Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 226 of 335
Found at i:68034216 original size:40 final size:39
Alignment explanation
Indices: 68034051--68034234 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
68034041 AAATTGAATG
* * *
68034051 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
68034091 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
68034131 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
68034171 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
68034210 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
68034235 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:68034259 original size:80 final size:81
Alignment explanation
Indices: 68034091--68034279 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
68034081 GCTGGAAATT
* * * *
68034091 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
68034156 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
68034172 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
68034235 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
68034251 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
68034280 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:68037709 original size:30 final size:29
Alignment explanation
Indices: 68037615--68037716 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
68037605 TATAGTGAAT
* * *
68037615 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
68037644 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
68037672 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
68037702 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
68037717 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:68045554 original size:30 final size:29
Alignment explanation
Indices: 68045460--68045561 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
68045450 TATAGTGAAT
* * *
68045460 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
68045489 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
68045517 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
68045547 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
68045562 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:68056284 original size:28 final size:28
Alignment explanation
Indices: 68056215--68056315 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
68056205 GACAAGATTG
* * * *
68056215 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
68056245 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
68056273 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
68056302 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
68056316 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:68064753 original size:42 final size:42
Alignment explanation
Indices: 68064691--68064779 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
68064681 TCCTAATTAG
*
68064691 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
*
68064733 GAAAATAGTTCCCTTCTTCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
*
68064775 TAAAA
1 GAAAA
68064780 ATATTCCTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.29
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
Found at i:68064826 original size:19 final size:18
Alignment explanation
Indices: 68064804--68064843 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
68064794 TGAATAAAAC
68064804 TTATCTACCAAAATAAGAT
1 TTATCTACCAAAATAA-AT
*
68064823 TTATCTACCTAAATAAAT
1 TTATCTACCAAAATAAAT
68064841 TTA
1 TTA
68064844 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.38
Consensus pattern (18 bp):
TTATCTACCAAAATAAAT
Found at i:68065435 original size:18 final size:18
Alignment explanation
Indices: 68065385--68065424 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
68065375 TTTGCAAACT
68065385 ATTAGTTATTC-GATAACA
1 ATTAGTTATTCAG-TAACA
68065403 ATTAGTTATTCAGTAACA
1 ATTAGTTATTCAGTAACA
68065421 ATTA
1 ATTA
68065425 TTCGTTCAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (18 bp):
ATTAGTTATTCAGTAACA
Found at i:68065696 original size:6 final size:6
Alignment explanation
Indices: 68065687--68065723 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
68065677 GGAATACACC
* *
68065687 GTAACG GTAACA GTAATA GTAACA GTAACA GTAACA G
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA G
68065724 AAGGGTACAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.46, C:0.14, G:0.22, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:68072638 original size:18 final size:18
Alignment explanation
Indices: 68072617--68072654 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
68072607 AGTCATTTGA
68072617 TAACAATTAGTTATTCAG
1 TAACAATTAGTTATTCAG
* *
68072635 TAACAATTATTTGTTCAG
1 TAACAATTAGTTATTCAG
68072653 TA
1 TA
68072655 GTAATCCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (18 bp):
TAACAATTAGTTATTCAG
Found at i:68072932 original size:18 final size:19
Alignment explanation
Indices: 68072906--68072942 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
68072896 GAATACACCA
*
68072906 TAACGGTAGCAGTA-ACAG
1 TAACAGTAGCAGTACACAG
68072924 TAACAGTAGCAGTACACAG
1 TAACAGTAGCAGTACACAG
68072943 AGTACCTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.41, C:0.19, G:0.24, T:0.16
Consensus pattern (19 bp):
TAACAGTAGCAGTACACAG
Found at i:68076868 original size:25 final size:25
Alignment explanation
Indices: 68076839--68076886 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
68076829 TTATAATATG
* * *
68076839 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68076864 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68076887 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68076955 original size:20 final size:20
Alignment explanation
Indices: 68076930--68076988 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
68076920 TAAATATGGT
68076930 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
68076950 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
68076970 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
68076989 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:68077108 original size:47 final size:48
Alignment explanation
Indices: 68077039--68077157 Score: 172
Period size: 47 Copynumber: 2.5 Consensus size: 48
68077029 GAGGAAGTGA
68077039 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTAT-GCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTT-TGGCCCCAGTTATT
*
68077086 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
*
68077134 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
68077158 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 1 0.02
47 43 0.65
48 11 0.17
49 11 0.17
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCGAAAGGGCTTTGGCCCCAGTTATT
Found at i:68077133 original size:24 final size:24
Alignment explanation
Indices: 68077039--68077157 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
68077029 GAGGAAGTGA
*
68077039 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
68077063 GAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
68077086 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
68077110 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
68077134 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
68077158 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
23 22 0.26
24 51 0.61
25 11 0.13
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:68077383 original size:31 final size:31
Alignment explanation
Indices: 68077348--68077411 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
68077338 CGTTTACAGT
68077348 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
68077379 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
68077410 AA
1 AA
68077412 CATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:68077417 original size:38 final size:38
Alignment explanation
Indices: 68077365--68077472 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
68077355 TCGGCCCAGT
68077365 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
68077403 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
* *
68077441 GATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
68077473 GCATGATTGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
38 52 0.80
39 13 0.20
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.23
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Found at i:68081484 original size:137 final size:137
Alignment explanation
Indices: 68081238--68081524 Score: 538
Period size: 137 Copynumber: 2.1 Consensus size: 137
68081228 CATTGGGCCT
**
68081238 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
68081303 AGCCCTTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
68081368 CATATGC
131 CATATGC
68081375 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
68081440 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCTATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
68081505 CATATGC
131 CATATGC
68081512 AAGCCCATTTGGG
1 AAGCCCATTTGGG
68081525 GAGACTACTC
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:68081801 original size:26 final size:26
Alignment explanation
Indices: 68081772--68081824 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
68081762 TCAAACATGC
68081772 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
68081798 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
68081824 A
1 A
68081825 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:68083345 original size:26 final size:26
Alignment explanation
Indices: 68083309--68083392 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
68083299 CATGAAATTC
68083309 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
68083335 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
68083361 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
68083387 TTATCA
1 TTATCA
68083393 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:68086857 original size:14 final size:14
Alignment explanation
Indices: 68086838--68086866 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
68086828 AAAATGTGGT
68086838 CCGATTGAACCGAA
1 CCGATTGAACCGAA
68086852 CCGATTGAACCGAA
1 CCGATTGAACCGAA
68086866 C
1 C
68086867 TGGCCAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.31, G:0.21, T:0.14
