original size:29 final size:29
Alignment explanation
Indices: 67027988--67028118 Score: 235
Period size: 29 Copynumber: 4.5 Consensus size: 29
67027978 GTAACGAGAT
67027988 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
67028017 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
67028046 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
67028075 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
67028104 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
67028119 GAGCTCGAAG
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 99 1.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:67028174 original size:29 final size:28
Alignment explanation
Indices: 67027988--67028176 Score: 119
Period size: 29 Copynumber: 6.5 Consensus size: 28
67027978 GTAACGAGAT
* * **
67027988 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCAGGCT-CAAATGTA
* * **
67028017 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCAGGCT-CAAATGTA
* * * *
67028046 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCAGGCT-CAAATGTA
* * *
67028075 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCAGGCT-CAAATGTA
**
67028104 TGGCACTAAGTGTGC-GAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCAG-GCTC-AAATGTA
** * *
67028133 TGGCACTGTGTGTGCAGGCTTAAATCGCA
1 TGGCACTAAGTGTGCAGGCTCAAAT-GTA
67028162 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
67028177 GAAATCGAGT
Statistics
Matches: 140, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
28 2 0.01
29 137 0.98
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (28 bp):
TGGCACTAAGTGTGCAGGCTCAAATGTA
Found at i:67031444 original size:9 final size:9
Alignment explanation
Indices: 67031430--67031473 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
67031420 ATTATTTCAT
67031430 TAATTAAAC
1 TAATTAAAC
67031439 TAATTAAAC
1 TAATTAAAC
* *
67031448 AAATTTAAC
1 TAATTAAAC
67031457 TAAATCTAAAC
1 T-AAT-TAAAC
67031468 TAATTA
1 TAATTA
67031474 TAATTAATAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 18 0.62
10 6 0.21
11 5 0.17
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (9 bp):
TAATTAAAC
Found at i:67032415 original size:2 final size:2
Alignment explanation
Indices: 67032410--67032458 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
67032400 TATATATGTA
67032410 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
67032452 TG TG TG T
1 TG TG TG T
67032459 TGCACCCGAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:67035349 original size:2 final size:2
Alignment explanation
Indices: 67035342--67035376 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
67035332 CTTAAATCTT
67035342 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67035377 TGTTATATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:67037422 original size:40 final size:40
Alignment explanation
Indices: 67037356--67037506 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
67037346 AAATTGAATG
* * *
67037356 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
67037395 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
67037435 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
67037475 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
67037507 ACATGCTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:67037520 original size:40 final size:39
Alignment explanation
Indices: 67037393--67037522 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
67037383 ATGCTGGAAA
* * *
67037393 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
67037434 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
67037472 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
67037513 TTATATCCGG
1 TTATATCCGG
67037523 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:67044617 original size:40 final size:40
Alignment explanation
Indices: 67044551--67044701 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
67044541 AAATTGAATG
* * *
67044551 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
67044590 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
67044630 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
67044670 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
67044702 ACATGCTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:67044715 original size:40 final size:39
Alignment explanation
Indices: 67044588--67044717 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
67044578 ATGCTGGAAA
* * *
67044588 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAT-GC
* *
67044629 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATG-C
*
67044667 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGC
67044708 TTATATCCGG
1 TTATATCCGG
67044718 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGC
Found at i:67047531 original size:12 final size:12
Alignment explanation
Indices: 67047514--67047540 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
67047504 CACACGCCTG
67047514 TGTGCCAGGCCA
1 TGTGCCAGGCCA
67047526 TGTGCCAGGCCA
1 TGTGCCAGGCCA
67047538 TGT
1 TGT
67047541 AACTCACTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (12 bp):
TGTGCCAGGCCA
Found at i:67050598 original size:41 final size:41
Alignment explanation
Indices: 67050541--67050625 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
67050531 CCCATTCTGA
*
67050541 TATGGTTTTACAAATAATTTAATATAAGCTTGCTGAACAAG
1 TATGGTTTTACAAATAATTTAATATAAGCCTGCTGAACAAG
67050582 TATGGTTTTACAAATAATTTAATATAAGCCTGCTGAACAAG
1 TATGGTTTTACAAATAATTTAATATAAGCCTGCTGAACAAG
67050623 TAT
1 TAT
67050626 AAGGCTTAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (41 bp):
TATGGTTTTACAAATAATTTAATATAAGCCTGCTGAACAAG
Found at i:67051867 original size:28 final size:28
Alignment explanation
Indices: 67051819--67051921 Score: 152
Period size: 28 Copynumber: 3.7 Consensus size: 28
67051809 CTATGTACAA
* **
67051819 CACTTAGTGTGCGAGACATTGAGAATGG
1 CACTTAGTGTGCGAGATATTGAGTGTGG
* *
67051847 CACTTTGTGTGCAAGATATTGAGTGTGG
1 CACTTAGTGTGCGAGATATTGAGTGTGG
*
67051875 CACTTAGTGTGCGAGATATCGAGTGTGG
1 CACTTAGTGTGCGAGATATTGAGTGTGG
67051903 CACTTAGTGTGCGAGATAT
1 CACTTAGTGTGCGAGATAT
67051922 CAAGTATTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.24, C:0.14, G:0.32, T:0.30
Consensus pattern (28 bp):
CACTTAGTGTGCGAGATATTGAGTGTGG
Found at i:67056728 original size:47 final size:47
Alignment explanation
Indices: 67056616--67056746 Score: 145
Period size: 47 Copynumber: 2.8 Consensus size: 47
67056606 GTTCGAATGA
* * * * *
67056616 TACCTTCATTTGGATATGGGTCATGGTATAGGTATTTCAGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTA-CTCAGAGAGAAGT
* * * * * *
67056664 TACCTTGTTTTGACTATGGGCCATAGTATAGGTACTCTGGGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAGAGAGAAGT
*
67056711 TACCTTGATTTGGCTATGGGCCATGGTATAGTTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
67056747 TATCAATTGT
Statistics
Matches: 68, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
47 40 0.59
48 28 0.41
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.37
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAGAGAGAAGT
Found at i:67070124 original size:40 final size:40
Alignment explanation
Indices: 67070069--67070338 Score: 427
Period size: 40 Copynumber: 6.8 Consensus size: 40
67070059 GATGATAACG
* *
67070069 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
*
67070109 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
*
67070149 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
*
67070189 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
* *
67070229 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCC
*
67070269 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCC
*
67070309 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67070339 AGCTATATCC
Statistics
Matches: 223, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
39 2 0.01
40 221 0.99
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCC
Found at i:67072398 original size:40 final size:40
Alignment explanation
Indices: 67072353--67072482 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
67072343 CGGAATATAA
67072353 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
67072393 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
67072433 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
67072473 CCGGATATAA
1 CCGGATATAA
67072483 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:67072497 original size:40 final size:39
Alignment explanation
Indices: 67072369--67072519 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
67072359 ATAACCATGT
* * *
67072369 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
67072409 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
67072449 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
67072488 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
67072520 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:67072503 original size:80 final size:79
Alignment explanation
Indices: 67072353--67072519 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
67072343 CGGAATATAA
*
67072353 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
67072418 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
67072433 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
67072495 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
67072512 CCGGATAT
1 CCGGATAT
67072520 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:67081715 original size:40 final size:40
Alignment explanation
Indices: 67081394--67081703 Score: 489
Period size: 40 Copynumber: 7.8 Consensus size: 40
67081384 GATGATAACG
* *
67081394 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
