Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 227 of 335
Found at i:68435521 original size:21 final size:20
Alignment explanation
Indices: 68435497--68435548 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
68435487 TTATGCCACA
68435497 TCAGTATTCTTATCCTGAATT
1 TCAGTATT-TTATCCTGAATT
* *
68435518 TCAGGATTTTATCTTGAATT
1 TCAGTATTTTATCCTGAATT
*
68435538 TCAATATTTTA
1 TCAGTATTTTA
68435549 ATTTGAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 20 0.74
21 7 0.26
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAATT
Found at i:68435535 original size:20 final size:20
Alignment explanation
Indices: 68435506--68435558 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
68435496 ATCAGTATTC
* *
68435506 TTATCCTGAATTTCAGGATT
1 TTATCTTGAATTTCAAGATT
*
68435526 TTATCTTGAATTTCAATATT
1 TTATCTTGAATTTCAAGATT
68435546 TTAAT-TTGAATTT
1 TT-ATCTTGAATTT
68435559 GATTTTTTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.53
Consensus pattern (20 bp):
TTATCTTGAATTTCAAGATT
Found at i:68437458 original size:24 final size:23
Alignment explanation
Indices: 68437431--68437476 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
68437421 TGAAATCATT
*
68437431 ATATGTTAA-ATTGTAATGTTAATG
1 ATAT-TTAATATTGAAAT-TTAATG
68437455 ATATTTAATATTGAAATTTAAT
1 ATATTTAATATTGAAATTTAAT
68437477 TATAATATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (23 bp):
ATATTTAATATTGAAATTTAATG
Found at i:68440102 original size:17 final size:17
Alignment explanation
Indices: 68440080--68440129 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
68440070 ACTCGTTAAA
68440080 GCCCGATAAATGA-AAGT
1 GCCCGATAAATGATAA-T
* *
68440097 GCCCGATCAATTATAAT
1 GCCCGATAAATGATAAT
*
68440114 GCCCGACAAATGATAA
1 GCCCGATAAATGATAA
68440130 ATGATGAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 25 0.93
18 2 0.07
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:68441278 original size:24 final size:24
Alignment explanation
Indices: 68441251--68441297 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
68441241 CTGTCAGGGG
**
68441251 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
68441275 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
68441298 GGACATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.38, T:0.23
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:68442284 original size:8 final size:8
Alignment explanation
Indices: 68442271--68442310 Score: 55
Period size: 8 Copynumber: 5.0 Consensus size: 8
68442261 CTAGATCGGC
68442271 AAAAGCCG
1 AAAAGCCG
68442279 AAAAGCCG
1 AAAAGCCG
68442287 AAATA-CCG
1 AAA-AGCCG
*
68442295 AAATGCCG
1 AAAAGCCG
68442303 AAAAGCCG
1 AAAAGCCG
68442311 GTATTTTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 27 0.96
9 1 0.04
ACGTcount: A:0.47, C:0.25, G:0.23, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:68442763 original size:27 final size:29
Alignment explanation
Indices: 68442723--68442823 Score: 109
Period size: 28 Copynumber: 3.6 Consensus size: 29
68442713 AGGAAGCGTC
*
68442723 CTGGTGGCTATGCCACAAAT-TATCTGAT
1 CTGGTGGCTCTGCCACAAATATATCTGAT
* *
68442751 -TGGTGGCTCTGCCACATATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATATCTGAT
* * *
68442779 CTGGTGGCTCTGCCACGATTATATGT-AT
1 CTGGTGGCTCTGCCACAAATATATCTGAT
* *
68442807 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
68442824 TTATCTGTTC
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
27 17 0.28
28 22 0.37
29 21 0.35
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (29 bp):
CTGGTGGCTCTGCCACAAATATATCTGAT
Found at i:68442786 original size:29 final size:28
Alignment explanation
Indices: 68442723--68442836 Score: 119
Period size: 27 Copynumber: 4.1 Consensus size: 28
68442713 AGGAAGCGTC
* * *
68442723 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACATATTATCTGTT
68442751 -TGGTGGCTCTGCCACATATATATCTGTT
1 CTGGTGGCTCTGCCACATAT-TATCTGTT
* *
68442779 CTGGTGGCTCTGCCAC-GATTATATGTAT
1 CTGGTGGCTCTGCCACATATTATCTGT-T
* *
68442807 CTGGTGACTCTGTCAC--ATTATCTGTT
1 CTGGTGGCTCTGCCACATATTATCTGTT
68442833 CTGG
1 CTGG
68442837 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 5 0.07
27 31 0.41
28 24 0.32
29 15 0.20
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACATATTATCTGTT
Found at i:68449589 original size:40 final size:40
Alignment explanation
Indices: 68449508--68449645 Score: 197
Period size: 40 Copynumber: 3.5 Consensus size: 40
68449498 AAACCAAGTA
* * ** * *
68449508 CCTTCGGGATTTAG-CCAGATATAGCTACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATG
*
68449547 CCTTCGGGACTTAGCCCGGATATAGAAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATG
*
68449587 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATG
68449627 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
68449646 TTATCATCCG
Statistics
Matches: 89, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 13 0.15
40 76 0.85
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATG
Found at i:68452134 original size:29 final size:29
Alignment explanation
Indices: 68452100--68452202 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
68452090 TAATCAGCCG
** *
68452100 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
68452129 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
68452158 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
68452187 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68452203 ATCTCTCAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:68460256 original size:28 final size:29
Alignment explanation
Indices: 68460166--68460267 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
68460156 TAATCAGCCG
** * *
68460166 CGCACACTTAGTGCCATATACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTCAAGCT
*
68460195 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCACTTCAAGCT
68460224 CGCACACTTAGTGCCATGCA-TTCAAGCT
1 CGCACACTTAGTGCCATGCACTTCAAGCT
*
68460252 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68460268 ATCTCTCAAC
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 23 0.34
29 44 0.66
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTCAAGCT
Found at i:68464321 original size:40 final size:40
Alignment explanation
Indices: 68464257--68464447 Score: 208
Period size: 39 Copynumber: 4.8 Consensus size: 40
68464247 GCTACTCGTT
* * * ***
68464257 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
68464297 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
68464337 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * *
68464376 CCATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
68464415 CAATTGCCTTTGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
68464448 TTCGCACATT
Statistics
Matches: 134, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 89 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:68464374 original size:39 final size:39
Alignment explanation
Indices: 68464293--68464455 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
68464283 TATGGTAACC
* *
68464293 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
68464333 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
68464372 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
68464411 CGCACAATTGCCTTTGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
68464450 CGCACA
1 CGCACA
68464456 TTCATACACA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 96 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:68472376 original size:39 final size:39
Alignment explanation
Indices: 68472263--68472457 Score: 255
Period size: 39 Copynumber: 4.9 Consensus size: 39
68472253 CTCGTTCAAA
* * *** * *
68472263 TGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAA
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
* *
68472303 TGCCTTCGGGACTTAACCTGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
* * *
68472343 TGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
68472382 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
*
68472421 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
68472458 TTCATACACA
Statistics
Matches: 137, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 96 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
Found at i:68474316 original size:66 final size:67
Alignment explanation
Indices: 68474240--68474374 Score: 245
Period size: 66 Copynumber: 2.0 Consensus size: 67
68474230 CAAGTTTACC
* *
68474240 TAGCAAAACATTAACTAATGGTATTCCTTAGACGAAACAAAACAATCCTCCCTTTTAC-TTTTTA
1 TAGCAAAACATTAACTAATGGTATTCCTTAGAAGAAACAAAACAATCCTCCCTTCTACTTTTTTA
68474304 GA
66 GA
68474306 TAGCAAAACATTAACTAATGGTATTCCTTAGAAGAAACAAAACAATCCTCCCTTCTACTTTTTTA
1 TAGCAAAACATTAACTAATGGTATTCCTTAGAAGAAACAAAACAATCCTCCCTTCTACTTTTTTA
68474371 GA
66 GA
68474373 TA
1 TA
68474375 AAAGTACACC
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
66 56 0.85
67 10 0.15
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (67 bp):
TAGCAAAACATTAACTAATGGTATTCCTTAGAAGAAACAAAACAATCCTCCCTTCTACTTTTTTA
GA
Found at i:68475533 original size:2 final size:2
Alignment explanation
Indices: 68475526--68475550 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
68475516 GTGTGAGACG
68475526 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
68475551 GAGAACCCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:68476017 original size:20 final size:21
Alignment explanation
Indices: 68475992--68476041 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
68475982 TATTCAATTT