Consensus pattern (14 bp):
CCGATTGAACCGAA
Found at i:68088124 original size:27 final size:26
Alignment explanation
Indices: 68088053--68088130 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 26
68088043 ATGCCCCCAG
*
68088053 TTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* *
68088080 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
*
68088107 TTGTAAAATTATCGAAATACCCTC
1 TTGTAAAATTA-CCAAATACCCTC
68088131 AGTACAAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 38 0.88
28 5 0.12
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:68088168 original size:27 final size:27
Alignment explanation
Indices: 68088133--68088398 Score: 329
Period size: 27 Copynumber: 9.9 Consensus size: 27
68088123 ATACCCTCAG
**
68088133 TACAAAATTATTATTTTACCCTCGATT
1 TACAAAATTACCATTTTACCCTCGATT
*
68088160 TACAAAATTACTATTTTACCCTCGATT
1 TACAAAATTACCATTTTACCCTCGATT
* * *
68088187 TACAGAATTACCCTCTTACCCTCGATT
1 TACAAAATTACCATTTTACCCTCGATT
68088214 TACAAAATTA-C-TGTTTACCCTCGATT
1 TACAAAATTACCAT-TTTACCCTCGATT
* * *
68088240 TACAGAATTACCGTTTTACTCTCGATT
1 TACAAAATTACCATTTTACCCTCGATT
**
68088267 TACAAAATTATTATTTTACCCTCGATT
1 TACAAAATTACCATTTTACCCTCGATT
* *
68088294 TATAGAATTACCATTTTACCCTCGATT
1 TACAAAATTACCATTTTACCCTCGATT
*
68088321 TATAAAATTACCATTTTACCCTCGATT
1 TACAAAATTACCATTTTACCCTCGATT
* * *
68088348 TACAGAATTACCGTTTCACCCTCGATT
1 TACAAAATTACCATTTTACCCTCGATT
* **
68088375 TATAAAATTACTGTTTTACCCTCG
1 TACAAAATTACCATTTTACCCTCG
68088399 TAGAGCCCAT
Statistics
Matches: 209, Mismatches: 27, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
25 1 0.00
26 22 0.11
27 185 0.89
28 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACAAAATTACCATTTTACCCTCGATT
Found at i:68088212 original size:54 final size:54
Alignment explanation
Indices: 68088146--68088398 Score: 391
Period size: 54 Copynumber: 4.7 Consensus size: 54
68088136 AAAATTATTA
*
68088146 TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCC
1 TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCG
* *
68088200 TCTTACCCTCGATTTACAAAATTACT-GTTTACCCTCGATTTACAGAATTACCG
1 TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCG
* * * *
68088253 TTTTACTCTCGATTTACAAAATTATTATTTTACCCTCGATTTATAGAATTACCA
1 TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCG
* *
68088307 TTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCG
1 TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCG
* * *
68088361 TTTCACCCTCGATTTATAAAATTACTGTTTTACCCTCG
1 TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCG
68088399 TAGAGCCCAT
Statistics
Matches: 180, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
53 48 0.27
54 132 0.73
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (54 bp):
TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCG
Found at i:68088285 original size:107 final size:108
Alignment explanation
Indices: 68088146--68088398 Score: 402
Period size: 107 Copynumber: 2.4 Consensus size: 108
68088136 AAAATTATTA
*
68088146 TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCCTCTTACCCTCG
1 TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATCTTACCCTCG
68088211 ATTTACAAAATTA-C-TGTTTACCCTCGATTTACAGAATTACCG
66 ATTTACAAAATTACCAT-TTTACCCTCGATTTACAGAATTACCG
* * * *
68088253 TTTTACTCTCGATTTACAAAATTATTATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCG
1 TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATCTTACCCTCG
*
68088318 ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCG
66 ATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCG
* * *
68088361 TTTCACCCTCGATTTATAAAATTACTGTTTTACCCTCG
1 TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCG
68088399 TAGAGCCCAT
Statistics
Matches: 133, Mismatches: 11, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
107 72 0.54
108 60 0.45
109 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (108 bp):
TTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATCTTACCCTCG
ATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCG
Found at i:68088658 original size:20 final size:21
Alignment explanation
Indices: 68088633--68088715 Score: 101
Period size: 20 Copynumber: 4.3 Consensus size: 21
68088623 GATATGATAT
*
68088633 ACATGAT-TGATATGATATGC
1 ACATGATATGATATGAAATGC
68088653 ACATGATATG---T--AATGC
1 ACATGATATGATATGAAATGC
68088669 ACATGATATG-TATGAAATGC
1 ACATGATATGATATGAAATGC
68088689 ACATGATATG-TATGAAATGC
1 ACATGATATGATATGAAATGC
68088709 ACATGAT
1 ACATGAT
68088716 GTATTCATAA
Statistics
Matches: 57, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
16 14 0.25
18 2 0.04
20 39 0.68
21 2 0.04
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (21 bp):
ACATGATATGATATGAAATGC
Found at i:68088661 original size:16 final size:16
Alignment explanation
Indices: 68088640--68088700 Score: 70
Period size: 16 Copynumber: 3.6 Consensus size: 16
68088630 TATACATGAT
68088640 TGATATG-ATATGCACA
1 TGATATGTA-ATGCACA
68088656 TGATATGTAATGCACA
1 TGATATGTAATGCACA
68088672 TGATATGTATGAAATGCACA
1 TGATATG--T--AATGCACA
68088692 TGATATGTA
1 TGATATGTA
68088701 TGAAATGCAC
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
16 22 0.55
17 1 0.03
18 2 0.05
20 15 0.38
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (16 bp):
TGATATGTAATGCACA
Found at i:68088822 original size:52 final size:51
Alignment explanation
Indices: 68088765--68088881 Score: 191
Period size: 52 Copynumber: 2.3 Consensus size: 51
68088755 GAGGAAGTGC
*
68088765 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGTTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
* *
68088817 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCTAGTTTGCCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
68088868 AAAAGGGCTT-TGCC
1 AAAAGGGCTTATGCC
68088882 TAGTTATTAA
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
50 4 0.06
51 23 0.37
52 35 0.56
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:68088862 original size:25 final size:26
Alignment explanation
Indices: 68088765--68088881 Score: 157
Period size: 26 Copynumber: 4.6 Consensus size: 26
68088755 GAGGAAGTGC
68088765 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
68088791 AAAAGGGTTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
68088817 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* ***
68088843 AAAAGGGCTT-TGCCCTAGTTTGCCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
68088868 AAAAGGGCTT-TGCC
1 AAAAGGGCTTATGCC
68088882 TAGTTATTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 25 0.31
26 56 0.69
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:68089112 original size:42 final size:42
Alignment explanation
Indices: 68089032--68089123 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
68089022 TAGTCTCCCA
* ** *
68089032 AAATGGGCTTGCATATATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATATGATATTG
*
68089074 AAATGGGCTTGCATACA-TCTATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTC-ATTGACATTACATATGATATTG
68089116 AAATGGGC
1 AAATGGGC
68089124 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 2 0.05
42 42 0.95
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATATGATATTG
Found at i:68089185 original size:31 final size:30
Alignment explanation
Indices: 68089147--68089221 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 30
68089137 CGTTTACAGT
68089147 AAAGGCTTCGGCTCAGTGAAATGATTTATGA
1 AAAGGCTTCGGC-CAGTGAAATGATTTATGA
*
68089178 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCC-AGTGAAATGATTTATGA
68089209 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
68089222 CAGTAACCAT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
30 1 0.02
31 41 0.98
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGAAATGATTTATGA
Found at i:68091583 original size:27 final size:27
Alignment explanation
Indices: 68091466--68091589 Score: 103
Period size: 27 Copynumber: 4.6 Consensus size: 27
68091456 AGAATACTTT
*
68091466 AGTTTACCAAATTACTGAAATACCCCC
1 AGTTTACAAAATTACTGAAATACCCCC
*
68091493 AGTTGT--AAAATTAC-CAAAGTACCCCC
1 AGTT-TACAAAATTACTGAAA-TACCCCC
* ** * *
68091519 AGTTTATAAAATTACCCAAATATCCTC
1 AGTTTACAAAATTACTGAAATACCCCC
** *
68091546 -GATTTGTAAAATTACTGAAATACCCTC
1 AG-TTTACAAAATTACTGAAATACCCCC
68091573 AGTTTACAAAATTACTG
1 AGTTTACAAAATTACTG
68091590 TTTTAGCCTC
Statistics
Matches: 80, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
25 4 0.05
26 19 0.24
27 51 0.64
28 6 0.08
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (27 bp):
AGTTTACAAAATTACTGAAATACCCCC
Found at i:68091599 original size:27 final size:27
Alignment explanation
Indices: 68091542--68091695 Score: 175
Period size: 27 Copynumber: 5.7 Consensus size: 27
68091532 ACCCAAATAT
** ***
68091542 CCTCGATTTGTAAAATTACTGAAATAC
1 CCTCGATTTACAAAATTACTGTTTTAC
*
68091569 CCTC-AGTTTACAAAATTACTGTTTTAG
1 CCTCGA-TTTACAAAATTACTGTTTTAC
*
68091596 CCTCGATTTACAGAATTACTGTTTTAC
1 CCTCGATTTACAAAATTACTGTTTTAC
* * ** *
68091623 CCTCAATTGACAAAATTACCCTCTTAC
1 CCTCGATTTACAAAATTACTGTTTTAC
68091650 CCTCGATTTACAAAATTACTGTTTTAC
1 CCTCGATTTACAAAATTACTGTTTTAC
*
68091677 CCTCGATTTACAGAATTAC
1 CCTCGATTTACAAAATTAC
68091696 CCTCTTACCC
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 1 0.01
27 103 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.36
Consensus pattern (27 bp):
CCTCGATTTACAAAATTACTGTTTTAC
Found at i:68093573 original size:40 final size:40
Alignment explanation
Indices: 68093492--68093673 Score: 280
Period size: 40 Copynumber: 4.6 Consensus size: 40
68093482 TATTCGGATG
*
68093492 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
*
68093533 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGGTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
68093573 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
68093613 ATAT-CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
68093652 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
68093674 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
39 48 0.36
40 60 0.45
41 24 0.18
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:68093654 original size:79 final size:81
Alignment explanation
Indices: 68093492--68093673 Score: 284
Period size: 79 Copynumber: 2.3 Consensus size: 81
68093482 TATTCGGATG
* *
68093492 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC
68093557 ATTTGTGGTAGTGACT
66 ATTTGTGGTAGTGACT
68093573 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACTATAT-CGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC
68093636 ATTTGTGCG-AGTTG-CT
66 ATTTGTG-GTAG-TGACT
*
68093652 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
68093674 TACTTGGGTT
Statistics
Matches: 96, Mismatches: 3, Indels: 7
0.91 0.03 0.07
Matches are distributed among these distances:
78 15 0.16
79 35 0.36
80 22 0.23
81 24 0.25
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGC
ATTTGTGGTAGTGACT
Found at i:68095110 original size:27 final size:27
Alignment explanation
Indices: 68095074--68095241 Score: 209
Period size: 27 Copynumber: 6.4 Consensus size: 27
68095064 GGGGCGTTAC
* *
68095074 ACCCTCGATTTAAAAAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACCGTTTT
*
68095101 ACCCTCGATTTACAGAATTACCGTTTT
1 ACCCTCGATTTACAAAATTACCGTTTT
* *
68095128 ACCCTCGATTTACAGAATTACTGTTTT
1 ACCCTCGATTTACAAAATTACCGTTTT
* *
68095155 ACCCTCGATTTACAGAATTATCGTTTT
1 ACCCTCGATTTACAAAATTACCGTTTT
* * *
68095182 ACCCTTGATTTATAAAATTACCATTTT
1 ACCCTCGATTTACAAAATTACCGTTTT
*
68095209 A--C-AG-TTTACAAAATTACCGTTTT
1 ACCCTCGATTTACAAAATTACCGTTTT
68095232 ACCCTCGATT
1 ACCCTCGATT
68095242 GTGAAATTAC
Statistics
Matches: 122, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
23 18 0.15
24 1 0.01
25 2 0.02
26 1 0.01
27 100 0.82
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
ACCCTCGATTTACAAAATTACCGTTTT
Found at i:68095221 original size:23 final size:23
Alignment explanation
Indices: 68095190--68095233 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
68095180 TTACCCTTGA
*
68095190 TTTATAAAATTACCATTTTACAG
1 TTTACAAAATTACCATTTTACAG
*
68095213 TTTACAAAATTACCGTTTTAC
1 TTTACAAAATTACCATTTTAC
68095234 CCTCGATTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.43
Consensus pattern (23 bp):
TTTACAAAATTACCATTTTACAG
Found at i:68095432 original size:27 final size:27
Alignment explanation
Indices: 68095299--68095428 Score: 109
Period size: 27 Copynumber: 4.7 Consensus size: 27
68095289 CTAGGTTGAG
* ** *
68095299 AAATTAATGAAATACCCTCAATTTATA
1 AAATTACTGAAATACCCTTGATTTACA
**
68095326 AAATTACCAAAATACCCTTGATTTACA
1 AAATTACTGAAATACCCTTGATTTACA
* * **
68095353 AAATTACAGAAATACCTTTGACTTTTTA
1 AAATTACTGAAATACCCTTGA-TTTACA
* * *
68095381 AGAATTA-TAGGAATACCATTGGTTTACA
1 A-AATTACT-GAAATACCCTTGATTTACA
68095409 AAATTACTGAAATACCCTTG
1 AAATTACTGAAATACCCTTG
68095429 GTTTGTAGAT
Statistics
Matches: 80, Mismatches: 19, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
27 54 0.68
28 11 0.14
29 15 0.19
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTTGATTTACA
Found at i:68096282 original size:20 final size:20
Alignment explanation
Indices: 68096247--68096319 Score: 61
Period size: 18 Copynumber: 4.0 Consensus size: 20
68096237 TGATACGTGG
68096247 GATATGATAT--ACATGATT
1 GATATGATATGCACATGATT
68096265 GATATGATATGCACATGA-T
1 GATATGATATGCACATGATT
*
68096284 -ATGT-A-ATGCACATGATAT
1 GATATGATATGCACATGAT-T
* *
68096302 G-TATGAAATGTACATGAT
1 GATATGATATGCACATGAT
68096320 GTATTCATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
16 10 0.22
17 1 0.02
18 16 0.36
19 2 0.04
20 16 0.36
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.34
Consensus pattern (20 bp):
GATATGATATGCACATGATT
Found at i:68096285 original size:16 final size:15
Alignment explanation
Indices: 68096264--68096306 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 15
68096254 TATACATGAT
68096264 TGATATGATATGCACA
1 TGATATG-TATGCACA
68096280 TGATATGTAATGCACA
1 TGATATGT-ATGCACA
68096296 TGATATGTATG
1 TGATATGTATG
68096307 AAATGTACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.15
16 22 0.85
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (15 bp):
TGATATGTATGCACA
Found at i:68096492 original size:25 final size:26
Alignment explanation
Indices: 68096369--68096517 Score: 230
Period size: 26 Copynumber: 5.8 Consensus size: 26
68096359 GAGGAAGTGT
* **
68096369 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
68096395 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
68096421 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
68096447 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
68096473 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
68096498 AAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTATGCCCCAGTT
68096518 ATTAAAAGAG
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 32 0.28
26 83 0.72
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:68096722 original size:42 final size:42
Alignment explanation
Indices: 68096663--68096754 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
68096653 TAGTCTCCCC
* ** *
68096663 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
68096705 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
68096747 AAATGGGC
1 AAATGGGC
68096755 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:68096816 original size:31 final size:31
Alignment explanation
Indices: 68096778--68096892 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
68096768 CGTTTACAGT
* *
68096778 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
68096809 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
68096840 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
68096871 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
68096893 TCAAGACTAA
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:68103419 original size:10 final size:10
Alignment explanation
Indices: 68103406--68103430 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
68103396 GAAATGAAAT
68103406 GAATTGAATC
1 GAATTGAATC
68103416 GAATTGAATC
1 GAATTGAATC
68103426 GAATT
1 GAATT
68103431 ATGAGTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (10 bp):
GAATTGAATC
Found at i:68105510 original size:19 final size:21
Alignment explanation
Indices: 68105481--68105522 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
68105471 TAACATAAAT
*
68105481 CTAATCTACTTACTAACT-TA
1 CTAATCTACTTACAAACTCTA
68105501 CTAA-CTACTTACAAACTCTA
1 CTAATCTACTTACAAACTCTA
68105521 CT
1 CT
68105523 GAACATCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (21 bp):
CTAATCTACTTACAAACTCTA
Found at i:68107518 original size:43 final size:43
Alignment explanation
Indices: 68107454--68107537 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
68107444 CGCATGTATC
*
68107454 GCATCCATTATGAACTCGGACCACTCAACGAGCTCGGATGCTT
1 GCATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGCTT
*
68107497 GCATCCATAATGAACTTGGACCACTCAACGAGCTCGGATGC
1 GCATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
68107538 CTCATATATC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (43 bp):
GCATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGCTT
Found at i:68109658 original size:17 final size:18
Alignment explanation
Indices: 68109628--68109663 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
68109618 ATTCATTTTG
*
68109628 AATTGGTTATTTGATAGA
1 AATTGGTTAATTGATAGA
68109646 AATT-GTTAATTGATAGA
1 AATTGGTTAATTGATAGA
68109663 A
1 A
68109664 CTATATGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (18 bp):
AATTGGTTAATTGATAGA
Found at i:68111490 original size:453 final size:451
Alignment explanation
Indices: 68110597--68112362 Score: 2759
Period size: 453 Copynumber: 3.9 Consensus size: 451
68110587 TGCCAAGCTG
* * * *
68110597 TGTCTCAGG-CTGTGTATACCCAAAATAAACCTTAACCAACAATTTTACCATTTCAAGCTTACCT
1 TGTCTTAGGCCTGTG-A-ACCCAAAATGAACCTTAAACAACAAGTTTACCATTTCAAGCTTACCT
* *
68110661 GGACTCTAAGTGATCCATTTACCAGCCAAAAGACCTATTCAAAGTGACATT-AAACAAGCTAAAA
64 GGACTCTAAGTAATCCATTTACCAGCCAAAAGACCTATTCAAAGTGACATTAAAAAAAGCTAAAA
* * ** *
68110725 ACAAGCTAAATCAAGAATCATTGGTGCCTAACCAATGTATCCTCACTGATACCACAAGTATATAC
129 ACATGCTAAATCAACAATCATAAGTGCCTAACCAATGTATCCTCATTGATACCACAAGTATATAC
* * * *
68110790 AACTTTACAACCAAAAGAACTATCATTCAAAGTATTTTAAATCACACCATTTAACATTCAACCAA
194 AATTTTACAACAAAAAGAACTATCATTCAAAGTATGTTAAATCACACCATGTAACATTCAACCAA
* *
68110855 TATGCCAAACTTAGGCACCTCAGTCACAACATTCTATTAATACATACCATATATTTGCACTAAAA
259 TATGCCAAACTTAGGCACCTCAGTCACAACATTCCATTAACACATACCATATATTTGCACTAAAA
*
68110920 CATCTTCCTTAGTTCACGTATCATATGAGGTTAACTACTTGCACTTAAAATCATACTTTAACATT
324 CATCTTCCTTAGTTCACATATCATATGAGGTTAACTACTTGCACTTAAAATCATACTTTAACATT
* *
68110985 TTACATATCAAAACAATAAGGTGACATACAACCATGTCGCTAGGCCGTGTGTCTCACACAGTTA
389 TTACATATCAAAACAATAAGGTGACATAC-ACCGTGTCGCCAGGCCGTGTGTCTCACACAGTTA
* * *
68111049 TGTCTTAGGCCGTATAAACACAAAATGAACCTTAAACAACAAGTTTACCATTTCAAGCTTACCTG
1 TGTCTTAGGCC-TGTGAACCCAAAATGAACCTTAAACAACAAGTTTACCATTTCAAGCTTACCTG
*
68111114 GACTCTAAGTAATCCATTAACCAGCCAAAAGACCTATTCAAAGTGACATTAAAAAAAAGCT-AAA
65 GACTCTAAGTAATCCATTTACCAGCCAAAAGACCTATTCAAAGTGACATT-AAAAAAAGCTAAAA
* * * *
68111178 ACATGCTAAATTAACAATCATAAGTGCCTAGCCAATGTATCCTCATTGATACCATAAGTATAAAC
129 ACATGCTAAATCAACAATCATAAGTGCCTAACCAATGTATCCTCATTGATACCACAAGTATATAC
* * *
68111243 AATTTTACAAGAAAAAGAACTATCATTCAAAGTATGATAAATCACATCATGTAACATTCAACCAA
194 AATTTTACAACAAAAAGAACTATCATTCAAAGTATGTTAAATCACACCATGTAACATTCAACCAA
* * * *
68111308 TATGCCAAACTTAGGCATCTCAGTTAGAACATTCCATTAACACATACCATATATTTACACTAAAA
259 TATGCCAAACTTAGGCACCTCAGTCACAACATTCCATTAACACATACCATATATTTGCACTAAAA
*
68111373 TATCTTCCTTAGTTCACATATCATATGAGGTTAACTACTTGCACTTAAAATCATACTTTAACATT
324 CATCTTCCTTAGTTCACATATCATATGAGGTTAACTACTTGCACTTAAAATCATACTTTAACATT
* * * *
68111438 TTACATATCAAAACAATAAGGTGACATACGACCGTGTCACCAGGCTGTGTGTCTCACACGGTTG
389 TTACATATCAAAACAATAAGGTGACATAC-ACCGTGTCGCCAGGCCGTGTGTCTCACACAGTTA
* * * *
68111502 TGTTTTAGGCTCTGTGAACCCAAAATGAACCTTAAACAACTAGTTTACCATTTCAAGGTTACTTG
1 TGTCTTAGGC-CTGTGAACCCAAAATGAACCTTAAACAACAAGTTTACCATTTCAAGCTTACCTG
*
68111567 GACTCTAAGTAATCCATTTACCAGCCAAAAGACCTATTCAAAGTGGCATTAAAAAAAGCTAAAAA
65 GACTCTAAGTAATCCATTTACCAGCCAAAAGACCTATTCAAAGTGACATTAAAAAAAGCTAAAAA
* * *
68111632 CATGCTAAATCAAAAATCCTAAGTGCCTAACCAATGTATCCTTATTGATACCACAAGTATATACA
130 CATGCTAAATCAACAATCATAAGTGCCTAACCAATGTATCCTCATTGATACCACAAGTATATACA
*
68111697 ATTTTACAACAAAAAGAACTATCATTCAAAGTATGTTAAATCACACCATTTAACATTCAACCAAT
195 ATTTTACAACAAAAAGAACTATCATTCAAAGTATGTTAAATCACACCATGTAACATTCAACCAAT
*
68111762 ATGCCAAACTTAGGCACCTCAGTCAGAACATTCCATTAACACATACCATATATTTGCACTAAAAC