67081434 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
67081474 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
67081514 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
67081554 GGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
67081594 AGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
67081634 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
67081674 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67081704 AGCTATATCC
Statistics
Matches: 258, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.01
40 256 0.99
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:67092886 original size:27 final size:27
Alignment explanation
Indices: 67092820--67092942 Score: 138
Period size: 27 Copynumber: 4.5 Consensus size: 27
67092810 ACACACCAGA
* * *
67092820 AAATGAAAGCCTTTAGGGCAACCTATG
1 AAATGGAAGCCTTTATGGCAATCTATG
** *
67092847 AAAATAAAAGCCTTTATGGAAATCTATG
1 -AAATGGAAGCCTTTATGGCAATCTATG
*
67092875 AAATGGAAGCCTTTGTGGCAATCTATG
1 AAATGGAAGCCTTTATGGCAATCTATG
* * *
67092902 AAATAGAAGCCTTTGTGGTAATCTATG
1 AAATGGAAGCCTTTATGGCAATCTATG
67092929 AAATGGAATGCCTT
1 AAATGGAA-GCCTT
67092943 CATGACGCAT
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
27 55 0.66
28 28 0.34
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (27 bp):
AAATGGAAGCCTTTATGGCAATCTATG
Found at i:67092930 original size:54 final size:55
Alignment explanation
Indices: 67092820--67092942 Score: 169
Period size: 54 Copynumber: 2.2 Consensus size: 55
67092810 ACACACCAGA
*
67092820 AAATGAAAGCCTTTAGGGCAACCTATGAAAATAAAAGCCTTTATGGAAATCTATG
1 AAATGGAAGCCTTTAGGGCAACCTATGAAAATAAAAGCCTTTATGGAAATCTATG
* * * *
67092875 AAATGGAAGCCTTT-GTGGCAATCTATG-AAATAGAAGCCTTTGTGGTAATCTATG
1 AAATGGAAGCCTTTAG-GGCAACCTATGAAAATAAAAGCCTTTATGGAAATCTATG
67092929 AAATGGAATGCCTT
1 AAATGGAA-GCCTT
67092943 CATGACGCAT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
54 33 0.54
55 28 0.46
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (55 bp):
AAATGGAAGCCTTTAGGGCAACCTATGAAAATAAAAGCCTTTATGGAAATCTATG
Found at i:67094659 original size:53 final size:53
Alignment explanation
Indices: 67094579--67095011 Score: 363
Period size: 53 Copynumber: 8.0 Consensus size: 53
67094569 GAAAGCGAAA
* * * * *
67094579 AATGGTAAGTATGACAAAACCTAGAAGAATTATATGTACGACTAACTATGAAG
1 AATGGTAAATATGACAAACCCTAGAAGAATGATATGTATGACTAACTTTGAAG
* * * *
67094632 AATGGTAAATATTACAAACCCTAGAAGAATGATATGTATGGCTAAATTTGAAA
1 AATGGTAAATATGACAAACCCTAGAAGAATGATATGTATGACTAACTTTGAAG
* **
67094685 AATGGTAAATACGGTAAACCCTAGAAGAATGATATGTAAGACATGTATGGCTAACTTTGAAG
1 AATGGTAAATATGACAAACCCTAGAAGAATGATATGT-----ATG-A---CTAACTTTGAAG
* *
67094747 AATGGTAAATACGGA-AAACCCGAGAAGAATGATATGTATAGA-TAACTTTGAAG
1 AATGGTAAATA-TGACAAACCCTAGAAGAATGATATGTAT-GACTAACTTTGAAG
* * * * *
67094800 AATGGTAAATATGGA-AAACCTTAAAAGAATGATATGTATGGCTAACTCTGAGG
1 AATGGTAAATAT-GACAAACCCTAGAAGAATGATATGTATGACTAACTTTGAAG
* * * * * * * *
67094853 AACGGTAAGTATGGCAAACCCTGGAAAAATAATATGTATGGCTAACTTTTAAG
1 AATGGTAAATATGACAAACCCTAGAAGAATGATATGTATGACTAACTTTGAAG
* * * * * *
67094906 AATAGTAAATAAGGCAAACCCTGGAAGAATGATATGTAT-ACCTAACTCTGAGG
1 AATGGTAAATATGACAAACCCTAGAAGAATGATATGTATGA-CTAACTTTGAAG
* * * * *
67094959 AATGGTAAGTATGGCAAACCCT-GAAGGAATGATATGTGTGACTAGCTCTGAAG
1 AATGGTAAATATGACAAACCCTAGAA-GAATGATATGTATGACTAACTTTGAAG
67095012 GATTGGTAGG
Statistics
Matches: 310, Mismatches: 53, Indels: 34
0.78 0.13 0.09
Matches are distributed among these distances:
52 5 0.02
53 254 0.82
54 1 0.00
57 3 0.01
58 4 0.01
62 42 0.14
63 1 0.00
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.25
Consensus pattern (53 bp):
AATGGTAAATATGACAAACCCTAGAAGAATGATATGTATGACTAACTTTGAAG
Found at i:67094744 original size:62 final size:62
Alignment explanation
Indices: 67094665--67094784 Score: 204
Period size: 62 Copynumber: 1.9 Consensus size: 62
67094655 GAAGAATGAT
* *
67094665 ATGTATGGCTAAATTTGAAAAATGGTAAATACGGTAAACCCTAGAAGAATGATATGTAAGAC
1 ATGTATGGCTAAATTTGAAAAATGGTAAATACGGAAAACCCGAGAAGAATGATATGTAAGAC
* *
67094727 ATGTATGGCTAACTTTGAAGAATGGTAAATACGGAAAACCCGAGAAGAATGATATGTA
1 ATGTATGGCTAAATTTGAAAAATGGTAAATACGGAAAACCCGAGAAGAATGATATGTA
67094785 TAGATAACTT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.25
Consensus pattern (62 bp):
ATGTATGGCTAAATTTGAAAAATGGTAAATACGGAAAACCCGAGAAGAATGATATGTAAGAC
Found at i:67094784 original size:115 final size:115
Alignment explanation
Indices: 67094620--67094837 Score: 312
Period size: 115 Copynumber: 1.9 Consensus size: 115
67094610 ATATGTACGA
** * * *
67094620 CTAACTATGAAGAATGGTAAATATTACAAACCCTAGAAGAATGATATGTATGGCTAAATTTGAAA
1 CTAACTATGAAGAATGGTAAATAGGACAAACCCGAGAAGAATGATATGTATAGATAAATTTGAAA
* *
67094685 AATGGTAAATACGGTAAACCCTAGAAGAATGATATGTAAGACATGTATGG
66 AATGGTAAATACGGAAAACCCTAAAAGAATGATATGTAAGACATGTATGG
* *
67094735 CTAACTTTGAAGAATGGTAAATACGGA-AAACCCGAGAAGAATGATATGTATAGATAACTTTGAA
1 CTAACTATGAAGAATGGTAAATA-GGACAAACCCGAGAAGAATGATATGTATAGATAAATTTGAA
* * *
67094799 GAATGGTAAATATGGAAAACCTTAAAAGAATGATATGTA
65 AAATGGTAAATACGGAAAACCCTAAAAGAATGATATGTA
67094838 TGGCTAACTC
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
115 89 0.99
116 1 0.01
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.26
Consensus pattern (115 bp):
CTAACTATGAAGAATGGTAAATAGGACAAACCCGAGAAGAATGATATGTATAGATAAATTTGAAA
AATGGTAAATACGGAAAACCCTAAAAGAATGATATGTAAGACATGTATGG
Found at i:67094829 original size:27 final size:27
Alignment explanation
Indices: 67094743--67094830 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
67094733 GGCTAACTTT
* **
67094743 GAAGAATGGTAAATACGGAAAACCCGA
1 GAAGAATGGTAAATATGGAAAACCTTA
* ** * * *
67094770 GAAGAATGATATGTATAGATAA-CTTT
1 GAAGAATGGTAAATATGGAAAACCTTA
67094796 GAAGAATGGTAAATATGGAAAACCTTA
1 GAAGAATGGTAAATATGGAAAACCTTA
*
67094823 AAAGAATG
1 GAAGAATG
67094831 ATATGTATGG
Statistics
Matches: 44, Mismatches: 16, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
26 18 0.41
27 26 0.59
ACGTcount: A:0.48, C:0.08, G:0.23, T:0.22
Consensus pattern (27 bp):
GAAGAATGGTAAATATGGAAAACCTTA
Found at i:67094839 original size:27 final size:26
Alignment explanation
Indices: 67094771--67094840 Score: 68
Period size: 27 Copynumber: 2.7 Consensus size: 26
67094761 AAAACCCGAG
* * **
67094771 AAGAATGATATGTATAGATAACTTTG
1 AAGAATGATATGTATGGAAAACTTAA
* **
67094797 AAGAATGGTAAATATGGAAAACCTTAA
1 AAGAATGATATGTATGGAAAA-CTTAA
67094824 AAGAATGATATGTATGG
1 AAGAATGATATGTATGG
67094841 CTAACTCTGA
Statistics
Matches: 33, Mismatches: 10, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
26 16 0.48
27 17 0.52
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (26 bp):
AAGAATGATATGTATGGAAAACTTAA
Found at i:67101295 original size:2 final size:2
Alignment explanation
Indices: 67101288--67101330 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
67101278 ATTTAAGTTA
67101288 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67101330 A
1 A
67101331 AAAAGAGAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:67105633 original size:46 final size:46
Alignment explanation
Indices: 67105571--67105716 Score: 159
Period size: 46 Copynumber: 3.1 Consensus size: 46
67105561 GCCACAATAT
* * *
67105571 ATATATACACATCTCATACATATCTCACATTAGCTATTTGGCTTTACC
1 ATATAT-C-CATCTCATACACATCTCACATTAGCCATTCGGCTTTACC
* * *
67105619 ATATATCCATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACC
1 ATATATCCATCTCATACACATCTCACATTAGCCATTCGGCTTTACC
* * * *
67105665 -TCATATCCATCTCATACACGTTTCGCATTAGTCATTCGGCTTTACC
1 AT-ATATCCATCTCATACACATCTCACATTAGCCATTCGGCTTTACC
*
67105711 ACATAT
1 ATATAT
67105717 ATATACTTTC
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
45 1 0.01
46 80 0.91
47 1 0.01
48 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (46 bp):
ATATATCCATCTCATACACATCTCACATTAGCCATTCGGCTTTACC
Found at i:67105896 original size:22 final size:22
Alignment explanation
Indices: 67105870--67105994 Score: 60
Period size: 22 Copynumber: 5.4 Consensus size: 22
67105860 CATGTTCACA
67105870 TTATCACATTGGCCATTCGGCC
1 TTATCACATTGGCCATTCGGCC
* * * *
67105892 TTATCGCATATATG-CATGTTC-ACA
1 TTATCACAT-T-GGCCA--TTCGGCC
67105916 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCATTCGGCC
* * * *
67105939 TTATCTCATATATG-CATGTTC-ACA
1 TTATCACAT-T-GGCCA--TTCGGCC
67105963 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCATTCGGCC
67105986 TTATCACAT
1 TTATCACAT
67105995 ATATGCATGT
Statistics
Matches: 73, Mismatches: 16, Indels: 28
0.62 0.14 0.24
Matches are distributed among these distances:
22 27 0.37
23 14 0.19
24 14 0.19
25 18 0.25
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.35
Consensus pattern (22 bp):
TTATCACATTGGCCATTCGGCC
Found at i:67106151 original size:47 final size:47
Alignment explanation
Indices: 67105697--67106139 Score: 676
Period size: 47 Copynumber: 9.5 Consensus size: 47
67105687 TCGCATTAGT
* * ** *
67105697 CATTCGGCTTTACCACATATATATACT-TTCACGTTCATCACATTGGC
1 CATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCACATTGGC
*
67105744 CATTCTGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
* * *
67105791 CATTCGACCTTATCGCATATATGCATGTTCACATTCATCACATTAGC
1 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
*
67105838 C-TTCGGCCTTATCGCATATATGCATGTTCACATT-ATCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
*
67105883 CATTCGGCCTTATCGCATATATGCATGTTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
*
67105930 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
67105977 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
* **
67106024 CATTCAGTTTTATCACATATATGCATGTTCACATTCATCACATTGGC
1 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
* * * *
67106071 CATTCGGCTTTATCTCATATATGCATGTTCACATTCATCACCTTTGC