68475992 ATATTTTAT-TTTATATATAA
1 ATATTTTATATTTATATATAA
* * *
68476012 ATATTTGTTTATTTATATTTAT
1 ATATTT-TATATTTATATATAA
68476034 ATATTTTA
1 ATATTTTA
68476042 CTCATTATCG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 6 0.25
21 3 0.12
22 15 0.62
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
ATATTTTATATTTATATATAA
Found at i:68476029 original size:22 final size:23
Alignment explanation
Indices: 68475996--68476039 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
68475986 CAATTTATAT
68475996 TTTATTTTATATATAAATATTTG
1 TTTATTTTATATATAAATATTTG
* *
68476019 TTTA-TTTATATTTATATATTT
1 TTTATTTTATATATAAATATTT
68476040 TACTCATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTATTTTATATATAAATATTTG
Found at i:68476038 original size:14 final size:14
Alignment explanation
Indices: 68475988--68476039 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
68475978 AAACTATTCA
68475988 ATTTATAT-TTTAT
1 ATTTATATATTTAT
**
68476001 -TTTATATATAAAT
1 ATTTATATATTTAT
* *
68476014 ATTTGTTTATTTAT
1 ATTTATATATTTAT
68476028 ATTTATATATTT
1 ATTTATATATTT
68476040 TACTCATTAT
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
12 7 0.24
13 3 0.10
14 19 0.66
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (14 bp):
ATTTATATATTTAT
Found at i:68482430 original size:49 final size:50
Alignment explanation
Indices: 68482369--68482600 Score: 272
Period size: 49 Copynumber: 4.7 Consensus size: 50
68482359 TGAGGTCATG
*
68482369 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATTATT-GGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTAGGTCACA
* * ** * * **
68482418 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCAGG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAA-TTAGGTCACA
* * * ** *
68482469 TGTGTAGTACTAAGTGCAGGCTATTACGTGTA-TCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACT-GGATAATTAGGTCACA
*
68482519 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTAGGTCACA
*
68482568 TTTGTAGTACTAAGTGCAGGCTACTATGTGTAC
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
68482601 CAGATAGCTT
Statistics
Matches: 152, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
49 72 0.47
50 44 0.29
51 36 0.24
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTAGGTCACA
Found at i:68482542 original size:101 final size:97
Alignment explanation
Indices: 68482368--68482605 Score: 289
Period size: 101 Copynumber: 2.4 Consensus size: 97
68482358 GTGAGGTCAT
* *
68482368 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATTATTGGTCACATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-AGATGATTGGTCACATGTGTAGTACTAAGT
*
68482433 GTAGGCTACTATGCGTACCCGATAACTTCGATCAG-
65 GCAGGCTACTATGCGTACCCGATAA-TT-GATC-GC
* * * *
68482468 GTGTGTAGTACTAAGTGCAGGCTATTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CAGATGATT-GGTCACATGTGTAGTACTAAG
* ** *
68482533 TGCAGGCTACTATGTGTACTGGATAATTGGTCGC
64 TGCAGGCTACTATGCGTACCCGATAATTGATCGC
* *
68482567 ATTTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT
1 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CAGAT
68482606 AGCTTTGGCT
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
98 1 0.01
99 37 0.31
100 38 0.32
101 43 0.36
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (97 bp):
GTGTGTAGTACTAAGTGCAGGCTACTATGTGTACAGATGATTGGTCACATGTGTAGTACTAAGTG
CAGGCTACTATGCGTACCCGATAATTGATCGC
Found at i:68482936 original size:30 final size:30
Alignment explanation
Indices: 68482879--68482936 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
68482869 TGAAAATTCA
* *
68482879 CAAAAAAATTGTGGAAGTTGAATTAAATTT
1 CAAAAAAATTATGGAAGTTAAATTAAATTT
*
68482909 CAAATAAATTATGGAA-TTAAATATAAAT
1 CAAAAAAATTATGGAAGTTAAAT-TAAAT
68482937 GAGTCTATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.52, C:0.03, G:0.12, T:0.33
Consensus pattern (30 bp):
CAAAAAAATTATGGAAGTTAAATTAAATTT
Found at i:68484679 original size:30 final size:30
Alignment explanation
Indices: 68484645--68484705 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
68484635 TTCCCGAGCC
68484645 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
68484675 TAGGGGCAAAATTGTAATTTTGCTAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
68484705 T
1 T
68484706 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:68485488 original size:68 final size:66
Alignment explanation
Indices: 68485371--68485585 Score: 217
Period size: 64 Copynumber: 3.3 Consensus size: 66
68485361 ATACAGATAG
* * * * *
68485371 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGAC
1 TATGTAGCTAGGTCACATGGATGATACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACAAGAC
68485434 ATTA
64 A-TA
* * **
68485438 TGATGTAGCTAGGTCCCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCT--ATGGGA
1 T-ATGTAGCTAGGTCACATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACAAGACA
68485501 TA
65 TA
* ** * **
68485503 TATATAGCTAGGTCGTATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC--GGGAT
1 TATGTAGCTAGGTCACATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACAAGACAT
68485566 A
66 A
68485567 TATGTAGCTAGGTCACATG
1 TATGTAGCTAGGTCACATG
68485586 CGTGGTTCCA
Statistics
Matches: 127, Mismatches: 16, Indels: 13
0.81 0.10 0.08
Matches are distributed among these distances:
64 73 0.57
65 3 0.02
66 3 0.02
67 2 0.02
68 45 0.35
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (66 bp):
TATGTAGCTAGGTCACATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACAAGACAT
A
Found at i:68485530 original size:64 final size:64
Alignment explanation
Indices: 68485443--68485585 Score: 232
Period size: 64 Copynumber: 2.2 Consensus size: 64
68485433 CATTATGATG
*
68485443 TAGCTAGGTCCCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATATATA
1 TAGCTAGGTCCCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATA
** * *
68485507 TAGCTAGGTCGTATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATG
1 TAGCTAGGTCCCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATA
*
68485571 TAGCTAGGTCACATG
1 TAGCTAGGTCCCATG
68485586 CGTGGTTCCA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 72 1.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (64 bp):
TAGCTAGGTCCCATGGATGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATA
Found at i:68485623 original size:67 final size:65
Alignment explanation
Indices: 68485440--68485657 Score: 219
Period size: 64 Copynumber: 3.4 Consensus size: 65
68485430 AGACATTATG
* * * * * * *
68485440 ATGTAGCTAGGTCCCATGGAT-GATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCACATGGGTGGTTACAATGAGGACACCATGTAGACAAGAGAGCTACGGGATAT
* ** * * * *
68485504 ATATAGCTAGGTCGTATGGGT-GATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCACATGGGTGGTTACAATGAGGACACCATGTAGACAAGAGAGCTACGGGATAT
* * *
68485568 ATGTAGCTAGGTCACATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCACATGGGTGGTTACAA-TG-AGGACACCATGTAGACAAGAGAGCTACGGGAT
*
68485633 AA
64 AT
68485635 ACTG--GCTAGGTCACATGGGTGGT
1 A-TGTAGCTAGGTCACATGGGTGGT
68485658 ACTAAGTATT
Statistics
Matches: 133, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
64 76 0.57
65 4 0.03
66 20 0.15
67 31 0.23
68 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (65 bp):
ATGTAGCTAGGTCACATGGGTGGTTACAATGAGGACACCATGTAGACAAGAGAGCTACGGGATAT
Found at i:68492194 original size:37 final size:37
Alignment explanation
Indices: 68492130--68492205 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
68492120 TTACAAGCCA
68492130 AAATCATTATAAGCCATATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCATATCTCATGGCTA-ATCACAAC
*
68492167 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCATAT-C-TCATGGCTAATCACAAC
68492204 AA
1 AA
68492206 CATCGATCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 4 0.11
37 30 0.86
38 1 0.03
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCATATCTCATGGCTAATCACAAC
Found at i:68495669 original size:14 final size:14
Alignment explanation
Indices: 68495647--68495679 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
68495637 ATTCCCACTA
*
68495647 TCAATGGTCTATTC
1 TCAACGGTCTATTC
68495661 TCAACGGTCTATTC
1 TCAACGGTCTATTC
68495675 TCAAC
1 TCAAC
68495680 ATAAGGACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.36
Consensus pattern (14 bp):
TCAACGGTCTATTC
Found at i:68510010 original size:24 final size:24
Alignment explanation
Indices: 68509670--68510008 Score: 615
Period size: 24 Copynumber: 14.1 Consensus size: 24
68509660 GCAAAGACCA
68509670 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68509694 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68509718 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
68509742 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
68509766 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68509790 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
68509814 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
68509838 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
68509862 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68509886 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
68509910 TATGGCACTATGTGTACGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68509934 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
68509958 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
68509982 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
68510006 TAT
1 TAT
68510009 AGTCACATTC
Statistics
