Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 225 of 335
Found at i:67729188 original size:35 final size:34
Alignment explanation
Indices: 67729149--67729246 Score: 87
Period size: 32 Copynumber: 2.9 Consensus size: 34
67729139 ATTTTCTTTT
67729149 AAATTAAAGTTAAAAGATAATAGTATTTTAATAA-A
1 AAATTAAA-TTAAAAGATAATA-TATTTTAATAAGA
** *
67729184 AAATTTCCTATTAAAA-TTAA-A-ATTTTAATAAGA
1 AAA-TT-AAATTAAAAGATAATATATTTTAATAAGA
*
67729217 AAATAAAATTAAAAGATAATAATATTTTAA
1 AAATTAAATTAAAAGATAAT-ATATTTTAA
67729247 GTTGTATTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
31 7 0.14
32 14 0.29
33 4 0.08
34 2 0.04
35 13 0.27
36 8 0.16
37 1 0.02
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (34 bp):
AAATTAAATTAAAAGATAATATATTTTAATAAGA
Found at i:67729223 original size:19 final size:18
Alignment explanation
Indices: 67729196--67729246 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 18
67729186 ATTTCCTATT
67729196 AAAATTAAAATTTTAATAAG
1 AAAA-TAAAATTTTAA-AAG
67729216 AAAATAAAA--TTAAAAG
1 AAAATAAAATTTTAAAAG
* *
67729232 ATAATAATATTTTAA
1 AAAATAAAATTTTAA
67729247 GTTGTATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
16 10 0.37
17 4 0.15
18 4 0.15
19 5 0.19
20 4 0.15
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (18 bp):
AAAATAAAATTTTAAAAG
Found at i:67729822 original size:21 final size:21
Alignment explanation
Indices: 67729796--67729835 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
67729786 TATTATATAC
67729796 AAAAAAAATGATAATTGAACA
1 AAAAAAAATGATAATTGAACA
67729817 AAAAAAAATGATAATTGAA
1 AAAAAAAATGATAATTGAA
67729836 TGTTCAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.68, C:0.03, G:0.10, T:0.20
Consensus pattern (21 bp):
AAAAAAAATGATAATTGAACA
Found at i:67733615 original size:2 final size:2
Alignment explanation
Indices: 67733599--67733638 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
67733589 TTCTTTGTTT
67733599 TA TA T- TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
67733639 CTTAGACATT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:67737539 original size:39 final size:39
Alignment explanation
Indices: 67737495--67737593 Score: 162
Period size: 39 Copynumber: 2.5 Consensus size: 39
67737485 CATATTCATT
* *
67737495 TTTAAGCATATATCACATTGCACATATAACCACATAACA
1 TTTAAGCATATATCACAATACACATATAACCACATAACA
* *
67737534 TTTAAGCATATATCACAATACCCATATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAACCACATAACA
67737573 TTTAAGCATATATCACAATAC
1 TTTAAGCATATATCACAATAC
67737594 TCAAAAACAT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.44, C:0.22, G:0.04, T:0.29
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACACATATAACCACATAACA
Found at i:67737550 original size:22 final size:22
Alignment explanation
Indices: 67737525--67737589 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
67737515 CACATATAAC
67737525 CACATAACATTTAAGCATATAT
1 CACATAACATTTAAGCATATAT
**
67737547 CAC---A-A--TACCCATATAAT
1 CACATAACATTTAAGCATAT-AT
67737564 CACATAACATTTAAGCATATAT
1 CACATAACATTTAAGCATATAT
67737586 CACA
1 CACA
67737590 ATACTCAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
16 7 0.22
17 5 0.16
18 1 0.03
19 1 0.03
20 1 0.03
21 1 0.03
22 9 0.28
23 7 0.22
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.28
Consensus pattern (22 bp):
CACATAACATTTAAGCATATAT
Found at i:67745288 original size:29 final size:29
Alignment explanation
Indices: 67745242--67745525 Score: 161
Period size: 29 Copynumber: 9.9 Consensus size: 29
67745232 TGTACTAAAT
* *
67745242 GATGGTC-ATAACCGTCCCTTTTCATATTC
1 GATGGTCGA-AACCATCCCTTTTCATAATC
*
67745271 GATGGTTGAAACCATCCCTTTTCATTAATC
1 GATGGTCGAAACCATCCCTTTTCA-TAATC
** * *
67745301 GATGGTCGTCACCATCCCTTTTCATAGTT
1 GATGGTCGAAACCATCCCTTTTCATAATC
** *
67745330 GATGGTCGTCATCATCCCTTTTCATAATC
1 GATGGTCGAAACCATCCCTTTTCATAATC
* * * *
67745359 GATAGCCGAAGCTATCCCTTTTCATAATC
1 GATGGTCGAAACCATCCCTTTTCATAATC
* * * * *
67745388 GATAG-CTGAAGCTATCCCTCTTCATATTC
1 GATGGTC-GAAACCATCCCTTTTCATAATC
** * * *
67745417 GATGGTCG---TTATCCCTTTTCGTAGTT
1 GATGGTCGAAACCATCCCTTTTCATAATC
***
67745443 GATGGTCCTCACCATCCCTTTTCATAAAT-
1 GATGGTCGAAACCATCCCTTTTCAT-AATC
* * * * *
67745472 GATAG-CGGAAGCTATCCCTTTTCATATTA
1 GATGGTC-GAAACCATCCCTTTTCATAATC
*
67745501 GATGGTC-ATCACCATCCCTTTTCAT
1 GATGGTCGA-AACCATCCCTTTTCAT
67745526 TCTCCTCGAT
Statistics
Matches: 201, Mismatches: 42, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
26 20 0.10
28 5 0.02
29 146 0.73
30 30 0.15
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (29 bp):
GATGGTCGAAACCATCCCTTTTCATAATC
Found at i:67745446 original size:26 final size:26
Alignment explanation
Indices: 67745400--67745449 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
67745390 TAGCTGAAGC
67745400 TATCCCTCTTCATATTCGATGGTCGT
1 TATCCCTCTTCATATTCGATGGTCGT
* *
67745426 TATCCCTTTTCGTAGTT-GATGGTC
1 TATCCCTCTTCATA-TTCGATGGTC
67745450 CTCACCATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.44
Consensus pattern (26 bp):
TATCCCTCTTCATATTCGATGGTCGT
Found at i:67745460 original size:113 final size:115
Alignment explanation
Indices: 67745256--67745497 Score: 328
Period size: 113 Copynumber: 2.1 Consensus size: 115
67745246 GTCATAACCG
* * * *
67745256 TCCCTTTTCATATTCGATGGTTGAAACCATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTT
1 TCCCTTTTCATAATCGATAGCTGAAACCATCCCTCTTCATTAATCGATGGTCGT--CCATCCCTT
* *
67745321 TTCATAGTTGATGGTCGTCATCATCCCTTTTCAT-AATCGATAGCCGAAGCTA
64 TTCATAGTTGATGGTCCTCACCATCCCTTTTCATAAAT-GATAGCCGAAGCTA
* * * *
67745373 TCCCTTTTCATAATCGATAGCTGAAGCTATCCCTCTTCA-TATTCGATGGTCGT-TATCCCTTTT
1 TCCCTTTTCATAATCGATAGCTGAAACCATCCCTCTTCATTAATCGATGGTCGTCCATCCCTTTT
* *
67745436 CGTAGTTGATGGTCCTCACCATCCCTTTTCATAAATGATAGCGGAAGCTA
66 CATAGTTGATGGTCCTCACCATCCCTTTTCATAAATGATAGCCGAAGCTA
67745486 TCCCTTTTCATA
1 TCCCTTTTCATA
67745498 TTAGATGGTC
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
113 63 0.56
114 3 0.03
116 13 0.12
117 33 0.29
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.37
Consensus pattern (115 bp):
TCCCTTTTCATAATCGATAGCTGAAACCATCCCTCTTCATTAATCGATGGTCGTCCATCCCTTTT
CATAGTTGATGGTCCTCACCATCCCTTTTCATAAATGATAGCCGAAGCTA
Found at i:67745505 original size:58 final size:57
Alignment explanation
Indices: 67745256--67745525 Score: 203
Period size: 58 Copynumber: 4.7 Consensus size: 57
67745246 GTCATAACCG
**** * ** *
67745256 TCCCTTTTCATATTCGATGGTTGAAACCATCCCTTTTCATTAATCGATGGTCGTCA-CCA
1 TCCCTTTTCATATT-GATGGTCCTCACCATCCCTTTTCA-TAATCGATAG-CGGAAGCTA
* * *
67745315 TCCCTTTTCATAGTTGATGGTCGTCATCATCCCTTTTCATAATCGATAGCCGAAGCTA
1 TCCCTTTTCATA-TTGATGGTCCTCACCATCCCTTTTCATAATCGATAGCGGAAGCTA
* * * * * * ** *
67745373 TCCCTTTTCATAATCGATAG--CTGAAGCTATCCCTCTTCATATTCGAT---GGTCGTTA
1 TCCCTTTTCAT-ATTGATGGTCCT-CA-CCATCCCTTTTCATAATCGATAGCGGAAGCTA
*
67745428 TCCCTTTTCGTAGTTGATGGTCCTCACCATCCCTTTTCATAAAT-GATAGCGGAAGCTA
1 TCCCTTTTCATA-TTGATGGTCCTCACCATCCCTTTTCAT-AATCGATAGCGGAAGCTA
*
67745486 TCCCTTTTCATATTAGATGGTCATCACCATCCCTTTTCAT
1 TCCCTTTTCATATT-GATGGTCCTCACCATCCCTTTTCAT
67745526 TCTCCTCGAT
Statistics
Matches: 165, Mismatches: 33, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
54 1 0.01
55 34 0.21
56 4 0.02
57 7 0.04
58 84 0.51
59 33 0.20
60 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.14, T:0.37
Consensus pattern (57 bp):
TCCCTTTTCATATTGATGGTCCTCACCATCCCTTTTCATAATCGATAGCGGAAGCTA
Found at i:67745518 original size:113 final size:114
Alignment explanation
Indices: 67745256--67745525 Score: 325
Period size: 113 Copynumber: 2.4 Consensus size: 114
67745246 GTCATAACCG
*
67745256 TCCCTTTTCATATTCGATGGTTGA-AACCATCCCTTTTCATTAATCGATGGTCGTCACCATCCCT
1 TCCCTTTTCATATTCGATGG-TCATAACCATCCCTTTTCA-TAATCGATGGTCGT--CCATCCCT
* *
67745320 TTTCATAGTTGATGGTCGTCATCATCCCTTTTCATAATCGATAGCCGAAGCTA
62 TTTCATAGTTGATGGTCCTCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
* * * * * *
67745373 TCCCTTTTCATAATCGATAG-C-TGAAGCTATCCCTCTTCATATTCGATGGTCGT-TATCCCTTT
1 TCCCTTTTCATATTCGATGGTCAT-AA-CCATCCCTTTTCATAATCGATGGTCGTCCATCCCTTT
* *
67745435 TCGTAGTTGATGGTCCTCACCATCCCTTTTCATAAAT-GATAGCGGAAGCTA
64 TCATAGTTGATGGTCCTCACCATCCCTTTTCAT-AATCGATAGCCGAAGCTA
* *
67745486 TCCCTTTTCATATTAGATGGTCATCACCATCCCTTTTCAT
1 TCCCTTTTCATATTCGATGGTCATAACCATCCCTTTTCAT
67745526 TCTCCTCGAT
Statistics
Matches: 130, Mismatches: 17, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
113 80 0.62
114 5 0.04
115 1 0.01
116 15 0.12
117 29 0.22
ACGTcount: A:0.22, C:0.27, G:0.14, T:0.37
Consensus pattern (114 bp):
TCCCTTTTCATATTCGATGGTCATAACCATCCCTTTTCATAATCGATGGTCGTCCATCCCTTTTC
ATAGTTGATGGTCCTCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
Found at i:67746935 original size:26 final size:29
Alignment explanation
Indices: 67746886--67746942 Score: 82
Period size: 27 Copynumber: 2.0 Consensus size: 29
67746876 GGAATGAACT
*
67746886 TATTATTATTATTATTAGATTTTTAATTA
1 TATTATTATTATTATTAGATTTTAAATTA
*
67746915 TATTATTATT-TTTTTAG-TTTTAAATTA
1 TATTATTATTATTATTAGATTTTAAATTA
67746942 T
1 T
67746943 GATTTAAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 10 0.38
28 6 0.23
29 10 0.38
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.65
Consensus pattern (29 bp):
TATTATTATTATTATTAGATTTTAAATTA
Found at i:67748693 original size:21 final size:21
Alignment explanation
Indices: 67748664--67748705 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
67748654 AGCATCATTT
*
67748664 CTTTGATGTCAATCTCCAAAG
1 CTTTAATGTCAATCTCCAAAG
67748685 CTTTAATGTCAATCTCCAAAG
1 CTTTAATGTCAATCTCCAAAG