260 ATGCCAAACTTAGGCACCTCAGTCACAACATTCCATTAACACATACCATATATTTGCACTAAAAC
* *
68111827 ATCTTCCTTAGTTCACATATCATACT-AGGTTAATTACTTGCACTTAAAATCATACTTTAATATT
325 ATCTTCCTTAGTTCACATATCATA-TGAGGTTAACTACTTGCACTTAAAATCATACTTTAACATT
* * *
68111891 TTACATATCAAAACAATAAGGTGACATACAGCCGTGTCGCCAGGCCGTGTGTCTTACA-TGGTA
389 TTACATATCAAAACAATAAGGTGACATACA-CCGTGTCGCCAGGCCGTGTGTCTCACACAGTTA
* * * *
68111954 GTGTCTCAAGCTATGTGAACCCAAAATGAACCTTAAACAAAAAGTTTACCATTTCAAGCTTACCT
1 -TGTCTTAGGC-CTGTGAACCCAAAATGAACCTTAAACAACAAGTTTACCATTTCAAGCTTACCT
*
68112019 GGACTCTAAGTAATCCATTTACCAGCCAAAAGACCTATTTAAAGTGACATTAAAAAAAGCTAAAA
64 GGACTCTAAGTAATCCATTTACCAGCCAAAAGACCTATTCAAAGTGACATTAAAAAAAGCTAAAA
*
68112084 ACATGCTAAATCAACAATCCTAAGTGCCTAACCAATGTATCCTCATTGATACCACAAGTATATAC
129 ACATGCTAAATCAACAATCATAAGTGCCTAACCAATGTATCCTCATTGATACCACAAGTATATAC
*
68112149 AATTTTACAACAAAAAGAACTATCATTCAAAGTATGTTAAATCACACCATGTAACATTCAATCAA
194 AATTTTACAACAAAAAGAACTATCATTCAAAGTATGTTAAATCACACCATGTAACATTCAACCAA
* ** * *
68112214 TATGCCAAACTTAGGCATCAAAGTCACAACATTCTATTAACACATATCATATATTTGCACTAAAA
259 TATGCCAAACTTAGGCACCTCAGTCACAACATTCCATTAACACATACCATATATTTGCACTAAAA
* * *
68112279 CATCTTCCTCAGTTTACATATCATATGAGGTTAACTACTTGCACTTAAAATCATACTTTAACCTT
324 CATCTTCCTTAGTTCACATATCATATGAGGTTAACTACTTGCACTTAAAATCATACTTTAACATT
*
68112344 TTGCATATCAAAACAATAA
389 TTACATATCAAAACAATAA
68112363 TAATGACATA
Statistics
Matches: 1205, Mismatches: 99, Indels: 19
0.91 0.07 0.01
Matches are distributed among these distances:
452 114 0.09
453 1079 0.90
454 12 0.01
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.29
Consensus pattern (451 bp):
TGTCTTAGGCCTGTGAACCCAAAATGAACCTTAAACAACAAGTTTACCATTTCAAGCTTACCTGG
ACTCTAAGTAATCCATTTACCAGCCAAAAGACCTATTCAAAGTGACATTAAAAAAAGCTAAAAAC
ATGCTAAATCAACAATCATAAGTGCCTAACCAATGTATCCTCATTGATACCACAAGTATATACAA
TTTTACAACAAAAAGAACTATCATTCAAAGTATGTTAAATCACACCATGTAACATTCAACCAATA
TGCCAAACTTAGGCACCTCAGTCACAACATTCCATTAACACATACCATATATTTGCACTAAAACA
TCTTCCTTAGTTCACATATCATATGAGGTTAACTACTTGCACTTAAAATCATACTTTAACATTTT
ACATATCAAAACAATAAGGTGACATACACCGTGTCGCCAGGCCGTGTGTCTCACACAGTTA
Found at i:68114803 original size:30 final size:30
Alignment explanation
Indices: 68114752--68114812 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 30
68114742 GATTCATCCA
68114752 TGGAAATCAAAATAAAGAAAAGGATGA-AAT
1 TGGAAATCAAAATAAAGAAAA-GATGATAAT
* *
68114782 TGGAAAGTGAAAA-AAATAAAAGATGATAAT
1 TGGAAA-TCAAAATAAAGAAAAGATGATAAT
68114812 T
1 T
68114813 AATTAAATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 5 0.19
30 17 0.63
31 5 0.19
ACGTcount: A:0.59, C:0.02, G:0.20, T:0.20
Consensus pattern (30 bp):
TGGAAATCAAAATAAAGAAAAGATGATAAT
Found at i:68115790 original size:65 final size:65
Alignment explanation
Indices: 68115713--68115853 Score: 194
Period size: 65 Copynumber: 2.2 Consensus size: 65
68115703 ACTACTGCAT
* * * *
68115713 CTCTTTGTGAGTGTCCTGTTATATGATCGGTTGTGATCTTGCATATATTAG-GGACATAAACGCA
1 CTCTTTGTGAGTGTCCTATTATATGATCGGTTGTGATCCTGCATATATT-GCAGACACAAACGCA
*
68115777 G
65 A
* * *
68115778 CTCTTTGTGAGTGTCCTATTTTATGATTGGTTGTGATCCTGCATATGTTGCAGACACAAACGCAA
1 CTCTTTGTGAGTGTCCTATTATATGATCGGTTGTGATCCTGCATATATTGCAGACACAAACGCAA
68115843 CTCTTTGTGAG
1 CTCTTTGTGAG
68115854 CTTCTTGATA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 1 0.01
65 66 0.99
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.38
Consensus pattern (65 bp):
CTCTTTGTGAGTGTCCTATTATATGATCGGTTGTGATCCTGCATATATTGCAGACACAAACGCAA
Found at i:68116048 original size:26 final size:26
Alignment explanation
Indices: 68115843--68116054 Score: 110
Period size: 26 Copynumber: 8.6 Consensus size: 26
68115833 ACAAACGCAA
*
68115843 CTCTTTGTGAGCTTCTTGA-T-ATGG
1 CTCTTTGTGAGCTTCCTGATTAATGG
** *
68115867 CTCACT-TGAACTTCCTGA-TATATGG
1 CTCTTTGTGAGCTTCCTGATTA-ATGG
* ** * *
68115892 CTATCCG-GAGC-TCTTGATTAAAGG
1 CTCTTTGTGAGCTTCCTGATTAATGG
* * * **
68115916 CCCTTTGTGAGCATCATGATTAAAAG
1 CTCTTTGTGAGCTTCCTGATTAATGG
* *
68115942 TTCTTTGTGAACTTCCTGATT-ATGG
1 CTCTTTGTGAGCTTCCTGATTAATGG
* **
68115967 CTC-TTATGAGCTTCCTG-TTATATAA
1 CTCTTTGTGAGCTTCCTGATTA-ATGG
* *
68115992 C-C-TGGATAAGCTTCCTGA-T-A-GG
1 CTCTTTG-TGAGCTTCCTGATTAATGG
68116014 CTCTTTGTGAGCTTCCTGATTAATGG
1 CTCTTTGTGAGCTTCCTGATTAATGG
68116040 CTCTTTGTGAGCTTC
1 CTCTTTGTGAGCTTC
68116055 TTGTTATATA
Statistics
Matches: 138, Mismatches: 35, Indels: 28
0.69 0.17 0.14
Matches are distributed among these distances:
22 1 0.01
23 26 0.19
24 32 0.23
25 35 0.25
26 44 0.32
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (26 bp):
CTCTTTGTGAGCTTCCTGATTAATGG
Found at i:68121290 original size:18 final size:18
Alignment explanation
Indices: 68121253--68121291 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
68121243 TTGTAAATCA
*
68121253 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
68121271 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
68121289 AAA
1 AAA
68121292 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:68123047 original size:25 final size:25
Alignment explanation
Indices: 68123019--68123068 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
68123009 CTTAGTTACC
68123019 TCAAAATAGAATGAATGGTAAGTTA
1 TCAAAATAGAATGAATGGTAAGTTA
68123044 TCAAAATAGAATGAATGGTAAGTTA
1 TCAAAATAGAATGAATGGTAAGTTA
68123069 AGTACCATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.04, G:0.20, T:0.28
Consensus pattern (25 bp):
TCAAAATAGAATGAATGGTAAGTTA
Found at i:68129653 original size:34 final size:33
Alignment explanation
Indices: 68129615--68129679 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
68129605 AATATTAGCG
*
68129615 TGGGCCTTAGCCC-ATTACAGTAGCAGTATCAATA
1 TGGGCCCTAGCCCAATT-CAGTA-CAGTATCAATA
*
68129649 TGGGCCCTAGCCCAATTCAGTATAGTATCAA
1 TGGGCCCTAGCCCAATTCAGTACAGTATCAA
68129680 AAATGCATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 8 0.29
34 17 0.61
35 3 0.11
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (33 bp):
TGGGCCCTAGCCCAATTCAGTACAGTATCAATA
Found at i:68140568 original size:46 final size:44
Alignment explanation
Indices: 68140510--68140682 Score: 143
Period size: 46 Copynumber: 3.8 Consensus size: 44
68140500 ATTCGTGTGT
* * *
68140510 GAGCTAGTGTAAGACATGTTTGGGACATGCATCAGCCGCATT-ATGA-
1 GAGCGAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGA-GAC
* *
68140556 GAGCGAGTGTAAGACCATGTCTGAGACAGGCATCGACATTGAGAC
1 GAGCGAGTGTAAGA-CATGTCTGGGACATGCATCGACATTGAGAC
* * *
68140601 GAGGGTTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAC
1 GAGCG--AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGAC
* ** *
68140647 GTAAGCCAGTACAACACATGTCTGGGACATGCATCG
1 G--AGCGAGTGTAAGACATGTCTGGGACATGCATCG
68140683 GCTACGAGAT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
44 6 0.06
45 5 0.05
46 67 0.64
47 25 0.24
48 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.21
Consensus pattern (44 bp):
GAGCGAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGAC
Found at i:68140739 original size:47 final size:47
Alignment explanation
Indices: 68140688--68140777 Score: 146
Period size: 47 Copynumber: 1.9 Consensus size: 47
68140678 CATCGGCTAC
68140688 GAGATGAT-AGTCAATGTAAGACCATGTCTAGAACATGGCATCGACTT
1 GAGAT-ATGAGTCAATGTAAGACCATGTCTAGAACATGGCATCGACTT
* *
68140735 GAGATATGAGTCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 GAGATATGAGTCAATGTAAGACCATGTCTAGAACATGGCATCG
68140778 GCACCTTACC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
46 2 0.05
47 38 0.95
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (47 bp):
GAGATATGAGTCAATGTAAGACCATGTCTAGAACATGGCATCGACTT
Found at i:68141067 original size:13 final size:13
Alignment explanation
Indices: 68141049--68141113 Score: 76
Period size: 13 Copynumber: 5.0 Consensus size: 13
68141039 AGTTTGGTAA
68141049 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
** *
68141062 TGCTTTTGGGAGG
1 TGCTTTTGAAAAG
* *
68141075 TGCTGTAGAAAAG
1 TGCTTTTGAAAAG
*
68141088 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
68141101 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
68141114 CTTGGTTTAA
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 40 1.00
ACGTcount: A:0.26, C:0.08, G:0.31, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:68148560 original size:24 final size:24
Alignment explanation
Indices: 68148172--68148558 Score: 711
Period size: 24 Copynumber: 16.1 Consensus size: 24
68148162 GCAAAGACCA
68148172 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68148196 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68148220 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68148244 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68148268 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68148292 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68148316 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
68148340 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
68148364 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
68148388 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
68148412 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
68148436 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
68148460 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68148484 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
68148508 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
68148532 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
68148556 TAT
1 TAT
68148559 AGTCACATTC
Statistics
Matches: 357, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 357 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:68156369 original size:24 final size:24
Alignment explanation
Indices: 68156322--68156585 Score: 462
Period size: 24 Copynumber: 11.1 Consensus size: 24
68156312 GTGTGCAAAG
68156322 ATGGCACTATGTGTGCGA-TT-CT
1 ATGGCACTATGTGTGCGATTTACT
68156344 ATGGCACTATGTGTGCGATTTACT
1 ATGGCACTATGTGTGCGATTTACT
*
68156368 ATGGCACTATGTGTGCGATTCACT
1 ATGGCACTATGTGTGCGATTTACT
68156392 ATGGCACTATGTGTGCGA-TTACT
1 ATGGCACTATGTGTGCGATTTACT
68156415 ATGGCACTATGTGTGCGATTTACT
1 ATGGCACTATGTGTGCGATTTACT
*
68156439 ATGGCACTATGTGTGCGATTCACT
1 ATGGCACTATGTGTGCGATTTACT
68156463 ATGGCACTATGTGTGCGATTTACT
1 ATGGCACTATGTGTGCGATTTACT
*
68156487 ATGGCACTATGTGTGCGATTCACT
1 ATGGCACTATGTGTGCGATTTACT
