Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 228 of 335
Found at i:68845784 original size:20 final size:20
Alignment explanation
Indices: 68845747--68845785 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
68845737 ATTTTTTATT
*
68845747 AATTTAATTATTATTTTAAA
1 AATTTAATTATAATTTTAAA
68845767 AATTTAATT-TAATCTTTAA
1 AATTTAATTATAAT-TTTAA
68845786 TCTTTAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (20 bp):
AATTTAATTATAATTTTAAA
Found at i:68846591 original size:15 final size:15
Alignment explanation
Indices: 68846571--68846607 Score: 65
Period size: 15 Copynumber: 2.4 Consensus size: 15
68846561 CTTGTGATAT
68846571 ACTTTATTATTATAA
1 ACTTTATTATTATAA
68846586 ACTTTATTATTATAA
1 ACTTTATTATTATAA
68846601 ACATTTA
1 AC-TTTA
68846608 AAATAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (15 bp):
ACTTTATTATTATAA
Found at i:68848466 original size:39 final size:39
Alignment explanation
Indices: 68848421--68848541 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
68848411 AAGCAAGACA
*
68848421 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
68848460 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCCTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
68848499 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68848538 CTGG
1 CTGG
68848542 TAACATAATT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:68849099 original size:39 final size:39
Alignment explanation
Indices: 68849054--68849225 Score: 200
Period size: 39 Copynumber: 4.1 Consensus size: 39
68849044 AAGCAAGACA
*
68849054 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68849093 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGC-T--T-C-------G-TG
**
68849144 CTGGAAATGTATTTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
68849183 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68849222 CTGG
1 CTGG
68849226 TAACATAATT
Statistics
Matches: 115, Mismatches: 6, Indels: 24
0.79 0.04 0.17
Matches are distributed among these distances:
39 74 0.64
40 2 0.02
42 1 0.01
43 1 0.01
47 1 0.01
48 1 0.01
50 2 0.02
51 33 0.29
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:68849167 original size:51 final size:51
Alignment explanation
Indices: 68849091--68849192 Score: 186
Period size: 51 Copynumber: 2.0 Consensus size: 51
68849081 GCAGGCTTCG
68849091 TGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGT
1 TGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGT
**
68849142 TGCTGGAAATGTATTTGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGT
1 TGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGT
68849193 ATCCGGGCTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (51 bp):
TGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGT
Found at i:68849207 original size:90 final size:90
Alignment explanation
Indices: 68849054--68849225 Score: 308
Period size: 90 Copynumber: 1.9 Consensus size: 90
68849044 AAGCAAGACA
68849054 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
68849119 CGCAGGCTTCGTGCTGGAAATGTTG
66 CGCAGGCTTCGTGCTGGAAATGTTG
** *
68849144 CTGGAAATGTATTTGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
*
68849209 CGCAGGCTTTGTGCTGG
66 CGCAGGCTTCGTGCTGG
68849226 TAACATAATT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 78 1.00
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (90 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
CGCAGGCTTCGTGCTGGAAATGTTG
Found at i:68855856 original size:39 final size:39
Alignment explanation
Indices: 68855811--68855972 Score: 204
Period size: 39 Copynumber: 4.1 Consensus size: 39
68855801 AAGCAAGACA
*
68855811 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68855850 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
****
68855889 CTGGAAATGCTGGAAATGTATG-TAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATG-T----ATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
68855932 CT--AAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
68855969 CTGG
1 CTGG
68855973 TAACATAATT
Statistics
Matches: 105, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
36 3 0.03
37 22 0.21
39 47 0.45
40 2 0.02
41 5 0.05
43 23 0.22
44 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:68861830 original size:22 final size:24
Alignment explanation
Indices: 68861805--68861848 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
68861795 ATTTTGTTCA
68861805 ACTTTAACTT-TTAT-TCAAAAAC
1 ACTTTAACTTGTTATATCAAAAAC
*
68861827 ACTTTAATTTGTTATATCAAAA
1 ACTTTAACTTGTTATATCAAAA
68861849 CATATTAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.43
Consensus pattern (24 bp):
ACTTTAACTTGTTATATCAAAAAC
Found at i:68866157 original size:6 final size:6
Alignment explanation
Indices: 68866140--68866199 Score: 102
Period size: 6 Copynumber: 9.8 Consensus size: 6
68866130 CCAAATGAAT
*
68866140 CATTTC TCATTTT CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
1 CATTTC -CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
68866189 CATTTC CATTT
1 CATTTC CATTT
68866200 TTTGAGAAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
6 46 0.90
7 5 0.10
ACGTcount: A:0.17, C:0.30, G:0.00, T:0.53
Consensus pattern (6 bp):
CATTTC
Found at i:68867248 original size:27 final size:27
Alignment explanation
Indices: 68867218--68867273 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
68867208 GTGTTTTGTG
* *
68867218 ATCTTGACATCAACAATGGTAGCTTAA
1 ATCTTGACATAAAAAATGGTAGCTTAA
*
68867245 ATCTTGACATAAAAAATTGTAGCTTAA
1 ATCTTGACATAAAAAATGGTAGCTTAA
68867272 AT
1 AT
68867274 AATTTTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.32
Consensus pattern (27 bp):
ATCTTGACATAAAAAATGGTAGCTTAA
Found at i:68869276 original size:24 final size:24
Alignment explanation
Indices: 68869249--68869296 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
68869239 AACTCATTTG
68869249 TAAACATTAATAATTTTGAAAACT
1 TAAACATTAATAATTTTGAAAACT
68869273 TAAACATTAATAATTTTGAAAACT
1 TAAACATTAATAATTTTGAAAACT
68869297 AAGTCTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
TAAACATTAATAATTTTGAAAACT
Found at i:68871481 original size:40 final size:39
Alignment explanation
Indices: 68871415--68871565 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
68871405 AAATTGAATG
* * *
68871415 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
68871454 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
68871494 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
68871534 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
68871566 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:68871579 original size:40 final size:39
Alignment explanation
Indices: 68871452--68871581 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
68871442 ATGCTGGAAA
* *
68871452 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
68871492 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
68871532 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
68871572 TTATATCCGG
1 TTATATCCGG
68871582 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:68873167 original size:48 final size:47
Alignment explanation
Indices: 68873104--68873194 Score: 146
Period size: 48 Copynumber: 1.9 Consensus size: 47
68873094 AACACACCAT
* * *
68873104 TTGTGGACAAGCCACCACATAATTTCCTATAAACGGCCACATAACACA
1 TTGTGGACAAACCACCACATAATTACCAAT-AACGGCCACATAACACA
68873152 TTGTGGACAAACCACCACATAATTACCAATAACGGCCACATAA
1 TTGTGGACAAACCACCACATAATTACCAATAACGGCCACATAA
68873195 TTGCAGATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
47 13 0.32
48 27 0.68
ACGTcount: A:0.40, C:0.29, G:0.12, T:0.20
Consensus pattern (47 bp):
TTGTGGACAAACCACCACATAATTACCAATAACGGCCACATAACACA
Found at i:68880482 original size:17 final size:16
Alignment explanation
Indices: 68880460--68880493 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
68880450 TCATCCCCTC
*
68880460 ATGGAGTGTAGTGCTAG
1 ATGGAGTGGAGTG-TAG
68880477 ATGGAGTGGAGTGTAG
1 ATGGAGTGGAGTGTAG
68880493 A
1 A
68880494 GGATGGATGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.26, C:0.03, G:0.44, T:0.26
Consensus pattern (16 bp):
ATGGAGTGGAGTGTAG
Found at i:68886572 original size:12 final size:12
Alignment explanation
Indices: 68886553--68886582 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
68886543 GAATTGGTCA
68886553 GAGGAGAGATTT
1 GAGGAGAGATTT
*
68886565 GGGGAGAGATTT
1 GAGGAGAGATTT
68886577 GAGGAG
1 GAGGAG
68886583 TGGTAGTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.50, T:0.20
Consensus pattern (12 bp):
GAGGAGAGATTT
Found at i:68887811 original size:17 final size:19
Alignment explanation
Indices: 68887789--68887825 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
68887779 TTGAGCTTAT
68887789 TGGGCC-ACACGGG-CGTG
1 TGGGCCTACACGGGCCGTG
*
68887806 TGGGCCTACATGGGCCGTG
1 TGGGCCTACACGGGCCGTG
68887825 T
1 T
68887826 TATGGGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.11, C:0.27, G:0.43, T:0.19
Consensus pattern (19 bp):
TGGGCCTACACGGGCCGTG
Found at i:68891579 original size:29 final size:29
Alignment explanation
Indices: 68891551--68891652 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
68891541 CCTCCGAGCT
** * * *
68891551 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
68891580 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68891609 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
68891638 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
68891653 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:68894115 original size:12 final size:12
Alignment explanation
Indices: 68894108--68894332 Score: 67
Period size: 12 Copynumber: 17.7 Consensus size: 12
68894098 TAAATAAAAT
68894108 ATATAATAATATAA
1 ATAT-ATAATA-AA