67748706 ATTGGCGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (21 bp):
CTTTAATGTCAATCTCCAAAG
Found at i:67750391 original size:6 final size:6
Alignment explanation
Indices: 67750380--67750409 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
67750370 GAAATATCGC
*
67750380 AAAGAA AAAGAA AAAGAA AAAGAA ATAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
67750410 TACACAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (6 bp):
AAAGAA
Found at i:67750606 original size:24 final size:24
Alignment explanation
Indices: 67750556--67750607 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
67750546 AATCAATGTC
* * *
67750556 AAATATGTTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
67750580 AAATATATTATACTAATAAATATT
1 AAATATATTATACTAATAAATACT
67750604 AAAT
1 AAAT
67750608 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:67755022 original size:24 final size:24
Alignment explanation
Indices: 67755007--67755058 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
67754997 AATCAATTTC
*
67755007 AAATATATTATGCTAATAAATGTT
1 AAATATATTATACTAATAAATGTT
* *
67755031 AAATATCTTATACTAATAAATATT
1 AAATATATTATACTAATAAATGTT
67755055 AAAT
1 AAAT
67755059 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (24 bp):
AAATATATTATACTAATAAATGTT
Found at i:67757173 original size:25 final size:25
Alignment explanation
Indices: 67757145--67757193 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
67757135 TATACATTCC
* *
67757145 CATTTGTTATGAACATCATTTTATG
1 CATTTATTATCAACATCATTTTATG
* *
67757170 CATTTATTATCAACCTTATTTTAT
1 CATTTATTATCAACATCATTTTAT
67757194 TAAAGCTATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.14, G:0.06, T:0.51
Consensus pattern (25 bp):
CATTTATTATCAACATCATTTTATG
Found at i:67758530 original size:30 final size:31
Alignment explanation
Indices: 67758496--67758558 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 31
67758486 CTTAACAAGT
*
67758496 AAATGCCTCTAAAATAATAA-CAAAATTAAC
1 AAATGCCTCTAAAATAATAATAAAAATTAAC
67758526 AAATGCCTCTAAAATAATAATAAAAATTAAC
1 AAATGCCTCTAAAATAATAATAAAAATTAAC
67758557 AA
1 AA
67758559 TAAAACAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 20 0.65
31 11 0.35
ACGTcount: A:0.59, C:0.14, G:0.03, T:0.24
Consensus pattern (31 bp):
AAATGCCTCTAAAATAATAATAAAAATTAAC
Found at i:67761868 original size:24 final size:24
Alignment explanation
Indices: 67761805--67761861 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
67761795 AAACCTGATT
* * *
67761805 CTAATCAATGTCAAATATATTATG
1 CTAATAAATGTTAAATATATTATA
*
67761829 CTTATAAATGTTAAATATATTATA
1 CTAATAAATGTTAAATATATTATA
67761853 CTAATAAAT
1 CTAATAAAT
67761862 TCTAAATCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.40
Consensus pattern (24 bp):
CTAATAAATGTTAAATATATTATA
Found at i:67768096 original size:16 final size:17
Alignment explanation
Indices: 67768067--67768104 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
67768057 GAATAGAAAT
67768067 TAAATAACTGAAATAAA
1 TAAATAACTGAAATAAA
67768084 TAAATAA-TGAAATAAA
1 TAAATAACTGAAATAAA
*
67768100 CAAAT
1 TAAAT
67768105 GACTAAACCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (17 bp):
TAAATAACTGAAATAAA
Found at i:67770125 original size:14 final size:15
Alignment explanation
Indices: 67770108--67770140 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
67770098 TTTTTTTCAA
*
67770108 TTTT-GAATTGTAGT
1 TTTTGGAATTGTAAT
67770122 TTTTGGAATTGTAAT
1 TTTTGGAATTGTAAT
67770137 TTTT
1 TTTT
67770141 ATTAACGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.61
Consensus pattern (15 bp):
TTTTGGAATTGTAAT
Found at i:67781643 original size:222 final size:220
Alignment explanation
Indices: 67781099--67781649 Score: 545
Period size: 222 Copynumber: 2.5 Consensus size: 220
67781089 CAAGTATTTG
* * * * * *
67781099 CTCTAGAGTGCCTCACTT-CCTCAAGGGTGGAAGTATTGTTCCCGAGATGTCTATGCTCGATCTT
1 CTCTAAAGTGACTCA-TTCCCTCAACGGTGGAAGTATTGTTCCTGAGGTGTCTATGCTCGATTTT
* * **
67781163 AGCCTTGAGTTTTGGTTTT-TATACCCTAAGGAGAGCTTAAAGGGGTTCAAGAAGTTTCAATGGA
65 AGCCTCGAGTTTT--TTTTCT-TACTCTAAGGAGAGCCCAAAGGGGTTCAAGAAGTTTCAATGGA
* * * *
67781227 AGCATTTAGGTCCACCAAGAAAATATTTTATAATTTAGCCTTGGTGGGATTCAAACCCATTAAAG
127 AGCACTTAGATCCACCAAGAAAATATTTTATAATTTAGACTTGGTGGGATTCAAACCCATAAAAG
*
67781292 CCACCTTTTATGTTAAGGGTGAGTATCTA
192 CCACCTTTTATGTTAAGGGCGAGTATCTA
* ** * * * * * * *
67781321 CTTTGTAGTGTCTCACTCCCTCAACAGT-AAATGTATTGTTCCTAAGGTATCTATACTCGATTTT
1 CTCTAAAGTGACTCATTCCCTCAACGGTGGAA-GTATTGTTCCTGAGGTGTCTATGCTCGATTTT
* * * * *
67781385 AGCCTCAAGTTTTTCTCTTCCTACTCCAAAGAGAGCCCAAAGGGGTTCACA-AAGTTTCAGTGGA
65 AGCCTCGAGTTTTT-T-TTCTTACTCTAAGGAGAGCCCAAAGGGGTTCA-AGAAGTTTCAATGGA
** * * * * *
67781449 AGTGCTTAGATCCACCAAGAAAATGA-TTTATGATTTGGACTTGGTGGGGTTTAAACTCATAAAA
127 AGCACTTAGATCCACCAAGAAAAT-ATTTTATAATTTAGACTTGGTGGGATTCAAACCCATAAAA
* * * *
67781513 GGCGCCTTTTATTTTGAGGGCGAGTATCTA
191 GCCACCTTTTATGTTAAGGGCGAGTATCTA
* * * * *
67781543 CTCTAAAGTGACTCATTCCCTCAATGGTGGAGGTATTATTCCTGAGGTGTCTATGTTTGATTTTA
1 CTCTAAAGTGACTCATTCCCTCAACGGTGGAAGTATTGTTCCTGAGGTGTCTATGCTCGATTTTA
*
67781608 GCCTCGAGTTTCTTTTTGCTTACTCTAGGGAGAGCCCAAAGG
66 GCCTCGAGTTT-TTTTT-CTTACTCTAAGGAGAGCCCAAAGG
67781650 TAAAGGCAAT
Statistics
Matches: 260, Mismatches: 59, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
220 1 0.00
221 6 0.02
222 248 0.95
223 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.34
Consensus pattern (220 bp):
CTCTAAAGTGACTCATTCCCTCAACGGTGGAAGTATTGTTCCTGAGGTGTCTATGCTCGATTTTA
GCCTCGAGTTTTTTTTCTTACTCTAAGGAGAGCCCAAAGGGGTTCAAGAAGTTTCAATGGAAGCA
CTTAGATCCACCAAGAAAATATTTTATAATTTAGACTTGGTGGGATTCAAACCCATAAAAGCCAC
CTTTTATGTTAAGGGCGAGTATCTA
Found at i:67782235 original size:30 final size:30
Alignment explanation
Indices: 67782201--67782262 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
67782191 ATTTCAATAT
* *
67782201 TTTAAAAGTATAAAGATTAAAATTAATCAA
1 TTTAAAAGTACAAAAATTAAAATTAATCAA
*
67782231 TTTAAAAGTACAAAAATTAAAGTTAATCAA
1 TTTAAAAGTACAAAAATTAAAATTAATCAA
67782261 TT
1 TT
67782263 CAAATATAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (30 bp):
TTTAAAAGTACAAAAATTAAAATTAATCAA
Found at i:67782876 original size:26 final size:24
Alignment explanation
Indices: 67782842--67782909 Score: 65
Period size: 26 Copynumber: 3.0 Consensus size: 24
67782832 TAAATAAAAA
* *
67782842 ATTTTAAAATATAATAAATCAAATAC
1 ATTTAAAAACATAA-AAA-CAAATAC
67782868 ATTTAAAAACATAAAAACAAAT--
1 ATTTAAAAACATAAAAACAAATAC
67782890 A-TT-AAAACA-AAAAACAAATA
1 ATTTAAAAACATAAAAACAAATA
67782910 AAAAATGAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 10 0.26
20 6 0.15
21 2 0.05
22 1 0.03
24 5 0.13
25 3 0.08
26 12 0.31
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.25
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAC
Found at i:67790785 original size:26 final size:26
Alignment explanation
Indices: 67790754--67790861 Score: 146
Period size: 26 Copynumber: 4.2 Consensus size: 26
67790744 TGAAATGTCC
*
67790754 ATCATGGAACATTTACCTAAACCATT
1 ATCATGAAACATTTACCTAAACCATT
*
67790780 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATT
* * *
67790806 ATCATGGAATATTTACCT-AACCTTTT
1 ATCATGAAACATTTACCTAAACC-ATT
*
67790832 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATT
67790858 ATCA
1 ATCA
67790862 ATTTTTATCA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
25 3 0.04
26 64 0.91
27 3 0.04
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAAACCATT
Found at i:67790834 original size:52 final size:52
Alignment explanation
Indices: 67790754--67790861 Score: 182
Period size: 52 Copynumber: 2.1 Consensus size: 52
67790744 TGAAATGTCC
67790754 ATCATGGAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCATT
* *
67790806 ATCATGGAATATTTACCT-AACCTTTTATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACC-ATTATCATGAAACATTTACCTAACCCATT
67790858 ATCA
1 ATCA
67790862 ATTTTTATCA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
51 4 0.08
52 49 0.92
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGAAACATTTACCTAACCCATT
Found at i:67800828 original size:56 final size:55
Alignment explanation
Indices: 67800742--67800849 Score: 171
Period size: 56 Copynumber: 1.9 Consensus size: 55
67800732 GTATCAATTG
* * *
67800742 GATGATAAATCATTATTTTTAATTTGAATAGTACTTATGAATAATTAAATTTGTAA
1 GATGATAAATCATCACTTTTAATTTGAATAGTACTAATGAATAATT-AATTTGTAA
*
67800798 GATGATAAATCATCACTTTTAATTTGAATAGTGCTAATGAATAATTAATTTG
1 GATGATAAATCATCACTTTTAATTTGAATAGTACTAATGAATAATTAATTTG
67800850 GAATCTATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
55 6 0.12
56 42 0.88
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.43
Consensus pattern (55 bp):
GATGATAAATCATCACTTTTAATTTGAATAGTACTAATGAATAATTAATTTGTAA
Found at i:67804129 original size:22 final size:22
Alignment explanation
Indices: 67804086--67804130 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
67804076 TAACAACCCA
67804086 AAATTTGAAAAAAGTCACTAAT
1 AAATTTGAAAAAAGTCACTAAT
* *
67804108 AAATTTTAAATAAA-TCATTAAT
1 AAATTTGAAA-AAAGTCACTAAT
67804130 A
1 A
67804131 TTTTTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (22 bp):
AAATTTGAAAAAAGTCACTAAT
Found at i:67805886 original size:23 final size:25
Alignment explanation
Indices: 67805860--67805906 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
67805850 AATGTTTTGT
67805860 AATATATATTTTT-AAAA-ATTTTA
1 AATATATATTTTTGAAAATATTTTA
*
67805883 AATATATTTTTTTGAAAATATTTT
1 AATATATATTTTTGAAAATATTTT
67805907 TTAAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.57
24 4 0.19
25 5 0.24