Matches: 307, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 307 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:68516273 original size:40 final size:40
Alignment explanation
Indices: 68516228--68516394 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
68516218 CGGAATATAA
68516228 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
68516268 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
68516308 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68516348 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
68516387 CCGGATAT
1 CCGGATAT
68516395 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68516378 original size:80 final size:79
Alignment explanation
Indices: 68516228--68516394 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
68516218 CGGAATATAA
* *
68516228 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
68516293 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
68516308 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
68516370 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
68516387 CCGGATAT
1 CCGGATAT
68516395 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:68517243 original size:17 final size:19
Alignment explanation
Indices: 68517220--68517265 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
68517210 AAGAAGCATG
68517220 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
68517238 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
68517256 AATCATGCTC
1 AATCATGCTC
68517266 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:68524245 original size:40 final size:40
Alignment explanation
Indices: 68524200--68524366 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
68524190 CGGAATATAA
68524200 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
68524240 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
68524280 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68524320 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
68524359 CCGGATAT
1 CCGGATAT
68524367 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68524350 original size:80 final size:79
Alignment explanation
Indices: 68524200--68524366 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
68524190 CGGAATATAA
* *
68524200 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
68524265 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
68524280 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
68524342 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
68524359 CCGGATAT
1 CCGGATAT
68524367 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:68525214 original size:17 final size:19
Alignment explanation
Indices: 68525191--68525236 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
68525181 AAGAAGCATG
68525191 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
68525209 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
68525227 AATCATGCTC
1 AATCATGCTC
68525237 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:68529282 original size:24 final size:24
Alignment explanation
Indices: 68528966--68529280 Score: 567
Period size: 24 Copynumber: 13.1 Consensus size: 24
68528956 GCAAAGACCA
68528966 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68528990 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68529014 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
68529038 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
68529062 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68529086 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
68529110 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
68529134 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
68529158 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
68529182 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
68529206 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
68529230 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
68529254 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
68529278 TAT
1 TAT
68529281 AGTCACATTC
Statistics
Matches: 285, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 285 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:68539558 original size:2 final size:2
Alignment explanation
Indices: 68539551--68539594 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
68539541 TCAACACATC
68539551 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68539593 TA
1 TA
68539595 ACTGGTTAAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:68541888 original size:21 final size:20
Alignment explanation
Indices: 68541854--68541892 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
68541844 AAACTTTTAT
68541854 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAAC-TTCATA
* *
68541875 ATCTATTAAGAAACTTCA
1 ATCTATCAACAAACTTCA
68541893 AAATATGCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.31
Consensus pattern (20 bp):
ATCTATCAACAAACTTCATA
Found at i:68548427 original size:143 final size:141
Alignment explanation
Indices: 68548219--68548513 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
68548209 TGAGTTAAAT
*
68548219 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
68548284 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
68548349 GTGTGCATGAGTA
129 GTGTGCATGAGTA
68548362 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
68548427 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
68548492 GTGCATGAGTA
131 GTGCATGAGTA
68548503 TTCGGCCATGC
1 TTCGGCCATGC
68548514 TATAGAATTT
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 122 0.81
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:68549192 original size:29 final size:29
Alignment explanation
Indices: 68549159--68549287 Score: 159
Period size: 29 Copynumber: 4.4 Consensus size: 29
68549149 ACGAGATTGA
*
68549159 CACTAAGTGTGCGTGCTGGAAATATATGG
1 CACTAAGTGTGCGTGCTGGAAAAATATGG
* *
68549188 CACTAAGTGTGCGTGCTGGAAATATAAGG
1 CACTAAGTGTGCGTGCTGGAAAAATATGG
* *
68549217 CACTAAGTGTGCATGCTGGAAAAATATGA
1 CACTAAGTGTGCGTGCTGGAAAAATATGG
* ** *
68549246 CACTATGTGTGCAAGCTGGAAAAATACGG
1 CACTAAGTGTGCGTGCTGGAAAAATATGG
**
68549275 CACTGGGTGTGCG
1 CACTAAGTGTGCG
68549288 AGCTCGAAGG
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 88 1.00
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (29 bp):
CACTAAGTGTGCGTGCTGGAAAAATATGG
Found at i:68555517 original size:143 final size:141
Alignment explanation
Indices: 68555309--68555603 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
68555299 TGAGTTAAAT
*
68555309 TTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
68555374 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTGT
68555439 GTGTGCATGAGTA
129 GTGTGCATGAGTA
68555452 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
1 TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
68555517 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
66 GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
68555582 GTGCATGAGTA
131 GTGCATGAGTA
68555593 TTCGGCCATGC
1 TTCGGCCATGC
68555604 TATAGAATTT
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 122 0.81
ACGTcount: A:0.21, C:0.11, G:0.29, T:0.39
Consensus pattern (141 bp):
TTCGGCCATGCATGTTGTCTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGAT
GAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTGT
GTGCATGAGTA
Found at i:68556280 original size:29 final size:29
Alignment explanation
Indices: 68556247--68556348 Score: 159
Period size: 29 Copynumber: 3.5 Consensus size: 29
68556237 GTGACGAGAT
68556247 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
68556276 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
68556305 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* *
68556334 TGACACTATGTGTGC
1 TGGCACTAAGTGTGC
68556349 AAGCTGAAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 67 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:68556349 original size:29 final size:29
Alignment explanation
Indices: 68556247--68556368 Score: 156
Period size: 29 Copynumber: 4.2 Consensus size: 29
68556237 GTGACGAGAT
* *
68556247 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* *
68556276 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
68556305 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
* * *
68556334 TGACACTATGTGTGCAAGCT-GAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
68556362 CGGCACT
1 TGGCACT
68556369 GGGTGTGCGA
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 13 0.15
29 71 0.85
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:68564911 original size:14 final size:13
Alignment explanation
Indices: 68564892--68564930 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
68564882 GATATTTGAC
*
68564892 ATATAAAAAATTAT
1 ATATAAAAAA-AAT
68564906 ATATAAAGAAAAAT
1 ATATAAA-AAAAAT
68564920 ATATAAAAAAA
1 ATATAAAAAAA
68564931 TTAGTTGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 4 0.17
14 16 0.70
15 3 0.13
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (13 bp):
ATATAAAAAAAAT
Found at i:68566831 original size:48 final size:48
Alignment explanation
Indices: 68566760--68566946 Score: 286
Period size: 48 Copynumber: 3.9 Consensus size: 48
68566750 CACAGTGGTT
*
68566760 TATGTGAGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCGTTGA
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA
* *
68566808 TATGTGAG-TCAGTGTAAGACCATGTCTGAGACATGGCATCGACGTTGA
1 TATGTGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA
* *
68566856 TATGTGAGCCAGTGTAAGGCCATGTCTGGGACATGGCATCGGCGTTGA