68894122 ATCATATAAT-AA
1 AT-ATATAATAAA
68894134 ATAATATAA-AAA
1 AT-ATATAATAAA
68894146 TATATATAATAAA
1 -ATATATAATAAA
*
68894159 ACGTATATAATATA
1 A--TATATAATAAA
68894173 ATATAT-AT-AA
1 ATATATAATAAA
* * * *
68894183 AGAGA-GA-AAG
1 ATATATAATAAA
68894193 ATATTATAATGAATA
1 ATA-TATAAT-AA-A
*
68894208 ATATATAACAAAA
1 ATATATAA-TAAA
68894221 TATAATATGTAATAAA
1 -AT-ATA--TAATAAA
*
68894237 ATATGTAGATAAA
1 ATATATA-ATAAA
68894250 ATATA-ATATAATA
1 ATATATA-ATAA-A
*
68894263 AGGA-ATATATAAA
1 A-TATATA-ATAAA
68894276 ATA-ATAATAATA
1 ATATATAATAA-A
*
68894288 ATATA-AA-AAT
1 ATATATAATAAA
*
68894298 ATAGTAAAATAAATA
1 ATA-TATAAT-AA-A
68894313 ATATATAATAAA
1 ATATATAATAAA
68894325 ATATATAA
1 ATATATAA
68894333 CATATAATAA
Statistics
Matches: 162, Mismatches: 20, Indels: 60
0.67 0.08 0.25
Matches are distributed among these distances:
10 11 0.07
11 11 0.07
12 53 0.33
13 23 0.14
14 45 0.28
15 13 0.08
16 3 0.02
17 3 0.02
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (12 bp):
ATATATAATAAA
Found at i:68894128 original size:9 final size:9
Alignment explanation
Indices: 68894105--68894182 Score: 54
Period size: 9 Copynumber: 8.2 Consensus size: 9
68894095 TTATAAATAA
68894105 AATATATAAT
1 AATATA-AAT
68894115 AATATAAAT
1 AATATAAAT
68894124 CATATAATAAAT
1 -A-AT-ATAAAT
68894136 AATATAAA-
1 AATATAAAT
*
68894144 AATATATAT
1 AATATAAAT
68894153 AATA-AAACGT
1 AATATAAA--T
68894163 -ATATAATAT
1 AATATAA-AT
*
68894172 AATATATAT
1 AATATAAAT
68894181 AA
1 AA
68894183 AGAGAGAAAG
Statistics
Matches: 56, Mismatches: 3, Indels: 19
0.72 0.04 0.24
Matches are distributed among these distances:
8 9 0.16
9 20 0.36
10 17 0.30
11 4 0.07
12 6 0.11
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.35
Consensus pattern (9 bp):
AATATAAAT
Found at i:68894128 original size:17 final size:16
Alignment explanation
Indices: 68894100--68894332 Score: 70
Period size: 16 Copynumber: 13.9 Consensus size: 16
68894090 ATAATTTATA
68894100 AATA-AAATATATAAT
1 AATATAAATATATAAT
68894115 AATATAAATCATATAATAAAT
1 AATAT-AA--ATAT-AT-AAT
*
68894136 AATATAAAAATATATAT
1 AATATAAATATATA-AT
**
68894153 AATA-AAACGTAT-AT
1 AATATAAATATATAAT
68894167 AATATAATATATATAA-
1 AATATAA-ATATATAAT
* * * *
68894183 AGAGAGAAAGATATTAT
1 A-ATATAAATATATAAT
*
68894200 AATGA-ATAATATATAAC
1 AAT-ATA-AATATATAAT
* *
68894217 AAAATATAATATGTAAT
1 AATATA-AATATATAAT
* ** *
68894234 AAAATATGTAGATAA-
1 AATATAAATATATAAT
*
68894249 AATAT-AATATAATAAGGA
1 AATATAAATAT-ATAA--T
68894267 ATATATAAAATAATAATAAT
1 A-ATAT-AAAT-AT-ATAAT
* *
68894287 AATATAAAAATATAGT
1 AATATAAATATATAAT
*
68894303 AAAATAAATA-ATATAT
1 AATATAAATATATA-AT
68894319 AATA-AAATATATAA
1 AATATAAATATATAA
68894333 CATATAATAA
Statistics
Matches: 162, Mismatches: 31, Indels: 50
0.67 0.13 0.21
Matches are distributed among these distances:
14 8 0.05
15 23 0.14
16 45 0.28
17 44 0.27
18 7 0.04
19 12 0.07
20 5 0.03
21 11 0.07
22 7 0.04
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.31
Consensus pattern (16 bp):
AATATAAATATATAAT
Found at i:68894165 original size:24 final size:24
Alignment explanation
Indices: 68894085--68894374 Score: 70
Period size: 25 Copynumber: 11.8 Consensus size: 24
68894075 TATATAGTGT
* *
68894085 ATAACATAATTTATAAATAAAATAT-
1 ATAA-ATAATATA-AAATATAATATA
*
68894110 AT-AATAATAT-AAAT--CATATA
1 ATAAATAATATAAAATATAATATA
68894130 ATAAATAATATAAAA-ATATATATA
1 ATAAATAATATAAAATATA-ATATA
* *
68894154 ATAAA-ACGTATATAATATAATATA
1 ATAAATA-ATATAAAATATAATATA
* * * *
68894178 TATAAAGAGAGA-AAGATATTATAATGA
1 -ATAAATA-ATATAAAATATAAT-AT-A
*
68894205 AT-AATATATAACAAAATATAATATGTA
1 ATAAATA-AT-ATAAAATATAATA--TA
* * *
68894232 AT-AA-AATATGTAGATAAAATATA
1 ATAAATAATAT-AAAATATAATATA
** * *
68894255 ATATAATAA-GGAATATATAAAATA
1 ATA-AATAATATAAAATATAATATA
* *
68894279 ATAATAATAATATAAAAATATAGTAAA
1 AT-A-AATAATAT-AAAATATAATATA
* *
68894306 ATAAATAATATATAATAAAATAT-
1 ATAAATAATATAAAATATAATATA
68894329 ATAACAT-ATAATAAAAATATAAATATA
1 ATAA-ATAAT-AT-AAAATAT-AATATA
* *
68894356 ACAGAATAA-ATAATATATA
1 ATA-AATAATATAAAATATA
68894375 TAACAAAAAT
Statistics
Matches: 195, Mismatches: 40, Indels: 61
0.66 0.14 0.21
Matches are distributed among these distances:
19 4 0.02
20 2 0.01
21 12 0.06
22 3 0.02
23 17 0.09
24 47 0.24
25 59 0.30
26 19 0.10
27 29 0.15
28 3 0.02
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (24 bp):
ATAAATAATATAAAATATAATATA
Found at i:68894270 original size:30 final size:29
Alignment explanation
Indices: 68894099--68894350 Score: 122
Period size: 30 Copynumber: 8.6 Consensus size: 29
68894089 CATAATTTAT
68894099 AAATAAAATAT-ATAATAATATAAATCATAT-
1 AAATAAAATATAAT-ATAATA-AAAT-ATATA
68894129 -AAT--AA-ATAATAT-A-AAAATATATA
1 AAATAAAATATAATATAATAAAATATATA
* **
68894152 TAATAAAACGT-ATATAATATAATATATATA
1 AAATAAAATATAATATAATA-AA-ATATATA
* * *
68894182 AAGAGAGAAAGATATTATAATGAATAATATAT-
1 AA-ATA-AAATATAATATAAT-AA-AATATATA
* *
68894214 -AACAAAATATAATATGTAATAAAATATGT-
1 AAATAAAATATAATA--TAATAAAATATATA
*
68894243 AGATAAAATATAATATAATAAGGAATATATA
1 AAATAAAATATAATATAATAA--AATATATA
68894274 AAATAATAATAATAATAT-A-AAAATATAGTA
1 AAATAA-AAT-ATAATATAATAAAATATA-TA
68894304 AAAT-AAATA-ATATATAATAAAATATATA
1 AAATAAAATATA-ATATAATAAAATATATA
* * *
68894332 ACATATAATAAAAATATAA
1 AAATAAAAT-ATAATATAA
68894351 ATATAACAGA
Statistics
Matches: 176, Mismatches: 16, Indels: 60
0.70 0.06 0.24
Matches are distributed among these distances:
22 4 0.02
23 4 0.02
24 4 0.02
25 1 0.01
26 11 0.06
27 11 0.06
28 16 0.09
29 37 0.21
30 43 0.24
31 15 0.09
32 8 0.05
33 20 0.11
34 2 0.01
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.31
Consensus pattern (29 bp):
AAATAAAATATAATATAATAAAATATATA
Found at i:68894291 original size:19 final size:19
Alignment explanation
Indices: 68894198--68894356 Score: 77
Period size: 19 Copynumber: 8.2 Consensus size: 19
68894188 GAAAGATATT
68894198 ATAATGAATAAT-ATATAACA
1 ATAAT-AATAATAATATAA-A
*
68894218 A-AAT-ATAATATGTAATAAA
1 ATAATAATAATA-AT-ATAAA
* *
68894237 ATATGTAGATAA-AATATAAT
1 ATA-ATA-ATAATAATATAAA
*
68894257 ATAATAAGGAAT-ATATAAA
1 ATAATAA-TAATAATATAAA
68894276 ATAATAATAATAATATAAAA
1 ATAATAATAATAATAT-AAA
68894296 ATATAGTAA-AATAA-ATAATA
1 ATA-A-TAATAATAATATAA-A
*
68894316 TATAATAA-AAT-ATATAAC
1 -ATAATAATAATAATATAAA
*
68894334 AT-ATAATAAAAATATAAA
1 ATAATAATAATAATATAAA
68894352 TATAA
1 -ATAA
68894357 CAGAATAAAT
Statistics
Matches: 108, Mismatches: 11, Indels: 40
0.68 0.07 0.25
Matches are distributed among these distances:
16 4 0.04
17 9 0.08
18 11 0.10
19 41 0.38
20 24 0.22
21 11 0.10
22 4 0.04
23 4 0.04
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (19 bp):
ATAATAATAATAATATAAA
Found at i:68894309 original size:46 final size:49
Alignment explanation
Indices: 68894247--68894350 Score: 126
Period size: 46 Copynumber: 2.2 Consensus size: 49
68894237 ATATGTAGAT
* * *
68894247 AAAATATAATATAATAAGGAATATATAA-AATAATA-ATAATA-AT-ATA
1 AAAATATAATAAAATAAAGAATATATAATAA-AATATATAACATATAATA
* *
68894293 AAAATATAGTAAAATAAATAATATATAATAAAATATATAACATATAATA
1 AAAATATAATAAAATAAAGAATATATAATAAAATATATAACATATAATA
68894342 AAAATATAA
1 AAAATATAA
68894351 ATATAACAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
46 28 0.58
47 7 0.15
48 2 0.04
49 11 0.23
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (49 bp):
AAAATATAATAAAATAAAGAATATATAATAAAATATATAACATATAATA
Found at i:68896383 original size:44 final size:44
Alignment explanation
Indices: 68896318--68896461 Score: 191
Period size: 44 Copynumber: 3.3 Consensus size: 44
68896308 GTCGAATATG
* * * * * *
68896318 GAGATGCCAAATC-AGTTTCTTCGATTTGTTCACTGACAATACA
1 GAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACA
*
68896361 GAGACACCAAATCTACTATCTTCGATCTGCTCTCTGACAATACA
1 GAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACA
* * *
68896405 GAGACGCCAAATGTACTATCTTTGATCTGCTCTCTGATAATACA
1 GAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACA
68896449 GAGACGCCAAATC
1 GAGACGCCAAATC
68896462 ACCTTAGATT
Statistics
Matches: 88, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
43 11 0.12
44 77 0.88
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (44 bp):
GAGACGCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACA
Found at i:68896627 original size:308 final size:308
Alignment explanation
Indices: 68896069--68896647 Score: 815
Period size: 308 Copynumber: 1.9 Consensus size: 308
68896059 GCCATGTTGA
* * *
68896069 TATCTTCAATTTGCTCTCTGACAAAACAGAGACACCAAATTTGCTATCTTTGATCTGCTCCCTGA
1 TATCTTCAATCTGCTCTCTGACAAAACAGAGACACCAAATGTACTATCTTTGATCTGCTCCCTGA
* * * * *
68896134 CAATATAGAGACTCCAAATCATCTTATATCTGCTTCAGCGTAAACACGTGAAAGCAGAATCTGCT
66 CAATACAGAGACGCCAAATCACCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCAGAATCTACT
**
68896199 ATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTAGATCTATTTTGATATGA
131 ATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTAGATCTAGCTTGATATGA
* * * * * *
68896264 AAACATCCGAAGGTTGGATCTGCTATGTCTTTAATCTGTTCTCCGTCGAATATGGAGATGCCAAA
196 AAAAATCCGAAGGTTAGATCTGCTATGTCTTCAATCAGCTCTCCGACGAATATGGAGATGCCAAA
68896329 TCAGTTTCTTCGATTTGTTCACTGACAATACAGAGACACCAAATCTAC
261 TCAGTTTCTTCGATTTGTTCACTGACAATACAGAGACACCAAATCTAC
* * * *
68896377 TATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATGTACTATCTTTGATCTGCTCTCTGA
1 TATCTTCAATCTGCTCTCTGACAAAACAGAGACACCAAATGTACTATCTTTGATCTGCTCCCTGA
* * *
68896442 TAATACAGAGACGCCAAATCACCTTAGAT-TCGCTTTAGGGTAAACACGTGAAAGC-GAAATCTA
66 CAATACAGAGACGCCAAATCACCTTAGATCT-GCTTCAGCGTAAACACGTGAAAGCAG-AATCTA
* * *
68896505 CTATGTCTTTGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCCTCTTAGATCT-GCTT-CTAT
129 CTATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTAGATCTAGCTTGATAT
* * * *