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (25 bp):
AATATATATTTTTGAAAATATTTTA
Found at i:67805928 original size:21 final size:22
Alignment explanation
Indices: 67805900--67805959 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
67805890 TTTTTTGAAA
* *
67805900 ATAT-TTTTTAAAATTTTAAAT
1 ATATATTTTTAAAATATCAAAT
* *
67805921 AT-TATTTTTTAAGTATCAAAT
1 ATATATTTTTAAAATATCAAAT
67805942 ATATATTTTTAATAATAT
1 ATATATTTTTAA-AATAT
67805960 AAAACATTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
20 1 0.03
21 17 0.57
22 8 0.27
23 4 0.13
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
ATATATTTTTAAAATATCAAAT
Found at i:67806019 original size:13 final size:13
Alignment explanation
Indices: 67806001--67806026 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67805991 TAGTTTTATA
67806001 ATATTTTAAATTT
1 ATATTTTAAATTT
67806014 ATATTTTAAATTT
1 ATATTTTAAATTT
67806027 TAAATATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATATTTTAAATTT
Found at i:67806041 original size:29 final size:29
Alignment explanation
Indices: 67805994--67806060 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
67805984 TTATTATTAG
67805994 TTTTATAATATTTTAAATTTATATTT-TAA-A
1 TTTTA-AATATTTTAAATTT-T-TTTATAATA
*
67806024 TTTTAAATATTTTTAATTTTTTTATAATA
1 TTTTAAATATTTTAAATTTTTTTATAATA
67806053 TTTTAAAT
1 TTTTAAAT
67806061 TATGATTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
27 3 0.09
28 4 0.12
29 22 0.65
30 5 0.15
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (29 bp):
TTTTAAATATTTTAAATTTTTTTATAATA
Found at i:67806054 original size:20 final size:19
Alignment explanation
Indices: 67806024--67806061 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
67806014 ATATTTTAAA
*
67806024 TTTTAAATATTTTTAATTT
1 TTTTAAATATTTTAAATTT
67806043 TTTTATAATATTTTAAATT
1 TTTTA-AATATTTTAAATT
67806062 ATGATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTAAATATTTTAAATTT
Found at i:67806078 original size:24 final size:24
Alignment explanation
Indices: 67806042--67806098 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
67806032 ATTTTTAATT
*
67806042 TTTTTATAATATTTTAAAT-TATGA
1 TTTTTA-AATATTTAAAATATATGA
*
67806066 TTTTTAAATTATTTAAAATATATTA
1 TTTTTAAA-TATTTAAAATATATGA
67806091 TTTTTAAA
1 TTTTTAAA
67806099 GATATGACCT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 2 0.07
24 15 0.52
25 12 0.41
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (24 bp):
TTTTTAAATATTTAAAATATATGA
Found at i:67806095 original size:49 final size:46
Alignment explanation
Indices: 67805985--67806096 Score: 120
Period size: 49 Copynumber: 2.3 Consensus size: 46
67805975 TTTATAAATT
*
67805985 TATTATTAGTTTTATAATATTTTAAATTTATATTTTAAATTTTAAA
1 TATTATTATTTTTATAATATTTTAAATTTATATTTTAAATTTTAAA
*
67806031 TATTTTTAATTTTTTTATAATATTTTAAA-TTATGATTTTTAAATTATTTAAA
1 TATTATT-A--TTTTTATAATATTTTAAATTTAT-A-TTTTAAA-T-TTTAAA
67806083 -ATATATTATTTTTA
1 TAT-TATTATTTTTA
67806097 AAGATATGAC
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
46 6 0.11
47 1 0.02
48 4 0.07
49 24 0.44
50 7 0.13
51 4 0.07
52 9 0.16
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (46 bp):
TATTATTATTTTTATAATATTTTAAATTTATATTTTAAATTTTAAA
Found at i:67806158 original size:11 final size:10
Alignment explanation
Indices: 67806126--67806173 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
67806116 TTATTATTTG
*
67806126 TTTTATAATA
1 TTTTAAAATA
67806136 TTTTAAATATA
1 TTTTAAA-ATA
67806147 TATTTAAAATA
1 T-TTTAAAATA
*
67806158 TTTTTAAA-A
1 TTTTAAAATA
67806167 TTTTAAA
1 TTTTAAA
67806174 TATAATTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 7 0.21
10 12 0.36
11 8 0.24
12 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
TTTTAAAATA
Found at i:67809542 original size:30 final size:30
Alignment explanation
Indices: 67809501--67809602 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
67809491 GTTGCTCTGG
* * *
67809501 GTGAAATGAACTCGAACCGCCTATGTCCGA
1 GTGATATGAACTCGAACCACCAATGTCCGA
*
67809531 GTGATATGAACTCGAACCACCCATGTCCCG-
1 GTGATATGAACTCGAACCACCAATGT-CCGA
*
67809561 GTGATATGAACTTGAACCACCAATGTCCGA
1 GTGATATGAACTCGAACCACCAATGTCCGA
*
67809591 GTGATAGGAACT
1 GTGATATGAACT
67809603 GCTCTACGAC
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
29 3 0.05
30 58 0.91
31 3 0.05
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (30 bp):
GTGATATGAACTCGAACCACCAATGTCCGA
Found at i:67811481 original size:22 final size:24
Alignment explanation
Indices: 67811456--67811506 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
67811446 TTTTTATAAA
* *
67811456 ATTAACCTAAA-AAGT-TTAATAT
1 ATTAAACTAAATAAGTAATAATAT
*
67811478 ATTAAATTAAATAAGTAATAATAT
1 ATTAAACTAAATAAGTAATAATAT
67811502 ATTAA
1 ATTAA
67811507 TATATATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 9 0.38
23 4 0.17
24 11 0.46
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (24 bp):
ATTAAACTAAATAAGTAATAATAT
Found at i:67811571 original size:17 final size:17
Alignment explanation
Indices: 67811549--67811619 Score: 72
Period size: 17 Copynumber: 4.0 Consensus size: 17
67811539 CAACATTTTC
*
67811549 TTTTAACATATTTAAAA
1 TTTTAATATATTTAAAA
*
67811566 TTTTAATATATTTAAATTT
1 TTTTAATATATTTAAA--A
*
67811585 TTTTAAGT-TTTTTAAAA
1 TTTTAA-TATATTTAAAA
67811602 TTTTAAATATATTTAAAA
1 TTTT-AATATATTTAAAA
67811620 CCTTTTTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
17 20 0.45
18 10 0.23
19 13 0.30
20 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (17 bp):
TTTTAATATATTTAAAA
Found at i:67811857 original size:40 final size:40
Alignment explanation
Indices: 67811824--67811908 Score: 143
Period size: 40 Copynumber: 2.1 Consensus size: 40
67811814 AAAAATATAT
*
67811824 ATTAAGTATATAAATTTATGAATGTGTACTAAAATTAAAAA
1 ATTAA-TATATAAATTTATGAATGTGTACTAAAAATAAAAA
*
67811865 ATTAATATATAAATTTATGAATGTGTACTAAAATTAAAAA
1 ATTAATATATAAATTTATGAATGTGTACTAAAAATAAAAA
67811905 ATTA
1 ATTA
67811909 TAACTAACAC
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 39 0.89
41 5 0.11
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.38
Consensus pattern (40 bp):
ATTAATATATAAATTTATGAATGTGTACTAAAAATAAAAA
Found at i:67811898 original size:20 final size:20
Alignment explanation
Indices: 67811835--67811899 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
67811825 TTAAGTATAT
67811835 AAATTTATGAATGTGTACTA
1 AAATTTATGAATGTGTACTA
* ** *
67811855 AAATTAAAAAAT-TAATA-TA
1 AAATTTATGAATGT-GTACTA
67811874 TAAATTTATGAATGTGTACTA
1 -AAATTTATGAATGTGTACTA
67811895 AAATT
1 AAATT
67811900 AAAAAATTAT
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
19 3 0.09
20 27 0.82
21 3 0.09
ACGTcount: A:0.49, C:0.03, G:0.09, T:0.38
Consensus pattern (20 bp):
AAATTTATGAATGTGTACTA
Found at i:67812458 original size:15 final size:15
Alignment explanation
Indices: 67812391--67812462 Score: 54
Period size: 15 Copynumber: 4.4 Consensus size: 15
67812381 AAATTTTTAC
* *
67812391 TTTTTAACATATATA
1 TTTTTAACAAATATT
* *
67812406 TTTTAAATAAATTTATT
1 TTTTTAACAAA--TATT
67812423 TTTTTAACAAATAAATCTT
1 TTTTTAACAAAT--A--TT
67812442 TTTTTAACAAATATT
1 TTTTTAACAAATATT
67812457 TTTTTA
1 TTTTTA
67812463 TTTTTTCTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
15 17 0.38
17 14 0.31
19 14 0.31
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTTTAACAAATATT
Found at i:67812614 original size:9 final size:9
Alignment explanation
Indices: 67812597--67812653 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
67812587 TATAAAACAA
*
67812597 ATTACAAAT
1 ATTAAAAAT
67812606 ATTAAAAAT
1 ATTAAAAAT
*
67812615 ATTATAAAACAA
1 A-T-TAAAA-AT
67812627 ATTAAAAAT
1 ATTAAAAAT
67812636 ATTAAAAAT
1 ATTAAAAAT
67812645 ATTATAAAA
1 ATTA-AAAA
67812654 CTAATAATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
9 23 0.56
10 10 0.24
11 6 0.15
12 2 0.05
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.32
Consensus pattern (9 bp):
ATTAAAAAT
Found at i:67812616 original size:30 final size:30
Alignment explanation
Indices: 67812580--67812654 Score: 141
Period size: 30 Copynumber: 2.5 Consensus size: 30
67812570 ATCATAATTT
*
67812580 AAAATATTATAAAACAAATTACAAATATTA
1 AAAATATTATAAAACAAATTAAAAATATTA
67812610 AAAATATTATAAAACAAATTAAAAATATTA
1 AAAATATTATAAAACAAATTAAAAATATTA
67812640 AAAATATTATAAAAC
1 AAAATATTATAAAAC
67812655 TAATAATAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.29
Consensus pattern (30 bp):
AAAATATTATAAAACAAATTAAAAATATTA
Found at i:67812732 original size:20 final size:20
Alignment explanation
Indices: 67812707--67812781 Score: 123
Period size: 20 Copynumber: 3.6 Consensus size: 20
67812697 TTTTATATTA
67812707 TTAAAAAATATATTTAATAT
1 TTAAAAAATATATTTAATAT
67812727 TTAAAAAATATATTTAATAT
1 TTAAAAAATATATTTAATAT
*
67812747 TTAAAAAATAATATTTAAAATT
1 TTAAAAAAT-ATATTTAATA-T
67812769 TTAAAAAATATAT
1 TTAAAAAATATAT
67812782 ATTATAACAA
Statistics
Matches: 52, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
20 29 0.56
21 13 0.25
22 10 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TTAAAAAATATATTTAATAT
Found at i:67818559 original size:6 final size:6
Alignment explanation
Indices: 67818548--67818602 Score: 51
Period size: 6 Copynumber: 9.3 Consensus size: 6
67818538 TTCTTTTCCA
* * * *
67818548 TTCTTT TTCTTT TTCCTTT TCCTTT TTATTT TTC-TT TTC-TC TACTTT
1 TTCTTT TTCTTT TT-CTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT
67818595 TTCTTT TT
1 TTCTTT TT
67818603 TCGACTTTTC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
5 8 0.21
6 26 0.67
7 5 0.13
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (6 bp):