1 CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
*
67106118 CATTCGGCCTTATCTCATATAT
1 CATTCGGCCTTATCACATATAT
67106140 ACACATTCAC
Statistics
Matches: 370, Mismatches: 23, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
45 11 0.03
46 66 0.18
47 293 0.79
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (47 bp):
CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGC
Found at i:67110118 original size:59 final size:59
Alignment explanation
Indices: 67110021--67110141 Score: 233
Period size: 59 Copynumber: 2.1 Consensus size: 59
67110011 CCTCCCTTAA
*
67110021 CCAAGCACTACTCATTGCTTGGGCTCTTCTTGATTGTGCACGCAAAGCCAAATTCCAAC
1 CCAAACACTACTCATTGCTTGGGCTCTTCTTGATTGTGCACGCAAAGCCAAATTCCAAC
67110080 CCAAACACTACTCATTGCTTGGGCTCTTCTTGATTGTGCACGCAAAGCCAAATTCCAAC
1 CCAAACACTACTCATTGCTTGGGCTCTTCTTGATTGTGCACGCAAAGCCAAATTCCAAC
67110139 CCA
1 CCA
67110142 TTTCAGCAAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (59 bp):
CCAAACACTACTCATTGCTTGGGCTCTTCTTGATTGTGCACGCAAAGCCAAATTCCAAC
Found at i:67119001 original size:22 final size:22
Alignment explanation
Indices: 67118976--67119047 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 22
67118966 AGGTTTAGAG
67118976 TTTTGAGTTTTTTTTTTATATT
1 TTTTGAGTTTTTTTTTTATATT
* **
67118998 TTTTAAGTTTTTTTAATATATT
1 TTTTGAGTTTTTTTTTTATATT
* *
67119020 ATCT-AG-TTTTTTTTTATAATT
1 TTTTGAGTTTTTTTTTTAT-ATT
67119041 TTTTGAG
1 TTTTGAG
67119048 ATGTAAAGTT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
20 9 0.23
21 7 0.18
22 23 0.59
ACGTcount: A:0.21, C:0.01, G:0.08, T:0.69
Consensus pattern (22 bp):
TTTTGAGTTTTTTTTTTATATT
Found at i:67132529 original size:30 final size:29
Alignment explanation
Indices: 67132493--67132569 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
67132483 TAGTTACGGA
*
67132493 TGACTGATTTATTATTTTTCTAAAGTTTAG
1 TGACTGATTTATTATTTTTC-AAAATTTAG
* * *
67132523 TGACTGAGTTATAACTTTTCAAAATTTAG
1 TGACTGATTTATTATTTTTCAAAATTTAG
*
67132552 TAACT-ATTTTATTATTTT
1 TGACTGA-TTTATTATTTT
67132570 AATTAAATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
28 1 0.03
29 20 0.53
30 17 0.45
ACGTcount: A:0.30, C:0.08, G:0.10, T:0.52
Consensus pattern (29 bp):
TGACTGATTTATTATTTTTCAAAATTTAG
Found at i:67133942 original size:15 final size:15
Alignment explanation
Indices: 67133922--67133973 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
67133912 ACTACAAAAC
67133922 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
67133937 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
67133956 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
67133971 ATT
1 ATT
67133974 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:67134051 original size:18 final size:18
Alignment explanation
Indices: 67134013--67134048 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
67134003 TAATATTATT
*
67134013 TAAAATTAATTATTAAAA
1 TAAAATTAAATATTAAAA
67134031 TAAAATTAAAATATTAAA
1 TAAAATT-AAATATTAAA
67134049 TAATTTATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
TAAAATTAAATATTAAAA
Found at i:67135311 original size:21 final size:21
Alignment explanation
Indices: 67135262--67135320 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
67135252 ATAATAAATT
*
67135262 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
67135282 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
67135304 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
67135321 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:67138783 original size:20 final size:20
Alignment explanation
Indices: 67138754--67138821 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
67138744 TTGCACCTCG
* * *
67138754 GTGCCTCTGATAGTACATTC
1 GTGCCCCTGATAGCACATTA
*
67138774 GTGCCCCTGA-ATGCACTTTA
1 GTGCCCCTGATA-GCACATTA
*
67138794 GTGCCCCTGATAGCACATTT
1 GTGCCCCTGATAGCACATTA
67138814 GTGCCCCT
1 GTGCCCCT
67138822 AACTGCGCTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
19 1 0.03
20 38 0.95
21 1 0.03
ACGTcount: A:0.18, C:0.31, G:0.21, T:0.31
Consensus pattern (20 bp):
GTGCCCCTGATAGCACATTA
Found at i:67139692 original size:21 final size:21
Alignment explanation
Indices: 67139678--67139735 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
67139668 CCTACAACAT
67139678 GGCCATGTGTCCCTATGACAC
1 GGCCATGTGTCCCTATGACAC
*
67139699 GGCCATTTGTCCCTATGACAC
1 GGCCATGTGTCCCTATGACAC
*
67139720 GGCCATGTGCCCCTAT
1 GGCCATGTGTCCCTAT
67139736 TTTTTCCAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.17, C:0.34, G:0.22, T:0.26
Consensus pattern (21 bp):
GGCCATGTGTCCCTATGACAC
Found at i:67140860 original size:12 final size:12
Alignment explanation
Indices: 67140843--67140875 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
67140833 CGGCCTGCCC
67140843 ATATTAATTTTT
1 ATATTAATTTTT
67140855 ATATT-ATTTTT
1 ATATTAATTTTT
67140866 ATA-TAATTTT
1 ATATTAATTTT
67140876 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:67149691 original size:5 final size:5
Alignment explanation
Indices: 67149681--67149716 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
67149671 CTTGTACGGT
67149681 TAAAA TAAAA TAAAA TAAAA TAAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA T-AAAA TAAAA TAAAA
67149717 AACAATCGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:67149708 original size:11 final size:11
Alignment explanation
Indices: 67149682--67149717 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
67149672 TTGTACGGTT
67149682 AAAATAAAAT-
1 AAAATAAAATA
67149692 AAAATAAAATA
1 AAAATAAAATA
67149703 AAAATAAAATA
1 AAAATAAAATA
67149714 AAAA
1 AAAA
67149718 ACAATCGTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.40
11 15 0.60
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:67152985 original size:39 final size:39
Alignment explanation
Indices: 67152931--67153010 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
67152921 GGGATTGATC
67152931 TTCTAATTTGCTGTTTCATTTTTGAATACTAGAATTTGG
1 TTCTAATTTGCTGTTTCATTTTTGAATACTAGAATTTGG
67152970 TTCTAATTTGCTGTTTCATTTTTGAATACTAGAATTTGG
1 TTCTAATTTGCTGTTTCATTTTTGAATACTAGAATTTGG
67153009 TT
1 TT
67153011 GTTTTTCTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.23, C:0.10, G:0.15, T:0.53
Consensus pattern (39 bp):
TTCTAATTTGCTGTTTCATTTTTGAATACTAGAATTTGG
Found at i:67164010 original size:18 final size:18
Alignment explanation
Indices: 67163969--67164011 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
67163959 TTCTTAATAA
* *
67163969 ATATGTAGTTTGTTTAGT
1 ATATGTTGTTTATTTAGT
* *
67163987 AAATGTTGTTTATTTATT
1 ATATGTTGTTTATTTAGT
67164005 ATATGTT
1 ATATGTT
67164012 TGAATTAACA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (18 bp):
ATATGTTGTTTATTTAGT
Found at i:67165217 original size:24 final size:24
Alignment explanation
Indices: 67165168--67165227 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
67165158 AGGAAGGCGA
*
67165168 TGGAGATGAAGATAAAGCCAAGGG
1 TGGAGATGAAGATAAAGACAAGGG
* *
67165192 TGGAGATGAAGAT-GAGTACAATGG
1 TGGAGATGAAGATAAAG-ACAAGGG
*
67165216 TGGAGGTGAAGA
1 TGGAGATGAAGA
67165228 CGAAGACGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 2 0.06
24 29 0.94
ACGTcount: A:0.38, C:0.05, G:0.40, T:0.17
Consensus pattern (24 bp):
TGGAGATGAAGATAAAGACAAGGG
Found at i:67173705 original size:20 final size:19
Alignment explanation
Indices: 67173678--67173719 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
67173668 CCCTTCAAAT
67173678 TTTCTTACTTT-CATTTGCA
1 TTTCTTACTTTCCA-TTGCA
67173697 TTTCATTACTTTCCATTGCA
1 TTTC-TTACTTTCCATTGCA
67173717 TTT
1 TTT
67173720 ACTATCTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 15 0.71
21 2 0.10
ACGTcount: A:0.17, C:0.21, G:0.05, T:0.57
Consensus pattern (19 bp):
TTTCTTACTTTCCATTGCA
Found at i:67174398 original size:25 final size:25
Alignment explanation
Indices: 67174364--67174558 Score: 216
Period size: 25 Copynumber: 7.8 Consensus size: 25
67174354 TCCTATACAT
67174364 GTATGCTCACACGAGTTGTGAATCG
1 GTATGCTCACACGAGTTGTGAATCG
* *
67174389 GTATGCTCACATGA-TCTGTGAATCA
1 GTATGCTCACACGAGT-TGTGAATCG
* * * *
67174414 GTATGCTCACACGAGCTATAAATCA
1 GTATGCTCACACGAGTTGTGAATCG
67174439 GTATGCTCACACGA-TCTGTGAATCG
1 GTATGCTCACACGAGT-TGTGAATCG
*
67174464 ATATGCTCACACGA-TCTGTGAATCG
1 GTATGCTCACACGAGT-TGTGAATCG
*
67174489 GTATGCTCACACGATTTGTGAATCG
1 GTATGCTCACACGAGTTGTGAATCG
* * * * *
67174514 GTATGCTCACACAAGCTATAAATCA
1 GTATGCTCACACGAGTTGTGAATCG
*
67174539 GTATGCTCACACGAGCTGTG
1 GTATGCTCACACGAGTTGTG
67174559 GGTCGAAACG
Statistics
Matches: 145, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
24 1 0.01
25 143 0.99
26 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (25 bp):
GTATGCTCACACGAGTTGTGAATCG
Found at i:67174443 original size:50 final size:49
Alignment explanation
Indices: 67174364--67174558 Score: 255
Period size: 50 Copynumber: 3.9 Consensus size: 49
67174354 TCCTATACAT
* * * * *
67174364 GTATGCTCACACGAGTTGTGAATCGGTATGCTCACATGATCTGTGAATC
1 GTATGCTCACACGAGCTATAAATCAGTATGCTCACACGATCTGTGAATC
67174413 AGTATGCTCACACGAGCTATAAATCAGTATGCTCACACGATCTGTGAATC
1 -GTATGCTCACACGAGCTATAAATCAGTATGCTCACACGATCTGTGAATC
* * * * *
67174463 GATATGCTCACACGATCTGTGAATCGGTATGCTCACACGATTTGTGAATC
1 G-TATGCTCACACGAGCTATAAATCAGTATGCTCACACGATCTGTGAATC
* *
67174513 GGTATGCTCACACAAGCTATAAATCAGTATGCTCACACGAGCTGTG
1 -GTATGCTCACACGAGCTATAAATCAGTATGCTCACACGATCTGTG
67174559 GGTCGAAACG
Statistics
Matches: 126, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
49 1 0.01
50 124 0.98
51 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (49 bp):
GTATGCTCACACGAGCTATAAATCAGTATGCTCACACGATCTGTGAATC
Found at i:67174487 original size:75 final size:75
Alignment explanation