68896568 GCAAAAAAATTCGTAGGTTAGATCTGCTATGTCTTCGATCAGCTCTTCGACGAATATGGAGATGC
194 G--AAAAAATCCGAAGGTTAGATCTGCTATGTCTTCAATCAGCTCTCCGACGAATATGGAGATGC
*
68896633 CAAATCTGTTTCTTC
257 CAAATCAGTTTCTTC
68896648 AACTGGTTCC
Statistics
Matches: 236, Mismatches: 31, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
306 4 0.02
307 4 0.02
308 228 0.97
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (308 bp):
TATCTTCAATCTGCTCTCTGACAAAACAGAGACACCAAATGTACTATCTTTGATCTGCTCCCTGA
CAATACAGAGACGCCAAATCACCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCAGAATCTACT
ATGTCTTCGATCTGCTCCTTGTAAACGCAAGGATGCCAAATCATCTTAGATCTAGCTTGATATGA
AAAAATCCGAAGGTTAGATCTGCTATGTCTTCAATCAGCTCTCCGACGAATATGGAGATGCCAAA
TCAGTTTCTTCGATTTGTTCACTGACAATACAGAGACACCAAATCTAC
Found at i:68902599 original size:29 final size:28
Alignment explanation
Indices: 68902559--68902650 Score: 97
Period size: 28 Copynumber: 3.4 Consensus size: 28
68902549 ATGATTTTAT
*
68902559 AATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAAAGATCTTAGATATGATATGG
*
68902587 AATCTTATAAGATATT--ATAT--TAT--
1 AATCTTA-AAGATCTTAGATATGATATGG
*
68902610 AATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAAAGATCTTAGATATGATATGG
68902638 AATCTTATAAGAT
1 AATCTTA-AAGAT
68902651 ATTATATTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
22 6 0.12
23 7 0.14
24 4 0.08
25 3 0.06
26 3 0.06
27 4 0.08
28 14 0.27
29 10 0.20
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (28 bp):
AATCTTAAAGATCTTAGATATGATATGG
Found at i:68902601 original size:22 final size:22
Alignment explanation
Indices: 68902574--68902657 Score: 60
Period size: 22 Copynumber: 3.5 Consensus size: 22
68902564 TAGAGATCTT
68902574 AGATATGATATGGAATCTTATA
1 AGATATGATATGGAATCTTATA
* ** *
68902596 AGATATTATATTATAATCTTAGAGATCTT
1 AGATATGATA-TGGAATCTT----A--TA
68902625 AGATATGATATGGAATCTTATA
1 AGATATGATATGGAATCTTATA
*
68902647 AGATATTATAT
1 AGATATGATAT
68902658 TATATTCTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 14
0.67 0.13 0.20
Matches are distributed among these distances:
22 20 0.43
23 7 0.15
24 1 0.02
27 1 0.02
28 7 0.15
29 10 0.22
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (22 bp):
AGATATGATATGGAATCTTATA
Found at i:68902613 original size:51 final size:51
Alignment explanation
Indices: 68902537--68902672 Score: 236
Period size: 51 Copynumber: 2.7 Consensus size: 51
68902527 TAGAAACATG
* * *
68902537 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTATAAGATATTATATTATAATCTTAGAGATCTTAGATATGATATGGA
68902588 ATCTTATAAGATATTATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTATAAGATATTATATTATAATCTTAGAGATCTTAGATATGATATGGA
*
68902639 ATCTTATAAGATATTATATTATATTCTTAGAGAT
1 ATCTTATAAGATATTATATTATAATCTTAGAGAT
68902673 TTGATGGTAG
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 81 1.00
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (51 bp):
ATCTTATAAGATATTATATTATAATCTTAGAGATCTTAGATATGATATGGA
Found at i:68905515 original size:29 final size:28
Alignment explanation
Indices: 68905475--68905566 Score: 97
Period size: 28 Copynumber: 3.4 Consensus size: 28
68905465 ATGATTTTAT
*
68905475 AATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAAAGATCTTAGATATGATATGG
*
68905503 AATCTTATAAGATATT--ATAT--TAT--
1 AATCTTA-AAGATCTTAGATATGATATGG
*
68905526 AATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAAAGATCTTAGATATGATATGG
68905554 AATCTTATAAGAT
1 AATCTTA-AAGAT
68905567 ATTATATTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
22 6 0.12
23 7 0.14
24 4 0.08
25 3 0.06
26 3 0.06
27 4 0.08
28 14 0.27
29 10 0.20
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (28 bp):
AATCTTAAAGATCTTAGATATGATATGG
Found at i:68905517 original size:22 final size:22
Alignment explanation
Indices: 68905490--68905573 Score: 60
Period size: 22 Copynumber: 3.5 Consensus size: 22
68905480 TAGAGATCTT
68905490 AGATATGATATGGAATCTTATA
1 AGATATGATATGGAATCTTATA
* ** *
68905512 AGATATTATATTATAATCTTAGAGATCTT
1 AGATATGATA-TGGAATCTT----A--TA
68905541 AGATATGATATGGAATCTTATA
1 AGATATGATATGGAATCTTATA
*
68905563 AGATATTATAT
1 AGATATGATAT
68905574 TATATTCTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 14
0.67 0.13 0.20
Matches are distributed among these distances:
22 20 0.43
23 7 0.15
24 1 0.02
27 1 0.02
28 7 0.15
29 10 0.22
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (22 bp):
AGATATGATATGGAATCTTATA
Found at i:68905529 original size:51 final size:51
Alignment explanation
Indices: 68905453--68905585 Score: 230
Period size: 51 Copynumber: 2.6 Consensus size: 51
68905443 TAGAAACATG
* * *
68905453 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTATAAGATATTATATTATAATCTTAGAGATCTTAGATATGATATGGA
68905504 ATCTTATAAGATATTATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTATAAGATATTATATTATAATCTTAGAGATCTTAGATATGATATGGA
*
68905555 ATCTTATAAGATATTATATTATATTCTTAGA
1 ATCTTATAAGATATTATATTATAATCTTAGA
68905586 TATTTGATGG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 78 1.00
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (51 bp):
ATCTTATAAGATATTATATTATAATCTTAGAGATCTTAGATATGATATGGA
Found at i:68911387 original size:12 final size:12
Alignment explanation
Indices: 68911380--68911666 Score: 81
Period size: 14 Copynumber: 22.0 Consensus size: 12
68911370 TAAATAAAAT
68911380 ATATAATAATATAA
1 ATAT-ATAATA-AA
68911394 ATCATATAAT-AA
1 AT-ATATAATAAA
*
68911406 ATAATATAAAAAA
1 AT-ATATAATAAA
68911419 TATATATAATAAA
1 -ATATATAATAAA
*
68911432 ATGTATATAATATA
1 A--TATATAATAAA
68911446 ATATAT-ATAAA
1 ATATATAATAAA
* *
68911457 AGA-A-AGA-AAG
1 ATATATA-ATAAA
68911467 ATATTATAATGAACA
1 ATA-TATAAT-AA-A
*
68911482 ATATATAACAAAA
1 ATATATAA-TAAA
68911495 TATAATATGTAATAAA
1 -AT-ATA--TAATAAA
*
68911511 ATATGTAGAT-AA
1 ATATATA-ATAAA
68911523 A-ATATAATGAAA
1 ATATATAAT-AAA
68911535 TATAATATAATAAGGA
1 -AT-ATATAATAA--A
68911551 ATATATAA-AATA
1 ATATATAATAA-A
68911563 ATAATAATAATATAA
1 AT-AT-ATAATA-AA
* *
68911578 AAATATAGTAAA
1 ATATATAATAAA
*
68911590 ATAAATAATATATA
1 ATATATAATA-A-A
*
68911604 ACATATAATAAA
1 ATATATAATAAA
*
68911616 AGTACA-AATATAA
1 A-TATATAATA-AA
* *
68911629 CAGA-ATAAATAAT
1 -ATATAT-AATAAA
68911642 ATATATAATAAAA
1 ATATATAAT-AAA
*
68911655 ATATATGATAAA
1 ATATATAATAAA
68911667 TTTTTTTTAA
Statistics
Matches: 206, Mismatches: 28, Indels: 80
0.66 0.09 0.25
Matches are distributed among these distances:
10 7 0.03
11 11 0.05
12 52 0.25
13 45 0.22
14 61 0.30
15 22 0.11
16 5 0.02
17 3 0.01
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.30
Consensus pattern (12 bp):
ATATATAATAAA
Found at i:68911400 original size:9 final size:9
Alignment explanation
Indices: 68911377--68911455 Score: 61
Period size: 9 Copynumber: 8.2 Consensus size: 9
68911367 TTATAAATAA
68911377 AATATATAAT
1 AATATA-AAT
68911387 AATATAAAT
1 AATATAAAT
68911396 CATATAATAAAT
1 -A-AT-ATAAAT
*
68911408 AATATAAAA
1 AATATAAAT
*
68911417 AATATATAT
1 AATATAAAT
68911426 AATA-AAAT
1 AATATAAAT
*
68911434 GTATATAATAT
1 -AATATAA-AT
*
68911445 AATATATAT
1 AATATAAAT
68911454 AA
1 AA
68911456 AAGAAAGAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
8 3 0.05
9 26 0.46
10 16 0.29
11 5 0.09
12 6 0.11
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (9 bp):
AATATAAAT
Found at i:68911404 original size:14 final size:14
Alignment explanation
Indices: 68911356--68911455 Score: 63
Period size: 14 Copynumber: 7.4 Consensus size: 14
68911346 ATATATAGTG
* *
68911356 TATAACATAATTTA
1 TATAATATAAATTA
68911370 TA-AATA-AAATATA
1 TATAATATAAAT-TA
*
68911383 TAATAATATAAATCA
1 T-ATAATATAAATTA
*
68911398 TAT-A-ATAAATAA
1 TATAATATAAATTA
68911410 TATAA-A-AAATATA
1 TATAATATAAAT-TA
68911423 TATAATA-AAATGTA
1 TATAATATAAAT-TA
68911437 TATAATAT-AATATA
1 TATAATATAAAT-TA
68911451 TATAA
1 TATAA
68911456 AAGAAAGAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
12 17 0.24
13 15 0.21
14 29 0.41
15 6 0.08
16 4 0.06
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.36
Consensus pattern (14 bp):
TATAATATAAATTA
Found at i:68911501 original size:17 final size:17
Alignment explanation
Indices: 68911481--68911514 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
68911471 TATAATGAAC
68911481 AATATATAACAAAATAT
1 AATATATAACAAAATAT
* *
68911498 AATATGTAATAAAATAT
1 AATATATAACAAAATAT
68911515 GTAGATAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (17 bp):
AATATATAACAAAATAT
Found at i:68911524 original size:13 final size:12
Alignment explanation
Indices: 68911493--68911527 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
68911483 TATATAACAA
*
68911493 AATATAATATGT
1 AATAAAATATGT
68911505 AATAAAATATGT
1 AATAAAATATGT
68911517 AGATAAAATAT
1 A-ATAAAATAT
68911528 AATGAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (12 bp):
AATAAAATATGT
Found at i:68911566 original size:27 final size:28
Alignment explanation
Indices: 68911521--68911601 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 28
68911511 ATATGTAGAT
*
68911521 AAAATATAATGAAAT-ATAATATAATA-A
1 AAAATAT-ATAAAATAATAATATAATATA
**
68911548 GGAATATATAAAATAATAATAATAATATA
1 AAAATATATAAAATAATAAT-ATAATATA
68911577 AAAATATAGTAAAATAAATAATATA
1 AAAATATA-TAAAAT-AATAATATA
68911602 TAACATATAA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
26 6 0.14
27 10 0.23
28 6 0.14
29 7 0.16
30 9 0.20
31 6 0.14
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (28 bp):
AAAATATATAAAATAATAATATAATATA
Found at i:68911575 original size:19 final size:19
Alignment explanation
Indices: 68911519--68911579 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
68911509 AAATATGTAG
*
68911519 ATAAAAT-ATAATGA-AAT
1 ATAAAATAATAATAATAAT
* *
68911536 ATAATATAATAAGGAAT-AT
1 ATAAAATAATAA-TAATAAT
68911555 ATAAAATAATAATAATAAT
1 ATAAAATAATAATAATAAT