TTCTTT
Found at i:67818572 original size:19 final size:21
Alignment explanation
Indices: 67818550--67818602 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 21
67818540 CTTTTCCATT
67818550 CTTTTTCTTTTTCCTTT-TC-
1 CTTTTTCTTTTTCCTTTCTCA
* *
67818569 CTTTTTATTTTTCTTTTCTCTA
1 CTTTTTCTTTTTCCTTTCTC-A
67818591 CTTTTTCTTTTT
1 CTTTTTCTTTTT
67818603 TCGACTTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 15 0.54
20 2 0.07
22 11 0.39
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.75
Consensus pattern (21 bp):
CTTTTTCTTTTTCCTTTCTCA
Found at i:67818612 original size:15 final size:16
Alignment explanation
Indices: 67818576--67818611 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
67818566 TTCCTTTTTA
*
67818576 TTTTTCTTTTCTCTAC
1 TTTTTCTTTTCTCGAC
*
67818592 TTTTTCTTTTTTCGAC
1 TTTTTCTTTTCTCGAC
67818608 TTTT
1 TTTT
67818612 CCCTTTTCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.06, C:0.19, G:0.03, T:0.72
Consensus pattern (16 bp):
TTTTTCTTTTCTCGAC
Found at i:67820398 original size:42 final size:41
Alignment explanation
Indices: 67820313--67820406 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 41
67820303 GTTTGAATAC
*
67820313 ATTATAATTTAAATAATATTGTTAATAATTTTTTTATATAT
1 ATTATAATTTAAATAATATTGTTAATAATTTTGTTATATAT
*
67820354 ATTAT-ATTTATAATATATATTGTTAAATTAA-TTTGTTCTA-AT
1 ATTATAATTTA-AATA-ATATTGTT-AA-TAATTTTGTTATATAT
*
67820396 ATTAAAATTTA
1 ATTATAATTTA
67820407 TTTTTTTAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
40 5 0.11
41 9 0.20
42 14 0.31
43 14 0.31
44 3 0.07
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (41 bp):
ATTATAATTTAAATAATATTGTTAATAATTTTGTTATATAT
Found at i:67820819 original size:2 final size:2
Alignment explanation
Indices: 67820814--67820841 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
67820804 AAACCTTGTA
67820814 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67820842 TTATTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67826800 original size:18 final size:17
Alignment explanation
Indices: 67826768--67826803 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
67826758 GCTATGTAAT
67826768 CATCAATGAAAAATAAG
1 CATCAATGAAAAATAAG
*
67826785 CATCATATGAACAATAAG
1 CATCA-ATGAAAAATAAG
67826803 C
1 C
67826804 TAAAGAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.53, C:0.17, G:0.11, T:0.19
Consensus pattern (17 bp):
CATCAATGAAAAATAAG
Found at i:67828715 original size:64 final size:64
Alignment explanation
Indices: 67828614--67828745 Score: 255
Period size: 64 Copynumber: 2.1 Consensus size: 64
67828604 AGCACACCAA
*
67828614 GAAAGGAATTTTGTATTCTTCTTTCGGCTATAAAGGCCACCAAAACATTGTAATATACACATAC
1 GAAAGAAATTTTGTATTCTTCTTTCGGCTATAAAGGCCACCAAAACATTGTAATATACACATAC
67828678 GAAAGAAATTTTGTATTCTTCTTTCGGCTATAAAGGCCACCAAAACATTGTAATATACACATAC
1 GAAAGAAATTTTGTATTCTTCTTTCGGCTATAAAGGCCACCAAAACATTGTAATATACACATAC
67828742 GAAA
1 GAAA
67828746 TATCAAATAC
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (64 bp):
GAAAGAAATTTTGTATTCTTCTTTCGGCTATAAAGGCCACCAAAACATTGTAATATACACATAC
Found at i:67828869 original size:7 final size:7
Alignment explanation
Indices: 67828857--67828886 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
67828847 TGGTATTTTC
67828857 TTTCTAT
1 TTTCTAT
67828864 TTTCTAT
1 TTTCTAT
67828871 TTTCTAT
1 TTTCTAT
67828878 TTTC-AT
1 TTTCTAT
67828884 TTT
1 TTT
67828887 AAAGGTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTCTAT
Found at i:67829164 original size:25 final size:22
Alignment explanation
Indices: 67829112--67829163 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
67829102 CCACCATGAA
* *
67829112 CGGCGGTGTCGTTGTAGGTGAC
1 CGGCGGCGTCGCTGTAGGTGAC
67829134 CGGCGGCGTCGCTGTAGGTGAC
1 CGGCGGCGTCGCTGTAGGTGAC
67829156 CGGCGGCG
1 CGGCGGCG
67829164 GGCGCAGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.08, C:0.25, G:0.48, T:0.19
Consensus pattern (22 bp):
CGGCGGCGTCGCTGTAGGTGAC
Found at i:67829714 original size:28 final size:29
Alignment explanation
Indices: 67829669--67829724 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
67829659 CTTTTTAGTT
*
67829669 ATTTTGCTATTTTTTTATTAAAATTAATTA
1 ATTTTGC-ATTTTATTATTAAAATTAATTA
*
67829699 ATTTTGC-TTTTATTATTAATATTAAT
1 ATTTTGCATTTTATTATTAAAATTAAT
67829725 ATTATTATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 17 0.71
30 7 0.29
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (29 bp):
ATTTTGCATTTTATTATTAAAATTAATTA
Found at i:67829716 original size:3 final size:3
Alignment explanation
Indices: 67829708--67829888 Score: 202
Period size: 3 Copynumber: 60.3 Consensus size: 3
67829698 AATTTTGCTT
* * **
67829708 TTA TTA TTA ATA TTA ATA TTA TTA TTA CCA TTTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
* * * ** * * *
67829754 TTA CTA TTA CTA TTA TTT TTA TTA CCA TTA TTA TTA CTA TTT TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
67829802 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
67829850 TTA TTA CTA TT- GTA TTA CTA TTA TTA TTA TCA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
67829889 ATATATATAT
Statistics
Matches: 145, Mismatches: 31, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
2 1 0.01
3 143 0.99
4 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:67829976 original size:23 final size:23
Alignment explanation
Indices: 67829923--67829976 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
67829913 TACATTTAAG
67829923 TTATTATTATTATATTAAATAAT
1 TTATTATTATTATATTAAATAAT
* * *
67829946 TTAATATTATTTTTTTAGAAT-AT
1 TTATTATTATTATATTA-AATAAT
67829969 TTATTATT
1 TTATTATT
67829977 TGTATTTGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 23 0.88
24 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (23 bp):
TTATTATTATTATATTAAATAAT
Found at i:67830205 original size:19 final size:18
Alignment explanation
Indices: 67830160--67830204 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
67830150 TTTTTTTAAT
67830160 TTATCTTTATTATCATTTA
1 TTAT-TTTATTATCATTTA
*
67830179 TTATTTTACTTATTATTTA
1 TTATTTTA-TTATCATTTA
67830198 TCTATTT
1 T-TATTT
67830205 ATCTATTGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 14 0.61
20 5 0.22
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (18 bp):
TTATTTTATTATCATTTA
Found at i:67838867 original size:49 final size:49
Alignment explanation
Indices: 67838806--67838993 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
67838796 TGAGGTCACG
* * **
67838806 TGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
* * * * *
67838855 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT-GGTCGCA
* * *
67838906 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
*
67838955 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
67838994 GCTTCGGCTA
Statistics
Matches: 118, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 73 0.62
50 4 0.03
51 41 0.35
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCA
Found at i:67838974 original size:100 final size:100
Alignment explanation
Indices: 67838801--67838999 Score: 335
Period size: 100 Copynumber: 2.0 Consensus size: 100
67838791 TATTGTGAGG
** *
67838801 TCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACT
*
67838866 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* *
67838901 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCATGTGTAGTACT
1 TCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACT
*
67838966 AAGTGCAGGCTACTATGCGTACCAGATAGCTTCG
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCG
67839000 GCTACAAGTG
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 92 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:67842020 original size:25 final size:24
Alignment explanation
Indices: 67841984--67842030 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
67841974 TTCCTATAAG
67841984 TTTTCCTTTTTCTCTTCCTCTTAT
1 TTTTCCTTTTTCTCTTCCTCTTAT
* *
67842008 TTTTCTTTCTTTCTCTTCTTCTT
1 TTTTCCTT-TTTCTCTTCCTCTT
67842031 TTCCTTTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (24 bp):
TTTTCCTTTTTCTCTTCCTCTTAT
Found at i:67842032 original size:22 final size:22
Alignment explanation
Indices: 67842002--67842055 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
67841992 TTTCTCTTCC
* *
67842002 TCTTATTTTTCTTTC-TTTCTCT
1 TCTTCTTTTTCTTTCATTT-TAT
*
67842024 TCTTCTTTTCCTTTCATTTTAT
1 TCTTCTTTTTCTTTCATTTTAT
*
67842046 TCTTCCTTTT
1 TCTTCTTTTT
67842056 ATTGCTTTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 23 0.88
23 3 0.12
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.70
Consensus pattern (22 bp):
TCTTCTTTTTCTTTCATTTTAT
Found at i:67843363 original size:22 final size:22
Alignment explanation
Indices: 67843333--67843394 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
67843323 AGGAAACTGC
67843333 ATCTGTATCTAATCTGTTCTGTG
1 ATCT-TATCTAATCTGTTCTGTG
* *
67843356 ATCTTATCTAATATATTCTGTG
1 ATCTTATCTAATCTGTTCTGTG
*
67843378 ATCTTATCTGATCTGTT
1 ATCTTATCTAATCTGTT
67843395 GCTATAATAC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 30 0.88
23 4 0.12
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (22 bp):
ATCTTATCTAATCTGTTCTGTG
Found at i:67850411 original size:22 final size:22
Alignment explanation
Indices: 67850381--67850442 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
67850371 AGGAAACTAG
*
67850381 ATCTGTATCTGATCTGTTCTGCA
1 ATCT-TATCTGATCTATTCTGCA
**
67850404 ATCTTATCTGATCTATTCTGTG
1 ATCTTATCTGATCTATTCTGCA
*
67850426 GTCTTATCTGATCTATT
1 ATCTTATCTGATCTATT