Indices: 67174364--67174558 Score: 241
Period size: 75 Copynumber: 2.6 Consensus size: 75
67174354 TCCTATACAT
* *
67174364 GTATGCTCACACGAGT-TGTGAATCGGTATGCTCACATGATCTGTGAATCAGTATGCTCACACGA
1 GTATGCTCACACGA-TCTGTGAATCGATATGCTCACACGATCTGTGAATCAGTATGCTCACACGA
67174428 GCTATAAATCA
65 GCTATAAATCA
* *
67174439 GTATGCTCACACGATCTGTGAATCGATATGCTCACACGATCTGTGAATCGGTATGCTCACACGAT
1 GTATGCTCACACGATCTGTGAATCGATATGCTCACACGATCTGTGAATCAGTATGCTCACACGAG
* * * *
67174504 TTGTGAATCG
66 CTATAAATCA
* * * * *
67174514 GTATGCTCACACAAGCTATAAATC-AGTATGCTCACACGAGCTGTG
1 GTATGCTCACACGATCTGTGAATCGA-TATGCTCACACGATCTGTG
67174559 GGTCGAAACG
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
74 2 0.02
75 103 0.98
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (75 bp):
GTATGCTCACACGATCTGTGAATCGATATGCTCACACGATCTGTGAATCAGTATGCTCACACGAG
CTATAAATCA
Found at i:67176651 original size:17 final size:17
Alignment explanation
Indices: 67176629--67176664 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
67176619 AATAATCCCT
67176629 AAACTATTAAATATAAG
1 AAACTATTAAATATAAG
67176646 AAACTATTAAATATAAG
1 AAACTATTAAATATAAG
67176663 AA
1 AA
67176665 TTGGGATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.28
Consensus pattern (17 bp):
AAACTATTAAATATAAG
Found at i:67177731 original size:22 final size:24
Alignment explanation
Indices: 67177706--67177749 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
67177696 CTATCTAGTT
67177706 ATCAAATC-TCT-AAGATTACAAA
1 ATCAAATCTTCTAAAGATTACAAA
*
67177728 ATCATATCTTCTAAAGATTACA
1 ATCAAATCTTCTAAAGATTACA
67177750 TTTAATGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 3 0.16
24 9 0.47
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (24 bp):
ATCAAATCTTCTAAAGATTACAAA
Found at i:67184389 original size:16 final size:17
Alignment explanation
Indices: 67184368--67184399 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
67184358 AATTTTATCA
67184368 TTATAAATT-TAAAATT
1 TTATAAATTATAAAATT
67184384 TTATAAATTATAAAAT
1 TTATAAATTATAAAAT
67184400 GACGTAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTATAAATTATAAAATT
Found at i:67186785 original size:13 final size:13
Alignment explanation
Indices: 67186762--67186795 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
67186752 TTTTGTACCC
*
67186762 AAAAAAAAAAAGAG
1 AAAAAGAAAAA-AG
67186776 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
67186789 AAAAAGA
1 AAAAAGA
67186796 GATATTCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:67194677 original size:27 final size:26
Alignment explanation
Indices: 67194637--67194748 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
67194627 AGCATGGCTG
* *
67194637 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
67194663 CCAGATACATATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
67194691 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
67194718 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
67194745 CCAG
1 CCAG
67194749 GACACTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:67194731 original size:54 final size:54
Alignment explanation
Indices: 67194637--67194748 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
67194627 AGCATGGCTG
* *
67194637 CCAGAACAGATAATGTGACAGAGTCACCAGATACATATAATCGTGGCAGAACCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
* * * *
67194691 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
67194745 CCAG
1 CCAG
67194749 GACACTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
Found at i:67196194 original size:24 final size:24
Alignment explanation
Indices: 67196167--67196213 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
67196157 CTAGATTTCC
**
67196167 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
67196191 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
67196214 GTCCTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:67196990 original size:22 final size:22
Alignment explanation
Indices: 67196962--67197014 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
67196952 GAAATAGAGG
* *
67196962 ATATCAGATACAATTGCAAAAC
1 ATATCAGATACAAATACAAAAC
*
67196984 ATATCAGATACAAATACGAAAC
1 ATATCAGATACAAATACAAAAC
*
67197006 AGATCAGAT
1 ATATCAGAT
67197015 GTAGATGCAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.51, C:0.17, G:0.11, T:0.21
Consensus pattern (22 bp):
ATATCAGATACAAATACAAAAC
Found at i:67198545 original size:541 final size:541
Alignment explanation
Indices: 67197516--67199647 Score: 3646
Period size: 541 Copynumber: 3.9 Consensus size: 541
67197506 CCACGTTCTA
*
67197516 GATATGC-AAAAAATTTGGATGCATGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
1 GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
* * * *
67197580 AAAGGGTGGATTATTCTACAATTCAAAAGATAATACGATTAAAGTTTTTGCTCATGCTGCTTTTC
66 AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACCCATGCTACTTTTC
*
67197645 TTCAAGAAAACTATATGAATAACTTTAAACCTCGA-AGTAAAATGGTACTCGAGGAACTTTCAGG
131 TTCAAGAAAACTATATGAATAACTTTAAACCTC-ACAGTAAAACGGTACTCGAGGAACTTTCAGG
* * *
67197709 AGTTGTAGAATAATCACCAGGTTCAATTCTCGAGAAAGTTGTGGAAAGACCTACAAACAATCAAC
195 AGTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAAACCTACAAACGATCAAC
* * * *
67197774 AATATAGGACAATTTGTTATAGTAGGAGAGTTTCTAAGAAATTAGACTTCTTCATCTATGATAGT
260 AATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAAACTTCTTCATCTATGATAGT
** * *
67197839 AGTATTTATATTATGGAAGACAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTATGCA
325 AGTATTTATATTACAGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAAGCTATGCA
* *
67197904 AGACATTGATTCCAAGCTCTGGAAACAGATCATGAATGCCGAAATGGATTCTATGAAATCCAATA
390 AGACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATA
67197969 TAGTATGGGAACTTGTATACTTACCAGTTGGGATTAAACCTATAGGGTGTAAGTGGATATGCAAA
455 TAGTATGGGAACTTGTATACTTACCAGTTGGGATTAAACCTATAGGGTGTAAGTGGATATGCAAA
*
67198034 AAATCCACTCACTTATAAGGAG
520 AAATCCACTCACTTACAAGGAG
67198056 GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
1 GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
*
67198121 AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACCCATGCTGCTTTTC
66 AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACCCATGCTACTTTTC
*
67198186 TTCAAGAAAACTATATGAATAACTTTAAACCTCACAGTAAAACGGTACTCGAGGAATTTTCAGGA
131 TTCAAGAAAACTATATGAATAACTTTAAACCTCACAGTAAAACGGTACTCGAGGAACTTTCAGGA
67198251 GTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAAACCTACAAACGATCAACA
196 GTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAAACCTACAAACGATCAACA
*
67198316 ATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAAACCTCTTCATCTATGATAGTA
261 ATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAAACTTCTTCATCTATGATAGTA
*
67198381 GTATTTATATTAAAGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAAGCTATGCAA
326 GTATTTATATTACAGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAAGCTATGCAA
67198446 GACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATAT
391 GACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATAT
*
67198511 AGTATGGGAACTTGTATACTTACCAGTTGGGATTAAACCTATAGGGTGTAAGTGGATATACAAAA
456 AGTATGGGAACTTGTATACTTACCAGTTGGGATTAAACCTATAGGGTGTAAGTGGATATGCAAAA
67198576 AATCCACTCACTTACAAGGAG
521 AATCCACTCACTTACAAGGAG
67198597 GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
1 GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
67198662 AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACCCATGCTACTTTTC
66 AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACCCATGCTACTTTTC
*
67198727 TTCAAGAAAATTATATGAATAACTTTAAACCTCACAGTAAAACGGTACTCGAGGAACTTTCAGGA
131 TTCAAGAAAACTATATGAATAACTTTAAACCTCACAGTAAAACGGTACTCGAGGAACTTTCAGGA
*
67198792 GTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAAACCTGCAAACGATCAACA
196 GTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAAACCTACAAACGATCAACA
67198857 ATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAAACTTCTTCATCTATGATAGTA
261 ATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAAACTTCTTCATCTATGATAGTA
*
67198922 GTATTTATATTACAGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAAGCTATGCAG
326 GTATTTATATTACAGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAAGCTATGCAA
* * *
67198987 GACGTTGATTCCAAGCTCTAGAAACAGACCATGGATGTCGAAATGGATTCTATGAAATCCAATAT
391 GACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATAT
* * *
67199052 GGTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATA-GGTGTAAGTGGATATGCAAAA
456 AGTATGGGAACTTGTATACTTACCAGTTGGGATTAAACCTATAGGGTGTAAGTGGATATGCAAAA
67199116 AATCCACTCACTTACAAGGAG
521 AATCCACTCACTTACAAGGAG
* *
67199137 GATATGTAAAAAAA-TTGGATGCACGAATGAAATTATGCACGGTTGTATGATATCCAAAAGGAAC
1 GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
*
67199201 AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAGAA-TTTTTACTCATGCTACTTTT
66 AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTA-AAGTTTTTACCCATGCTACTTTT
* * *
67199265 CTTCAAGAAAACTATATGAATAACTTTAAACCTCAAAGTAAAATGGTACTCAAGGAACTTTCAGG
130 CTTCAAGAAAACTATATGAATAACTTTAAACCTCACAGTAAAACGGTACTCGAGGAACTTTCAGG
* * * * * *
67199330 AGTTGTAGAATAATCACCAACTTCAATTCTCGAGAAAGTTATGGAAAGACATACAAATGATCAAT
195 AGTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAAACCTACAAACGATCAAC
* * * *
67199395 AATATAGGGCAATTCATTATAGTAGGAAAGTTTCTAAGAAACTAGACTTATTCATCTATGATAGT
260 AATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAAACTTCTTCATCTATGATAGT
* *
67199460 AGTATTTATATTACGGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTATAG-
325 AGTATTTATATTACAGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAAGCTAT-GC
* ** * * *
67199524 AGGATGTTGATTCCAAGCTCTGGAAACAGACAATGGATGCTGAAATGGATTTTATGAAATCCAAT