68911574 ATAAAA
1 ATAAAA
68911580 ATATAGTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 6 0.17
18 7 0.20
19 22 0.63
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
ATAAAATAATAATAATAAT
Found at i:68911593 original size:46 final size:45
Alignment explanation
Indices: 68911519--68911651 Score: 119
Period size: 43 Copynumber: 3.0 Consensus size: 45
68911509 AAATATGTAG
* *
68911519 ATAAAATATAATGAAATATAATATAATAAGGAATATATAAAATAATA
1 ATAAAATATAA-GAAATATAATAAAATAAAGAATATATAAAAT-ATA
* * *
68911566 ATAATAATATAA-AAATATAGTAAAATAAATAATATATAACATATA
1 ATAA-AATATAAGAAATATAATAAAATAAAGAATATATAAAATATA
* * * * * *
68911611 ATAAAA-GT-ACAAATATAACAGAATAAATAATATATATAATA
1 ATAAAATATAAGAAATATAATAAAATAAAGAATATATAAAATA
68911652 AAAATATATG
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
42 1 0.01
43 27 0.37
44 2 0.03
45 7 0.10
46 25 0.34
47 4 0.05
48 7 0.10
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (45 bp):
ATAAAATATAAGAAATATAATAAAATAAAGAATATATAAAATATA
Found at i:68911596 original size:25 final size:26
Alignment explanation
Indices: 68911523--68911651 Score: 53
Period size: 29 Copynumber: 4.5 Consensus size: 26
68911513 ATGTAGATAA
* * **
68911523 AATATAATGAAATATAATATAATAAGG
1 AATAT-ATAAAATATAATAAAATAAAT
*
68911550 AATATATAAAATAATAATAATAATATAAA
1 AATATATAAAAT-ATAATAA-AATA-AAT
68911579 AATATAGTAAAATA-AATAATATATAACATAT
1 AATATA-TAAAATATAATAA-A-AT-A-A-AT
* * *
68911610 AATAAAAGTACAAATATAACAGAATAAAT
1 AAT-ATA-TA-AAATATAATAAAATAAAT
*
68911639 AATATATATAATA
1 AATATATAAAATA
68911652 AAAATATATG
Statistics
Matches: 81, Mismatches: 11, Indels: 21
0.72 0.10 0.19
Matches are distributed among these distances:
26 10 0.12
27 13 0.16
28 13 0.16
29 15 0.19
30 9 0.11
31 5 0.06
32 7 0.09
33 6 0.07
34 3 0.04
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (26 bp):
AATATATAAAATATAATAAAATAAAT
Found at i:68911602 original size:27 final size:29
Alignment explanation
Indices: 68911536--68911604 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
68911526 ATAATGAAAT
*
68911536 ATAATATAATAAGGAATATATAAAATAATA
1 ATAATAT-ATAAGAAATATATAAAATAATA
68911566 ATAATAATATAA-AAATATAGTAAAAT-A-A
1 ATAAT-ATATAAGAAATATA-TAAAATAATA
68911594 ATAATATATAA
1 ATAATATATAA
68911605 CATATAATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
27 6 0.17
28 6 0.17
29 7 0.19
30 15 0.42
31 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.30
Consensus pattern (29 bp):
ATAATATATAAGAAATATATAAAATAATA
Found at i:68913379 original size:44 final size:44
Alignment explanation
Indices: 68913298--68913382 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
68913288 GCCATGTTGA
* *
68913298 TATCTTCGATCTGCTCTCTGACAAAACAAAGATGCCAAATCTCC
1 TATCTTCAATCTGCTCTCTGACAAAACAAAGACGCCAAATCTCC
* * *
68913342 TATCTTCAATCTGCTCTCTGACAATATAGAGACGCCAAATC
1 TATCTTCAATCTGCTCTCTGACAAAACAAAGACGCCAAATC
68913383 ATCTTATATC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (44 bp):
TATCTTCAATCTGCTCTCTGACAAAACAAAGACGCCAAATCTCC
Found at i:68913612 original size:44 final size:44
Alignment explanation
Indices: 68913564--68913690 Score: 164
Period size: 44 Copynumber: 2.9 Consensus size: 44
68913554 CAAATCAGTT
* * * * *
68913564 TCTTCGATTTGTTCTCTGACAATACAGAGACACCAATTGTACTA
1 TCTTCGATCTGCTCTCTAACAATACAGAGACACCAAATCTACTA
*
68913608 TCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATCTACTA
1 TCTTCGATCTGCTCTCTAACAATACAGAGACACCAAATCTACTA
* * **
68913652 TCTTTGATCTACTCTCTAACAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCTAACAATACAGAGACACCAAATC
68913691 ATCTTAGATT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 74 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTAACAATACAGAGACACCAAATCTACTA
Found at i:68913856 original size:308 final size:308
Alignment explanation
Indices: 68913298--68913876 Score: 854
Period size: 308 Copynumber: 1.9 Consensus size: 308
68913288 GCCATGTTGA
* * * * *
68913298 TATCTTCGATCTGCTCTCTGACAAAACAAAGATGCCAAATCTCCTATCTTCAATCTGCTCTCTGA
1 TATCTTCGATCTGCTCTCTAACAAAACAAAGACGCCAAATCTACTATCTTCAATCTACTCTCTAA
* * *
68913363 CAATATAGAGACGCCAAATCATCTTATATCTGCTTCAGCGTAAACACGTGAAAGCAAAATCTGCT
66 CAATACAGAGACGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCAAAATCTACT
* * * **
68913428 ATGTCTTCGATCTGCTCCTTGTAAATGCATGGATGCCAAATCATCTTAGATCTACTTCGATATGA
131 ATGTCTTCGATCTACTCCTTGTAAACGCAAGGATGCCAAATCATCTTAGATCTACTTCGATACAA
* * * *
68913493 AAACATTCGAAGGTTGGATCTTCCATGTCTTCGATCTGTTCTCCGTCGAATATGGAGATGCCAAA
196 AAACATCCGAAGGTTAGATCTGCCATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAA
68913558 TCAGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAATTGTAC
261 TCAGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAATTGTAC
* * **
68913606 TATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATCTACTATCTTTGATCTACTCTCTAA
1 TATCTTCGATCTGCTCTCTAACAAAACAAAGACGCCAAATCTACTATCTTCAATCTACTCTCTAA
* * **
68913671 CAATACAGAGATGCCAAATCATCTTAGAT-TCGCTTTAGCGTAAACACGTGAAAGCCGAATCTAC
66 CAATACAGAGACGCCAAATCATCTTAGATCT-GCTTCAGCGTAAACACGTGAAAGCAAAATCTAC
* * * * *
68913735 TATGTCTTCGATCTACTTCTTGTAAACGCAAGGATGCCAAATCCTCTTGGATCTGCTTCGATGCA
130 TATGTCTTCGATCTACTCCTTGTAAACGCAAGGATGCCAAATCATCTTAGATCTACTTCGATACA
*
68913800 AAAACATCCGAAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAA
195 AAAACATCCGAAGGTTAGATCTGCCATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAA
*
68913865 ATCTGTTTCTTC
260 ATCAGTTTCTTC
68913877 AACTGGTTCC
Statistics
Matches: 238, Mismatches: 32, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
307 1 0.00
308 237 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (308 bp):
TATCTTCGATCTGCTCTCTAACAAAACAAAGACGCCAAATCTACTATCTTCAATCTACTCTCTAA
CAATACAGAGACGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCAAAATCTACT
ATGTCTTCGATCTACTCCTTGTAAACGCAAGGATGCCAAATCATCTTAGATCTACTTCGATACAA
AAACATCCGAAGGTTAGATCTGCCATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAA
TCAGTTTCTTCGATTTGTTCTCTGACAATACAGAGACACCAATTGTAC
Found at i:68918365 original size:25 final size:25
Alignment explanation
Indices: 68918337--68918386 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
68918327 GTATAAAGAA
68918337 TATAAAAAGAATGAATGAATTTAAG
1 TATAAAAAGAATGAATGAATTTAAG
*
68918362 TATACAAAGAATGAATGAATTTAAG
1 TATAAAAAGAATGAATGAATTTAAG
68918387 AATGATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.54, C:0.02, G:0.16, T:0.28
Consensus pattern (25 bp):
TATAAAAAGAATGAATGAATTTAAG
Found at i:68920707 original size:18 final size:17
Alignment explanation
Indices: 68920679--68920712 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
68920669 GACCTTAGCC
68920679 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
68920696 CATTATCAGAATTAGAA
1 CATTA-CAGAATAAGAA
68920713 CCAAAATGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:68920736 original size:30 final size:29
Alignment explanation
Indices: 68920700--68920877 Score: 187
Period size: 30 Copynumber: 5.9 Consensus size: 29
68920690 AAGAAACATT
* * *
68920700 ATCAGAATTAGAACCAAAATGAGAATCACA
1 ATCAGAATTAGAA-CAGAATCAGAATCAGA
* *
68920730 ATCAGAATCAATAACAGAATCAGAATCAGA
1 ATCAGAAT-TAGAACAGAATCAGAATCAGA
68920760 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATTAG-AACAGAATCAGAATCAGA
*
68920790 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTA-G-AACAGAATCAGAATCAGA
* *
68920821 ATTAGTATTAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAG-AACAGAATCAGAATCAGA
*
68920851 ATCAGAATTACGTGACAGAATCAGAAT
1 ATCAGAATTA-G-AACAGAATCAGAAT
68920878 GTGAATGCAA
Statistics
Matches: 128, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
29 2 0.02
30 80 0.62
31 46 0.36
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (29 bp):
ATCAGAATTAGAACAGAATCAGAATCAGA
Found at i:68920814 original size:25 final size:26
Alignment explanation
Indices: 68920780--68920852 Score: 94
Period size: 25 Copynumber: 2.7 Consensus size: 26
68920770 GTAACAGAAT
*
68920780 CAGAATCAGAATCAGAATTAG-GTGA
1 CAGAATCAGAATCAGAATTAGTGTAA
68920805 CAGAATCAGAATCAGAATTAGTATTAGTAA
1 CAGAATCAGAATCAGAATTAG---T-GTAA
68920835 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
68920853 CAGAATTACG
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
25 21 0.50
30 21 0.50
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.22
Consensus pattern (26 bp):
CAGAATCAGAATCAGAATTAGTGTAA
Found at i:68920827 original size:55 final size:56
Alignment explanation
Indices: 68920750--68920877 Score: 195
Period size: 61 Copynumber: 2.2 Consensus size: 56
68920740 ATAACAGAAT
*
68920750 CAGAATCAGAATC-AATATTAGTAACAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAAATATTAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
68920805 CAGAATCAGAATCAGAATTAGTATTAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
1 CAGAATCAGAATC--AA--A-TATTAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
68920866 CAGAATCAGAAT
1 CAGAATCAGAAT
68920878 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 1, Indels: 6
0.90 0.01 0.08
Matches are distributed among these distances:
55 13 0.20
58 1 0.02
60 1 0.02
61 51 0.77
ACGTcount: A:0.47, C:0.13, G:0.18, T:0.22
Consensus pattern (56 bp):
CAGAATCAGAATCAAATATTAGTAACAGAATCAGAATCAGAATCAGAATTACGTGA
Found at i:68920877 original size:6 final size:6
Alignment explanation
Indices: 68920700--68920858 Score: 121
Period size: 6 Copynumber: 26.3 Consensus size: 6
68920690 AAGAAACATT
* * * * * *
68920700 ATCAGA ATTAGA ACCAAA ATGAGA ATCACA ATCAGA ATCA-A TAACAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA -ATCAGA
*
68920748 ATCAGA ATCAGA ATCA-A TATTAGTA A-CAGA ATCAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA -ATCAG-A ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