67850443 TCTATAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
22 31 0.89
23 4 0.11
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (22 bp):
ATCTTATCTGATCTATTCTGCA
Found at i:67856535 original size:29 final size:29
Alignment explanation
Indices: 67856493--67856551 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
67856483 TGAAAGTGTG
67856493 GAGAAGATGTTTGAAATTTTCATTGATAT
1 GAGAAGATGTTTGAAATTTTCATTGATAT
67856522 GAGAAGATGTTTGAAATTTTCATTGATAT
1 GAGAAGATGTTTGAAATTTTCATTGATAT
67856551 G
1 G
67856552 GTTATCCTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.03, G:0.22, T:0.41
Consensus pattern (29 bp):
GAGAAGATGTTTGAAATTTTCATTGATAT
Found at i:67862064 original size:12 final size:12
Alignment explanation
Indices: 67862047--67862072 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67862037 TTCAAGGTCC
67862047 AAACTAGTACAT
1 AAACTAGTACAT
67862059 AAACTAGTACAT
1 AAACTAGTACAT
67862071 AA
1 AA
67862073 GACTGTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (12 bp):
AAACTAGTACAT
Found at i:67865610 original size:24 final size:25
Alignment explanation
Indices: 67865550--67865610 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
67865540 AATATTTTAA
*
67865550 TATAAGAATATAAATTTTAAATATT
1 TATAAGAATATAAATATTAAATATT
* * *
67865575 TTTAAGCA-ATAAATATTAATTATT
1 TATAAGAATATAAATATTAAATATT
67865599 TATAAG-ATATAA
1 TATAAGAATATAA
67865611 TTAGAATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 1 0.03
24 23 0.77
25 6 0.20
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.43
Consensus pattern (25 bp):
TATAAGAATATAAATATTAAATATT
Found at i:67865673 original size:24 final size:24
Alignment explanation
Indices: 67865645--67865710 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
67865635 TATAACCATT
67865645 AAATATTTGTAATTAAT-ATTTTAA
1 AAATATTTGTAATTAATGATTTT-A
*
67865669 AAATATTTTTTTAATTAATGATTTTA
1 AAATA--TTTGTAATTAATGATTTTA
* *
67865695 ACACATTTGTAATTAA
1 AAATATTTGTAATTAA
67865711 GCACCAAGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
24 15 0.43
26 15 0.43
27 5 0.14
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (24 bp):
AAATATTTGTAATTAATGATTTTA
Found at i:67868767 original size:28 final size:27
Alignment explanation
Indices: 67868712--67868771 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 27
67868702 TTAAGAAAAA
67868712 AAAG-GAAATAAATAAAAAAAGGTAAAG
1 AAAGAGAAATAAATAAAAAAAGG-AAAG
67868739 AAAGAGAAATAAGATAAAAGAAAGG-AAG
1 AAAGAGAAATAA-ATAAAA-AAAGGAAAG
67868767 AAAGA
1 AAAGA
67868772 ATTAAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
27 4 0.13
28 15 0.50
29 6 0.20
30 5 0.17
ACGTcount: A:0.70, C:0.00, G:0.22, T:0.08
Consensus pattern (27 bp):
AAAGAGAAATAAATAAAAAAAGGAAAG
Found at i:67870922 original size:17 final size:16
Alignment explanation
Indices: 67870900--67870933 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
67870890 GGATATGGCC
67870900 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
67870917 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
67870933 T
1 T
67870934 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:67872883 original size:16 final size:16
Alignment explanation
Indices: 67872859--67872889 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67872849 CTCTTGTGCA
*
67872859 AATTCTGAATTATGGG
1 AATTATGAATTATGGG
67872875 AATTATGAATTATGG
1 AATTATGAATTATGG
67872890 ACTAAATTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.39
Consensus pattern (16 bp):
AATTATGAATTATGGG
Found at i:67873232 original size:20 final size:20
Alignment explanation
Indices: 67873201--67873585 Score: 353
Period size: 20 Copynumber: 19.4 Consensus size: 20
67873191 TATATGTGAA
67873201 TGTACTTCGGTACTCCTGTT
1 TGTACTTCGGTACTCCTGTT
* *
67873221 TGTATTTTGGTAC-CCTGTT
1 TGTACTTCGGTACTCCTGTT
* * *
67873240 TGTGCTTCGGTACTCTTGTA
1 TGTACTTCGGTACTCCTGTT
** *
67873260 TGTACTTCAATACTCCTGTA
1 TGTACTTCGGTACTCCTGTT
* *
67873280 TGTACTTCGATACTCCTATT
1 TGTACTTCGGTACTCCTGTT
* *
67873300 TGTACTTCGATACCCCTGTT
1 TGTACTTCGGTACTCCTGTT
* *
67873320 TGTACTTCGGTACTCTTGTA
1 TGTACTTCGGTACTCCTGTT
*
67873340 TGTACTTCGGTA-TCCCTATT
1 TGTACTTCGGTACT-CCTGTT
* *
67873360 TATACTTCGGTACCCCTGTT
1 TGTACTTCGGTACTCCTGTT
* *
67873380 TGTACTTCGGTACTCTTGTA
1 TGTACTTCGGTACTCCTGTT
* *
67873400 TGTACTTCGGTACTCTTGTA
1 TGTACTTCGGTACTCCTGTT
*
67873420 TGTACTTCGGTACCCCTGTT
1 TGTACTTCGGTACTCCTGTT
* * *
67873440 TGTACTTTGGTACTCTTGTA
1 TGTACTTCGGTACTCCTGTT
* * *
67873460 TGGACTTTGGTACCCCTGTT
1 TGTACTTCGGTACTCCTGTT
* * * *
67873480 TGCACTTTGGTACTCTTGTA
1 TGTACTTCGGTACTCCTGTT
* *
67873500 TGGACTTCGGTACCCCTGTT
1 TGTACTTCGGTACTCCTGTT
* * *
67873520 TGTACTTTGGTACTCTTGTA
1 TGTACTTCGGTACTCCTGTT
* **
67873540 TGTACTTTGGTACTCCAATT
1 TGTACTTCGGTACTCCTGTT
* * *
67873560 TGAACTTCAGTACCCCTGTT
1 TGTACTTCGGTACTCCTGTT
67873580 TG-ACTT
1 TGTACTT
67873586 AGTGTTCCTG
Statistics
Matches: 297, Mismatches: 65, Indels: 7
0.80 0.18 0.02
Matches are distributed among these distances:
19 21 0.07
20 276 0.93
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.44
Consensus pattern (20 bp):
TGTACTTCGGTACTCCTGTT
Found at i:67873294 original size:40 final size:40
Alignment explanation
Indices: 67873201--67873552 Score: 418
Period size: 40 Copynumber: 8.8 Consensus size: 40
67873191 TATATGTGAA
* * * *
67873201 TGTACTTCGGTACTCCTGTTTGTATTTTGGTA-CCCTGTT
1 TGTACTTCGGTACTCTTGTATGTACTTCGGTACCCCTGTT
* ** * *
67873240 TGTGCTTCGGTACTCTTGTATGTACTTCAATACTCCTGTA
1 TGTACTTCGGTACTCTTGTATGTACTTCGGTACCCCTGTT
* * * * *
67873280 TGTACTTCGATACTCCTATTTGTACTTCGATACCCCTGTT
1 TGTACTTCGGTACTCTTGTATGTACTTCGGTACCCCTGTT
* *
67873320 TGTACTTCGGTACTCTTGTATGTACTTCGGTATCCCTATT
1 TGTACTTCGGTACTCTTGTATGTACTTCGGTACCCCTGTT
* * * * * * *
67873360 TATACTTCGGTACCCCTGTTTGTACTTCGGTACTCTTGTA
1 TGTACTTCGGTACTCTTGTATGTACTTCGGTACCCCTGTT
67873400 TGTACTTCGGTACTCTTGTATGTACTTCGGTACCCCTGTT
1 TGTACTTCGGTACTCTTGTATGTACTTCGGTACCCCTGTT
* * *
67873440 TGTACTTTGGTACTCTTGTATGGACTTTGGTACCCCTGTT
1 TGTACTTCGGTACTCTTGTATGTACTTCGGTACCCCTGTT
* * *
67873480 TGCACTTTGGTACTCTTGTATGGACTTCGGTACCCCTGTT
1 TGTACTTCGGTACTCTTGTATGTACTTCGGTACCCCTGTT
* *
67873520 TGTACTTTGGTACTCTTGTATGTACTTTGGTAC
1 TGTACTTCGGTACTCTTGTATGTACTTCGGTAC
67873553 TCCAATTTGA
Statistics
Matches: 264, Mismatches: 48, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
39 25 0.09
40 239 0.91
ACGTcount: A:0.14, C:0.23, G:0.19, T:0.44
Consensus pattern (40 bp):
TGTACTTCGGTACTCTTGTATGTACTTCGGTACCCCTGTT
Found at i:67876367 original size:68 final size:69
Alignment explanation
Indices: 67876256--67876403 Score: 176
Period size: 68 Copynumber: 2.2 Consensus size: 69
67876246 CTAGAAAAAA
* * * * *
67876256 GGAAGAGCATGCTCCTTGTTTCTGCAAACAAGGGAGAATGACCT-CTATTGTGTTTCTTAAAAAT
1 GGAAGAACATGCTCCTTATTTCTGCAAACAAGGGAGAACGACCTACTATTCTATTTCTTAAAAAT
67876320 AGTG
66 AGTG
* * *
67876324 GGAAGAACATGCTCTTTATTTCT-CTAAA-AAGGTGAGAACGACCTATTTTTCTATTTCTTAAAA
1 GGAAGAACATGCTCCTTATTTCTGC-AAACAAGG-GAGAACGACCTACTATTCTATTTCTTAAAA
*
67876387 TTAGTG
64 ATAGTG
67876393 GGAAGAACATG
1 GGAAGAACATG
67876404 TTTTTATATT
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
67 5 0.07
68 33 0.49
69 30 0.44
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (69 bp):
GGAAGAACATGCTCCTTATTTCTGCAAACAAGGGAGAACGACCTACTATTCTATTTCTTAAAAAT
AGTG
Found at i:67876408 original size:35 final size:33
Alignment explanation
Indices: 67876308--67876415 Score: 94
Period size: 34 Copynumber: 3.1 Consensus size: 33
67876298 CTCTATTGTG
* *
67876308 TTTCTTAAAAATAGTGGGAAGAACATGCTCTTTA
1 TTTCTT-AAAATAGTGGGAAGAACATGTTTTTTA
* * *
67876342 TTTCTCTAAAA-AGGTGAGAACGACCTAT-TTTTCTA
1 TTTCT-TAAAATA-GTGGGAA-GAAC-ATGTTTTTTA
67876377 TTTCTTAAAATTAGTGGGAAGAACATGTTTTTATA
1 TTTCTTAAAA-TAGTGGGAAGAACATGTTTTT-TA
67876412 TTTC
1 TTTC
67876416 CTTTAAGAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 15
0.72 0.10 0.19
Matches are distributed among these distances:
33 3 0.05
34 27 0.47
35 25 0.43
36 3 0.05
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (33 bp):
TTTCTTAAAATAGTGGGAAGAACATGTTTTTTA
Found at i:67881298 original size:45 final size:45
Alignment explanation
Indices: 67881237--67881324 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
67881227 GACAATGTTG
* * * *
67881237 TGAGAGACAAATGTTAGAATCTAAGTAAAAGAGACATTTATATTA
1 TGAGAGACAAAGGTTAGAAACTAAGTAAAAAAGAAATTTATATTA
* *
67881282 TGAGAGGCAAAGGTTAGAAACTAATTAAAAAAGAAATTTATAT
1 TGAGAGACAAAGGTTAGAAACTAAGTAAAAAAGAAATTTATAT
67881325 GATCGTTAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.49, C:0.06, G:0.18, T:0.27
Consensus pattern (45 bp):
TGAGAGACAAAGGTTAGAAACTAAGTAAAAAAGAAATTTATATTA
Found at i:67884603 original size:12 final size:12
Alignment explanation
Indices: 67884586--67884615 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
67884576 TTCTTGAATG
67884586 CCAAAACTATCT
1 CCAAAACTATCT
67884598 CCAAAACTATCT
1 CCAAAACTATCT
67884610 CCAAAA
1 CCAAAA
67884616 TCAAAGACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (12 bp):
CCAAAACTATCT
Found at i:67889733 original size:25 final size:25
Alignment explanation
Indices: 67889691--67889739 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
67889681 GTTTATTATT
* *
67889691 ATCATTATGAAGAATTATGTGATTA
1 ATCATTATCAAGAATTATATGATTA
* *
67889716 ATCATTATCATGAGTTATATGATT
1 ATCATTATCAAGAATTATATGATT
67889740 GGTCCTCTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (25 bp):
ATCATTATCAAGAATTATATGATTA
Found at i:67895364 original size:50 final size:50
Alignment explanation
Indices: 67895289--67895726 Score: 545