*
68156511 ATGGCACTATGTGTGCGATTCACT
1 ATGGCACTATGTGTGCGATTTACT
68156535 ATGGCACTATGTGTGCGATTTACT
1 ATGGCACTATGTGTGCGATTTACT
*
68156559 ATGGCACTATGTGTGCGATTTATT
1 ATGGCACTATGTGTGCGATTTACT
68156583 ATG
1 ATG
68156586 TGTGCGATTC
Statistics
Matches: 232, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
22 18 0.08
23 24 0.10
24 190 0.82
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
ATGGCACTATGTGTGCGATTTACT
Found at i:68156410 original size:48 final size:48
Alignment explanation
Indices: 68156322--68156644 Score: 472
Period size: 48 Copynumber: 6.6 Consensus size: 48
68156312 GTGTGCAAAG
68156322 ATGGCACTATGTGTGCGA-TT-CTATGGCACTATGTGTGCGATTTACT
1 ATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACT
*
68156368 ATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA-TTACT
1 ATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACT
*
68156415 ATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACT
1 ATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACT
*
68156463 ATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACT
1 ATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACT
*
68156511 ATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACT
1 ATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACT
*
68156559 ATGGCACTATGTGTGCGATTTATTATGTGTGCGATTCTATGCTATGTGTGCGATTTACT
1 ATGGCACTATGTGTGCGATTTACTA----TG-G---C-A--CTATGTGTGCGATTTACT
*
68156618 ATGGCACTATGTGTGCGATTTGCTATG
1 ATGGCACTATGTGTGCGATTTACTATG
68156645 TGTGATGCTA
Statistics
Matches: 254, Mismatches: 9, Indels: 19
0.90 0.03 0.07
Matches are distributed among these distances:
46 18 0.07
47 47 0.19
48 141 0.56
52 2 0.01
53 1 0.00
55 2 0.01
56 1 0.00
57 1 0.00
59 41 0.16
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (48 bp):
ATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACT
Found at i:68156599 original size:14 final size:16
Alignment explanation
Indices: 68156564--68156620 Score: 78
Period size: 16 Copynumber: 3.4 Consensus size: 16
68156554 TTACTATGGC
68156564 ACTATGTGTGCGATTT
1 ACTATGTGTGCGATTT
*
68156580 ATTATGTGTGCGATTCT
1 ACTATGTGTGCGATT-T
68156597 ATGCTATGTGTGCGATTT
1 A--CTATGTGTGCGATTT
68156615 ACTATG
1 ACTATG
68156621 GCACTATGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
16 19 0.53
17 2 0.06
18 2 0.06
19 13 0.36
ACGTcount: A:0.19, C:0.12, G:0.25, T:0.44
Consensus pattern (16 bp):
ACTATGTGTGCGATTT
Found at i:68156619 original size:59 final size:60
Alignment explanation
Indices: 68156516--68156677 Score: 215
Period size: 59 Copynumber: 2.7 Consensus size: 60
68156506 TCACTATGGC
68156516 ACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
1 ACTATGTGTGCGATT--CTAT-G-ACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
*
68156580 ATTATGTGTGCGATTCTATG-CTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
1 ACTATGTGTGCGATTCTATGACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
* * *
68156639 GCTATGTGT--GATGCTA-GCACTATGTGTGCGATTTGCTAT
1 ACTATGTGTGCGATTCTATG-ACTATGTGTGCGATTTACTAT
68156678 AGTCACATTC
Statistics
Matches: 91, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
56 1 0.01
57 6 0.07
58 19 0.21
59 46 0.51
61 1 0.01
62 4 0.04
64 14 0.15
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.40
Consensus pattern (60 bp):
ACTATGTGTGCGATTCTATGACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTT
Found at i:68156629 original size:24 final size:21
Alignment explanation
Indices: 68156328--68156644 Score: 245
Period size: 24 Copynumber: 14.0 Consensus size: 21
68156318 AAAGATGGCA
68156328 CTATGTGTGCGA-TTCTATGG
1 CTATGTGTGCGATTTCTATGG
68156348 CACTATGTGTGCGATTTACTATGG
1 --CTATGTGTGCGATTT-CTATGG
*
68156372 CACTATGTGTGCGATTCACTATGG
1 --CTATGTGTGCGATT-TCTATGG
*
68156396 CACTATGTGTGCGATTACTATGG
1 --CTATGTGTGCGATTTCTATGG
68156419 CACTATGTGTGCGATTTACTATGG
1 --CTATGTGTGCGATTT-CTATGG
*
68156443 CACTATGTGTGCGATTCACTATGG
1 --CTATGTGTGCGATT-TCTATGG
68156467 CACTATGTGTGCGATTTACTATGG
1 --CTATGTGTGCGATTT-CTATGG
*
68156491 CACTATGTGTGCGATTCACTATGG
1 --CTATGTGTGCGATT-TCTATGG
*
68156515 CACTATGTGTGCGATTCACTATGG
1 --CTATGTGTGCGATT-TCTATGG
68156539 CACTATGTGTGCGATTTACTATGG
1 --CTATGTGTGCGATTT-CTATGG
68156563 CACTATGTGTGCGA-TT-TAT--
1 --CTATGTGTGCGATTTCTATGG
68156582 -TATGTGTGCGA-TTCTAT-G
1 CTATGTGTGCGATTTCTATGG
68156600 CTATGTGTGCGATTTACTATGG
1 CTATGTGTGCGATTT-CTATGG
68156622 CACTATGTGTGCGATTTGCTATG
1 --CTATGTGTGCGATTT-CTATG
68156645 TGTGATGCTA
Statistics
Matches: 272, Mismatches: 7, Indels: 30
0.88 0.02 0.10
Matches are distributed among these distances:
16 13 0.05
17 3 0.01
19 11 0.04
20 2 0.01
21 7 0.03
22 13 0.05
23 27 0.10
24 196 0.72
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (21 bp):
CTATGTGTGCGATTTCTATGG
Found at i:68158702 original size:26 final size:27
Alignment explanation
Indices: 68158649--68158716 Score: 104
Period size: 26 Copynumber: 2.6 Consensus size: 27
68158639 AAACTTGTAC
68158649 AGCACTAAGTGTG-GAGTTTGATCATAT
1 AGCACTAAGTGTGCGAG-TTGATCATAT
*
68158676 AGCACTAAGTGTGCGA-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATCATAT
68158702 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
68158717 GACTCACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 24 0.62
27 13 0.33
28 2 0.05
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATCATAT
Found at i:68166655 original size:29 final size:29
Alignment explanation
Indices: 68166621--68166723 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
68166611 TAATCAGCCG
** *
68166621 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
68166650 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
68166679 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
68166708 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68166724 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:68174727 original size:29 final size:29
Alignment explanation
Indices: 68174693--68174795 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
68174683 TAATCAGCCG
** *
68174693 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
68174722 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
68174751 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
68174780 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68174796 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:68182807 original size:29 final size:29
Alignment explanation
Indices: 68182773--68182875 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
68182763 TAATCAGCCG
** *
68182773 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
68182802 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
68182831 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
68182860 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68182876 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:68186129 original size:24 final size:24
Alignment explanation
Indices: 68186088--68186134 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
68186078 CTGTCAGGAG
* **
68186088 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAAGAGCAGATAAGGGAT
68186112 AGGATTTAAGAGCAGATAAGGGA
1 AGGATTTAAGAGCAGATAAGGGA
68186135 GGAAATCTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.36, T:0.23
Consensus pattern (24 bp):
AGGATTTAAGAGCAGATAAGGGAT
Found at i:68187613 original size:29 final size:28
Alignment explanation
Indices: 68187551--68187665 Score: 128
Period size: 28 Copynumber: 4.1 Consensus size: 28
68187541 AGGAAGCGTC
* * *
68187551 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACATATTATCTGTT
68187579 CTGGTGGCTCTGCCACATATATATCTGTT
1 CTGGTGGCTCTGCCACATAT-TATCTGTT
* *
68187608 CTGGTGGCTCTGCCAC-GATTATATGTAT
1 CTGGTGGCTCTGCCACATATTATCTGT-T
* *
68187636 CTGGTGACTCTGTCAC--ATTATCTGTT
1 CTGGTGGCTCTGCCACATATTATCTGTT
68187662 CTGG
1 CTGG
68187666 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
26 5 0.06
27 14 0.18
28 35 0.45
29 23 0.30
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACATATTATCTGTT
Found at i:68187639 original size:57 final size:54
Alignment explanation
Indices: 68187551--68187665 Score: 142
Period size: 57 Copynumber: 2.1 Consensus size: 54
68187541 AGGAAGCGTC
* *
68187551 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATATGATCTGGTGACTCTGCCAC--AT-TATCTGTT
* * *
68187608 CTGGTGGCTCTGCCAC-GATTATATGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATATG-ATCTGGTGACTCTGCCACATTATCTGTT
68187662 CTGG
1 CTGG
68187666 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 12 0.23
55 2 0.04
56 7 0.13
57 31 0.60
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATATGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:68189718 original size:13 final size:13
Alignment explanation
Indices: 68189700--68189725 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68189690 CCTAGCACAC
68189700 GGCCGTGTGACTT
1 GGCCGTGTGACTT
68189713 GGCCGTGTGACTT
1 GGCCGTGTGACTT
68189726 TAATTTCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.23, G:0.38, T:0.31
Consensus pattern (13 bp):
GGCCGTGTGACTT
Found at i:68203079 original size:13 final size:13
Alignment explanation
Indices: 68203061--68203086 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68203051 GTTCGACAGG
68203061 GACACGCCCGTGT
1 GACACGCCCGTGT
68203074 GACACGCCCGTGT
1 GACACGCCCGTGT
68203087 TCGATTGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:68205704 original size:17 final size:17
Alignment explanation
Indices: 68205670--68205704 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
68205660 TTTGTAAATA
*
68205670 AACACCCATGGTAGGCG
1 AACACCCATGATAGGCG
*
68205687 AACACCCATGATATGCG
1 AACACCCATGATAGGCG
68205704 A
1 A
68205705 CCCTAGGTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.29, G:0.23, T:0.14
Consensus pattern (17 bp):
AACACCCATGATAGGCG
Found at i:68206668 original size:39 final size:39
Alignment explanation
Indices: 68206600--68206676 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
68206590 AGTAGGAAAC
* * *
68206600 AATGTCATCAAAACTGGATAAGCTTGGATGGTAGTTTAA
1 AATGCCATCAAAACTGGATAAGATTGGATGATAGTTTAA
68206639 AATGCCATCAAAACTAGG-T-AGATTGGGATGATAGTTTA
1 AATGCCATCAAAACT-GGATAAGATT-GGATGATAGTTTA
68206677 TTGTAGTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 4 0.12
39 27 0.82