68920796 ATTAG- GTGACAGA ATCAGA ATCAGA ATTAGT ATTAGTA A-CAGA ATCAGA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCAG-A ATCAGA ATCAGA
68920845 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
68920859 TACGTGACAG
Statistics
Matches: 120, Mismatches: 22, Indels: 22
0.73 0.13 0.13
Matches are distributed among these distances:
5 7 0.06
6 106 0.88
7 5 0.04
8 2 0.02
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:68921031 original size:27 final size:26
Alignment explanation
Indices: 68920994--68921059 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
68920984 AGCATGGCTG
*
68920994 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
68921020 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
68921047 CCAGAATCAGATA
1 CCAGAA-CAGATA
68921060 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:68921064 original size:27 final size:27
Alignment explanation
Indices: 68920994--68921067 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
68920984 AGCATGGCTG
* *
68920994 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
68921020 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
68921047 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
68921068 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:68921074 original size:27 final size:27
Alignment explanation
Indices: 68921018--68921075 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
68921008 GTGACAGAGT
* * *
68921018 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
68921045 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
68921072 CACC
1 CACC
68921076 TAACAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:68921280 original size:22 final size:22
Alignment explanation
Indices: 68921232--68921290 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
68921222 GTAAATACGT
*
68921232 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
68921254 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
68921276 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
68921291 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:68921459 original size:27 final size:26
Alignment explanation
Indices: 68921378--68921459 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
68921368 TCGATCGGTC
* * * *
68921378 AACA-ATATGGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
68921403 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
68921430 AACAGATATTTGTGGCATAGCCACCTG
1 AACAGATA-TTGTGGCAGAGCCACCAG
68921457 AAC
1 AAC
68921460 GCTTCCTCCG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.02
26 10 0.21
27 37 0.77
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:68921688 original size:27 final size:27
Alignment explanation
Indices: 68921658--68921853 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
68921648 GGGGCAAAAT
* * * *
68921658 GGTAATTTTACCCCACAAGGGTGTCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
68921685 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
68921712 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
68921739 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
68921766 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
68921793 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
68921820 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
68921847 AGTAATT
1 GGTAATT
68921854 TCACAATCAA
Statistics
Matches: 145, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:68922132 original size:27 final size:27
Alignment explanation
Indices: 68921858--68922130 Score: 352
Period size: 27 Copynumber: 10.1 Consensus size: 27
68921848 GTAATTTCAC
*
68921858 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
68921885 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
68921912 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
68921939 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
68921966 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
68921993 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
68922020 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
68922047 AATCGAGGATAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
68922074 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
68922101 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
68922128 AAT
1 AAT
68922131 TGGGAGTACT
Statistics
Matches: 213, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.01
27 210 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:68928566 original size:12 final size:12
Alignment explanation
Indices: 68928559--68928853 Score: 88
Period size: 12 Copynumber: 23.9 Consensus size: 12
68928549 TAAATAAAAT
68928559 ATATAATAATATAA
1 ATAT-ATAATA-AA
68928573 ATCATATAAT-AA
1 AT-ATATAATAAA
68928585 ATAATATAA-AAA
1 AT-ATATAATAAA
68928597 ATATGTATAATAAA
1 ATA--TATAATAAA
*
68928611 ATGTATATAATATA
1 A--TATATAATAAA
68928625 ATATAT-ATAAA
1 ATATATAATAAA
* *
68928636 AGA-A-AGA-AAG
1 ATATATA-ATAAA
68928646 ATATTATAATGAATA
1 ATA-TATAAT-AA-A
*
68928661 ATATATAACAAAA
1 ATATATAA-TAAA
68928674 TATAATATGTAATAAA
1 -AT-ATA--TAATAAA
*
68928690 ATATGTAGAT-AA
1 ATATATA-ATAAA
68928702 A-ATATAATGAAA
1 ATATATAAT-AAA
*
68928714 TATAATATAATAAGG
1 -AT-ATATAATAA-A
68928729 A-ATAT-ATAAA
1 ATATATAATAAA
68928739 ATA-ATAAT--A
1 ATATATAATAAA
68928748 ATA-AT-ATAAA
1 ATATATAATAAA
68928758 ATATAGTAA-ATAA
1 ATATA-TAATA-AA
68928771 ATATATAATAAA
1 ATATATAATAAA
*
68928783 ATATATAACATATA
1 ATATAT-A-ATAAA
* *
68928797 ATA-AAAATACA
1 ATATATAATAAA
* *
68928808 A-ATATAACAGA
1 ATATATAATAAA
* *
68928819 ATAAATAAT-AT
1 ATATATAATAAA
68928830 ATATATAATAAAA
1 ATATATAAT-AAA
*
68928843 ATATATGATAA
1 ATATATAATAA
68928854 TTTTTTTTAA
Statistics
Matches: 213, Mismatches: 26, Indels: 86
0.66 0.08 0.26
Matches are distributed among these distances:
8 2 0.01
9 6 0.03
10 15 0.07
11 39 0.18
12 53 0.25
13 30 0.14
14 43 0.20
15 17 0.08
16 5 0.02
17 3 0.01
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (12 bp):
ATATATAATAAA
Found at i:68928579 original size:9 final size:9
Alignment explanation
Indices: 68928556--68928634 Score: 52
Period size: 9 Copynumber: 8.2 Consensus size: 9
68928546 TTATAAATAA
68928556 AATATATAAT
1 AATATA-AAT
68928566 AATATAAAT
1 AATATAAAT
68928575 CATATAATAAAT
1 -A-AT-ATAAAT
*
68928587 AATATAAAA
1 AATATAAAT
**
68928596 AATATGTAT
1 AATATAAAT
68928605 AATA-AAAT
1 AATATAAAT
*
68928613 GTATATAATAT
1 -AATATAA-AT
*
68928624 AATATATAT
1 AATATAAAT
68928633 AA
1 AA
68928635 AAGAAAGAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
8 2 0.04
9 25 0.46
10 16 0.30
11 5 0.09
12 6 0.11
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (9 bp):
AATATAAAT
Found at i:68928579 original size:17 final size:16
Alignment explanation
Indices: 68928551--68928854 Score: 67
Period size: 17 Copynumber: 18.2 Consensus size: 16
68928541 ATAATTTATA
68928551 AATA-AAATATATAAT
1 AATATAAATATATAAT
68928566 AATATAAATCATATAAT
1 AATATAAAT-ATATAAT
* *
68928583 AA-ATAATATAAAAAAT
1 AATATAA-ATATATAAT
*
68928599 ATGTATAATAAA-ATGTATAT
1 A---AT-ATAAATATATA-AT
*
68928619 AATATAATATATATAAA
1 AATATAA-ATATATAAT
* * * *
68928636 AGAAAGAAAGATATTAT
1 A-ATATAAATATATAAT
*
68928653 AATGA-ATAATATATAAC
1 AAT-ATA-AATATATAAT
* *
68928670 AAAATATAATATGTAAT
1 AATATA-AATATATAAT
* ** *
68928687 AAAATATGTAGATAA-
1 AATATAAATATATAAT
*
68928702 AATAT-AATGAAAT-AT
1 AATATAAAT-ATATAAT
*
68928717 AATAT-AATA-AGGAAT
1 AATATAAATATA-TAAT
68928732 -ATATAAAATAATAATAAT
1 AATAT-AAAT-AT-ATAAT
*
68928750 AATATAAA-ATATAGT
1 AATATAAATATATAAT
68928765 AA-ATAAATATATAAT
1 AATATAAATATATAAT
*
68928780 AAAATATATAACATATAAT
1 --AATATA-AATATATAAT
* *
68928799 AAAAATACAA-ATATAACAG
1 -AATATA-AATATAT-A-AT
*
68928818 AATAAATAATATATATAT
1 AATATA-AATATATA-AT
* *
68928836 AATAAAAATATATGAT
1 AATATAAATATATAAT
68928852 AAT
1 AAT
68928855 TTTTTTTAAA
Statistics
Matches: 215, Mismatches: 41, Indels: 65
0.67 0.13 0.20
Matches are distributed among these distances:
13 1 0.00
14 12 0.06
15 33 0.15
16 36 0.17
17 63 0.29
18 40 0.19
19 22 0.10
20 4 0.02
21 4 0.02
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (16 bp):
AATATAAATATATAAT
Found at i:68928619 original size:39 final size:42
Alignment explanation
Indices: 68928535--68928636 Score: 115
Period size: 40 Copynumber: 2.5 Consensus size: 42
68928525 ATATATAGTG
* *
68928535 TATAACATAATTTATA-AATAAAATATATAATAATATAAATCA
1 TATAATATAATATATATAA-AAAATATATAATAATATAAATCA
* *
68928577 TATAATA-AATA-ATATAAAAAATATGT-ATAATA-AAATGTA
1 TATAATATAATATATATAAAAAATATATAATAATATAAAT-CA
68928616 TATAATATAATATATATAAAA
1 TATAATATAATATATATAAAA
68928637 GAAAGAAAGA
Statistics
Matches: 52, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
38 4 0.08
39 14 0.27
40 15 0.29
41 13 0.25
42 6 0.12
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (42 bp):
TATAATATAATATATATAAAAAATATATAATAATATAAATCA
Found at i:68928754 original size:19 final size:19
Alignment explanation
Indices: 68928698--68928845 Score: 83
Period size: 19 Copynumber: 7.7 Consensus size: 19
68928688 AAATATGTAG
*
68928698 ATAAAAT-ATAATGA-AAT
1 ATAAAATAATAATAATAAT
* *
68928715 ATAATATAATAAGGAAT-AT
1 ATAAAATAATAA-TAATAAT
68928734 ATAAAATAATAATAATAAT
1 ATAAAATAATAATAATAAT
*
68928753 ATAAAAT-ATAGTAAATAAAT
1 ATAAAATAATAAT-AAT-AAT
* *
68928773 ATATAATAA-AATATATAAC
1 ATAAAATAATAATA-ATAAT
* *
68928792 ATATAATAAAAATACA-AAT
1 ATAAAATAATAATA-ATAAT
* *
68928811 ATAACAGAATAAATAATATAT
1 ATAAAATAAT-AATAATA-AT
* *
68928832 ATATAATAAAAATA
1 ATAAAATAATAATA
68928846 TATGATAATT
Statistics
Matches: 100, Mismatches: 19, Indels: 21
0.71 0.14 0.15
Matches are distributed among these distances:
17 6 0.06
18 11 0.11
19 47 0.47
20 27 0.27
21 9 0.09
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (19 bp):