389 AAGACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAAT
** *
67199589 ACGGTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACCTATAGGGTGTAAGTGGAT
454 ATAGTATGGGAACTTGTATACTTACCAGTTGGGATTAAACCTATAGGGTGTAAGTGGAT
67199648 CTACAAGAAA
Statistics
Matches: 1523, Mismatches: 64, Indels: 10
0.95 0.04 0.01
Matches are distributed among these distances:
539 451 0.30
540 78 0.05
541 994 0.65
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.28
Consensus pattern (541 bp):
GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACCCATGCTACTTTTC
TTCAAGAAAACTATATGAATAACTTTAAACCTCACAGTAAAACGGTACTCGAGGAACTTTCAGGA
GTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAAACCTACAAACGATCAACA
ATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAAACTTCTTCATCTATGATAGTA
GTATTTATATTACAGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAAGCTATGCAA
GACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATAT
AGTATGGGAACTTGTATACTTACCAGTTGGGATTAAACCTATAGGGTGTAAGTGGATATGCAAAA
AATCCACTCACTTACAAGGAG
Found at i:67205639 original size:46 final size:46
Alignment explanation
Indices: 67205572--67205667 Score: 165
Period size: 46 Copynumber: 2.1 Consensus size: 46
67205562 ATTCAAGTGA
* *
67205572 ATATGTATATTTTTATAAGCCTTCATATTGGCTAGTCAAATGATAT
1 ATATGTATACTTTTATAAGCCTTCATATTGGCTAGTCAAATGATAC
*
67205618 ATATGTTTACTTTTATAAGCCTTCATATTGGCTAGTCAAATGATAC
1 ATATGTATACTTTTATAAGCCTTCATATTGGCTAGTCAAATGATAC
67205664 ATAT
1 ATAT
67205668 AATAAAATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.43
Consensus pattern (46 bp):
ATATGTATACTTTTATAAGCCTTCATATTGGCTAGTCAAATGATAC
Found at i:67219787 original size:42 final size:44
Alignment explanation
Indices: 67219739--67219892 Score: 167
Period size: 42 Copynumber: 3.6 Consensus size: 44
67219729 CGTTTTTGAG
* *
67219739 ATGTGATTACATGTAAGACCATG-CTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTAT
* *
67219782 -TGTGATTACATGTAAGACCATGTTTGGGACAATGACATCGTTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACAATGGCATCG-TAT
* * * *
67219826 ATGT--TT-CGTGTAAGACCCTGTCAGGGACAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTAT
* *
67219866 ATGTGATAACATGTAAGACCATATCTG
1 ATGTGATTACATGTAAGACCATGTCTG
67219893 AGATATGGCA
Statistics
Matches: 90, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
40 6 0.07
42 49 0.54
43 29 0.32
44 3 0.03
45 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTAT
Found at i:67221773 original size:22 final size:20
Alignment explanation
Indices: 67221731--67221777 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
67221721 ATTCCAAAAA
*
67221731 TAATATTATTTTAATATATT
1 TAATATTAATTTAATATATT
*
67221751 TAATATTTAATTTAATTTAATT
1 TAATA-TTAATTTAATAT-ATT
67221773 TAATA
1 TAATA
67221778 CTTATCTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 5 0.22
21 10 0.43
22 8 0.35
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TAATATTAATTTAATATATT
Found at i:67223226 original size:23 final size:23
Alignment explanation
Indices: 67223185--67223252 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
67223175 TGTAGTATAC
* *
67223185 TATGCATCGAAATGCCAAAATGA
1 TATGCATCGAAGTACCAAAATGA
67223208 TATGCA-CTGAAGTGA-CAAAATGA
1 TATGCATC-GAAGT-ACCAAAATGA
67223231 TATGCATCGAAGTACCAAAATG
1 TATGCATCGAAGTACCAAAATG
67223253 TTCCCACCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
22 2 0.05
23 36 0.92
24 1 0.03
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (23 bp):
TATGCATCGAAGTACCAAAATGA
Found at i:67224749 original size:3 final size:3
Alignment explanation
Indices: 67224743--67224807 Score: 80
Period size: 3 Copynumber: 22.0 Consensus size: 3
67224733 ATCTAAGATT
* **
67224743 TTA TTA TTA TTA TTTA TTA TTA GTA TGG TT- TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
67224787 TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
67224808 AGTTAAAGAT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
2 4 0.07
3 47 0.87
4 3 0.06
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:67232273 original size:3 final size:3
Alignment explanation
Indices: 67232267--67232337 Score: 92
Period size: 3 Copynumber: 24.0 Consensus size: 3
67232257 ATATAAGATT
* **
67232267 TTA TTA TTA TTA TTAA TTA TTA GTA TGG TT- TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
67232311 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
67232338 AGTTAAAGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
2 4 0.07
3 53 0.88
4 3 0.05
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:67232697 original size:22 final size:21
Alignment explanation
Indices: 67232665--67232705 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
67232655 TTAATTAAGT
67232665 AAATAAAAGAATA-AAAGAATG
1 AAATAAAAGAA-ACAAAGAATG
67232686 AAATAAAAAGAAACAAAGAA
1 AAAT-AAAAGAAACAAAGAA
67232706 AAGAAAGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (21 bp):
AAATAAAAGAAACAAAGAATG
Found at i:67235303 original size:68 final size:68
Alignment explanation
Indices: 67235194--67235470 Score: 358
Period size: 68 Copynumber: 4.1 Consensus size: 68
67235184 CTTGGAATTG
* * * * * * * *
67235194 GAAGTCCGCCAAGATAGTAAACAAGAGTTCATATTGTGTAAGACCATATCTAGGCTATGTCAACA
1 GAAGTCCGCCAGGACAATAAACATGGGTTCATATTGTGTAAGACCATAACTGGGCTATGGCAACA
67235259 AAT
66 AAT
* * * *
67235262 GAAGTCCGCTAGGACATTAAACATGGGTTCATATTGTGTAAGACCATACCTGCGCTATGGCAACA
1 GAAGTCCGCCAGGACAATAAACATGGGTTCATATTGTGTAAGACCATAACTGGGCTATGGCAACA
67235327 AAT
66 AAT
* ** * *
67235330 AAAGTGGGCCAGGACAGTAAACATGGGTTCATATTGTGTAAGACCATAACTGGGCTATGACCAA-
1 GAAGTCCGCCAGGACAATAAACATGGGTTCATATTGTGTAAGACCATAACTGGGCTATG-GCAAC
67235394 AAAT
65 AAAT
* * *
67235398 GAAGTCCACCAGGACAATAAATATGGGTTTATATTGTGTAAGACCATAACTGGGCTATGGCAACA
1 GAAGTCCGCCAGGACAATAAACATGGGTTCATATTGTGTAAGACCATAACTGGGCTATGGCAACA
67235463 AAT
66 AAT
67235466 GAAGT
1 GAAGT
67235471 GCTGGAATGC
Statistics
Matches: 181, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
67 3 0.02
68 175 0.97
69 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.24
Consensus pattern (68 bp):
GAAGTCCGCCAGGACAATAAACATGGGTTCATATTGTGTAAGACCATAACTGGGCTATGGCAACA
AAT
Found at i:67239179 original size:16 final size:17
Alignment explanation
Indices: 67239150--67239181 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
67239140 CAATTTAGTC
67239150 CAAAATTCATACTTTTA
1 CAAAATTCATACTTTTA
67239167 CAAAATT-ATACTTTT
1 CAAAATTCATACTTTT
67239182 GCCCCTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.44
Consensus pattern (17 bp):
CAAAATTCATACTTTTA
Found at i:67242040 original size:26 final size:26
Alignment explanation
Indices: 67242011--67242061 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
67242001 AATAAAATAA
67242011 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
* *
67242037 AACATTGAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
67242062 ACATTAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAG
Found at i:67245995 original size:26 final size:26
Alignment explanation
Indices: 67245966--67246017 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
67245956 AATAAAAGAA
67245966 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
67245992 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
67246018 CATTAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.12, G:0.04, T:0.42
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAG
Found at i:67247917 original size:13 final size:13
Alignment explanation
Indices: 67247899--67247924 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67247889 ACATCCGAGG
67247899 TAAGTCCTCAAGA
1 TAAGTCCTCAAGA
67247912 TAAGTCCTCAAGA
1 TAAGTCCTCAAGA
67247925 AGTGACCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (13 bp):
TAAGTCCTCAAGA
Found at i:67248293 original size:40 final size:40
Alignment explanation
Indices: 67248165--67248295 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
67248155 TATGCTGGAA
* * *
67248165 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
67248205 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
67248245 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
67248285 ATTATATCCGG
1 ATTATATCCGG
67248296 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:67256307 original size:40 final size:40
Alignment explanation
Indices: 67256181--67256308 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
67256171 TATGCTGGAA
* * *
67256181 ATTATATCCGGGTTAAGA-CCGAA-GCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
67256219 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
67256259 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
67256299 ATTATATCCG
1 ATTATATCCG
67256309 TTATATTCCG
Statistics
Matches: 72, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 14 0.19
39 7 0.10
40 50 0.69
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:67257126 original size:40 final size:40
Alignment explanation
Indices: 67257081--67257210 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
67257071 CGGAATACAA
67257081 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
67257121 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
67257161 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
67257201 CCGGATATAA
1 CCGGATATAA
67257211 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:67265166 original size:40 final size:41
Alignment explanation
Indices: 67265075--67265184 Score: 138
Period size: 40 Copynumber: 2.7 Consensus size: 41
67265065 ATAACCACGT
* *
67265075 GCACGAATGCCTTCAGGTCTTAGCCCGGA-TAGAACGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
*
67265115 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-CCG-CTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTA
*
67265155 GCAC-AATTGCCTTCGGGTCTTAACCCGGAT
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT
67265185 ATAATTTCCA
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
39 2 0.03
40 56 0.89
41 2 0.03
42 3 0.05
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (41 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
Found at i:67271840 original size:3 final size:3
Alignment explanation
Indices: 67271832--67271876 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
67271822 TTTGTAAATT
67271832 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
67271877 TAAATTATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:67273373 original size:54 final size:54
Alignment explanation
Indices: 67273314--67273420 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 54
67273304 TTTAGTTTAC
* *
67273314 TAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTGAAA-TACCCTCGATTTG
1 TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATACT-AAAGTACCCCCGATTTG
* * *
67273368 TAAAATTACTGAAATACCTTCGACTTGTAAAATTACTAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTT
67273421 ACAGAATTAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 8 0.17
54 38 0.83
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTTG
Found at i:67273390 original size:27 final size:27
Alignment explanation
Indices: 67273314--67273412 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
67273304 TTTAGTTTAC
* *
67273314 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
67273341 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
67273368 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
67273395 TAAAATTACT-AAAGTACC
1 TAAAATTACTGAAA-TACC
67273413 CCCGATTTAC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 56 0.89
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.31
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:67273428 original size:27 final size:27
Alignment explanation
Indices: 67273398--67273457 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
67273388 CGACTTGTAA
67273398 AATTACTAAAGTACCCCCGATTTACAG
1 AATTACTAAAGTACCCCCGATTTACAG
**** *
67273425 AATTACTGTTTTACCCCCGATTTACAT
1 AATTACTAAAGTACCCCCGATTTACAG
67273452 AATTAC
1 AATTAC
67273458 CGTTTTACCC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.33
Consensus pattern (27 bp):
AATTACTAAAGTACCCCCGATTTACAG
Found at i:67273462 original size:27 final size:27
Alignment explanation
Indices: 67273409--67273619 Score: 244
Period size: 27 Copynumber: 7.8 Consensus size: 27
67273399 ATTACTAAAG
* *
67273409 TACCCCCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
67273436 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
67273463 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* * * *
67273490 TACCCTTGACTTATAGAATTACCGCTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
67273517 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
67273544 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
67273571 TACCCTTAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
67273598 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
67273620 TAAAATACCC
Statistics
Matches: 161, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 160 0.99
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:67273628 original size:27 final size:27
Alignment explanation
Indices: 67273544--67273823 Score: 143
Period size: 27 Copynumber: 10.3 Consensus size: 27
67273534 ATTACCGTTT
* * ***
67273544 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTATAAAATTACTAAAA
* * * ****
67273571 TACCCTTAATTTACAGAATTACTGTTT
1 TACCCTTGATTTATAAAATTACTAAAA
* *
67273598 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* *
67273625 TACCCTT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTATAAAATTACTAAAA
* * * **
67273652 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGATTTATAAAATTACTAAAA
** * *
67273679 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * *
67273706 TAACCC-TGGTTTATAAAGTTACAAAAA
1 T-ACCCTTGATTTATAAAATTACTAAAA
*
67273733 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAT-AAAATTACTA-AAA
* * * *
67273762 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * * * *
67273789 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
*
67273816 CACCCTTG
1 TACCCTTG
67273824 TAGGATGAAA
Statistics
Matches: 199, Mismatches: 46, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
26 5 0.03
27 165 0.83
28 13 0.07
29 16 0.08
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACTAAAA
Found at i:67273645 original size:81 final size:82
Alignment explanation
Indices: 67273355--67273646 Score: 234
Period size: 81 Copynumber: 3.6 Consensus size: 82
67273345 AATACTGAAA
** * * *** **
67273355 TACCCTCGATTTGTAAAATTACTGAAATA-CCTTCGACTTGTAAAATTACTAAAGTACCCCCGAT
1 TACCCTCGATTTACAAAATTACCGAAATACCCTTCGATTTGTAAAATTACTATTTTACCCTTGAT
67273419 TTACAGAATTACTGTTT
66 TTACAGAATTACTGTTT
* * *** * ** * *
67273436 TACCCCCGATTTACATAATTACCGTTTTACCCCT-GATTTACATAATTA-TCGTTTTACCCTTGA
1 TACCCTCGATTTACAAAATTACCGAAATACCCTTCGATTTGTAAAATTACT-ATTTTACCCTTGA
* * * *
67273499 CTTATAGAATTACCGCTT
65 TTTACAGAATTACTGTTT
* * *** * * *
67273517 TACCCTCGATTTATAGAATTACCGTTTTACCC-TCGATTTATAGAATTACTATTTTACCCTTAAT
1 TACCCTCGATTTACAAAATTACCGAAATACCCTTCGATTTGTAAAATTACTATTTTACCCTTGAT
67273581 TTACAGAATTACTGTTT
66 TTACAGAATTACTGTTT
** *
67273598 TACCCTCGATTTACAAAATTACTAAAATACCCTTAG-TTTGTAAAATTAC
1 TACCCTCGATTTACAAAATTACCGAAATACCCTTCGATTTGTAAAATTAC
67273647 CAAAATACCC
Statistics
Matches: 162, Mismatches: 44, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
80 2 0.01
81 154 0.95
82 6 0.04
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (82 bp):
TACCCTCGATTTACAAAATTACCGAAATACCCTTCGATTTGTAAAATTACTATTTTACCCTTGAT
TTACAGAATTACTGTTT
Found at i:67273656 original size:54 final size:54
Alignment explanation
Indices: 67273598--67273823 Score: 213
Period size: 54 Copynumber: 4.1 Consensus size: 54
67273588 ATTACTGTTT
* *
67273598 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
*** ** * *
67273652 TACCCTTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * * * *
67273706 TAACCC-TGGTTTATAAAGTTACAAAAATACCCTTGACTTTCTAAAAATTA-TAGAAA
1 T-ACCCTTGGTTTACAAAATTACTAAAATACCCTT-AGTTTGT-AAAATTACCA-AAA
* * * * *
67273762 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
*
67273816 CACCCTTG
1 TACCCTTG
67273824 TAGGATGAAA
Statistics
Matches: 135, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
54 82 0.61
55 18 0.13
56 35 0.26
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.32
Consensus pattern (54 bp):
TACCCTTGGTTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:67273918 original size:27 final size:27
Alignment explanation
Indices: 67273841--67273918 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
67273831 AAATGACTAA
* *
67273841 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
67273868 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
67273895 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
67273919 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:67275208 original size:11 final size:11
Alignment explanation
Indices: 67275172--67275227 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
67275162 CATGGTATGT
67275172 ATGATATGCAC
1 ATGATATGCAC
* *
67275183 ATGACATG--T
1 ATGATATGCAC
67275192 ATGATATGCAC
1 ATGATATGCAC
*
67275203 ATGATATG--T
1 ATGATATGCAC
67275212 ATGATATGCAC
1 ATGATATGCAC
67275223 ATGAT
1 ATGAT
67275228 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:67275227 original size:20 final size:20
Alignment explanation
Indices: 67275161--67275227 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
67275151 ATTTTGATAA
*
67275161 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
67275181 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
67275201 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
67275221 ACATGAT
1 ACATGAT
67275228 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:67275356 original size:24 final size:24
Alignment explanation
Indices: 67275277--67275380 Score: 167
Period size: 23 Copynumber: 4.4 Consensus size: 24
67275267 GAGGAAGTGA
*
67275277 AAAAAGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
67275301 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
67275324 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
67275347 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
67275371 AAAAGAGGCT
1 AAAAG-GGCT
67275381 AGGCCTCTAG
Statistics
Matches: 76, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
23 45 0.59
24 27 0.36
25 4 0.05
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:67275370 original size:47 final size:46
Alignment explanation
Indices: 67275282--67275373 Score: 166
Period size: 47 Copynumber: 2.0 Consensus size: 46
67275272 AGTGAAAAAA
67275282 GGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAG
1 GGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAG
*
67275328 GGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATTAAA
1 GGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTAAA
67275374 AGAGGCTAGG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 19 0.43
47 25 0.57
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (46 bp):
GGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAG
Found at i:67275623 original size:31 final size:31
Alignment explanation
Indices: 67275588--67275651 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
67275578 CGTTTACAGT
*
67275588 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
67275619 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
67275650 AA
1 AA