40 2 0.06
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.30
Consensus pattern (39 bp):
AATGCCATCAAAACTGGATAAGATTGGATGATAGTTTAA
Found at i:68206727 original size:46 final size:47
Alignment explanation
Indices: 68206636--68206729 Score: 118
Period size: 46 Copynumber: 2.0 Consensus size: 47
68206626 GATGGTAGTT
* * **
68206636 TAAAATGCCATCAAAACTAGGTAGATTGGGATGATAGTTTATTGTAG
1 TAAAATGCCATCAAAACTAGGCAGATTGGGAGGATAAATTATTGTAG
** *
68206683 TAAAATGCCATCAAAGTTAGGCA-ATTGGGAGGGTAAATTATTGTAG
1 TAAAATGCCATCAAAACTAGGCAGATTGGGAGGATAAATTATTGTAG
68206729 T
1 T
68206730 TTACAGATGA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
46 20 0.50
47 20 0.50
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (47 bp):
TAAAATGCCATCAAAACTAGGCAGATTGGGAGGATAAATTATTGTAG
Found at i:68210896 original size:48 final size:48
Alignment explanation
Indices: 68210768--68210912 Score: 191
Period size: 48 Copynumber: 3.0 Consensus size: 48
68210758 AAGGAAAGAT
* * *
68210768 TTGAAAAGAGTAAGTTAATATGACTCTGTATGAGATATACGATATGTA
1 TTGAAAAGAGTAAGTTAATATGACTCTGTATGTGATATATGTTATGTA
* * *
68210816 TTGAAAAGAGTAAGTTAATGTAAATCTGTATGTGATATATGTTATGTA
1 TTGAAAAGAGTAAGTTAATATGACTCTGTATGTGATATATGTTATGTA
* * * * *
68210864 TTGAAAAGAATAAATTAATATGACTCTATATGTGTTAAATGTTATGTA
1 TTGAAAAGAGTAAGTTAATATGACTCTGTATGTGATATATGTTATGTA
68210912 T
1 T
68210913 AATTGCTGAT
Statistics
Matches: 83, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.38
Consensus pattern (48 bp):
TTGAAAAGAGTAAGTTAATATGACTCTGTATGTGATATATGTTATGTA
Found at i:68214387 original size:48 final size:49
Alignment explanation
Indices: 68214324--68214429 Score: 151
Period size: 49 Copynumber: 2.2 Consensus size: 49
68214314 ATTTCTTATG
*
68214324 ATATGTTATTTATTGAAAAAAGT-AAGTTAATATGACTCTATATATGAT
1 ATATGTTATGTATTGAAAAAAGTAAAGTTAATATGACTCTATATATGAT
* * * *
68214372 ATATGTTATGTATTGAAAAGAGTAAATTTAATATGACTCTATATGTGTT
1 ATATGTTATGTATTGAAAAAAGTAAAGTTAATATGACTCTATATATGAT
*
68214421 AAATGTTAT
1 ATATGTTAT
68214430 CTATAATTGC
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
48 21 0.41
49 30 0.59
ACGTcount: A:0.40, C:0.04, G:0.14, T:0.42
Consensus pattern (49 bp):
ATATGTTATGTATTGAAAAAAGTAAAGTTAATATGACTCTATATATGAT
Found at i:68222802 original size:39 final size:40
Alignment explanation
Indices: 68222702--68222883 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
68222692 TCGAATGATG
* * *
68222702 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
68222742 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
68222782 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
68222820 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
68222861 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68222884 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:68222847 original size:78 final size:80
Alignment explanation
Indices: 68222702--68222883 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
68222692 TCGAATGATG
* * * *
68222702 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
68222767 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
68222782 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
68222844 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
68222861 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
68222884 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:68224659 original size:21 final size:21
Alignment explanation
Indices: 68224635--68224676 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
68224625 TTACTTCGTT
*
68224635 TATAGTCAT-TTAACTAACATA
1 TATACTCATCTTAA-TAACATA
*
68224656 TATACTTATCTTAATAACATA
1 TATACTCATCTTAATAACATA
68224677 AATATTGCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.40
Consensus pattern (21 bp):
TATACTCATCTTAATAACATA
Found at i:68259385 original size:22 final size:22
Alignment explanation
Indices: 68259354--68259463 Score: 134
Period size: 22 Copynumber: 5.0 Consensus size: 22
68259344 AACTCTGTAA
68259354 ACATGCGAGCCTATATGTTAGT
1 ACATGCGAGCCTATATGTTAGT
* *
68259376 ACATGTGAGCCAATATGTTAGT
1 ACATGCGAGCCTATATGTTAGT
* *
68259398 ATATGTGAGCCTATATGTTAGT
1 ACATGCGAGCCTATATGTTAGT
*
68259420 ACATGCAAGCCTATATGTTA-T
1 ACATGCGAGCCTATATGTTAGT
*
68259441 ACCATGCAAGCCCT-TATGTTAGT
1 A-CATGCGAG-CCTATATGTTAGT
68259464 TTTGTGAACC
Statistics
Matches: 78, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
21 2 0.03
22 72 0.92
23 4 0.05
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (22 bp):
ACATGCGAGCCTATATGTTAGT
Found at i:68260567 original size:10 final size:10
Alignment explanation
Indices: 68260554--68260598 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
68260544 TTAATTACGG
68260554 TTAAGGTTAA
1 TTAAGGTTAA
* *
68260564 TTAA-TTTAC
1 TTAAGGTTAA
68260573 TTAA--TTAA
1 TTAAGGTTAA
68260581 TTAAGGTTAA
1 TTAAGGTTAA
68260591 TTAAGGTT
1 TTAAGGTT
68260599 TAATCTAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 7 0.23
9 7 0.23
10 16 0.53
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (10 bp):
TTAAGGTTAA
Found at i:68264565 original size:30 final size:30
Alignment explanation
Indices: 68264531--68264590 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
68264521 TTCCTGAGCC
*
68264531 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
68264561 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
68264591 CATATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:68269233 original size:45 final size:44
Alignment explanation
Indices: 68269134--68269296 Score: 217
Period size: 43 Copynumber: 3.8 Consensus size: 44
68269124 TTCATCCACC
*
68269134 GGCATT-TCGCCTGCTAGGCTCGAA-GCCCGATATCATTTCACT
1 GGCATTATAGCCTGCTAGGCTCGAAGGCCCGATATCATTTCACT
* *
68269176 AGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATCTCACT
1 GGCATTATAGCCTGCTAGGCTCGAAGGCCCG-ATA-TCATTTCACT
*
68269221 GGCATTATAGCCTGCTA-GCTCAAAGGCCCGATATCATTTCACT
1 GGCATTATAGCCTGCTAGGCTCGAAGGCCCGATATCATTTCACT
* * *
68269264 GGCTTTATAACCTACTAGGCTCGAAGGCCCGAT
1 GGCATTATAGCCTGCTAGGCTCGAAGGCCCGAT
68269297 TAGTACCGTA
Statistics
Matches: 105, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
42 6 0.06
43 41 0.39
44 31 0.30
45 26 0.25
46 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (44 bp):
GGCATTATAGCCTGCTAGGCTCGAAGGCCCGATATCATTTCACT
Found at i:68269250 original size:88 final size:87
Alignment explanation
Indices: 68269134--68269301 Score: 248
Period size: 88 Copynumber: 1.9 Consensus size: 87
68269124 TTCATCCACC
* * * *
68269134 GGCATTTCGCCTGCTAGGCTCGAAGCCCGATATCATTTCACTAGCATTATAGCCTGCTAGGCTCG
1 GGCATTTAGCCTGCTAGGCTCAAAGCCCGATATCATTTCACTAGCATTATAACCTACTAGGCTCG
68269199 AAGGCCCGAATAGTATCTCACT
66 AAGGCCCGAATAGTATCTCACT
* *
68269221 GGCATTATAGCCTGCTA-GCTCAAAGGCCCGATATCATTTCACTGGCTTTATAACCTACTAGGCT
1 GGCATT-TAGCCTGCTAGGCTCAAA-GCCCGATATCATTTCACTAGCATTATAACCTACTAGGCT
*
68269285 CGAAGGCCCGATTAGTA
64 CGAAGGCCCGAATAGTA
68269302 CCGTACGATA
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
87 12 0.17
88 60 0.83
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (87 bp):
GGCATTTAGCCTGCTAGGCTCAAAGCCCGATATCATTTCACTAGCATTATAACCTACTAGGCTCG
AAGGCCCGAATAGTATCTCACT
Found at i:68277172 original size:44 final size:44
Alignment explanation
Indices: 68277036--68277186 Score: 209
Period size: 45 Copynumber: 3.4 Consensus size: 44
68277026 CGACATTTCA
*
68277036 CCTGCTAGGCTTGAA-G-CTCGATATCATTTCACCGGCATTATAG
1 CCTGCTAGGCTCGAAGGCCT-GATATCATTTCACCGGCATTATAG
* *
68277079 CCTGCTAGGCTCGAAGGCCTGAATAGT-ATCTCACCGGCATTATAT
1 CCTGCTAGGCTCGAAGGCCTG-ATA-TCATTTCACCGGCATTATAG
* *
68277124 CCTGCTAGGCTCAAAGGCCTGATATCATTTCACCGGTATTATAG
1 CCTGCTAGGCTCGAAGGCCTGATATCATTTCACCGGCATTATAG
68277168 CCTGCTAGGCTCGAAGGCC
1 CCTGCTAGGCTCGAAGGCC
68277187 CAATTAGTAC
Statistics
Matches: 95, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
43 15 0.16
44 38 0.40
45 41 0.43
46 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (44 bp):
CCTGCTAGGCTCGAAGGCCTGATATCATTTCACCGGCATTATAG
Found at i:68279784 original size:53 final size:53
Alignment explanation
Indices: 68279704--68279812 Score: 209
Period size: 53 Copynumber: 2.1 Consensus size: 53
68279694 TTATGGATGA
68279704 TTAAATTTATTACTTGGATTACTCTTGATTGATTGCCTAAATAGTAAATAATG
1 TTAAATTTATTACTTGGATTACTCTTGATTGATTGCCTAAATAGTAAATAATG
*
68279757 TTAAATTTATTACTTGGATTACTCTTGATTGGTTGCCTAAATAGTAAATAATG
1 TTAAATTTATTACTTGGATTACTCTTGATTGATTGCCTAAATAGTAAATAATG
68279810 TTA
1 TTA
68279813 CAAAATACCC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (53 bp):
TTAAATTTATTACTTGGATTACTCTTGATTGATTGCCTAAATAGTAAATAATG
Found at i:68290746 original size:34 final size:34
Alignment explanation
Indices: 68290705--68290773 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
68290695 CTAGATCCAG
*
68290705 ACCATAGGATATCACAACCCAATATAATCTAAGT
1 ACCATAGGATATCACAACCCAATATAACCTAAGT
*
68290739 ACCATAGGATATCACAACCTAATATAACCTAAGT
1 ACCATAGGATATCACAACCCAATATAACCTAAGT
68290773 A
1 A
68290774 TTACTTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.45, C:0.23, G:0.09, T:0.23
Consensus pattern (34 bp):
ACCATAGGATATCACAACCCAATATAACCTAAGT
Found at i:68293267 original size:87 final size:86
Alignment explanation
Indices: 68293098--68293373 Score: 294
Period size: 87 Copynumber: 3.2 Consensus size: 86
68293088 TTTATTACAT
* * * * **
68293098 TTTGATTTTGTTGCCAAAAATGAGAAATTAAATTAAATTAAATATGTTTCGGGATTTATTCCCAC
1 TTTGATTTTGTTTCCAAAAACGAGAAATTAAA-TAAATAAAATCTGTTTCGGGATTTATTCCTGC
* *
68293163 CGTTCAATAAAGA-TTTATTTGA
65 CGTTTAA-CAAGATTTTATTTGA
*
68293185 TTTGATTTTGTTTTCAAAAACGAGAAATTAAATAAAATAAAATCTGTTTCGGGATTTATTCCTGC
1 TTTGATTTTGTTTCCAAAAACGAGAAATTAAAT-AAATAAAATCTGTTTCGGGATTTATTCCTGC
**
68293250 TATTTAACAAGATTTTATTTGA
65 CGTTTAACAAGATTTTATTTGA
* ** * * *
68293272 TTTTATTTTGTTTCCAAATTC--G-AATTGAAATAAATAAAATCTATTTCAGGATTTATTCTTGC
1 TTTGATTTTGTTTCCAAAAACGAGAAATT-AAATAAATAAAATCTGTTTCGGGATTTATTCCTGC
*
68293334 CGTTTAACAAG-TTTTCATTCGA
65 CGTTTAACAAGATTTT-ATTTGA
68293356 TATTG-TTTTGTTTCCAAA
1 T-TTGATTTTGTTTCCAAA
68293374 CAAAGACGTA
Statistics
Matches: 162, Mismatches: 22, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
83 4 0.02
84 60 0.37
85 7 0.04
86 5 0.03
87 86 0.53
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.43
Consensus pattern (86 bp):
TTTGATTTTGTTTCCAAAAACGAGAAATTAAATAAATAAAATCTGTTTCGGGATTTATTCCTGCC