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA
* * *
68566904 TATATGTGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGC
1 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
68566947 ACTGACATGA
Statistics
Matches: 125, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
47 1 0.01
48 124 0.99
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (48 bp):
TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA
Found at i:68567037 original size:48 final size:48
Alignment explanation
Indices: 68566760--68567030 Score: 254
Period size: 48 Copynumber: 5.8 Consensus size: 48
68566750 CACAGTGGTT
* * * *
68566760 TATGTGAGCTAGTGTAAGACCATGTATGGGACATGGCATCGGCGTTGA
1 TATGTGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * *
68566808 TATGTGAGT-CAGTGTAAGACCATGTCTGAGACATGGCATCGACGTTGA
1 TATGTGA-TCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * *
68566856 TATGTGAGCCAGTGTAAGGCCATGTCTGGGACATGGCATCGGCGTTGA
1 TATGTGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * *
68566904 TATATG-TGCTAGTGTAAGACCATGTCCGGGACATGGCATCGGCACTGA
1 TATGTGAT-CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * * * * *
68566952 CATGAGACTTC-GTATAAGACCATATCCGGGATATGGCATC-G-A-T-A
1 TATGTGA-TCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
*
68566996 TGTG-GATCCA-TGTAAGACCATGTCTGGGACATGGC
1 TATGTGATCCAGTGTAAGACCATGTCTGGGACATGGC
68567031 TTTGGCACTC
Statistics
Matches: 186, Mismatches: 31, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
42 23 0.12
43 2 0.01
44 3 0.02
45 1 0.01
46 1 0.01
47 1 0.01
48 154 0.83
50 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
TATGTGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
Found at i:68568220 original size:21 final size:21
Alignment explanation
Indices: 68568183--68568222 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
68568173 AATCATTAAA
*
68568183 TTGATGTTATGATATGTGTCT
1 TTGATGTTATGAAATGTGTCT
68568204 TTGATGTGTAT-AAATGTGT
1 TTGATGT-TATGAAATGTGT
68568223 GAGTGGTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.23, C:0.03, G:0.25, T:0.50
Consensus pattern (21 bp):
TTGATGTTATGAAATGTGTCT
Found at i:68575404 original size:40 final size:40
Alignment explanation
Indices: 68575319--68575469 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
68575309 AATTGAATGA
* * *
68575319 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
68575359 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
68575400 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
68575439 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
68575470 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:68575483 original size:40 final size:40
Alignment explanation
Indices: 68575356--68575485 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
68575346 ATGCTGGAAA
* * * *
68575356 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
68575396 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
68575436 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
68575476 TTATATCCGG
1 TTATATCCGG
68575486 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:68583387 original size:40 final size:40
Alignment explanation
Indices: 68583302--68583452 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
68583292 AATTGAATGA
* * *
68583302 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
68583342 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
68583383 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
68583422 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
68583453 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:68583466 original size:40 final size:40
Alignment explanation
Indices: 68583339--68583468 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
68583329 ATGCTGGAAA
* * * *
68583339 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
68583379 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
68583419 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
68583459 TTATATCCGG
1 TTATATCCGG
68583469 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:68591330 original size:40 final size:40
Alignment explanation
Indices: 68591265--68591414 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
68591255 AAATTGAATG
* *
68591265 ATATCCGGGCT-A-ACCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
68591303 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
68591343 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
68591383 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
68591415 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
38 10 0.11
39 4 0.04
40 73 0.82
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:68591428 original size:40 final size:40
Alignment explanation
Indices: 68591301--68591430 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
68591291 ATGCTGGAAA
* * * *
68591301 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
68591341 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
68591381 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
68591421 TTATATCCGG
1 TTATATCCGG
68591431 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:68594823 original size:124 final size:123
Alignment explanation
Indices: 68594602--68594825 Score: 297
Period size: 124 Copynumber: 1.8 Consensus size: 123
68594592 GAATTATGTG
* * * * * * * *
68594602 AAATGAAGTATGGATGTGTATTGATTATTGATTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AAATGAAATATGAATGTCTAATGATTATTGATCATGTGTGCATGAGCAATTGAATGATACCCGGG
* * * **
68594667 CTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTTGAGCCTTAGTAATGA
66 CTAAATCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAATGA
*
68594725 AAATGAAATATGAATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGAT-CATGTGTGCATGAGCAATTGAATGATACCCGG
68594790 GCTAAATCCCGAAGACG-TTAATGCTGGAAATTATAT
65 GCTAAATCCCGAAGACGATT-ATGCTGGAAATTATAT
68594826 CCGGGTTAAG
Statistics
Matches: 85, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
123 30 0.35
124 55 0.65
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGAATGTCTAATGATTATTGATCATGTGTGCATGAGCAATTGAATGATACCCGGG
CTAAATCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTTGAGCCTTAGTAATGA
Found at i:68594947 original size:40 final size:40
Alignment explanation
Indices: 68594820--68594949 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
68594810 ATGCTGGAAA
* * *
68594820 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
68594860 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
68594900 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
68594940 TTATATCCGG
1 TTATATCCGG
68594950 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:68597632 original size:42 final size:43
Alignment explanation
Indices: 68597532--68597688 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 43
68597522 AGCTCGTACA
*
68597532 ATGCCAA-CGTCCCAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAATC-TCCCAGACATGGTTTTACATGTAATCAAATATCG
*** ** * *
68597575 ATGCTTTTGACCCAGACAGGGTTTTACATGAAATCAAATA-CG
1 ATGCCAATCTCCCAGACATGGTTTTACATGTAATCAAATATCG
* * *
68597617 ATGCCAATCTCCCAGACATGTTTTTACATGTAATCTCAATATTG
1 ATGCCAATCTCCCAGACATGGTTTTACATGTAATC-AAATATCG
* * *
68597661 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAATCTCCCAGACATGGTTTTACA
68597689 CGAAAACACG
Statistics
Matches: 89, Mismatches: 22, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
42 29 0.33
43 35 0.39
44 25 0.28
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (43 bp):
ATGCCAATCTCCCAGACATGGTTTTACATGTAATCAAATATCG
Found at i:68605619 original size:44 final size:43
Alignment explanation
Indices: 68605486--68605631 Score: 195
Period size: 42 Copynumber: 3.4 Consensus size: 43
68605476 GCCAACTCCT
* * *
68605486 AGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCC
1 AGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCC
* * * *
68605529 AGATAGGGTCTTACACGAAATCAAATA-CGATGCCAATGTCCT
1 AGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCC
* *
68605571 AGACATGGTCTTACACGTAATCTCAATATCGATGCCAATTTCCC
1 AGACATGGTCTTACACGTAATC-AAATATCGATGCCAATGTCCC
68605615 AGACATGGTCTTACACG
1 AGACATGGTCTTACACG
68605632 AAAACATATA
Statistics
Matches: 88, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
42 32 0.36
43 26 0.30
44 30 0.34
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (43 bp):
AGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCC
Found at i:68605626 original size:86 final size:84
Alignment explanation
Indices: 68605474--68605634 Score: 232
Period size: 86 Copynumber: 1.9 Consensus size: 84
68605464 AGCTCCTACA
* * * *
68605474 ATGCCAACTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGTC
1 ATGCCAACTCCTAGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGACAGGGTC
68605539 TTACACGAAATCAAATACG
66 TTACACGAAATCAAATACG
* * * *
68605558 ATGCCAATGTCCTAGACATGGTCTTACACGTAATCTCAATATCGATGCCAATTTCCCAGACATGG
1 ATGCCAA-CTCCTAGACATGGTCTTACACGTAATC-AAATATCGATGCCAATGTCCCAGACAGGG
68605623 TCTTACACGAAA
64 TCTTACACGAAA
68605635 ACATATATTG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
84 7 0.10
85 24 0.36
86 36 0.54
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (84 bp):
ATGCCAACTCCTAGACATGGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGACAGGGTC
TTACACGAAATCAAATACG
Found at i:68608010 original size:24 final size:23
Alignment explanation
Indices: 68607931--68608011 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 23