67275652 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:67277878 original size:13 final size:13
Alignment explanation
Indices: 67277860--67277885 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67277850 AAGTAATCGT
67277860 ACACGGGCGTGTC
1 ACACGGGCGTGTC
67277873 ACACGGGCGTGTC
1 ACACGGGCGTGTC
67277886 CCTACTGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:67297660 original size:14 final size:15
Alignment explanation
Indices: 67297641--67297674 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
67297631 ATTTCCTAAT
67297641 TTTTTTTATTTTT-A
1 TTTTTTTATTTTTCA
*
67297655 TTTTTTTCTTTTTCA
1 TTTTTTTATTTTTCA
67297670 TTTTT
1 TTTTT
67297675 ATCGTCAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTTTATTTTTCA
Found at i:67298288 original size:27 final size:27
Alignment explanation
Indices: 67298250--67298302 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
67298240 TTTCATTTGA
*
67298250 ATGTTATGTCCACAGATGAGGGAACTG
1 ATGTTATGTCCACAGAAGAGGGAACTG
67298277 ATGTTATGTCCACAGAAGAGGGAACT
1 ATGTTATGTCCACAGAAGAGGGAACT
67298303 ATGGAAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (27 bp):
ATGTTATGTCCACAGAAGAGGGAACTG
Found at i:67307708 original size:21 final size:21
Alignment explanation
Indices: 67307682--67307721 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
67307672 AACAAGAACT
*
67307682 CTTGATTTCTTACCTTTTCAC
1 CTTGATTTCTTACATTTTCAC
67307703 CTTGATTTCTTACATTTTC
1 CTTGATTTCTTACATTTTC
67307722 TTAACTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.25, G:0.05, T:0.55
Consensus pattern (21 bp):
CTTGATTTCTTACATTTTCAC
Found at i:67309519 original size:25 final size:25
Alignment explanation
Indices: 67309465--67309527 Score: 94
Period size: 24 Copynumber: 2.6 Consensus size: 25
67309455 TTTTCTAGGT
*
67309465 TATTTTTGGTGTTATTTCATTGTTG
1 TATTTTTGGTGTTACTTCATTGTTG
67309490 T-TTTTTGGTGTTACTTCATTGTT-
1 TATTTTTGGTGTTACTTCATTGTTG
67309513 TAATTTTTGGTGTTA
1 T-ATTTTTGGTGTTA
67309528 AATCTCAACT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
23 1 0.03
24 21 0.60
25 13 0.37
ACGTcount: A:0.13, C:0.05, G:0.19, T:0.63
Consensus pattern (25 bp):
TATTTTTGGTGTTACTTCATTGTTG
Found at i:67317544 original size:4 final size:4
Alignment explanation
Indices: 67317535--67317559 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
67317525 TCATTGTTTT
67317535 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
67317560 AAGCAAAGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:67324960 original size:48 final size:50
Alignment explanation
Indices: 67324904--67325003 Score: 150
Period size: 51 Copynumber: 2.0 Consensus size: 50
67324894 CTAAGCTAAA
67324904 TTAAATTACAT-A-AACAACCAAAATTGATCATTAATTCCAAGCATAATG
1 TTAAATTACATAACAACAACCAAAATTGATCATTAATTCCAAGCATAATG
* * *
67324952 TTAAATTACATAAACAACAACCAAAATTGGTGATTAGTTCCAAGCATAATG
1 TTAAATTACAT-AACAACAACCAAAATTGATCATTAATTCCAAGCATAATG
67325003 T
1 T
67325004 ATATCAACGT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
48 11 0.24
50 1 0.02
51 34 0.74
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.29
Consensus pattern (50 bp):
TTAAATTACATAACAACAACCAAAATTGATCATTAATTCCAAGCATAATG
Found at i:67329483 original size:11 final size:11
Alignment explanation
Indices: 67329467--67329491 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
67329457 TTATATTTTT
67329467 TAATATTTCAA
1 TAATATTTCAA
67329478 TAATATTTCAA
1 TAATATTTCAA
67329489 TAA
1 TAA
67329492 AACTAAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (11 bp):
TAATATTTCAA
Found at i:67330406 original size:14 final size:16
Alignment explanation
Indices: 67330387--67330421 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
67330377 ATTCCACATA
67330387 CAAAAA-CATATTTC-
1 CAAAAAGCATATTTCT
67330401 CAAAAAGCATATTTCT
1 CAAAAAGCATATTTCT
67330417 CAAAA
1 CAAAA
67330422 CATGTTGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.32
15 8 0.42
16 5 0.26
ACGTcount: A:0.51, C:0.20, G:0.03, T:0.26
Consensus pattern (16 bp):
CAAAAAGCATATTTCT
Found at i:67342777 original size:18 final size:18
Alignment explanation
Indices: 67342754--67343036 Score: 155
Period size: 18 Copynumber: 15.3 Consensus size: 18
67342744 GAATAATTAT
67342754 TTATTCAGTAACAATCAG
1 TTATTCAGTAACAATCAG
* *
67342772 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAG
* *
67342790 TTATTCAATAATAA-CTAG
1 TTATTCAGTAACAATC-AG
*
67342808 TTATTCAGTATCAATCAATTGATCGG
1 TTATTCAG--T-AA-C-A---ATCAG
* * *
67342834 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
67342852 TTATTCAGTAA-AATCAG
1 TTATTCAGTAACAATCAG
* * *
67342869 ATATTCAGTAACTATTAAG
1 TTATTCAGTAAC-AATCAG
**
67342888 TTATTCAGTGGCAATCA-
1 TTATTCAGTAACAATCAG
*
67342905 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAATCAG
** *
67342924 TTATTCAGTAATGATCAA
1 TTATTCAGTAACAATCAG
* *
67342942 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAATCAG
*
67342960 TTATTCAGTAACAGTC--
1 TTATTCAGTAACAATCAG
* * * *
67342976 TAATATCTAGTAACAGTTAA
1 TTAT-TC-AGTAACAATCAG
* *
67342996 TTA-TCAGGTAACAATTAA
1 TTATTCA-GTAACAATCAG
*
67343014 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAATCAG
67343032 TTATT
1 TTATT
67343037 TTATACCTTT
Statistics
Matches: 204, Mismatches: 41, Indels: 40
0.72 0.14 0.14
Matches are distributed among these distances:
16 3 0.01
17 20 0.10
18 142 0.70
19 18 0.09
20 3 0.01
21 3 0.01
22 1 0.00
23 3 0.01
24 1 0.00
26 9 0.04
27 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAATCAG
Found at i:67342796 original size:36 final size:36
Alignment explanation
Indices: 67342754--67343036 Score: 193
Period size: 36 Copynumber: 7.6 Consensus size: 36
67342744 GAATAATTAT
*
67342754 TTATTCAGTAACAATCAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * *
67342790 TTATTCAATAATAA-CTAGTTATTCAGTATCAATCAA
1 TTATTCAGTAACAATC-AGTTATTCAGTAACAATCAA
* *
67342826 TTGATCGGTTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA
1 TT-A-----T-T-CAGTAACAATCAGTTATTCAGTAACAATCA-A
* * **
67342870 -TATTCAGTAACTATTAAGTTATTCAGTGGCAATC-A
1 TTATTCAGTAAC-AATCAGTTATTCAGTAACAATCAA
* **
67342905 TTCATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 TT-ATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * *
67342942 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATC-AA
* * * *
67342979 -TA-TCTAGTAACAGTTAATTA-TCAGGTAACAATTAA
1 TTATTC-AGTAACAATCAGTTATTCA-GTAACAATCAA
*
67343014 TTATTCAGTAATAATCAGTTATT
1 TTATTCAGTAACAATCAGTTATT
67343037 TTATACCTTT
Statistics
Matches: 188, Mismatches: 37, Indels: 43
0.70 0.14 0.16
Matches are distributed among these distances:
35 16 0.09
36 121 0.64
37 23 0.12
42 2 0.01
43 7 0.04
44 18 0.10
45 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (36 bp):
TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
Found at i:67342903 original size:80 final size:80
Alignment explanation
Indices: 67342754--67342904 Score: 182
Period size: 80 Copynumber: 1.9 Consensus size: 80
67342744 GAATAATTAT
* * * *
67342754 TTATTCAGTAACAATCAGTTATTCGGTAACAATCAATTATTCAATAATAACTAGTTATTCAGTAT
1 TTATCCAGTAACAATCAATTATTCAGTAACAATCAATTATTCAATAATAACTAGTTATTCAGTAG
67342819 CAATCAATTGATCGG
66 CAATCAATTGATCGG
* * *
67342834 TTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA-TATTCAGTAACT-ATTAAGTTATTCAG
1 TTATCCAGTAACAATCAATTATTCAGTAACAATCA-ATTATTCAATAA-TAACT-AGTTATTCAG
*
67342896 TGGCAATCA
63 TAGCAATCA
67342905 TTCATTCAGT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
79 16 0.27
80 44 0.73
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (80 bp):
TTATCCAGTAACAATCAATTATTCAGTAACAATCAATTATTCAATAATAACTAGTTATTCAGTAG
CAATCAATTGATCGG
Found at i:67343297 original size:45 final size:45
Alignment explanation
Indices: 67343204--67343396 Score: 318
Period size: 45 Copynumber: 4.3 Consensus size: 45
67343194 ATCCGGAACA
* * *
67343204 GTAACAGTAACAGTAACAATATTTGACACAC--AGTGTCGAATCG
1 GTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCG
* * *
67343247 ATAACAGTAGCAGTAACAATATTTGACACACAAAGTGCCAAATCG
1 GTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCG
67343292 GTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCG
1 GTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCG
67343337 GTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCG
1 GTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCG
67343382 GTAACAGTAGCAGTA
1 GTAACAGTAGCAGTA
67343397 GCGGTAACAG
Statistics
Matches: 141, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
43 29 0.21
45 112 0.79
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (45 bp):
GTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCG
Found at i:67344208 original size:5 final size:6
Alignment explanation
Indices: 67344169--67344208 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
67344159 ACTTTTCCAA
67344169 TCAATT T-ACATT TCAATT TCAATT TCAATT TCAA-T TCAAT
1 TCAATT TCA-ATT TCAATT TCAATT TCAATT TCAATT TCAAT
67344209 AACAATTCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 6 0.19
6 24 0.77
7 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.00, T:0.47
Consensus pattern (6 bp):
TCAATT
Found at i:67344256 original size:21 final size:21
Alignment explanation
Indices: 67344181--67344262 Score: 53
Period size: 21 Copynumber: 3.8 Consensus size: 21
67344171 AATTTACATT
*
67344181 TCAAT-TTCAATTTCAATTTCAA
1 TCAATATTCAA-TTCAATAT-AA
* *
67344203 TTCAATA-ACAATTCACATATAT
1 -TCAATATTCAATTCA-ATATAA
*
67344225 TC-ATAAATCAATTCAATATAA
1 TCAAT-ATTCAATTCAATATAA
*
67344246 TCAATATTCAATCCAAT
1 TCAATATTCAATTCAAT
67344263 TCATATAATC
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
20 2 0.04
21 20 0.43
22 14 0.30
23 11 0.23
ACGTcount: A:0.44, C:0.18, G:0.00, T:0.38