Period size: 50 Copynumber: 8.9 Consensus size: 50
67895279 TGATGCTAGA
* *
67895289 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATAGAATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * *
67895339 GAGATATGAGAGCTGGTGTAAGACCATGTCTAGGACATAGAATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
*
67895389 GAGATATGAGAGCTAGTGTAAGACAATGTCTGGGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
**
67895439 GAGATATGAGAGCTAGTGTAAGACCATGTCTAAGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* *
67895489 GAGATATGAGAGCTAGTGTAAGAACATGTCTGAGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* *
67895539 GAGATATGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCATCGG-CTT
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * *
67895588 G-G-TATGTG-TC-AGTGTAAGACTATGTCTGGGACAT-GCATCGACAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* * * * * * *
67895633 GATAGATGAGAGCCAGTGTAAGACAATGTCTGGGACATGGCATTGGCTTT
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
67895683 GATG-TAT--GAGCCAGTGTAAGACCATGTCCGGGACATGGCTTCGG
1 GA-GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
67895727 TACCTTACCC
Statistics
Matches: 344, Mismatches: 35, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
44 6 0.02
45 23 0.07
46 2 0.01
47 9 0.03
48 35 0.10
49 26 0.08
50 243 0.71
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:67896911 original size:2 final size:2
Alignment explanation
Indices: 67896904--67896941 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
67896894 CACCTTTGGA
67896904 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67896942 TAAGCTAAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67899561 original size:71 final size:70
Alignment explanation
Indices: 67899477--67899616 Score: 244
Period size: 71 Copynumber: 2.0 Consensus size: 70
67899467 TCAATACATC
67899477 TCAATAGGAGAACATGACATTTCTATCTCTTCTAACTCAATAGATTCAAGGAAAAAATTCTCACT
1 TCAATAGGAGAACATGACATTTCTATCTCTTCTAACTCAATAGATTCAAGG-AAAAATTCTCACT
67899542 ATCATT
65 ATCATT
* * *
67899548 TCAATAGGAGAACATGACGTTTCTATCTCTTCTAATTCAATAGCTTCAAGGAAAAATTCTCACTA
1 TCAATAGGAGAACATGACATTTCTATCTCTTCTAACTCAATAGATTCAAGGAAAAATTCTCACTA
67899613 TCAT
66 TCAT
67899617 ATTTTTTTGG
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
70 18 0.27
71 48 0.73
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (70 bp):
TCAATAGGAGAACATGACATTTCTATCTCTTCTAACTCAATAGATTCAAGGAAAAATTCTCACTA
TCATT
Found at i:67900655 original size:28 final size:28
Alignment explanation
Indices: 67900611--67900664 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
67900601 AGGCTAAGAG
*
67900611 TCAATGAAAATTGCTTATACCAAATTGC
1 TCAATGAAAATTACTTATACCAAATTGC
67900639 TCAATGAAAATTACTTATACCAAATT
1 TCAATGAAAATTACTTATACCAAATT
67900665 TCTTATAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (28 bp):
TCAATGAAAATTACTTATACCAAATTGC
Found at i:67904149 original size:46 final size:45
Alignment explanation
Indices: 67904097--67904266 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 45
67904087 ACAACTTTTA
*
67904097 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCAAG
* * * * *
67904143 GCCGATGCATGTCCCAGACAT-TTTTACACTAGCACTCGTCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCTCAAG
67904188 GCCGATGCCATGTCCCAGACATCGTCTTACACTGGC-TC-TCAT-AATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCGTC-TCAA---G
* * *
67904236 GTCGGTGCATGTCCCAGAGATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
67904267 AGCTCAAACA
Statistics
Matches: 104, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
45 27 0.26
46 49 0.47
47 13 0.12
48 15 0.14
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTCAAG
Found at i:67904233 original size:45 final size:44
Alignment explanation
Indices: 67904003--67904271 Score: 136
Period size: 46 Copynumber: 5.8 Consensus size: 44
67903993 GGTAAGTTGT
* * * *
67904003 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGCATATCCGTGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCT--CATA---ATGC
* ** * * **
67904053 CGATGCCATGTCCCAAACATGGTCTTACACTAACAC-AACTTTTAGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCA-TAAT-GC
* *
67904099 CGATG-CATGTCCCAGACATGTCTTACACTGGCTTACGTC-TCGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGC-T-C-TCAT-AATGC
* * *
67904145 CGATG-CATGTCCCAGACAT-TTTTACACTAGCACTCGTCTTAATGC
1 CGATGCCATGTCCCAGACATGTCTTACACT-G-GCTC-TCATAATGC
*
67904190 CGATGCCATGTCCCAGACATCGTCTTACACTGGCTCTCATAATGTGGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAA--T-GC
* * *
67904238 CGGTG-CATGTCCCAGAGATGTCTTACACTAGCTC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTC
67904272 AAACAAGTGA
Statistics
Matches: 178, Mismatches: 25, Indels: 36
0.74 0.10 0.15
Matches are distributed among these distances:
44 11 0.06
45 39 0.22
46 63 0.35
47 17 0.10
48 14 0.08
50 34 0.19
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (44 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGC
Found at i:67907825 original size:40 final size:40
Alignment explanation
Indices: 67907730--67907947 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
67907720 TGGATGATAA
*
67907730 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
67907771 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67907811 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67907851 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67907891 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
67907930 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67907948 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 12, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
38 15 0.09
39 15 0.09
40 104 0.64
41 24 0.15
42 4 0.02
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67915956 original size:40 final size:40
Alignment explanation
Indices: 67915861--67916064 Score: 281
Period size: 40 Copynumber: 5.1 Consensus size: 40
67915851 TGGATGATAA
*
67915861 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
67915902 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67915942 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67915982 CCGGGCTAAGTCCCGAAGGCATTGGCGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67916022 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
67916061 CCGG
1 CCGG
67916065 TTAAATCCGA
Statistics
Matches: 150, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
38 2 0.01
39 17 0.11
40 103 0.69
41 24 0.16
42 4 0.03
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67917578 original size:9 final size:9
Alignment explanation
Indices: 67917558--67917587 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
67917548 ATATCAATTA
67917558 AAAACTAACC
1 AAAAC-AACC
67917568 AAAACAACC
1 AAAACAACC
67917577 AAAACAACC
1 AAAACAACC
67917586 AA
1 AA
67917588 CACATAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 15 0.75
10 5 0.25
ACGTcount: A:0.67, C:0.30, G:0.00, T:0.03
Consensus pattern (9 bp):
AAAACAACC
Found at i:67918258 original size:43 final size:43
Alignment explanation
Indices: 67918197--67918355 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
67918187 CAATGTCATA
* * * *
67918197 TCCCAGATATGCTCTTACAAGTTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACAAGTAATCACATATCGATGCCAATG
* * * *
67918240 TCCCAGACAGGGTCTTACACGAAATCGA-TTAAT-GATGCCAATG
1 TCCCAGACATGGTCTTACAAGTAATC-ACAT-ATCGATGCCAATG
* *
67918283 TCCCAGACATGGTCTTACATA-TAATCTCA-ATACAATGCCAATG
1 TCCCAGACATGGTCTTACA-AGTAATCACATAT-CGATGCCAATG
*
67918326 TCCCAGACATGGTCTTACATGTAATCACAT
1 TCCCAGACATGGTCTTACAAGTAATCACAT
67918356 CTTGATAACC
Statistics
Matches: 92, Mismatches: 16, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
41 2 0.02
43 87 0.95
44 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACAAGTAATCACATATCGATGCCAATG
Found at i:67920414 original size:20 final size:18
Alignment explanation
Indices: 67920391--67920436 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
67920381 TTTATTTAAT
*
67920391 TTTTTATAATTTTCTATGTA
1 TTTTTATAATTTT-TAT-AA
*
67920411 TTTTTAGAATTTTTATAA
1 TTTTTATAATTTTTATAA
67920429 TTTTTATA
1 TTTTTATA
67920437 CAGAATTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 8 0.35
19 3 0.13
20 12 0.52
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.65
Consensus pattern (18 bp):
TTTTTATAATTTTTATAA
Found at i:67920435 original size:9 final size:9
Alignment explanation
Indices: 67920391--67920436 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
67920381 TTTATTTAAT
67920391 TTTTTATAA
1 TTTTTATAA
*
67920400 TTTTCTATGTA
1 TTTT-TAT-AA
*
67920411 TTTTTAGAA
1 TTTTTATAA
67920420 TTTTTATAA
1 TTTTTATAA
67920429 TTTTTATA
1 TTTTTATA
67920437 CAGAATTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 21 0.68
10 5 0.16
11 5 0.16
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.65
Consensus pattern (9 bp):
TTTTTATAA
Found at i:67920447 original size:20 final size:21
Alignment explanation
Indices: 67920422--67920467 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
67920412 TTTTAGAATT
* *
67920422 TTTATAA-TTTTTATACAGAA
1 TTTATAATTTTTTAAAAAGAA
67920442 TTTATAATTTTTTAAAAAGAA
1 TTTATAATTTTTTAAAAAGAA
67920463 TTTAT
1 TTTAT
67920468 TTTATATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.52
Consensus pattern (21 bp):
TTTATAATTTTTTAAAAAGAA
Found at i:67925135 original size:43 final size:43
Alignment explanation
Indices: 67925074--67925159 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
67925064 ATTCTCAAGG
*