68607921 GTCGATAACG
*
68607931 AAGAGGAAAAAGAAAAGAGA-GAA
1 AAGAGGAAAAAGAAAA-AAATGAA
**
68607954 TAAGAATAAAAATGAAAAAAATAAGAA
1 -AAGAGGAAAAA-GAAAAAAAT--GAA
68607981 AA-AGGAAAAAGAAAGAAAATGAA
1 AAGAGGAAAAAGAAA-AAAATGAA
68608004 AAGAGGAA
1 AAGAGGAA
68608012 GAAAAGAAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
23 5 0.11
24 20 0.43
25 16 0.35
26 2 0.04
27 3 0.07
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (23 bp):
AAGAGGAAAAAGAAAAAAATGAA
Found at i:68608013 original size:17 final size:16
Alignment explanation
Indices: 68607939--68608017 Score: 52
Period size: 17 Copynumber: 4.6 Consensus size: 16
68607929 CGAAGAGGAA
68607939 AAAGAAAAGAGAGAATAAG
1 AAAGAAAAG-GA-AA-AAG
* *
68607958 AATA-AAAATGAAAAAA
1 AA-AGAAAAGGAAAAAG
68607974 ATAAGAAAAAGGAAAAAG
1 A-AAG-AAAAGGAAAAAG
*
68607992 AAAGAAAATGAAAAGAG
1 AAAGAAAAGGAAAA-AG
*
68608009 GAAGAAAAG
1 AAAGAAAAG
68608018 AAGAACATCT
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
16 13 0.27
17 15 0.31
18 13 0.27
19 6 0.12
20 1 0.02
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (16 bp):
AAAGAAAAGGAAAAAG
Found at i:68608014 original size:34 final size:36
Alignment explanation
Indices: 68607940--68608022 Score: 93
Period size: 34 Copynumber: 2.4 Consensus size: 36
68607930 GAAGAGGAAA
* *
68607940 AAGAAAAGAGAGAATAAGAATAAAAATGAAAAAAAT
1 AAGAAAAGAGAGAAAAAGAATAAAAATGAAAAAAAG
* *
68607976 AAGAAAA-AG-GAAAAAGAA-AGAAAATGAAAAGAGG
1 AAGAAAAGAGAGAAAAAGAATA-AAAATGAAAAAAAG
68608010 AAGAAAAGA-AGAA
1 AAGAAAAGAGAGAA
68608023 CATCTAATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
33 1 0.03
34 26 0.65
35 6 0.15
36 7 0.17
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (36 bp):
AAGAAAAGAGAGAAAAAGAATAAAAATGAAAAAAAG
Found at i:68613230 original size:5 final size:5
Alignment explanation
Indices: 68613212--68613257 Score: 78
Period size: 5 Copynumber: 9.6 Consensus size: 5
68613202 AGTGATAATA
68613212 ATTA- ATTA- ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATT
68613258 TTTATTATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
4 8 0.20
5 33 0.80
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:68617683 original size:15 final size:16
Alignment explanation
Indices: 68617661--68617703 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
68617651 TTTAGTATGT
68617661 ATGATATGCATATG-AC
1 ATGATATGC-TATGCAC
68617677 ATG-TATGCTATGCAC
1 ATGATATGCTATGCAC
68617692 ATGATATG-TATG
1 ATGATATGCTATG
68617704 ATATGCACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.16
15 14 0.56
16 7 0.28
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGATATGCTATGCAC
Found at i:68617716 original size:20 final size:20
Alignment explanation
Indices: 68617656--68617716 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
68617646 GGGATTTTAG
*
68617656 TATGTATGATATGCATATGA
1 TATGTATGATATGCACATGA
* *
68617676 CATGTATGCTATGCACATGA
1 TATGTATGATATGCACATGA
68617696 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
68617716 T
1 T
68617717 GTATTCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:68617849 original size:24 final size:24
Alignment explanation
Indices: 68617765--68617896 Score: 194
Period size: 25 Copynumber: 5.4 Consensus size: 24
68617755 GGAGGAAGTG
*
68617765 TAAAAGGGCTTATGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
68617789 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
*
68617814 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
68617839 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
68617863 TAAAAGGGCTT-TGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
68617886 TAAAAGAGGCT
1 TAAAAG-GGCT
68617897 AGGCCTCTAG
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
23 17 0.17
24 38 0.37
25 47 0.46
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:68617861 original size:49 final size:48
Alignment explanation
Indices: 68617766--68617896 Score: 201
Period size: 49 Copynumber: 2.7 Consensus size: 48
68617756 GAGGAAGTGT
*
68617766 AAAAGGGCTTATGCCCTAGTTATGATAAAGGGCTTATGCCCCAGTTATG
1 AAAAGGGCTTATGCCCTAGTTATTA-AAAGGGCTTATGCCCCAGTTATG
* *
68617815 ATAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 A-AAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTATGCCCCAGTTATG
68617864 AAAAGGGCTT-TGCCCTAGTTATTAAAAGAGGCT
1 AAAAGGGCTTATGCCCTAGTTATTAAAAG-GGCT
68617897 AGGCCTCTAG
Statistics
Matches: 76, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
47 17 0.22
48 13 0.17
49 24 0.32
50 22 0.29
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTATGCCCCAGTTATG
Found at i:68618138 original size:31 final size:31
Alignment explanation
Indices: 68618103--68618162 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
68618093 TGTTTACAGT
68618103 AAAGGCTTCGGCCCAGTAATATGAAATATTA
1 AAAGGCTTCGGCCCAGTAATATGAAATATTA
* **
68618134 AAAGGCTTTGGCCCAGTGTTATGAAATAT
1 AAAGGCTTCGGCCCAGTAATATGAAATAT
68618163 GAAGTGTGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATTA
Found at i:68625842 original size:20 final size:20
Alignment explanation
Indices: 68625776--68625842 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
68625766 ATTTTAGTAA
*
68625776 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
68625796 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
68625816 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
68625836 ACATGAT
1 ACATGAT
68625843 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:68625925 original size:24 final size:24
Alignment explanation
Indices: 68625897--68626042 Score: 147
Period size: 23 Copynumber: 6.0 Consensus size: 24
68625887 AGTGAAAAAG
68625897 GGCTTATGCCCCAGTTATGATAAA
1 GGCTTATGCCCCAGTTATGATAAA
68625921 GGCTTATGCCCCAGTTATGATAAA
1 GGCTTATGCCCCAGTTATGATAAA
* *
68625945 GGGCTTATGCCCTAGTT-TTA-AAA
1 -GGCTTATGCCCCAGTTATGATAAA
* *
68625968 GGGCTTATGCCCCAGTTATTAAAAA
1 -GGCTTATGCCCCAGTTATGATAAA
* * *
68625993 GGCTT-TGCCGCAGTTATTAAAAA
1 GGCTTATGCCCCAGTTATGATAAA
*
68626016 GGC-TAGGCCTCCAGTTATATGATAAA
1 GGCTTATGCC-CCAG-T-TATGATAAA
68626042 G
1 G
68626043 CAGCTATGCT
Statistics
Matches: 107, Mismatches: 8, Indels: 12
0.84 0.06 0.09
Matches are distributed among these distances:
22 1 0.01
23 42 0.39
24 37 0.35
25 19 0.18
26 8 0.07
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (24 bp):
GGCTTATGCCCCAGTTATGATAAA
Found at i:68625972 original size:23 final size:24
Alignment explanation
Indices: 68625892--68626033 Score: 166
Period size: 24 Copynumber: 6.0 Consensus size: 24
68625882 GAGGAAGTGA
*
68625892 AAAAGGGCTTATGCCCCAGTTATG
1 AAAAGGGCTTATGCCCCAGTTATT
*
68625916 ATAAA-GGCTTATGCCCCAGTTATG
1 A-AAAGGGCTTATGCCCCAGTTATT
*
68625940 ATAAAGGGCTTATGCCCTAGTT-TT
1 A-AAAGGGCTTATGCCCCAGTTATT
68625964 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
68625988 AAAAAGGCTT-TGCCGCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
68626011 AAAAAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCC-CCAGTTAT
68626034 ATGATAAAGC
Statistics
Matches: 106, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
22 1 0.01
23 42 0.40
24 45 0.42
25 18 0.17
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:68626262 original size:31 final size:31
Alignment explanation
Indices: 68626227--68626289 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
68626217 CGTTTACAGT
*
68626227 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGATTCGGCCCAGTAATATGAAATATGA
* **
68626258 AAAGGATTTGGCCCAGTGTTATGAAATATGA
1 AAAGGATTCGGCCCAGTAATATGAAATATGA
68626289 A
1 A
68626290 GTGTGAAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAGGATTCGGCCCAGTAATATGAAATATGA
Found at i:68640287 original size:61 final size:61
Alignment explanation
Indices: 68640216--68640332 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 61
68640206 ATTTTTAAAA
* * * * * * * **
68640216 TTTTAGAATCAAGACCAAATTTATAAATTGTGTAAACATTGAGGGTTAAATTTGTTGAAAT
1 TTTTAAAATCAACACCAAATTAAAAAAATGGGTAAACATTAAGGGCCAAATTTGTTGAAAT
*
68640277 TTTTAAAATCAACACTAAATTAAAAAAATGGGTAAACATTAAGGGCCAAATTTGTT
1 TTTTAAAATCAACACCAAATTAAAAAAATGGGTAAACATTAAGGGCCAAATTTGTT
68640333 ATTAGACCAA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.34
Consensus pattern (61 bp):
TTTTAAAATCAACACCAAATTAAAAAAATGGGTAAACATTAAGGGCCAAATTTGTTGAAAT
Found at i:68644077 original size:82 final size:82
Alignment explanation
Indices: 68643922--68644083 Score: 211
Period size: 82 Copynumber: 2.0 Consensus size: 82
68643912 ATTGTATGAG
* * * * *
68643922 AAATGTATGTTCGATTGTATAATAAGTCCGGTAATGTTCTGTAACCCTATTCTGGCAATGGATAC
1 AAATATATGTTCGATTATATAATAAGTCCGGTAATGTTCTGTAACCCTATTCTAGCAACGAATAC
*
68643987 GGGTGAGGGGTGTTACT
66 GGGCGAGGGGTGTTACT
* *
68644004 AAATATATGTTCGATTATATAATAAGGT-TGGTAATGCTT-TGTAACCCTATTCTAGTAACGAAT
1 AAATATATGTTCGATTATATAATAA-GTCCGGTAATG-TTCTGTAACCCTATTCTAGCAACGAAT
*
68644067 ATGGGCGAGGGGTGTTA
64 ACGGGCGAGGGGTGTTA
68644084 TATTTATTGG
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
82 65 0.94
83 4 0.06
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (82 bp):
AAATATATGTTCGATTATATAATAAGTCCGGTAATGTTCTGTAACCCTATTCTAGCAACGAATAC
GGGCGAGGGGTGTTACT
Found at i:68646744 original size:27 final size:27
Alignment explanation
Indices: 68646706--68646760 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
68646696 GTATCTGAAG
68646706 TTAGAAGTTTTTTTAGGATTAGTTGGC
1 TTAGAAGTTTTTTTAGGATTAGTTGGC
*
68646733 TTAGAAGTTTTTTTGGGATTAGTTGGC
1 TTAGAAGTTTTTTTAGGATTAGTTGGC
68646760 T
1 T