ATAAAATAATAATAATAAT
Found at i:68928769 original size:25 final size:24
Alignment explanation
Indices: 68928698--68928778 Score: 61
Period size: 21 Copynumber: 3.5 Consensus size: 24
68928688 AAATATGTAG
68928698 ATAAAATATAATGAAATATAAT-ATA
1 ATAAAATAT-AT-AAATATAATAATA
68928723 ATAAGGAATATATAAA-ATAATAATA
1 ATAA--AATATATAAATATAATAATA
*
68928748 AT--AATATA-AAATATAGT-A-A
1 ATAAAATATATAAATATAATAATA
68928767 AT-AAATATATAA
1 ATAAAATATATAA
68928779 TAAAATATAT
Statistics
Matches: 49, Mismatches: 1, Indels: 16
0.74 0.02 0.24
Matches are distributed among these distances:
19 3 0.06
20 10 0.20
21 12 0.24
24 5 0.10
25 12 0.24
26 2 0.04
27 5 0.10
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (24 bp):
ATAAAATATATAAATATAATAATA
Found at i:68928777 original size:55 final size:50
Alignment explanation
Indices: 68928698--68928814 Score: 137
Period size: 55 Copynumber: 2.2 Consensus size: 50
68928688 AAATATGTAG
*
68928698 ATAAAATATAATGAAATATAATATAATAAGGAATATATAAAATAATAATAATAA
1 ATAAAATATAATGAAATAAAATATAATAA--AATATATAAAAT-ATAATAA-AA
* *
68928752 TATAAAATATAGT-AAATAAATATATAATAAAATATATAACATATAATAAAA
1 -ATAAAATATAATGAAATAAA-ATATAATAAAATATATAAAATATAATAAAA
68928803 ATACAAATATAA
1 ATA-AAATATAA
68928815 CAGAATAAAT
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
50 3 0.05
51 9 0.16
52 7 0.12
53 11 0.20
54 6 0.11
55 20 0.36
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (50 bp):
ATAAAATATAATGAAATAAAATATAATAAAATATATAAAATATAATAAAA
Found at i:68928796 original size:34 final size:32
Alignment explanation
Indices: 68928737--68928801 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
68928727 GGAATATATA
*
68928737 AAATAATAATAATAATATAAAATATAGTAAAT
1 AAATAATAATAATAATATAAAATATAATAAAT
68928769 AAATATATAATAA-AATATATAACATATAATAAA
1 AAATA-ATAATAATAATATA-AA-ATATAATAAA
68928802 AATACAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 11 0.38
33 9 0.31
34 9 0.31
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (32 bp):
AAATAATAATAATAATATAAAATATAATAAAT
Found at i:68928829 original size:55 final size:54
Alignment explanation
Indices: 68928718--68928848 Score: 131
Period size: 52 Copynumber: 2.3 Consensus size: 54
68928708 ATGAAATATA
* * *
68928718 ATATAATAAGGAATATATAAAATAATAATAATAATATAAAATATAGTAAATAAAT
1 ATATAATAA-GAATATATAAAATAATAATAAAAATACAAAATACAGTAAATAAAT
*
68928773 ATATAATAA-AATATATAACAT-ATAATAAAAATACAAATATAACAGAATAAATAATATAT
1 ATATAATAAGAATATATAAAATAATAATAAAAATACAAA-AT-ACAG--TAAAT-A-A-AT
*
68928832 ATATAATAAAAATATAT
1 ATATAATAAGAATATAT
68928849 GATAATTTTT
Statistics
Matches: 64, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
52 14 0.22
53 13 0.20
54 3 0.05
55 9 0.14
56 5 0.08
57 1 0.02
58 1 0.02
59 11 0.17
60 7 0.11
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (54 bp):
ATATAATAAGAATATATAAAATAATAATAAAAATACAAAATACAGTAAATAAAT
Found at i:68929159 original size:22 final size:23
Alignment explanation
Indices: 68929133--68929175 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
68929123 GGTTAGGGCT
68929133 AATTT-AAAA-ATAAAATAAAATG
1 AATTTGAAAATATAAAA-AAAATG
68929155 AATTTGAAAATATAAAAAAAA
1 AATTTGAAAATATAAAAAAAA
68929176 CACAGAAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 8 0.42
24 6 0.32
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (23 bp):
AATTTGAAAATATAAAAAAAATG
Found at i:68940409 original size:40 final size:40
Alignment explanation
Indices: 68940354--68940574 Score: 338
Period size: 40 Copynumber: 5.5 Consensus size: 40
68940344 CATTTGAATG
68940354 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
68940394 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGCTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
68940434 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
68940474 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
68940514 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
68940554 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
68940575 AAACTTGGGT
Statistics
Matches: 166, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.07
40 153 0.92
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:68942910 original size:83 final size:80
Alignment explanation
Indices: 68942758--68942981 Score: 321
Period size: 83 Copynumber: 2.8 Consensus size: 80
68942748 AACCCAAGTA
* * *
68942758 CCTTCGGGATTTAG-CCGGATATA-ACAACTCGCACAAATGCCTTCAGG-TTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGA-AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
68942820 GTCACTAGCACAAATG
65 GTCACTAGCACAAATG
* *
68942836 CCTTCGGGACTTAGCCTGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCA-CCCGGAT
1 CCTTCGGGACTTAGCCCGGATATAG-AA--ACTCGCACAAATGCCTTCGGGACTT-AGCCCGGAT
68942900 ATAGTCACTAGCACAAATG
62 ATAGTCACTAGCACAAATG
*
68942919 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
68942982 CATCCGAATA
Statistics
Matches: 130, Mismatches: 8, Indels: 14
0.86 0.05 0.09
Matches are distributed among these distances:
78 13 0.10
79 8 0.06
80 35 0.27
81 1 0.01
82 21 0.16
83 51 0.39
84 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:68942925 original size:40 final size:40
Alignment explanation
Indices: 68942758--68942981 Score: 269
Period size: 40 Copynumber: 5.6 Consensus size: 40
68942748 AACCCAAGTA
* * *
68942758 CCTTCGGGATTTAG-CCGGATATA-ACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
68942797 CCTTCAGG-TTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
68942836 CCTTCGGGACTTAGCCTGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
68942879 CCTTCGGGACTTCA-CCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTT-AGCCCGGATATAGTCACTAGCACAAATG
** *
68942919 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
68942959 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
68942982 CATCCGAATA
Statistics
Matches: 163, Mismatches: 12, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
38 5 0.03
39 37 0.23
40 85 0.52
43 34 0.21
44 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:68947372 original size:56 final size:56
Alignment explanation
Indices: 68947286--68947574 Score: 413
Period size: 56 Copynumber: 5.2 Consensus size: 56
68947276 GCCACTATAG
* * *
68947286 GGTCTTACTTGTAAACACATATCAGAATCACATATCGATGTCAACGTATTAAACGT
1 GGTCTTACTTGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
*
68947342 GGTCTTACTTGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTTGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* * *
68947398 GGTCTTACTCGCACACTCATATCAGAATCATATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTTGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* **
68947454 GGTCTTACTCGCACACACATATTGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTTGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* * * *
68947510 GGTCTTAC-T-CACACATATTTC-GAAATCACATATTGATGCCAATGTATTAAACGT
1 GGTCTTACTTGCACACACATATCAG-AATCACATATCGATGCCAACGTATTAAACGT
*
68947564 GATCTTACTTG
1 GGTCTTACTTG
68947575 TAATCACATA
Statistics
Matches: 211, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
53 1 0.00
54 45 0.21
55 1 0.00
56 164 0.78
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (56 bp):
GGTCTTACTTGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:68947594 original size:43 final size:43
Alignment explanation
Indices: 68947533--68947717 Score: 228
Period size: 43 Copynumber: 4.3 Consensus size: 43
68947523 CATATTTCGA
* *** * * *
68947533 AATCACATATTGATGCCAATGTATTAAACGTGATCTTACTTGT
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGT
* *
68947576 AATCACATATCGATGCCAATGTCCCAGATGTGGTCTTACACGT
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGT
*
68947619 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACT-T
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACA-TGT
* * * *
68947662 AATCACATATCGATGCCAATGTCCTAGACATGGTCTGACACGT
1 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGT
68947705 AATCACATATCGA
1 AATCACATATCGA
68947718 AAATCCTATG
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
43 123 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACATGT
Found at i:68952314 original size:39 final size:39
Alignment explanation
Indices: 68952260--68952422 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
68952250 TGTGAATGAA
68952260 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
68952299 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
68952338 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
68952377 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
68952417 TGTGCG
1 TGTGCG
68952423 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:68952438 original size:78 final size:78
Alignment explanation
Indices: 68952273--68952451 Score: 243
Period size: 78 Copynumber: 2.3 Consensus size: 78
68952263 GCGAATTGTG
*
68952273 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 ATATACGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
**
68952338 TGTGCGAGCTATG
66 TGTGCGAGCTACC
* * * *
68952351 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCAT
1 ATATACGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAA
* *
68952416 TTGTGCGGGTTACC
65 TTGTGCGAGCTACC
*
68952430 ATA-ACGGGCTATGTCCCGAAGG
1 ATATACGGGCTAAG-CCCGAAGG
68952452 TGTTTTGAAC
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
78 59 0.66
79 31 0.34
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (78 bp):
ATATACGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
TGTGCGAGCTACC
Found at i:68960284 original size:39 final size:39
Alignment explanation
Indices: 68960230--68960392 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
68960220 TGTGAATGAA
68960230 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