67925074 AGATGAGATTTTTCTTTAAGTTAGACACATGCCTGACACCTAA
1 AGATGAGATTTTTCTTTAAGTCAGACACATGCCTGACACCTAA
*
67925117 AGATGAGATTTTTCTTTAAGTCAGACACATGTCTGACACCTAA
1 AGATGAGATTTTTCTTTAAGTCAGACACATGCCTGACACCTAA
67925160 CGGTATCTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.33
Consensus pattern (43 bp):
AGATGAGATTTTTCTTTAAGTCAGACACATGCCTGACACCTAA
Found at i:67927584 original size:41 final size:41
Alignment explanation
Indices: 67927542--67927753 Score: 162
Period size: 41 Copynumber: 5.2 Consensus size: 41
67927532 AATATATCTA
* * * *
67927542 AATTGCACATACGTGCCCTTGTTTATATTTCGGTAACCCTA
1 AATTGCACATACGTGCCCCTGTTTATACTTCGGTACCCCTG
* * * * * *
67927583 AATTGCACACATGTGCCCCTATTTGTACTTCGATTCCCCTG
1 AATTGCACATACGTGCCCCTGTTTATACTTCGGTACCCCTG
* * * * * * * *
67927624 AATTACACATACTTACTCATGTTTGTACTTTAGCT-CCCCTG
1 AATTGCACATACGTGCCCCTGTTTATAC-TTCGGTACCCCTG
67927665 AATTGCACATACGTGCCCCTG-TTAGTACTTCGGTACCCCTG
1 AATTGCACATACGTGCCCCTGTTTA-TACTTCGGTACCCCTG
* * * * *
67927706 AATTACACATACAT-CCCCTTGTTTGTACTTCAGTACCCTTG
1 AATTGCACATACGTGCCCC-TGTTTATACTTCGGTACCCCTG
67927747 AA-TGCAC
1 AATTGCAC
67927754 TTTTGTACCA
Statistics
Matches: 132, Mismatches: 34, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
40 14 0.11
41 112 0.85
42 6 0.05
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTGTTTATACTTCGGTACCCCTG
Found at i:67927749 original size:82 final size:81
Alignment explanation
Indices: 67927542--67927753 Score: 219
Period size: 82 Copynumber: 2.6 Consensus size: 81
67927532 AATATATCTA
* * * * * * * * *
67927542 AATTGCACATACGTGCCCTTGTTTATATTTCGGTAACCCTAAATTGCACACATGTGCCCCTATTT
1 AATTACACATACATACCCTTGTTTGTACTTCAGT-ACCCTGAATTGCACACACGTGCCCCTATTA
*
67927607 GTACTTCGATTCCCCTG
65 GTACTTCGATACCCCTG
* * * * * * *
67927624 AATTACACATACTTACTCATGTTTGTACTTTAGCTCCCCTGAATTGCACATACGTGCCCCTGTTA
1 AATTACACATACATACCCTTGTTTGTACTTCAG-TACCCTGAATTGCACACACGTGCCCCTATTA
*
67927689 GTACTTCGGTACCCCTG
65 GTACTTCGATACCCCTG
*
67927706 AATTACACATACATCCCCTTGTTTGTACTTCAGTACCCTTGAA-TGCAC
1 AATTACACATACATACCCTTGTTTGTACTTCAGTACCC-TGAATTGCAC
67927754 TTTTGTACCA
Statistics
Matches: 105, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
81 9 0.09
82 95 0.90
83 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (81 bp):
AATTACACATACATACCCTTGTTTGTACTTCAGTACCCTGAATTGCACACACGTGCCCCTATTAG
TACTTCGATACCCCTG
Found at i:67950136 original size:20 final size:20
Alignment explanation
Indices: 67950111--67950148 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
67950101 GAATAGGGGC
67950111 ACATGCCCGTGTGGCCTGAA
1 ACATGCCCGTGTGGCCTGAA
67950131 ACATGCCCGTGTGGCCTG
1 ACATGCCCGTGTGGCCTG
67950149 GCCGTGAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (20 bp):
ACATGCCCGTGTGGCCTGAA
Found at i:67950705 original size:13 final size:13
Alignment explanation
Indices: 67950687--67950722 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
67950677 GAAAATTAGC
67950687 AAATCATACATAT
1 AAATCATACATAT
*
67950700 AAATCATATATAT
1 AAATCATACATAT
67950713 AAATTCATAC
1 AAA-TCATAC
67950723 CAAATATCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATCATACATAT
Found at i:67952316 original size:3 final size:3
Alignment explanation
Indices: 67952308--67952368 Score: 113
Period size: 3 Copynumber: 20.0 Consensus size: 3
67952298 ACCATTTGTA
67952308 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
67952357 AAT AAT AAT AAT
1 AAT AAT AAT AAT
67952369 TATTATTATT
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 54 0.95
4 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:67952373 original size:3 final size:3
Alignment explanation
Indices: 67952367--67952410 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
67952357 AATAATAATA
*
67952367 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
67952411 AAGTATTATC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:67965422 original size:35 final size:35
Alignment explanation
Indices: 67965372--67965485 Score: 131
Period size: 35 Copynumber: 3.3 Consensus size: 35
67965362 CATAGGTAAG
*
67965372 TACATGTAAGCTTATATTGAACTTGTATATTCGGC
1 TACATGTGAGCTTATATTGAACTTGTATATTCGGC
* * * **
67965407 TGCATGTGAGGTTATATTGAA-TTTTAGTATTCGAT
1 TACATGTGAGCTTATATTGAACTTGTA-TATTCGGC
* *
67965442 TACATGTGAGCTTATATTGAACTTGTATACTCGGT
1 TACATGTGAGCTTATATTGAACTTGTATATTCGGC
*
67965477 TATATGTGA
1 TACATGTGA
67965486 AGTTATCTTG
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
34 4 0.06
35 57 0.88
36 4 0.06
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.42
Consensus pattern (35 bp):
TACATGTGAGCTTATATTGAACTTGTATATTCGGC
Found at i:67967219 original size:40 final size:40
Alignment explanation
Indices: 67967174--67967303 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
67967164 CGGAATACAA
67967174 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
67967214 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
67967254 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
67967294 CCGGATATAA
1 CCGGATATAA
67967304 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:67975199 original size:40 final size:40
Alignment explanation
Indices: 67975154--67975283 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
67975144 CGGAATACAA
67975154 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
67975194 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
67975234 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
67975274 CCGGATATAA
1 CCGGATATAA
67975284 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:67977283 original size:20 final size:21
Alignment explanation
Indices: 67977252--67977293 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
67977242 AAAAGTCCCC
67977252 TAGTGTTTCGAGGTTTTTGTT
1 TAGTGTTTCGAGGTTTTTGTT
67977273 TAGTG-TTCGAGGTTTTTGTT
1 TAGTGTTTCGAGGTTTTTGTT
67977293 T
1 T
67977294 TTCGGGGGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.10, C:0.05, G:0.29, T:0.57
Consensus pattern (21 bp):
TAGTGTTTCGAGGTTTTTGTT
Found at i:67982451 original size:24 final size:24
Alignment explanation
Indices: 67982063--67982449 Score: 711
Period size: 24 Copynumber: 16.1 Consensus size: 24
67982053 GCAAAGACCA
67982063 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
67982087 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
67982111 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
67982135 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
67982159 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
67982183 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
67982207 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
67982231 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
67982255 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
67982279 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
67982303 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
67982327 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
67982351 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
67982375 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
67982399 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
67982423 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
67982447 TAT
1 TAT
67982450 AGTCACATTC
Statistics
Matches: 357, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 357 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:67986026 original size:47 final size:44
Alignment explanation
Indices: 67985918--67986040 Score: 142
Period size: 47 Copynumber: 2.7 Consensus size: 44
67985908 GTGTGTGAGA
67985918 TAGTGTAAGACATGTCTGGGACATGCATCGGTCACATTATGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGG--ACATTATGAGAGC
*
67985964 GAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGA-GACGAGGGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGACATT-ATGA-GA--GC
*
67986012 TAGTGTAAGACATGTTTGGGACATGCATC
1 TAGTGTAAGACATGTCTGGGACATGCATC
67986041 AACCTCGAGA
Statistics
Matches: 68, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
45 6 0.09
46 17 0.25
47 27 0.40
48 18 0.26
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (44 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGACATTATGAGAGC
Found at i:67986144 original size:47 final size:48
Alignment explanation
Indices: 67985961--67986182 Score: 158
Period size: 47 Copynumber: 4.7 Consensus size: 48
67985951 ACATTATGAG
** * *
67985961 AGCGAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA-G
1 AGCGAGTGTAAGACCATGTCTGGGACATGGCATCAAC-TCGAGACGATA
* * *
67986009 GGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCAACCTCGAGACG-TA
1 AGCGAGTGTAAGACCATGTCTGGGACATGGCATCAA-CTCGAGACGATA
* * *
67986055 AGCGAGTGCAA-AACATGTCTGGGACAT-GCATCAGA-TACGAGATGAT-
1 AGCGAGTGTAAGACCATGTCTGGGACATGGCATCA-ACT-CGAGACGATA
* * * * *
67986101 AGTC-AATGTAAGACCATGTTTGGGACATGGCATCAACTTGAGA-TATG
1 AG-CGAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGAGACGATA
* * * *
67986148 AGCCAGTGTAAGATCGTGTCTAGGACATGGCATCA
1 AGCGAGTGTAAGACCATGTCTGGGACATGGCATCA
67986183 GCACCTTACC
Statistics
Matches: 139, Mismatches: 23, Indels: 25
0.74 0.12 0.13
Matches are distributed among these distances:
45 2 0.01
46 55 0.40
47 64 0.46
48 18 0.13
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (48 bp):
AGCGAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGAGACGATA
Found at i:67993360 original size:8 final size:8
Alignment explanation
Indices: 67993349--67993393 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
67993339 TTTAAGAAAT
67993349 TAATATAA
1 TAATATAA