68646761 ATTATCGGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.20, C:0.04, G:0.27, T:0.49
Consensus pattern (27 bp):
TTAGAAGTTTTTTTAGGATTAGTTGGC
Found at i:68649228 original size:29 final size:28
Alignment explanation
Indices: 68649166--68649228 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
68649156 TTGCATGACT
* * * *
68649166 ATGAATGTGATTGGGCCTGATGGGCCAT
1 ATGAATGAGATTGGGCCTAAAGGGCCAA
68649194 ATGAATGAGATTGGGCCTAAAAGGGCCAA
1 ATGAATGAGATTGGGCCT-AAAGGGCCAA
68649223 ATGAAT
1 ATGAAT
68649229 AAGTATGGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 17 0.57
29 13 0.43
ACGTcount: A:0.32, C:0.13, G:0.32, T:0.24
Consensus pattern (28 bp):
ATGAATGAGATTGGGCCTAAAGGGCCAA
Found at i:68656298 original size:21 final size:21
Alignment explanation
Indices: 68656264--68656303 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
68656254 AATGGTTATG
*
68656264 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
**
68656285 GATGATTTGCGAGTCACTT
1 GATGATTTAAGAGTCACTT
68656304 GTGTTTAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:68656581 original size:16 final size:16
Alignment explanation
Indices: 68656560--68656595 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
68656550 GACAAATCCC
68656560 GAAATACCGAAAAGCT
1 GAAATACCGAAAAGCT
68656576 GAAATACCGAAAAGCT
1 GAAATACCGAAAAGCT
68656592 GAAA
1 GAAA
68656596 GTTTGGCTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.53, C:0.17, G:0.19, T:0.11
Consensus pattern (16 bp):
GAAATACCGAAAAGCT
Found at i:68656840 original size:28 final size:28
Alignment explanation
Indices: 68656807--68656881 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 28
68656797 ATTGCATGAC
68656807 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
* *
68656835 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
**
68656863 TATGAATGAAATTGGGCCT
1 TATGAATGTGATTGGGCCT
68656882 AAAGGGGCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGACGGGCCA
Found at i:68658172 original size:17 final size:18
Alignment explanation
Indices: 68658139--68658172 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68658129 TTTAAGGAAG
68658139 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
68658157 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
68658173 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:68661954 original size:39 final size:39
Alignment explanation
Indices: 68661879--68662139 Score: 441
Period size: 39 Copynumber: 6.7 Consensus size: 39
68661869 CCGCACAAAG
*
68661879 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
68661919 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
68661958 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
68661997 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
* * *
68662036 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
68662075 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
68662114 GCCTTCGGGCTTAGCCCAGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
68662140 TCGAACATTC
Statistics
Matches: 207, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
39 198 0.96
40 9 0.04
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:68662039 original size:117 final size:117
Alignment explanation
Indices: 68661879--68662139 Score: 495
Period size: 117 Copynumber: 2.2 Consensus size: 117
68661869 CCGCACAAAG
*
68661879 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
68661944 TAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
65 TAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
68661997 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAT
68662062 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
66 AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
68662114 GCCTTCGGGCTTAGCCCAGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
68662140 TCGAACATTC
Statistics
Matches: 141, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
117 132 0.94
118 9 0.06
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (117 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAT
AACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:68670099 original size:39 final size:39
Alignment explanation
Indices: 68670015--68670167 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
68670005 TATGGTAACC
** * *
68670015 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
68670055 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
68670094 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
68670133 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
68670168 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:68670140 original size:78 final size:79
Alignment explanation
Indices: 68669984--68670166 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
68669974 TCGTTCAAAC
* * **
68669984 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
68670049 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
68670064 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
68670128 CAATTTGCACAATT
66 CAATTTGCACAATT
68670142 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
68670167 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:68674480 original size:17 final size:17
Alignment explanation
Indices: 68674458--68674493 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
68674448 CGAACAAACA
68674458 CTAAGGCGCGTTCCTAG
1 CTAAGGCGCGTTCCTAG
*
68674475 CTAAGGCGTGTTCCTAG
1 CTAAGGCGCGTTCCTAG
68674492 CT
1 CT
68674494 TGGTCCCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.28
Consensus pattern (17 bp):
CTAAGGCGCGTTCCTAG
Found at i:68677331 original size:40 final size:40
Alignment explanation
Indices: 68677285--68677509 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
68677275 CTTGCACAAG
* * * *
68677285 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
68677325 TCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
68677365 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
68677405 GCCTTCGGGTCTTAGCCTGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-GCTAGCACAAAT
* * * * * *
68677445 GCCTTCGGATTTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-GCTAGCACAAAT
* *
68677486 GCCTTCGGGACTTAGCCCAGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
68677510 CATTCGAATA
Statistics
Matches: 152, Mismatches: 31, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 123 0.81
41 28 0.18
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:68677380 original size:80 final size:80
Alignment explanation
Indices: 68677249--68677509 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
68677239 CTCAAGTAAT
* * * * * * * *
68677249 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAGT
* *
68677312 CACTAGCATAAATTC
66 CACTAGCACAAATGC
* *
68677327 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAG
*
68677391 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
68677407 CTTCGGGTCTTAGCCTGGATATAGCAACTCGCACGAATGCCTTCGGATTTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAGT
*
68677472 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
*
68677488 CTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATAT
68677510 CATTCGAATA
Statistics
Matches: 152, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.11
80 93 0.61
81 31 0.20
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:68677470 original size:120 final size:120
Alignment explanation
Indices: 68677249--68677509 Score: 289
Period size: 120 Copynumber: 2.2 Consensus size: 120
68677239 CTCAAGTAAT
* * *
68677249 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATGTGGTC
1 CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTC
* * * *
68677313 ACTAGCATAAATTCCTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGC
66 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
* * * *
68677367 CTTCGGGTTTTAGCCCGGATATAA-TCGCTAGCACAAATGCCTTCGGGTCTTAGCCTGGATATAG
1 CTTCGGGATTTAGCCCGGATATAACT-ACTAGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATAG
* * * * *
68677431 -CAACTCGCACGAATGCCTTC-GGATTTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
64 TC-ACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGTCACCTAGCACAAAAGC
* *
68677488 CTTCGGGACTTAGCCCAGATAT
1 CTTCGGGATTTAGCCCGGATAT
68677510 CATTCGAATA
Statistics
Matches: 118, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
118 13 0.11
119 20 0.17
120 54 0.46
121 31 0.26
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (120 bp):
CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
Found at i:68685465 original size:40 final size:40
Alignment explanation
Indices: 68685419--68685641 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
68685409 CTTGCACAAG
* * *
68685419 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
68685459 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
68685499 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
68685539 GCCTTCGGGTCTTAG-CCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
68685578 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
68685619 GCCTTCGGGACTTAGCCC-GATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
68685642 CATTCGAATA
Statistics
Matches: 157, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.20
40 100 0.64
41 24 0.15
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:68685514 original size:80 final size:80
Alignment explanation
Indices: 68685383--68685641 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
68685373 CTCAAGTAAT
* * * * * * *