68960269 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
68960308 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
68960347 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
68960387 TGTGCG
1 TGTGCG
68960393 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:68960408 original size:78 final size:78
Alignment explanation
Indices: 68960243--68960421 Score: 243
Period size: 78 Copynumber: 2.3 Consensus size: 78
68960233 GCGAATTGTG
*
68960243 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 ATATACGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
**
68960308 TGTGCGAGCTATG
66 TGTGCGAGCTACC
* * * *
68960321 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCAT
1 ATATACGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAA
* *
68960386 TTGTGCGGGTTACC
65 TTGTGCGAGCTACC
*
68960400 ATA-ACGGGCTATGTCCCGAAGG
1 ATATACGGGCTAAG-CCCGAAGG
68960422 TGTTTTGAAC
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
78 59 0.66
79 31 0.34
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (78 bp):
ATATACGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
TGTGCGAGCTACC
Found at i:68964221 original size:39 final size:39
Alignment explanation
Indices: 68964167--68964329 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
68964157 TGTGAATGAA
68964167 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
68964206 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
68964245 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
68964284 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
68964324 TGTGCG
1 TGTGCG
68964330 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:68964345 original size:78 final size:78
Alignment explanation
Indices: 68964180--68964358 Score: 243
Period size: 78 Copynumber: 2.3 Consensus size: 78
68964170 GCGAATTGTG
*
68964180 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 ATATACGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
**
68964245 TGTGCGAGCTATG
66 TGTGCGAGCTACC
* * * *
68964258 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCAT
1 ATATACGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAA
* *
68964323 TTGTGCGGGTTACC
65 TTGTGCGAGCTACC
*
68964337 ATA-ACGGGCTATGTCCCGAAGG
1 ATATACGGGCTAAG-CCCGAAGG
68964359 TGTTTTGAAC
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
78 59 0.66
79 31 0.34
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (78 bp):
ATATACGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
TGTGCGAGCTACC
Found at i:68972189 original size:39 final size:39
Alignment explanation
Indices: 68972135--68972296 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
68972125 TGTGAATGAA
68972135 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
68972174 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
68972213 TGTGCGAGCTATGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
68972251 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
68972291 TGTGCG
1 TGTGCG
68972297 GGTTACCATA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 35 0.31
39 63 0.55
40 16 0.14
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:68972265 original size:77 final size:79
Alignment explanation
Indices: 68972146--68972296 Score: 261
Period size: 77 Copynumber: 1.9 Consensus size: 79
68972136 GTGCGAATTG
68972146 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
68972210 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
* *
68972224 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
*
68972288 ATTTGTGCG
66 AATTGTGCG
68972297 GGTTACCATA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 36 0.52
78 33 0.48
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:68972312 original size:77 final size:78
Alignment explanation
Indices: 68972148--68972325 Score: 234
Period size: 77 Copynumber: 2.3 Consensus size: 78
68972138 GCGAATTGTG
*
68972148 ATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 ATATACGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
**
68972213 TGTGCGAGCTATG
66 TGTGCGAGCTACC
* * * *
68972226 ATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCAT
1 ATATACGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAA
* *
68972290 TTGTGCGGGTTACC
65 TTGTGCGAGCTACC
*
68972304 ATA-ACGGGCTATGTCCCGAAGG
1 ATATACGGGCTAAG-CCCGAAGG
68972326 TGTTTTGAAC
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
77 44 0.50
78 37 0.42
79 7 0.08
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.23
Consensus pattern (78 bp):
ATATACGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
TGTGCGAGCTACC
Found at i:68975960 original size:34 final size:34
Alignment explanation
Indices: 68975917--68975987 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
68975907 CAACAACAGA
68975917 GATGGTTAGAATTGTTGAAAGATTAAGAGCTAGT
1 GATGGTTAGAATTGTTGAAAGATTAAGAGCTAGT
*
68975951 GATGGTTAGAATTGTTGAAAGGTTAAGAGCTAGT
1 GATGGTTAGAATTGTTGAAAGATTAAGAGCTAGT
68975985 GAT
1 GAT
68975988 TGACTACCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.34, C:0.03, G:0.31, T:0.32
Consensus pattern (34 bp):
GATGGTTAGAATTGTTGAAAGATTAAGAGCTAGT
Found at i:68982493 original size:39 final size:39
Alignment explanation
Indices: 68982435--68982618 Score: 239
Period size: 39 Copynumber: 4.7 Consensus size: 39
68982425 TTCCAACCCA
68982435 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* *
68982474 AATACCTTCGAGACTTAGCCCGGATATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
* * *
68982513 AATGCCTTCGGGACTTAGCCCGGACATAACACTAGCAAG
1 AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
*
68982552 AATGCTTTCGGGACTTAGCCCGGATATAA-ATCTCA-CAC-
1 AATGCCTTCGGGACTTAGCCCGGATATAACA-C-CAGCACG
* * * *
68982590 AAGGCCTGCGGGTCTTAGCCCGGTTATAA
1 AATGCCTTCGGGACTTAGCCCGGATATAA
68982619 TCCTCAATTA
Statistics
Matches: 127, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
38 25 0.20
39 101 0.80
40 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACG
Found at i:68988195 original size:39 final size:39
Alignment explanation
Indices: 68988141--68988292 Score: 210
Period size: 39 Copynumber: 4.1 Consensus size: 39
68988131 TGTAAATATA
68988141 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
68988180 TATATGCGAGAATTATATCCAGACTTCAGGTCCGCA-G-
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
68988217 -----GCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* * *
68988251 TATATGCGAGAATAATATCCGGACTTTAGGTCCACAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
68988290 TAT
1 TAT
68988293 GTGCTGGACA
Statistics
Matches: 99, Mismatches: 7, Indels: 14
0.82 0.06 0.12
Matches are distributed among these distances:
32 29 0.29
33 1 0.01
38 1 0.01
39 68 0.69
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:68988226 original size:32 final size:32
Alignment explanation
Indices: 68988185--68988250 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
68988175 CAGGCTATAT
68988185 GCGAGAATTATATCCAGACTTCAGGTCCGCAG
1 GCGAGAATTATATCCAGACTTCAGGTCCGCAG
* *
68988217 GCGAGAATTATATCCGGACTTCATGTCCGCAG
1 GCGAGAATTATATCCAGACTTCAGGTCCGCAG
68988249 GC
1 GC
68988251 TATATGCGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (32 bp):
GCGAGAATTATATCCAGACTTCAGGTCCGCAG
Found at i:68988233 original size:71 final size:71
Alignment explanation
Indices: 68988146--68988289 Score: 243
Period size: 71 Copynumber: 2.0 Consensus size: 71
68988136 ATATATATAT
*
68988146 GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGCGAGAATTATATCCAGACTTCAGGT
1 GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGCGAGAATAATATCCAGACTTCAGGT
*
68988211 CCGCAG
66 CCACAG
* * *
68988217 GCGAGAATTATATCCGGACTTCATGTCCGCAGGCTATATGCGAGAATAATATCCGGACTTTAGGT
1 GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGCGAGAATAATATCCAGACTTCAGGT
68988282 CCACAG
66 CCACAG
68988288 GC
1 GC
68988290 TATGTGCTGG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (71 bp):
GCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATATGCGAGAATAATATCCAGACTTCAGGT
CCACAG
Found at i:68989940 original size:40 final size:40
Alignment explanation
Indices: 68989891--68990042 Score: 166
Period size: 40 Copynumber: 3.8 Consensus size: 40
68989881 GTTATAATAG
* *
68989891 CTCGAACAAATGCCTTCGGGA-CTTAACCCGGATTTGGGAA
1 CTCGCACAAATGCCTTC-GGATCTTAGCCCGGATTTGGGAA
* * *
68989931 CTCGCACAAATGCCTTCGGATCTTAGTCCGAATTTTGGAA
1 CTCGCACAAATGCCTTCGGATCTTAGCCCGGATTTGGGAA
* * **
68989971 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCGGATCTTAGCCCGGATTTGGGAA
*
68990011 CTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 C-TCGCACAAATGCCTTC-GGATCTTAGCCCGGA
68990043 CATCATTCGA
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 83 0.86
41 11 0.11
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGATCTTAGCCCGGATTTGGGAA
Found at i:68998025 original size:40 final size:40
Alignment explanation
Indices: 68997913--68998065 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
68997903 TCCGGATTAG
* * * * ***
68997913 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
68997953 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
68997993 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
68998033 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
68998066 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:69002478 original size:17 final size:19
Alignment explanation
Indices: 69002455--69002500 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
69002445 AAGAAGCATG
69002455 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
69002473 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
69002491 AATCATGCTC
1 AATCATGCTC
69002501 TTTTCAACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:69005020 original size:39 final size:39