*
67993357 TAATATAT
1 TAATATAA
67993365 TAATATAATA
1 TAATAT-A-A
67993375 TAATATAA
1 TAATATAA
*
67993383 TAATAAAA
1 TAATATAA
67993391 TAA
1 TAA
67993394 AGTATATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 24 0.75
9 2 0.06
10 6 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TAATATAA
Found at i:67993368 original size:16 final size:16
Alignment explanation
Indices: 67993347--67993393 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
67993337 TATTTAAGAA
67993347 ATTAATATAATAATAT
1 ATTAATATAATAATAT
67993363 ATTAATATAATATAATAT
1 ATTAATAT-A-ATAATAT
* *
67993381 AATAATAAAATAA
1 ATTAATATAATAA
67993394 AGTATATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 12 0.44
17 2 0.07
18 13 0.48
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTAATATAATAATAT
Found at i:67993373 original size:5 final size:5
Alignment explanation
Indices: 67993349--67993412 Score: 53
Period size: 5 Copynumber: 12.6 Consensus size: 5
67993339 TTTAAGAAAT
*
67993349 TAATA TAATA -ATATA TTAATA TAATA TAATA TAATAA TAAAA TAA-A
1 TAATA TAATA TA-ATA -TAATA TAATA TAATA TAAT-A TAATA TAATA
*
67993395 GT-ATA TAATA AAATA TAA
1 -TAATA TAATA TAATA TAA
67993413 AAGAAACAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
4 4 0.08
5 37 0.76
6 7 0.14
7 1 0.02
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (5 bp):
TAATA
Found at i:67993485 original size:12 final size:12
Alignment explanation
Indices: 67993468--67993502 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
67993458 ACGAAATAGG
67993468 AGAAAGAAAAAC
1 AGAAAGAAAAAC
*
67993480 AGAAAGAAAAAG
1 AGAAAGAAAAAC
67993492 AGAAAGAAAAA
1 AGAAAGAAAAA
67993503 AAAAAGGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.77, C:0.03, G:0.20, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAAC
Found at i:67993512 original size:24 final size:24
Alignment explanation
Indices: 67993467--67993514 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
67993457 AACGAAATAG
*
67993467 GAGAAAGAAAAACAGAAAGAAAAA
1 GAGAAAGAAAAACAAAAAGAAAAA
67993491 GAGAAAGAAAAA-AAAAAGGAAAAA
1 GAGAAAGAAAAACAAAAA-GAAAAA
67993515 TTAGGGATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.77, C:0.02, G:0.21, T:0.00
Consensus pattern (24 bp):
GAGAAAGAAAAACAAAAAGAAAAA
Found at i:68007012 original size:6 final size:6
Alignment explanation
Indices: 68006987--68007073 Score: 97
Period size: 6 Copynumber: 14.7 Consensus size: 6
68006977 CTCCTCCTAT
* * *
68006987 TTTTTA TTATTTA TTCTTA TTTTTA TTTTTA TTTTTA TTTTTC TTTTAA
1 TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* * *
68007036 TTTTTA TTTTTA -TTTCA ATTTTA TTATTA -TTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
68007074 GAAAGACATA
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
5 8 0.12
6 53 0.79
7 6 0.09
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:68012263 original size:49 final size:48
Alignment explanation
Indices: 68012206--68012604 Score: 628
Period size: 47 Copynumber: 8.4 Consensus size: 48
68012196 ATGTATGAGA
68012206 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G
68012255 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G
68012304 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGG
68012351 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-G
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGG
68012398 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G
68012447 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGG
* * *
68012494 TGTATATATGTGATAAGCCCGAATGGCCAATGTGATGAATGTGAAA-G
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGG
* * * * * * * *
68012541 TGTATATATGTGATAGGGCCGAGTGGCCAACGAGATGGATGTGGAA-G
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGG
*
68012588 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
68012605 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 12, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
47 188 0.56
48 10 0.03
49 136 0.41
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (48 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGG
Found at i:68012266 original size:27 final size:27
Alignment explanation
Indices: 68012235--68012317 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
68012225 CTAATGGCCG
68012235 ATGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
* *** ***
68012262 ATGTGAT-AAGGCCTAA-TG-GCCGA-
1 ATGTGATGAATGTGAAAGTGTGTATAT
68012285 -TGTGATGAATGTGAAAGTGTGTATAT
1 ATGTGATGAATGTGAAAGTGTGTATAT
68012311 ATGTGAT
1 ATGTGAT
68012318 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
22 6 0.16
23 5 0.14
24 4 0.11
25 4 0.11
26 5 0.14
27 13 0.35
ACGTcount: A:0.31, C:0.05, G:0.30, T:0.34
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGTGTATAT
Found at i:68012466 original size:143 final size:143
Alignment explanation
Indices: 68012206--68012604 Score: 658
Period size: 143 Copynumber: 2.8 Consensus size: 143
68012196 ATGTATGAGA
68012206 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGATAA
68012271 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATG
64 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATG
68012336 TGATGAATGTGAAGG
129 TGATGAATGTGAAGG
68012351 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
68012416 CCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
68012481 ATGAATGTGAAGG
131 ATGAATGTGAAGG
* * * *
68012494 TGTATATATGTGATAAGCCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* * * * * * * *
68012559 CCGAGTGGCCAACGAGATGGATGTGGAA--GTGTATAAATGTGATAAG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAG
68012605 TCCCGAAGGG
Statistics
Matches: 242, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
141 17 0.07
143 179 0.74
145 46 0.19
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (143 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAGG
Found at i:68014488 original size:13 final size:13
Alignment explanation
Indices: 68014472--68014496 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68014462 TTAAACCAGT
68014472 TAATTAGTTTAAA
1 TAATTAGTTTAAA
68014485 TAATTAGTTTAA
1 TAATTAGTTTAA
68014497 TAAACAAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:68014771 original size:26 final size:25
Alignment explanation
Indices: 68014735--68014815 Score: 83
Period size: 26 Copynumber: 3.2 Consensus size: 25
68014725 GATGTTACAC
68014735 TCTTGATTAAAGGCTCTTCGTGAGCT
1 TCTTGATTAAAGGCTCTT-GTGAGCT
* * *
68014761 TCTTGATTAAAAGTTCTTTGTGAACT
1 TCTTGATTAAAGGCTC-TTGTGAGCT
* * *
68014787 TCCTGATT-ATGGCTCTTATGAGCT
1 TCTTGATTAAAGGCTCTTGTGAGCT
68014811 TCTTG
1 TCTTG
68014816 TTATATAGCC
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
24 11 0.25
25 4 0.09
26 27 0.61
27 2 0.05
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (25 bp):
TCTTGATTAAAGGCTCTTGTGAGCT
Found at i:68020033 original size:23 final size:23
Alignment explanation
Indices: 68019977--68020094 Score: 145
Period size: 22 Copynumber: 5.3 Consensus size: 23
68019967 TCATGGTCGA
**
68019977 TAAGCTCCT-TTGAGCTG-AACAA
1 TAAGCT-CTATTGAGCTGAAACGG
* *
68019999 TAAACTCTATTGAGCTGAAATGG
1 TAAGCTCTATTGAGCTGAAACGG
68020022 TAAGCTCTATTGAGCTGAAACGG
1 TAAGCTCTATTGAGCTGAAACGG
*
68020045 TAAGCTCTATTGAGCTG-AACAG
1 TAAGCTCTATTGAGCTGAAACGG
*
68020067 TAAGCTCTATTGAGCT-AAACGA
1 TAAGCTCTATTGAGCTGAAACGG
68020089 TAAGCT
1 TAAGCT
68020095 ACAATGAGCT
Statistics
Matches: 84, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
21 2 0.02
22 42 0.50
23 40 0.48
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (23 bp):
TAAGCTCTATTGAGCTGAAACGG
Found at i:68020037 original size:45 final size:44
Alignment explanation
Indices: 68019977--68020119 Score: 157
Period size: 45 Copynumber: 3.2 Consensus size: 44
68019967 TCATGGTCGA
* *
68019977 TAAGCTCCT-TTGAGCTGAACAATAAACTCTATTGAGCTGAAATGG
1 TAAGCT-CTATTGAGCTGAACGATAAGCTCTATTGAGCTGAAAT-G
*
68020022 TAAGCTCTATTGAGCTGAAACGGTAAGCTCTATTGAGCTGAACA-G
1 TAAGCTCTATTGAGCTG-AACGATAAGCTCTATTGAGCTGAA-ATG
* * *
68020067 TAAGCTCTATTGAGCTAAACGATAAGCTAC-AATGAGCTAAAATAG
1 TAAGCTCTATTGAGCTGAACGATAAGCT-CTATTGAGCTGAAAT-G
68020112 TAAGCTCT
1 TAAGCTCT
68020120 TACGAGCTAT
Statistics
Matches: 85, Mismatches: 7, Indels: 12
0.82 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 21 0.25
45 41 0.48
46 21 0.25
47 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (44 bp):
TAAGCTCTATTGAGCTGAACGATAAGCTCTATTGAGCTGAAATG
Found at i:68026099 original size:40 final size:39
Alignment explanation
Indices: 68025934--68026117 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
68025924 AAATTGAATG
* * *
68025934 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
68025974 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
68026014 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
68026054 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
68026093 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
68026118 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:68026142 original size:80 final size:81
Alignment explanation
Indices: 68025974--68026162 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
68025964 GCTGGAAATT
* * * *
68025974 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
68026039 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
68026055 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
68026118 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
68026134 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
68026163 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Done.