68685383 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
68685446 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
68685461 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
68685525 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
68685541 CTTCGGGTCTTAG-CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
68685605 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
68685621 CTTCGGGACTTAGCCC-GATAT
1 CTTCGGGACTTAGCCCGGATAT
68685642 CATTCGAATA
Statistics
Matches: 152, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
78 13 0.09
79 57 0.38
80 80 0.53
81 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:68685641 original size:119 final size:118
Alignment explanation
Indices: 68685383--68685641 Score: 301
Period size: 119 Copynumber: 2.2 Consensus size: 118
68685373 CTCAAGTAAT
* * * *
68685383 CTTCGGGATTTAGCCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATGTGGTCA
1 CTTCGGGATTTAGCCCGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTCA
* * *
68685448 CTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
66 CTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCCCTAGCACAAAAGC
* * *
68685501 CTTCGGGTTTTAGCCCGGATATAA-TCGCTAGCACAAATGCCTTCGGGTCTTAG-CCGGATATAG
1 CTTCGGGATTTAGCCC-GATATAACT-ACTAGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATAG
* * * *
68685564 -CAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
63 TC-ACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGTC-CCTAGCACAAAAGC
*
68685621 CTTCGGGACTTAGCCCGATAT
1 CTTCGGGATTTAGCCCGATAT
68685642 CATTCGAATA
Statistics
Matches: 119, Mismatches: 16, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
118 19 0.16
119 57 0.48
120 43 0.36
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (118 bp):
CTTCGGGATTTAGCCCGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTCA
CTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCCCTAGCACAAAAGC
Found at i:68690583 original size:15 final size:15
Alignment explanation
Indices: 68690563--68690593 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
68690553 GTAAGGGGTG
68690563 TTACATTTAGTGGTA
1 TTACATTTAGTGGTA
68690578 TTACATTTAGTGGTA
1 TTACATTTAGTGGTA
68690593 T
1 T
68690594 CAGAGCTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.19, T:0.48
Consensus pattern (15 bp):
TTACATTTAGTGGTA
Found at i:68695962 original size:20 final size:20
Alignment explanation
Indices: 68695937--68695985 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
68695927 ATCGATCCAA
*
68695937 TATCGATACT-TTTCTTAAGG
1 TATCGATA-TATTTCCTAAGG
68695957 TATCGATATATTTCCTAAGG
1 TATCGATATATTTCCTAAGG
68695977 TATCGATAT
1 TATCGATAT
68695986 TCCTACTCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (20 bp):
TATCGATATATTTCCTAAGG
Found at i:68695990 original size:17 final size:19
Alignment explanation
Indices: 68695947--68695990 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
68695937 TATCGATACT
*
68695947 TTTCTTAAGGTATCGATATA
1 TTTCCTAAGGTATCGA-ATA
68695967 TTTCCTAAGGTATCG-ATA
1 TTTCCTAAGGTATCGAATA
68695985 -TTCCTA
1 TTTCCTA
68695991 CTCTAATGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 6 0.26
18 3 0.13
20 14 0.61
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (19 bp):
TTTCCTAAGGTATCGAATA
Found at i:68698466 original size:33 final size:33
Alignment explanation
Indices: 68698424--68698498 Score: 141
Period size: 33 Copynumber: 2.3 Consensus size: 33
68698414 GTGATTGCAC
68698424 CTTAATGTTGATTGGTATGGTAGTTCATTAGTT
1 CTTAATGTTGATTGGTATGGTAGTTCATTAGTT
68698457 CTTAATGTTGATTGGTATGGTAGTTCATTAGTT
1 CTTAATGTTGATTGGTATGGTAGTTCATTAGTT
*
68698490 CTTTATGTT
1 CTTAATGTT
68698499 TAATATCTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.20, C:0.07, G:0.23, T:0.51
Consensus pattern (33 bp):
CTTAATGTTGATTGGTATGGTAGTTCATTAGTT
Found at i:68698743 original size:33 final size:33
Alignment explanation
Indices: 68698695--68698760 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
68698685 ATATTTATGC
* *
68698695 CTTAATTTGAGAATGA-TTTCTATAAAAGGGGAG
1 CTTAAATTGAAAATGACTTT-TATAAAAGGGGAG
* *
68698728 CTTAAATTGAAAATGACTTTTATTAAGGGGGAG
1 CTTAAATTGAAAATGACTTTTATAAAAGGGGAG
68698761 TAATCTATTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 25 0.89
34 3 0.11
ACGTcount: A:0.36, C:0.06, G:0.24, T:0.33
Consensus pattern (33 bp):
CTTAAATTGAAAATGACTTTTATAAAAGGGGAG
Found at i:68699934 original size:23 final size:22
Alignment explanation
Indices: 68699895--68699960 Score: 55
Period size: 23 Copynumber: 2.9 Consensus size: 22
68699885 TACCTATCTC
* *
68699895 TTTAT-ATATTATTTTATAATTG
1 TTTATAATTTTATATTATAA-TG
68699917 TTTATAATTTTATATTATGTAATG
1 TTTATAATTTTATATTA--TAATG
68699941 -TTATAATTTTGATATATATA
1 TTTATAATTTT-ATAT-TATA
68699961 TAAGATGATG
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
22 5 0.14
23 21 0.57
24 6 0.16
25 5 0.14
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (22 bp):
TTTATAATTTTATATTATAATG
Found at i:68706862 original size:40 final size:40
Alignment explanation
Indices: 68706817--68706984 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
68706807 CGGAATATAA
68706817 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
68706857 CCGGATAAAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
68706897 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68706937 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
68706977 CCGGATAT
1 CCGGATAT
68706985 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68713832 original size:40 final size:40
Alignment explanation
Indices: 68713787--68713954 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
68713777 CGGAATATAA
68713787 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
68713827 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * ** * *
68713867 CCAGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
68713907 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
68713947 CCGGATAT
1 CCGGATAT
68713955 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:68718093 original size:18 final size:18
Alignment explanation
Indices: 68718070--68718104 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
68718060 CCCTTGTCCT
* *
68718070 CTAAGGGAAAGCAGAAAG
1 CTAAGGCAAAGAAGAAAG
68718088 CTAAGGCAAAGAAGAAA
1 CTAAGGCAAAGAAGAAA
68718105 CTTACTAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.11, G:0.29, T:0.06
Consensus pattern (18 bp):
CTAAGGCAAAGAAGAAAG
Found at i:68723696 original size:21 final size:21
Alignment explanation
Indices: 68723671--68723715 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
68723661 TGGTTGAAAG
*
68723671 TATAGGGTTTTACCATGTGTA
1 TATAGGGTTTTACCATGAGTA
68723692 TATAGGGTTTTACCATGAGTA
1 TATAGGGTTTTACCATGAGTA
68723713 TAT
1 TAT
68723716 TTATGTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.42
Consensus pattern (21 bp):
TATAGGGTTTTACCATGAGTA
Found at i:68724450 original size:46 final size:46
Alignment explanation
Indices: 68724335--68724500 Score: 181
Period size: 48 Copynumber: 3.5 Consensus size: 46
68724325 TATGTGATCC
* * * *
68724335 AGTGTAAAACATGTCTGGGACATGCATCGGCCTTGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGAGA--TAAGCT
**
68724383 AGTGTAAGACATGTCTGGGACATGCATCAGTGTTGAGACGA-AAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGA-GATAAGCT
* * *
68724429 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATGGACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGA--GATAAGCT
* *
68724477 AGTGTAAGACCTGCCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
68724501 GCGTCAACTT
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
46 38 0.37
47 2 0.02
48 61 0.60
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGAGATAAGCT
Found at i:68725761 original size:20 final size:21
Alignment explanation
Indices: 68725723--68725761 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
68725713 ACTTAGTGAT
68725723 CACACGGGCGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
*
68725744 CACATGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
68725762 GTTTCAAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:68741125 original size:33 final size:28
Alignment explanation
Indices: 68741064--68741124 Score: 122
Period size: 28 Copynumber: 2.2 Consensus size: 28
68741054 ATGTTAGTTG
68741064 TATGTATATGCTTGGATTGGTGCTATGT
1 TATGTATATGCTTGGATTGGTGCTATGT
68741092 TATGTATATGCTTGGATTGGTGCTATGT
1 TATGTATATGCTTGGATTGGTGCTATGT
68741120 TATGT
1 TATGT
68741125 TGTGTAGGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.18, C:0.07, G:0.28, T:0.48
Consensus pattern (28 bp):
TATGTATATGCTTGGATTGGTGCTATGT
Found at i:68766049 original size:66 final size:68
Alignment explanation
Indices: 68765971--68766157 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
68765961 TAGTACCACT
*
68765971 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
68766033 CACG
65 CACG
68766037 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
68766102 ATCACG
63 ATCACG
68766108 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
68766158 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:68766082 original size:71 final size:71
Alignment explanation
Indices: 68765994--68766157 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
68765984 CGATTTGTCT
68765994 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
68766059 CTTTCA
66 CTTTCA
68766065 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
68766130 CTTTCA
66 CTTTCA