Consensus pattern (21 bp):
TCAATATTCAATTCAATATAA
Found at i:67345509 original size:2 final size:2
Alignment explanation
Indices: 67345502--67345553 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
67345492 TGTTTTACTT
67345502 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
67345544 TA TA TA TA TA
1 TA TA TA TA TA
67345554 ACAATAATAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:67347689 original size:29 final size:29
Alignment explanation
Indices: 67347656--67347737 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
67347646 TGACGAGATC
67347656 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
*
67347685 GGCACTAAGTGTGCGTGCTGGAAATATTT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
67347714 GGCACTAAGTGTGCAAGCTGGAAA
1 GGCACTAAGTGTGCGTGCTGGAAA
67347738 AAATACGGCA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:67349759 original size:27 final size:26
Alignment explanation
Indices: 67349729--67349786 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
67349719 GATGGGGGTT
* *
67349729 GGGATGGGAGGGAGTAAAAGTTTTTAG
1 GGGAAGGGA-GGAGTAAAAGTTTTGAG
*
67349756 GGGAAAGTGAGGAGTAAAAGTTTTGAG
1 GGG-AAGGGAGGAGTAAAAGTTTTGAG
67349783 GGGA
1 GGGA
67349787 GTTTGGGAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.04
27 22 0.81
28 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.45, T:0.22
Consensus pattern (26 bp):
GGGAAGGGAGGAGTAAAAGTTTTGAG
Found at i:67350402 original size:25 final size:25
Alignment explanation
Indices: 67350346--67350396 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
67350336 AATTAATAAT
67350346 AAATTTTTCCATGGCATGTAAAATC
1 AAATTTTTCCATGGCATGTAAAATC
*
67350371 AAATTTTTTCATGGCATGTAAAATC
1 AAATTTTTCCATGGCATGTAAAATC
67350396 A
1 A
67350397 TCTTTTACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (25 bp):
AAATTTTTCCATGGCATGTAAAATC
Found at i:67352353 original size:152 final size:153
Alignment explanation
Indices: 67352068--67352363 Score: 522
Period size: 152 Copynumber: 1.9 Consensus size: 153
67352058 GTGCAAATTC
* *
67352068 CCTTTCATGCTTTTTCACCTTTAGACCTAGAATTCTATCTACCTCGTTGAGATCCTTCATCTTAA
1 CCTTTCATACTTTTTCACCTTTAGACCTAAAATTCTATCTACCTCGTTGAGATCCTTCATCTTAA
* *
67352133 AATTTGAGGCTAGATACTCTTTGGTCTCACGAATACCTTTCATGTTCGTCCCAAAAATTAACAAA
66 AATTTGAGGCTAGATACTCTTTGGTCTCACGAACACCTTTCATGTTCATCCCAAAAATTAACAAA
67352198 TCATCTACATAGAATTCTATCTA
131 TCATCTACATAGAATTCTATCTA
*
67352221 CCTTT-ATACTTTTTCACCTTTATACCTAAAATTCTATCTACCTCGTTGAGATCCTTCATCTTAA
1 CCTTTCATACTTTTTCACCTTTAGACCTAAAATTCTATCTACCTCGTTGAGATCCTTCATCTTAA
*
67352285 AATTTGAGGCTAGATACTTTTTGGTCTCACGAACACCTTTCATGTTCATCCCAAAAATTAACAAA
66 AATTTGAGGCTAGATACTCTTTGGTCTCACGAACACCTTTCATGTTCATCCCAAAAATTAACAAA
*
67352350 TCATTTACATAGAA
131 TCATCTACATAGAA
67352364 ACAAATAATT
Statistics
Matches: 136, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
152 131 0.96
153 5 0.04
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (153 bp):
CCTTTCATACTTTTTCACCTTTAGACCTAAAATTCTATCTACCTCGTTGAGATCCTTCATCTTAA
AATTTGAGGCTAGATACTCTTTGGTCTCACGAACACCTTTCATGTTCATCCCAAAAATTAACAAA
TCATCTACATAGAATTCTATCTA
Found at i:67377510 original size:49 final size:49
Alignment explanation
Indices: 67377453--67377550 Score: 124
Period size: 49 Copynumber: 2.0 Consensus size: 49
67377443 TGCGAGCCTA
* * * *
67377453 TTGAAGACACCAACTGAAGACAGTAAGCCAAAGTGTGAGCCTGTTAAAG
1 TTGAAGACACCAACTGAAGACAGTAAGCAAAAATGCGAGCCTGTCAAAG
*** *
67377502 TTGAAGACACCTGTTGAAGATAGTAAGCAAAAATGCGAGCCTGTCAAAG
1 TTGAAGACACCAACTGAAGACAGTAAGCAAAAATGCGAGCCTGTCAAAG
67377551 GTGTATGGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.19
Consensus pattern (49 bp):
TTGAAGACACCAACTGAAGACAGTAAGCAAAAATGCGAGCCTGTCAAAG
Found at i:67377617 original size:72 final size:72
Alignment explanation
Indices: 67377498--67377644 Score: 231
Period size: 72 Copynumber: 2.0 Consensus size: 72
67377488 TGAGCCTGTT
* * * *
67377498 AAAGTTGAAGACACCTGTTGAAGATAGTAAGCAAAAATGCGAGCCTGTCAAAGGTGTATGGTTGC
1 AAAGTTGAAGACACCTGTTGAAGACAGTAAACAAAAATGCGAACCTGTCAAAGGTGTATAGTTGC
67377563 AAGCAGC
66 AAGCAGC
* *
67377570 AAAGTTGAAGACACTTGTTGAAGACAGTAAACAAAAATGTGAACCTGTCAAAGGTGTATAGTTGC
1 AAAGTTGAAGACACCTGTTGAAGACAGTAAACAAAAATGCGAACCTGTCAAAGGTGTATAGTTGC
*
67377635 GAGCAGC
66 AAGCAGC
67377642 AAA
1 AAA
67377645 ATGCAAGCCC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (72 bp):
AAAGTTGAAGACACCTGTTGAAGACAGTAAACAAAAATGCGAACCTGTCAAAGGTGTATAGTTGC
AAGCAGC
Found at i:67380178 original size:11 final size:11
Alignment explanation
Indices: 67380147--67380184 Score: 53
Period size: 10 Copynumber: 3.6 Consensus size: 11
67380137 ATAGATTATT
*
67380147 AAAA-ATTTAT
1 AAAATATTTAA
67380157 AAAAT-TTTAA
1 AAAATATTTAA
67380167 AAAATATTTAA
1 AAAATATTTAA
67380178 AAAATAT
1 AAAATAT
67380185 AAAATTCGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 13 0.52
11 12 0.48
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
AAAATATTTAA
Found at i:67381793 original size:70 final size:70
Alignment explanation
Indices: 67381680--67381824 Score: 272
Period size: 70 Copynumber: 2.1 Consensus size: 70
67381670 TTCTTCACTA
*
67381680 TTCTTGTACCATTAACTACTTTGAGTGTGGGTTCGAACGATTCGAATCAAACACAAAACCATAAA
1 TTCTTGTACCATTAACTACTTTGAGTGTGAGTTCGAACGATTCGAATCAAACACAAAACCATAAA
67381745 TAGTT
66 TAGTT
*
67381750 TTCTTGTACCATTAACTACTTTGAGTGTGAGTTCGAACGATTCGAATCAAACACAGAACCATAAA
1 TTCTTGTACCATTAACTACTTTGAGTGTGAGTTCGAACGATTCGAATCAAACACAAAACCATAAA
67381815 TAGTT
66 TAGTT
67381820 TTCTT
1 TTCTT
67381825 TACTTTCAAC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 73 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (70 bp):
TTCTTGTACCATTAACTACTTTGAGTGTGAGTTCGAACGATTCGAATCAAACACAAAACCATAAA
TAGTT
Found at i:67384756 original size:19 final size:20
Alignment explanation
Indices: 67384732--67384769 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
67384722 TAAGTTTTGA
67384732 AATTTATT-CAATTTAGTCT
1 AATTTATTGCAATTTAGTCT
67384751 AATTTATTGCAATTTAGTC
1 AATTTATTGCAATTTAGTC
67384770 CCTAACCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.50
Consensus pattern (20 bp):
AATTTATTGCAATTTAGTCT
Found at i:67389728 original size:2 final size:2
Alignment explanation
Indices: 67389721--67389758 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
67389711 TTTATTTCAC
67389721 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67389759 TGTACTAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67395274 original size:3 final size:3
Alignment explanation
Indices: 67395263--67395321 Score: 55
Period size: 3 Copynumber: 19.7 Consensus size: 3
67395253 GGAGGAAGAC
* * * * * *
67395263 GAT GGT GAT GAT GAC AAT GAT GAT GAC AAT GAT GAT GAC GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
*
67395311 GGT GAT GAT GA
1 GAT GAT GAT GA
67395322 GGAGGAGGAG
Statistics
Matches: 42, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.34, C:0.05, G:0.34, T:0.27
Consensus pattern (3 bp):
GAT
Found at i:67395285 original size:12 final size:12
Alignment explanation
Indices: 67395268--67395311 Score: 79
Period size: 12 Copynumber: 3.7 Consensus size: 12
67395258 AAGACGATGG
67395268 TGATGATGACAA
1 TGATGATGACAA
67395280 TGATGATGACAA
1 TGATGATGACAA
*
67395292 TGATGATGACGA
1 TGATGATGACAA
67395304 TGATGATG
1 TGATGATG
67395312 GTGATGATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.36, C:0.07, G:0.30, T:0.27
Consensus pattern (12 bp):
TGATGATGACAA
Found at i:67395317 original size:12 final size:12
Alignment explanation
Indices: 67395268--67395321 Score: 72
Period size: 12 Copynumber: 4.5 Consensus size: 12
67395258 AAGACGATGG
*
67395268 TGATGATGACAA
1 TGATGATGACGA
*
67395280 TGATGATGACAA
1 TGATGATGACGA
67395292 TGATGATGACGA
1 TGATGATGACGA
**
67395304 TGATGATGGTGA
1 TGATGATGACGA
67395316 TGATGA
1 TGATGA
67395322 GGAGGAGGAG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.35, C:0.06, G:0.31, T:0.28
Consensus pattern (12 bp):
TGATGATGACGA
Found at i:67397575 original size:164 final size:164
Alignment explanation
Indices: 67397384--67397712 Score: 640
Period size: 164 Copynumber: 2.0 Consensus size: 164
67397374 AGGGATCGTC
*
67397384 AGAGACTTCATTGCACTATCGATCATCTATTTTGGTACTTTTGAAGCTATGTATGTATGGTATAT
1 AGAGACTTCATCGCACTATCGATCATCTATTTTGGTACTTTTGAAGCTATGTATGTATGGTATAT
67397449 GGCATGTATAGGCTTGTATCAATTTGGTATGTTTGATGGATGTGTATTTTGGCCATTTATGTTGG
66 GGCATGTATAGGCTTGTATCAATTTGGTATGTTTGATGGATGTGTATTTTGGCCATTTATGTTGG
67397514 CATAAGATGATAAACTTGATGATGTTTTATGTTT
131 CATAAGATGATAAACTTGATGATGTTTTATGTTT
67397548 AGAGACTTCATCGCACTATCGATCATCTATTTTGGTACTTTTGAAGCTATGTATGTATGGTATAT
1 AGAGACTTCATCGCACTATCGATCATCTATTTTGGTACTTTTGAAGCTATGTATGTATGGTATAT
67397613 GGCATGTATAGGCTTGTATCAATTTGGTATGTTTGATGGATGTGTATTTTGGCCATTTATGTTGG
66 GGCATGTATAGGCTTGTATCAATTTGGTATGTTTGATGGATGTGTATTTTGGCCATTTATGTTGG
*
67397678 CATAAGATGATAAACTTGATTATGTTTTATGTTT
131 CATAAGATGATAAACTTGATGATGTTTTATGTTT
67397712 A
1 A
67397713 ATGTTTGGTA
Statistics
Matches: 163, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
164 163 1.00
ACGTcount: A:0.25, C:0.10, G:0.22, T:0.43
Consensus pattern (164 bp):
AGAGACTTCATCGCACTATCGATCATCTATTTTGGTACTTTTGAAGCTATGTATGTATGGTATAT
GGCATGTATAGGCTTGTATCAATTTGGTATGTTTGATGGATGTGTATTTTGGCCATTTATGTTGG
CATAAGATGATAAACTTGATGATGTTTTATGTTT
Found at i:67399375 original size:17 final size:18
Alignment explanation
Indices: 67399353--67399392 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
67399343 AAAATGAGAG
*
67399353 AAAAGAAAA-GGAAAAAA
1 AAAAGAAAATAGAAAAAA
*
67399370 AAAAGAAAATAGAAAAAT
1 AAAAGAAAATAGAAAAAA
67399388 AAAAG
1 AAAAG
67399393 TACTCATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (18 bp):
AAAAGAAAATAGAAAAAA
Done.