GTTTAACAAGATTTTATTTGA
Found at i:68293340 original size:84 final size:84
Alignment explanation
Indices: 68293210--68293441 Score: 242
Period size: 84 Copynumber: 2.8 Consensus size: 84
68293200 AAAAACGAGA
* * * **
68293210 AATT-AAATAAAATAAAATCTGTTTCGGGATTTATTCCTGCTATTTAACAAGATTTT-ATTTGAT
1 AATTGAAATAAAATAAAATCTATTTCAGGATTTATTCTTGCCGTTTAACAAGATTTTAATTTGAT
68293273 TTTATTTTGTTTCCAAATTCG
66 TTTATTTTGTTTCCAAA--CG
* *
68293294 AATTGAAAT-AAATAAAATCTATTTCAGGATTTATTCTTGCCGTTTAACAAG-TTTTCATTCGAT
1 AATTGAAATAAAATAAAATCTATTTCAGGATTTATTCTTGCCGTTTAACAAGATTTTAATTTGAT
* * *
68293357 ATTGTTTTGTTTCCAAACA
66 TTTATTTTGTTTCCAAACG
** * * * * *
68293376 AAGACGTAATCAAAT-AATTCTATTTCAGGATTTATTCTCGCCGTTTAAC-ATATTTTAATTTGA
1 AA-TTGAAATAAAATAAAATCTATTTCAGGATTTATTCTTGCCGTTTAACAAGATTTTAATTTGA
68293439 TTT
65 TTT
68293442 AATGATACAA
Statistics
Matches: 125, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
82 4 0.03
83 51 0.41
84 66 0.53
85 4 0.03
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.44
Consensus pattern (84 bp):
AATTGAAATAAAATAAAATCTATTTCAGGATTTATTCTTGCCGTTTAACAAGATTTTAATTTGAT
TTTATTTTGTTTCCAAACG
Found at i:68294505 original size:14 final size:14
Alignment explanation
Indices: 68294467--68294497 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
68294457 ATAAAAGAAA
*
68294467 TTTGGGTAAAATAC
1 TTTGGGGAAAATAC
68294481 TTTGGGGAAAATAC
1 TTTGGGGAAAATAC
68294495 TTT
1 TTT
68294498 TTGGAAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (14 bp):
TTTGGGGAAAATAC
Found at i:68296224 original size:2 final size:2
Alignment explanation
Indices: 68296217--68296242 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
68296207 TGTATACATG
68296217 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
68296243 AGAACAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:68313538 original size:24 final size:23
Alignment explanation
Indices: 68313472--68313552 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 23
68313462 CATCTCGAAA
* *
68313472 GAGCTTACTG-TTCAGGTCAATA
1 GAGCTTACTGTTTCAGCTCAATT
* * *
68313494 GAGCTTTCCGTTTCCAACTCAATT
1 GAGCTTACTGTTT-CAGCTCAATT
*
68313518 GAGCTTACTGTTATCAGCTCATTAT
1 GAGCTTACTGTT-TCAGCTCAAT-T
68313543 GAGCTTACTG
1 GAGCTTACTG
68313553 GCCATGTCTC
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
22 8 0.17
23 2 0.04
24 24 0.52
25 12 0.26
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCAATT
Found at i:68315378 original size:40 final size:39
Alignment explanation
Indices: 68315333--68315462 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
68315323 CGGAACATAA
68315333 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
68315373 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
68315413 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
68315453 CCGGATATAA
1 CCGGATATAA
68315463 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:68315477 original size:40 final size:40
Alignment explanation
Indices: 68315349--68315500 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
68315339 ATAACCATGT
* * *
68315349 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
68315389 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
68315429 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
68315469 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
68315501 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:68315483 original size:80 final size:80
Alignment explanation
Indices: 68315349--68315498 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
68315339 ATAACCATGT
*
68315349 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
68315413 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
68315429 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
68315492 CCCGGAT
64 CCCGGAT
68315499 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:68321670 original size:21 final size:21
Alignment explanation
Indices: 68321644--68321683 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
68321634 AGTTACACGG
68321644 CTGGCTCACACGGGCGTGTCC
1 CTGGCTCACACGGGCGTGTCC
68321665 CTGGCTCACACGGGCGTGT
1 CTGGCTCACACGGGCGTGT
68321684 GACTCTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.10, C:0.35, G:0.35, T:0.20
Consensus pattern (21 bp):
CTGGCTCACACGGGCGTGTCC
Found at i:68339403 original size:37 final size:37
Alignment explanation
Indices: 68339353--68339517 Score: 285
Period size: 37 Copynumber: 4.4 Consensus size: 37
68339343 TTATTACGAA
68339353 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
68339390 GTCTTACCCGGACATAATCTCCACACGAAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
* *
68339427 GTCTTACCCGGATATAATCTCCACACGTAGTCATCGA
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
68339464 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
68339501 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
68339518 TTTCCAAGTT
Statistics
Matches: 120, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
37 115 0.96
38 5 0.04
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:68339615 original size:48 final size:48
Alignment explanation
Indices: 68339557--68339704 Score: 260
Period size: 48 Copynumber: 3.1 Consensus size: 48
68339547 TGTTACAACA
* *
68339557 TTCACATTAGCCATTCGGCTTTACCACACATAAATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
68339605 TTCACATTAGCCATTCGACTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
68339653 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
68339701 TTCA
1 TTCA
68339705 TATTCATCAC
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 95 1.00
ACGTcount: A:0.34, C:0.27, G:0.06, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:68339759 original size:49 final size:49
Alignment explanation
Indices: 68339700--68339937 Score: 381
Period size: 49 Copynumber: 4.9 Consensus size: 49
68339690 CACACATATG
* *
68339700 TTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * * *
68339749 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--GTATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
68339796 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
68339845 TTTCACATTCATCACATTGGCCATTAGGCCTTACCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
68339894 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
68339938 CATCTCATAC
Statistics
Matches: 176, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 43 0.24
49 133 0.76
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:68339810 original size:96 final size:97
Alignment explanation
Indices: 68339700--68339937 Score: 379
Period size: 96 Copynumber: 2.5 Consensus size: 97
68339690 CACACATATG
* *
68339700 TTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
* * *
68339765 TCGGCCATTAGGCCTTATCAC-GTATATACTC
66 TCGGCCATTAGGCCTTACCACAATATATACAC
* *
68339796 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
68339861 TTGGCCATTAGGCCTTACCACATATATATACAC
66 TCGGCCATTAGGCCTTACCACA-ATATATACAC
*
68339894 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
68339938 CATCTCATAC
Statistics
Matches: 130, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
96 80 0.62
98 50 0.38
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.34
Consensus pattern (97 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTACCACAATATATACAC
Found at i:68371800 original size:25 final size:25
Alignment explanation
Indices: 68371772--68371821 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
68371762 CAGAACATAC
68371772 ATCTCCCTCAATGTAATATTAAGGT
1 ATCTCCCTCAATGTAATATTAAGGT
68371797 ATCTCCCTCAATGTAATATTAAGGT
1 ATCTCCCTCAATGTAATATTAAGGT
68371822 GCAAAGAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (25 bp):
ATCTCCCTCAATGTAATATTAAGGT
Found at i:68373011 original size:7 final size:7
Alignment explanation
Indices: 68373001--68373025 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
68372991 AAAAAATTAA
68373001 AAAATTT
1 AAAATTT
68373008 AAAATTT
1 AAAATTT
68373015 AAAATTT
1 AAAATTT
68373022 AAAA
1 AAAA
68373026 ATCCGACACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (7 bp):
AAAATTT
Found at i:68380797 original size:6 final size:6
Alignment explanation
Indices: 68380786--68380810 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
68380776 GTTGAAACCA
68380786 TTCCTT TTCCTT TTCCTT TTCCTT T
1 TTCCTT TTCCTT TTCCTT TTCCTT T
68380811 ACATAAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
TTCCTT
Found at i:68384769 original size:42 final size:42
Alignment explanation
Indices: 68384707--68384795 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
68384697 TCCTAATTGG
*
68384707 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
*
68384749 GAAAATAGTTCCCTTCTTCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
*
68384791 TAAAA
1 GAAAA
68384796 ATATTCCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.29
Consensus pattern (42 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
Found at i:68384842 original size:19 final size:18
Alignment explanation
Indices: 68384820--68384859 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
68384810 TGAATAAAAC
68384820 TTATCTACCAAAATAAGAT
1 TTATCTACCAAAATAA-AT
*
68384839 TTATCTACCTAAATAAAT
1 TTATCTACCAAAATAAAT
68384857 TTA
1 TTA
68384860 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.38
Consensus pattern (18 bp):
TTATCTACCAAAATAAAT
Found at i:68389482 original size:24 final size:23
Alignment explanation
Indices: 68389438--68389482 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
68389428 TATATCAATG
68389438 AAAGATTTATTGATTAGAAGCGT
1 AAAGATTTATTGATTAGAAGCGT
*
68389461 AAAGAGTTTCTTGAATTA-AAGC
1 AAAGA-TTTATTG-ATTAGAAGC
68389483 AGGGGAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 10 0.53
25 4 0.21
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (23 bp):
AAAGATTTATTGATTAGAAGCGT
Found at i:68392048 original size:28 final size:28
Alignment explanation
Indices: 68391979--68392079 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
68391969 GACAAGATTG
* * * *
68391979 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
68392009 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
68392037 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
68392066 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