68766136 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
68766158 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:68766195 original size:71 final size:70
Alignment explanation
Indices: 68765994--68766191 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
68765984 CGATTTGTCT
* * * *
68765994 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
68766059 CTTTCA
65 CTTTCA
* * * *
68766065 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
68766130 CTTTCA
65 CTTTCA
* *
68766136 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
68766192 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:68768989 original size:46 final size:44
Alignment explanation
Indices: 68768901--68769016 Score: 126
Period size: 46 Copynumber: 2.6 Consensus size: 44
68768891 ATTGAGACAA
* * *
68768901 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGAT
1 GAGCCAGTGTAAGACATGTCTGGGACATACATCAGCCTCGAGAT
* **
68768945 GTAAGCCAGTGTAAGACGTGTCTGGGACATACATC-GGTTACGAGAT
1 G--AGCCAGTGTAAGACATGTCTGGGACATACATCAGCCT-CGAGAT
*
68768991 GAGCTAGTGTAAGACCATGTCTGGGA
1 GAGCCAGTGTAAGA-CATGTCTGGGA
68769017 TATGGCATTA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
44 13 0.22
45 12 0.20
46 35 0.58
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATACATCAGCCTCGAGAT
Found at i:68778165 original size:22 final size:21
Alignment explanation
Indices: 68778123--68778165 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
68778113 TATTATTTTA
*
68778123 ATTTAATTATATTTTTAGGTT
1 ATTTAATTATATTATTAGGTT
* *
68778144 ATTTTATTATTATTATTCGGTT
1 ATTTAATTA-TATTATTAGGTT
68778166 TTGGATTGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.26, C:0.02, G:0.09, T:0.63
Consensus pattern (21 bp):
ATTTAATTATATTATTAGGTT
Found at i:68782753 original size:47 final size:45
Alignment explanation
Indices: 68782697--68782916 Score: 180
Period size: 47 Copynumber: 4.7 Consensus size: 45
68782687 TTGTCAAGGC
* *
68782697 CGATGCATGTCCTAGACAT-GTCTTACATTGGCACTCATCTCTGTG
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCACTCATCT-TGTG
* *
68782742 TCGATGCCATGTCCTAGACATGGTCTTACACTGGCTA-TCATAGTATG-G
1 -CGATG-CATGTCCCAGACATGGTCTTACACTGGC-ACTCAT-CT-TGTG
* * * *
68782790 CTGATGCATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCTGGATG
1 C-GATGCATGTCCCAGACATGGTCTTACACTGGCACTCATCTTG-TG
* * **
68782836 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTGG
1 -CGATG-CATGTCCCAGACATGGTCTTACACTGGCACTCATCTTGT-G
*
68782884 CCGAAGCATGTCCCAGACAT-GTCTTACACTGGC
1 -CGATGCATGTCCCAGACATGGTCTTACACTGGC
68782917 GCACAAATCA
Statistics
Matches: 145, Mismatches: 17, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 38 0.26
47 58 0.40
48 43 0.30
49 4 0.03
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCACTCATCTTGTG
Found at i:68782799 original size:94 final size:93
Alignment explanation
Indices: 68782557--68782913 Score: 348
Period size: 94 Copynumber: 3.8 Consensus size: 93
68782547 ATATATTGCT
* * * *
68782557 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA-TACGCCTGCTGATGCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATG---GCCGATGCATGTCCCAG
* *
68782621 ACATGTCTTACACTAGCA--CAACTTTTAGCC
63 ACATGTCTTACACTAGCACTCATCTTGT-GCC
* ** * * * * * *
68782651 GGTG-TGTGTCCCAGACA-CGTATTACACTAGCTAT-ATTTGTCAAGGCCGATGCATGTCCTAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-TAGT-ATGGCCGATGCATGTCCCAGA
* * *
68782713 CATGTCTTACATTGGCACTCATCTCTGTGTC
64 CATGTCTTACACTAGCACTCATCT-TGTGCC
* *
68782744 GATGCCATGTCCTAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGACA
* * *
68782809 TGTCTTACACTAGCCCTCGTCTGGATGCC
66 TGTCTTACACTAGCACTCATCTTG-TGCC
* * * * *
68782838 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAATGTGGCCGAAGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGACA
68782903 TGTCTTACACT
66 TGTCTTACACT
68782914 GGCGCACAAA
Statistics
Matches: 212, Mismatches: 41, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
91 32 0.15
92 14 0.07
93 21 0.10
94 127 0.60
95 17 0.08
96 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCACTCATCTTGTGCC
Found at i:68796773 original size:29 final size:27
Alignment explanation
Indices: 68796739--68796841 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
68796729 TACTCAATCA
*
68796739 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
68796768 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
68796797 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
68796826 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
68796842 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:68803554 original size:30 final size:30
Alignment explanation
Indices: 68803518--68803574 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
68803508 CTAGGCTGTG
68803518 TGTCACACACAGTCATGACACACGCCCGTT
1 TGTCACACACAGTCATGACACACGCCCGTT
*
68803548 TGTCACACACGGTCATGACACACGCCC
1 TGTCACACACAGTCATGACACACGCCC
68803575 ATGTGTCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.39, G:0.18, T:0.18
Consensus pattern (30 bp):
TGTCACACACAGTCATGACACACGCCCGTT
Found at i:68804853 original size:57 final size:57
Alignment explanation
Indices: 68804745--68804883 Score: 156
Period size: 57 Copynumber: 2.4 Consensus size: 57
68804735 ATATAAACAA
* *
68804745 CAGGATTACCAGTCTAGGCTAAATCCTTTCTACAATATATACTCAATAGAGCTT-AGT
1 CAGGATTACCAGTCTAGGTTAAATCCTTTCTACAACATATACTCAATAGAGCTTGA-T
* * ** *
68804802 CAGGATTACCAGTCTAAGTTAAATCCTTTTTATGACATATGCTCTAA-AGAGCTTGAT
1 CAGGATTACCAGTCTAGGTTAAATCCTTTCTACAACATATACTC-AATAGAGCTTGAT
* * *
68804859 CTGGATTACCTGTCTGGGTTAAATC
1 CAGGATTACCAGTCTAGGTTAAATC
68804884 TAATCCATAA
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 66 0.96
58 3 0.04
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (57 bp):
CAGGATTACCAGTCTAGGTTAAATCCTTTCTACAACATATACTCAATAGAGCTTGAT
Found at i:68805203 original size:17 final size:17
Alignment explanation
Indices: 68805183--68805222 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
68805173 TTTTTACCAT
**
68805183 TTATCATTTTTCGGGCA
1 TTATCATTGATCGGGCA
*
68805200 TTATCATTGATCGGGCT
1 TTATCATTGATCGGGCA
68805217 TTATCA
1 TTATCA
68805223 GATACATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.45
Consensus pattern (17 bp):
TTATCATTGATCGGGCA
Found at i:68809427 original size:14 final size:13
Alignment explanation
Indices: 68809407--68809438 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
68809397 AATATTTAAC
68809407 TTGTTCTTAATTA
1 TTGTTCTTAATTA
68809420 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
68809434 TTGTT
1 TTGTT
68809439 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:68819005 original size:17 final size:17
Alignment explanation
Indices: 68818975--68819007 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
68818965 ATTCAAATTT
68818975 AACAAACATCATCATTC
1 AACAAACATCATCATTC
68818992 AACAAGACAT-ATCATT
1 AACAA-ACATCATCATT
68819008 ACAGGCATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.48, C:0.24, G:0.03, T:0.24
Consensus pattern (17 bp):
AACAAACATCATCATTC
Found at i:68825822 original size:40 final size:40
Alignment explanation
Indices: 68825720--68825871 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
68825710 AAATTGAATG
* * * * * *
68825720 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
68825760 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
68825800 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
68825840 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
68825872 AAATCGTGAT
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.03
40 89 0.95
41 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:68836480 original size:25 final size:25
Alignment explanation
Indices: 68836451--68836528 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 25
68836441 ATTCTACCTT
68836451 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
** *
68836476 AT--CACAT-TGGCCAT-TTGGCCTT-
1 ATCACACATAT-G-CATGTTCACATTC
68836498 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
68836523 ATCACA
1 ATCACA
68836529 TTGGCCATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 3 0.08
23 14 0.35
24 14 0.35
25 9 0.22
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.32
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:68836480 original size:47 final size:47
Alignment explanation
Indices: 68836429--68836572 Score: 191
Period size: 47 Copynumber: 3.1 Consensus size: 47
68836419 TTCCACGTTT
*
68836429 ATCACATTAGCCATTCT-ACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATT-TGACCTTATCACACATATGCATGTTCACATTC
*
68836476 ATCACATTGGCCATTTGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTTGACCTTATCACACATATGCATGTTCACATTC
* * * * * **
68836523 ATCACATTGGCCATTAGGCCTTATCTCATATATACACATTCACATTC
1 ATCACATTGGCCATTTGACCTTATCACACATATGCATGTTCACATTC
68836570 ATC
1 ATC
68836573 TCATAAAATC
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
46 1 0.01
47 87 0.99
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
ATCACATTGGCCATTTGACCTTATCACACATATGCATGTTCACATTC
Found at i:68839411 original size:30 final size:30
Alignment explanation
Indices: 68839362--68839418 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
68839352 GCATCAGGGG
*
68839362 ACACACGGCTGTGTAACACGATCGTGTGTC
1 ACACACGGCTGAGTAACACGATCGTGTGTC
*
68839392 ACACACGGCTGAG-ACACACGCTCGTGT
1 ACACACGGCTGAGTA-ACACGATCGTGT
68839419 CTTTGCCCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (30 bp):
ACACACGGCTGAGTAACACGATCGTGTGTC
Done.