68392080 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:68397964 original size:29 final size:29
Alignment explanation
Indices: 68397874--68398033 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
68397864 ACTCGATTTC
* * **
68397874 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
68397903 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
68397931 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
68397961 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68397990 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68398019 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
68398034 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:68405920 original size:29 final size:29
Alignment explanation
Indices: 68405830--68405989 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
68405820 ACTCGATTTC
* * **
68405830 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
68405859 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
68405887 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
68405917 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68405946 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
68405975 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
68405990 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:68411594 original size:21 final size:22
Alignment explanation
Indices: 68411568--68411616 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
68411558 CCTGCAACAT
**
68411568 GGGCGTGT-CCTAGGGTCACAC
1 GGGCGTGTCCCTAGAATCACAC
*
68411589 GGGCGTGTCCCTTGAATCACAC
1 GGGCGTGTCCCTAGAATCACAC
68411611 GGGCGT
1 GGGCGT
68411617 ATGAGCCCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.14, C:0.29, G:0.37, T:0.20
Consensus pattern (22 bp):
GGGCGTGTCCCTAGAATCACAC
Found at i:68413066 original size:77 final size:77
Alignment explanation
Indices: 68412969--68413313 Score: 309
Period size: 77 Copynumber: 4.4 Consensus size: 77
68412959 GACAGGATTG
* * * *
68412969 AATCCCGAAACAAAATTATTTAATTAAATCTTATTTGGAAATAAAACCAAAATAAAATATGTTAA
1 AATCCCGAAATAGAATTATTTAATTAAATCTTGTTTGGAAACAAAACCAAAATAAAATATGTTAA
*
68413034 ACGATGAGAATA
66 ACGAGGAGAATA
* *
68413046 AATTCCGAAATAGAATTATTTAATTAAATCTTGTTTGGAAACAAAACCAAAATTAAATATGTTAA
1 AATCCCGAAATAGAATTATTTAATTAAATCTTGTTTGGAAACAAAACCAAAATAAAATATGTTAA
*
68413111 ACGAGGGGAATA
66 ACGAGGAGAATA
* * ** *
68413123 AATCCCGAAATAGAATTATATAATTAAATTTTCGTTTGGAAACAAAATAAAAATCAAATAAAATC
1 AATCCCGAAATAGAATTATTTAATTAAATCTT-GTTTGGAAAC--AA-AACCA--AAATAAAATA
* *
68413188 TGTTGAATG-GCGAGAATA
60 TGTTAAACGAG-GAGAATA
* * * ** ** *
68413206 AATCCCGAAATAGATTTATTCAATTAATTCTCATTT-GAAACAAAATTAAAATGGAATAAAATCT
1 AATCCCGAAATAGAATTATTTAATTAAATCTTGTTTGGAAACAAAA--CCAA---AATAAAATAT
* * *
68413270 GTTGAATG-GTGGGAATA
61 GTTAAACGAG-GAGAATA
*
68413287 AATCCCGAAATAGAATTATTCAATTAA
1 AATCCCGAAATAGAATTATTTAATTAA
68413314 TTCTCATTTA
Statistics
Matches: 228, Mismatches: 28, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
77 98 0.43
78 13 0.06
79 2 0.01
80 5 0.02
81 59 0.26
82 4 0.02
83 47 0.21
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (77 bp):
AATCCCGAAATAGAATTATTTAATTAAATCTTGTTTGGAAACAAAACCAAAATAAAATATGTTAA
ACGAGGAGAATA
Found at i:68413269 original size:81 final size:82
Alignment explanation
Indices: 68413116--68413474 Score: 413
Period size: 81 Copynumber: 4.4 Consensus size: 82
68413106 GTTAAACGAG
* * * ***
68413116 GGGAATAAATCCCGAAATAGAATTATAT-AATTAAATTTTCGTTTGGAAACAAAATAAAAATCAA
1 GGGAATAAATCCCGAAATAGAATTAT-TCAATT-AATTCTCATTTAGAAACAAAATAAAAAAGGA
* *
68413180 ATAAAATCTGTTGAATGGC
64 ATAAAATCTATTGAATGGA
* * * *
68413199 GAGAATAAATCCCGAAATAGATTTATTCAATTAATTCTCATTT-GAAACAAAATTAAAATGGAAT
1 GGGAATAAATCCCGAAATAGAATTATTCAATTAATTCTCATTTAGAAACAAAATAAAAAAGGAAT
* *
68413263 AAAATCTGTTGAATGGT
66 AAAATCTATTGAATGGA
68413280 GGGAATAAATCCCGAAATAGAATTATTCAATTAATTCTCATTTA-AAA-AAAATAAAAAAGGAAT
1 GGGAATAAATCCCGAAATAGAATTATTCAATTAATTCTCATTTAGAAACAAAATAAAAAAGGAAT
*
68413343 AAAATCTATTGAACTGTA
66 AAAATCTATTGAA-TGGA
* * * ** *
68413361 -GGAATAAATACCGAAACAAAATTATTCAATTAATTCTTGTTTAGAAACAAAATAAAAAAGGAAA
1 GGGAATAAATCCCGAAATAGAATTATTCAATTAATTCTCATTTAGAAACAAAATAAAAAAGGAAT
* *
68413425 AAAATCTATTGAACGAA
66 AAAATCTATTGAATGGA
** *
68413442 GGGAATAACGCCCGAAATAGATTTTATTCAATT
1 GGGAATAAATCCCGAAATAGA-ATTATTCAATT
68413475 TTAATTTTTA
Statistics
Matches: 240, Mismatches: 29, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
80 64 0.27
81 85 0.35
82 53 0.22
83 38 0.16
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.29
Consensus pattern (82 bp):
GGGAATAAATCCCGAAATAGAATTATTCAATTAATTCTCATTTAGAAACAAAATAAAAAAGGAAT
AAAATCTATTGAATGGA
Found at i:68413368 original size:161 final size:164
Alignment explanation
Indices: 68413110--68413474 Score: 425
Period size: 161 Copynumber: 2.2 Consensus size: 164
68413100 AAATATGTTA
* * * *
68413110 AACGAGGGGAATAAATCCCGAAATAGAATTATAT-AATTAAATTTTCGTTTGGAAACAAAATAAA
1 AACGAAGGGAATAAATCCCGAAATAGAATTAT-TCAATTAAATTCTCATTT-GAAAAAAAATAAA
* * * * * * *
68413174 AATCAAATAAAATCTGTTGAATGGCGAGAATAAATCCCGAAATAGATTTATTCAATTAATTCTCA
64 AAACAAATAAAATCTATTGAATGGAGAGAATAAATACCGAAACAAAATTATTCAATTAATTCTCA
* * * *
68413239 TTT-GAAACAAAATTAAAATGGAATAAAATCTGTTG
129 TTTAGAAACAAAATAAAAAAGGAAAAAAATCTATTG
* **
68413274 AATGGTGGGAATAAATCCCGAAATAGAATTATTCAATT-AATTCTCATTT-AAAAAAAATAAAAA
1 AACGAAGGGAATAAATCCCGAAATAGAATTATTCAATTAAATTCTCATTTGAAAAAAAATAAAAA
** * **
68413337 AGGAATAAAATCTATTGAACTGTAG-GAATAAATACCGAAACAAAATTATTCAATTAATTCTTGT
66 ACAAATAAAATCTATTGAA-TGGAGAGAATAAATACCGAAACAAAATTATTCAATTAATTCTCAT
68413401 TTAGAAACAAAATAAAAAAGGAAAAAAATCTATTG
130 TTAGAAACAAAATAAAAAAGGAAAAAAATCTATTG
** *
68413436 AACGAAGGGAATAACGCCCGAAATAGATTTTATTCAATT
1 AACGAAGGGAATAAATCCCGAAATAGA-ATTATTCAATT
68413475 TTAATTTTTA
Statistics
Matches: 169, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
161 63 0.37
162 53 0.31
163 20 0.12
164 33 0.20
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.28
Consensus pattern (164 bp):
AACGAAGGGAATAAATCCCGAAATAGAATTATTCAATTAAATTCTCATTTGAAAAAAAATAAAAA
ACAAATAAAATCTATTGAATGGAGAGAATAAATACCGAAACAAAATTATTCAATTAATTCTCATT
TAGAAACAAAATAAAAAAGGAAAAAAATCTATTG
Found at i:68418928 original size:12 final size:12
Alignment explanation
Indices: 68418911--68418950 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
68418901 CCGTGTGCCC
*
68418911 CACACAGTCTAG
1 CACACAGCCTAG
*
68418923 CACACAGCCTAC
1 CACACAGCCTAG
68418935 CACACAGCCTAG
1 CACACAGCCTAG
68418947 CACA
1 CACA
68418951 TGACTGTGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.35, C:0.42, G:0.12, T:0.10
Consensus pattern (12 bp):
CACACAGCCTAG
Found at i:68425174 original size:18 final size:18
Alignment explanation
Indices: 68425151--68425201 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
68425141 AAAATGTGAG
**
68425151 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTCC
68425169 AAATGATGTTCACATTCC
1 AAATGATGTTCACATTCC
68425187 AAATGATGTTCACAT
1 AAATGATGTTCACAT
68425202 AGATGAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (18 bp):
AAATGATGTTCACATTCC
Found at i:68425721 original size:72 final size:72
Alignment explanation
Indices: 68425627--68425937 Score: 394
Period size: 72 Copynumber: 4.3 Consensus size: 72
68425617 AATACTAAAA
* *
68425627 TAGTTTTATCAATAGTTATTTATGTTTGGTTTTTTGATATTGAATTTATGTTCTACTTATTTATA
1 TAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTATA
68425692 TGTAATC
66 TGTAATC
* * * * *
68425699 TAGTTTTATTAATGGTTGTTTATGTTTGGTTTTTGGATATCGAATTTATATTCTACTTATTTATG
1 TAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTATA
68425764 TGTAATC
66 TGTAATC
* * * * *
68425771 TAGTTTTATCAATAGTTGCTTATGTTTGGTCTTTGGATATTGAATCTATGGTCTAATTATTTATG
1 TAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT-
* **
68425836 CT-TAGGGC
65 ATGTA-ATC
* * * * *
68425844 TAGTTTTATTAATAATTGTTTATGTCTGATTTTTGGATATTAAATTTATGTTCTACTTATTTATA
1 TAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTATA
68425909 CTG-AAT-
66 -TGTAATC
68425915 TAGTTTTATCAATAGTTGTTTAT
1 TAGTTTTATCAATAGTTGTTTAT
68425938 ATATAATTTT
Statistics
Matches: 201, Mismatches: 34, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
71 21 0.10
72 122 0.61
73 58 0.29
ACGTcount: A:0.24, C:0.06, G:0.15, T:0.54
Consensus pattern (72 bp):
TAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTATA
TGTAATC
Found at i:68427294 original size:3 final size:3
Alignment explanation
Indices: 68427288--68427314 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
68427278 AAAGTGGTGG
68427288 TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA
68427315 CAGTGAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:68428850 original size:128 final size:128
Alignment explanation
Indices: 68428622--68428879 Score: 507
Period size: 128 Copynumber: 2.0 Consensus size: 128
68428612 GTAGTTTAGA
68428622 GTGACTCTTCAGGCTGTAATTTTCATTTTTGAGGGGAAGTCACTATTCCATAATTTTTTGTAGTA
1 GTGACTCTTCAGGCTGTAATTTTCATTTTTGAGGGGAAGTCACTATTCCATAATTTTTTGTAGTA
*
68428687 TTCCCTATTTCCATTTGGGTTGTATCTATTACTATTGATGGGATTGCCATGTAATAGTAGTCT
66 TTCCCTATTTCCATTTGGGTTGTATCTATTACTATTGATAGGATTGCCATGTAATAGTAGTCT
68428750 GTGACTCTTCAGGCTGTAATTTTCATTTTTGAGGGGAAGTCACTATTCCATAATTTTTTGTAGTA
1 GTGACTCTTCAGGCTGTAATTTTCATTTTTGAGGGGAAGTCACTATTCCATAATTTTTTGTAGTA
68428815 TTCCCTATTTCCATTTGGGTTGTATCTATTACTATTGATAGGATTGCCATGTAATAGTAGTCT
66 TTCCCTATTTCCATTTGGGTTGTATCTATTACTATTGATAGGATTGCCATGTAATAGTAGTCT
68428878 GT
1 GT
68428880 ACCCACTTCT
Statistics
Matches: 129, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
128 129 1.00
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.44
Consensus pattern (128 bp):
GTGACTCTTCAGGCTGTAATTTTCATTTTTGAGGGGAAGTCACTATTCCATAATTTTTTGTAGTA
TTCCCTATTTCCATTTGGGTTGTATCTATTACTATTGATAGGATTGCCATGTAATAGTAGTCT
Found at i:68430311 original size:25 final size:25
Alignment explanation
Indices: 68430277--68430326 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
68430267 TTCATATGCA
68430277 AGAAGAACATTATCAATAATTAATC
1 AGAAGAACATTATCAATAATTAATC
68430302 AGAAGAACATTATCAATAATTAATC
1 AGAAGAACATTATCAATAATTAATC
68430327 TACCTGGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.28
Consensus pattern (25 bp):
AGAAGAACATTATCAATAATTAATC
Done.