Alignment explanation
Indices: 69004966--69005085 Score: 204
Period size: 39 Copynumber: 3.1 Consensus size: 39
69004956 CATGTAAATA
69004966 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
69005005 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* * *
69005044 TATATGCGAGAATAATATCTGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
69005083 TAT
1 TAT
69005086 GTGCTGGACA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:69013729 original size:42 final size:42
Alignment explanation
Indices: 69013670--69013829 Score: 162
Period size: 42 Copynumber: 3.8 Consensus size: 42
69013660 TTAAGGTTAC
* *
69013670 TGAGACTAT-GTGTAAGACCATATCTGGGATATGTCATCAATA
1 TGAGACT-TCGTGTAAGACCATATCTGGGATATGACATCAATG
** *
69013712 TGAGACTTCGTGTAAGACCATGCCTAGGATATGACATCAATG
1 TGAGACTTCGTGTAAGACCATATCTGGGATATGACATCAATG
* * * * * *
69013754 TGATATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATG
1 TGAGACTTCGTGTAAGACCATATCTGGGATA-TGACATCAATG
* *
69013797 CGAGA-TTACATGTAAGACCATATCTGGGATATG
1 TGAGACTT-CGTGTAAGACCATATCTGGGATATG
69013830 GCATTGGTAT
Statistics
Matches: 97, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 64 0.66
43 32 0.33
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
TGAGACTTCGTGTAAGACCATATCTGGGATATGACATCAATG
Found at i:69016374 original size:40 final size:40
Alignment explanation
Indices: 69016304--69016517 Score: 360
Period size: 40 Copynumber: 5.4 Consensus size: 40
69016294 AAACCAAGTA
* ** *
69016304 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGTTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
69016343 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
69016383 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69016423 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69016463 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
69016503 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
69016518 TCGGTTGTCA
Statistics
Matches: 167, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 14 0.08
40 153 0.92
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:69027357 original size:20 final size:20
Alignment explanation
Indices: 69027313--69027357 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
69027303 TCTCAAACTC
*
69027313 CTTTTTCAACTATATCTTTA
1 CTTTTTCAACTATATCTTGA
*
69027333 GTTTTTCAATCTAT-TCTTGA
1 CTTTTTCAA-CTATATCTTGA
69027353 CTTTT
1 CTTTT
69027358 GGAAGCTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.20, C:0.18, G:0.04, T:0.58
Consensus pattern (20 bp):
CTTTTTCAACTATATCTTGA
Found at i:69032843 original size:40 final size:40
Alignment explanation
Indices: 69032799--69032902 Score: 154
Period size: 40 Copynumber: 2.6 Consensus size: 40
69032789 ATATCACGAT
*
69032799 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAACAAC
* * *
69032839 TTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCAC
1 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAACAAC
* *
69032879 TAGCACAATTGCCTTCGGGTCTTA
1 TTGCACAAATGCCTTCGGGTCTTA
69032903 ACCCAGATAT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (40 bp):
TTGCACAAATGCCTTCGGGTCTTAGCCCGGATGTAACAAC
Found at i:69035720 original size:28 final size:27
Alignment explanation
Indices: 69035688--69035770 Score: 103
Period size: 28 Copynumber: 3.0 Consensus size: 27
69035678 AACACACCAG
* *
69035688 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCC-AAACACACCAGAATAA
*
69035716 TATAATCCTCCGAAACACACTAGAATAA
1 TATAATCCTCC-AAACACACCAGAATAA
*
69035744 TATAATCCATCCAAACACACTAGAATA
1 TATAATCC-TCCAAACACACCAGAATA
69035771 GCACAGAGTG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 47 0.94
29 3 0.06
ACGTcount: A:0.46, C:0.28, G:0.05, T:0.22
Consensus pattern (27 bp):
TATAATCCTCCAAACACACCAGAATAA
Found at i:69035835 original size:13 final size:14
Alignment explanation
Indices: 69035811--69035840 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
69035801 GGACATAAAC
69035811 ATCAACATCTCCAA
1 ATCAACATCTCCAA
69035825 ATCAA-ATCTCCAA
1 ATCAACATCTCCAA
69035838 ATC
1 ATC
69035841 CCTTCTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.23
Consensus pattern (14 bp):
ATCAACATCTCCAA
Found at i:69036334 original size:36 final size:36
Alignment explanation
Indices: 69036294--69036373 Score: 142
Period size: 36 Copynumber: 2.2 Consensus size: 36
69036284 TATCCTATTT
* *
69036294 TCAATTTAATTCTAACTAAACTTACTTATTCTTAAC
1 TCAATTCAATTCTAAATAAACTTACTTATTCTTAAC
69036330 TCAATTCAATTCTAAATAAACTTACTTATTCTTAAC
1 TCAATTCAATTCTAAATAAACTTACTTATTCTTAAC
69036366 TCAATTCA
1 TCAATTCA
69036374 TACTTTGTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (36 bp):
TCAATTCAATTCTAAATAAACTTACTTATTCTTAAC
Found at i:69052796 original size:17 final size:19
Alignment explanation
Indices: 69052754--69052799 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
69052744 ATGAAATTTT
*
69052754 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
69052773 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
69052791 AA-TATTATT
1 AATTATTATT
69052800 GTATGTATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 7 0.28
18 4 0.16
19 14 0.56
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:69053717 original size:15 final size:16
Alignment explanation
Indices: 69053688--69053717 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69053678 TAGGATTCAG
69053688 TTTTTTTCTTCTTCTA
1 TTTTTTTCTTCTTCTA
69053704 TTTTTTTCTT-TTCT
1 TTTTTTTCTTCTTCT
69053718 CCTCTCTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTTTCTTCTTCTA
Found at i:69053760 original size:15 final size:15
Alignment explanation
Indices: 69053739--69053803 Score: 68
Period size: 15 Copynumber: 4.7 Consensus size: 15
69053729 CTACTTCCTT
69053739 TCTTCTTCTTCTTTC
1 TCTTCTTCTTCTTTC
*
69053754 CCTTCTT-TTCTTT-
1 TCTTCTTCTTCTTTC
69053767 TCTT-TTC-T-TTTC
1 TCTTCTTCTTCTTTC
* *
69053779 TCTTCATCTACTTTC
1 TCTTCTTCTTCTTTC
69053794 TCTTCTTCTT
1 TCTTCTTCTT
69053804 TTCCTCCATA
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
11 3 0.08
12 7 0.18
13 5 0.13
14 6 0.15
15 18 0.46
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (15 bp):
TCTTCTTCTTCTTTC
Found at i:69053798 original size:52 final size:54
Alignment explanation
Indices: 69053698--69053804 Score: 139
Period size: 57 Copynumber: 2.0 Consensus size: 54
69053688 TTTTTTTCTT
69053698 CTTCTATTTTTTTCTTTTCTCCTCTCTTCATCTACTTCCTTTCTTCTTCTTCTTTCC
1 CTTCTATTTTTTTCTTTTCTCCTCTCTTCATCTA---CCTTTCTTCTTCTTCTTTCC
**
69053755 CTTCT-TTTCTTTTCTTTTCTTTTCTCTTCATCTA-CTTTC-TCTTCTTCTTT
1 CTTCTATTT-TTTTCTTTTCTCCTCTCTTCATCTACCTTTCTTCTTCTTCTTT
69053805 TCCTCCATAG
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
52 11 0.23
53 5 0.11
56 3 0.06
57 28 0.60
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.64
Consensus pattern (54 bp):
CTTCTATTTTTTTCTTTTCTCCTCTCTTCATCTACCTTTCTTCTTCTTCTTTCC
Found at i:69059778 original size:12 final size:12
Alignment explanation
Indices: 69059756--69059788 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
69059746 TTTAGGAAAC
69059756 AAAA-CAAAATT
1 AAAATCAAAATT
*
69059767 AAAATTAAAATT
1 AAAATCAAAATT
69059779 AAAATCAAAA
1 AAAATCAAAA
69059789 AAAAAATGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAATCAAAATT
Found at i:69069246 original size:22 final size:24
Alignment explanation
Indices: 69069218--69069262 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
69069208 TTTTTTTTCA
69069218 ATTTTAA-CTTTTAT-TCAAAAAC
1 ATTTTAATCTTTTATATCAAAAAC
*
69069240 ATTTTAATTTTTTATATCAAAAA
1 ATTTTAATCTTTTATATCAAAAA
69069263 ATATTATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 7 0.35
23 6 0.30
24 7 0.35
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (24 bp):
ATTTTAATCTTTTATATCAAAAAC
Found at i:69069404 original size:18 final size:18
Alignment explanation
Indices: 69069381--69069417 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
69069371 ATTTAAGGCC
69069381 TAAATTAAAAAATTGACA
1 TAAATTAAAAAATTGACA
* *
69069399 TAAATTCAAAATTTGACA
1 TAAATTAAAAAATTGACA
69069417 T
1 T
69069418 TCATTTTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.32
Consensus pattern (18 bp):
TAAATTAAAAAATTGACA
Found at i:69070512 original size:158 final size:158
Alignment explanation
Indices: 69070224--69070542 Score: 620
Period size: 158 Copynumber: 2.0 Consensus size: 158
69070214 TGCCCTCCTG
*
69070224 ATAGTCTTATTAATGTTATTGAACATAATAAGGGCTAGGTCAGACACCTATCAGAATGGATAGAA
1 ATAGTCTTATTAATGTTATTGAACATAATAAGGGCTAGGTCAGAAACCTATCAGAATGGATAGAA
69070289 TCAAGCCACCAATAATCAGTGTTATAAAGCTAGACATGTTTCTTGATAGGACGCCAATTCCAAGT
66 TCAAGCCACCAATAATCAGTGTTATAAAGCTAGACATGTTTCTTGATAGGACGCCAATTCCAAGT
69070354 GATAATCAAATGGAGAACACGATCATGA
131 GATAATCAAATGGAGAACACGATCATGA
69070382 ATAGTCTTATTAATGTTATTGAACATAATAAGGGCTAGGTCAGAAACCTATCAGAATGGATAGAA
1 ATAGTCTTATTAATGTTATTGAACATAATAAGGGCTAGGTCAGAAACCTATCAGAATGGATAGAA
*
69070447 TCAAGCCACCAATAATCAGTGTTGTAAAGCTAGACATGTTTCTTGATAGGACGCCAATTCCAAGT
66 TCAAGCCACCAATAATCAGTGTTATAAAGCTAGACATGTTTCTTGATAGGACGCCAATTCCAAGT
69070512 GATAATCAAATGGAGAACACGATCATGA
131 GATAATCAAATGGAGAACACGATCATGA
69070540 ATA
1 ATA
69070543 TTAAGTTTGG
Statistics
Matches: 159, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
158 159 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (158 bp):
ATAGTCTTATTAATGTTATTGAACATAATAAGGGCTAGGTCAGAAACCTATCAGAATGGATAGAA
TCAAGCCACCAATAATCAGTGTTATAAAGCTAGACATGTTTCTTGATAGGACGCCAATTCCAAGT
GATAATCAAATGGAGAACACGATCATGA
Found at i:69078665 original size:20 final size:20
Alignment explanation
Indices: 69078640--69078687 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
69078630 ATTTTTCAAG
69078640 TTAAAAGAATTCTT-ACTTGA
1 TTAAAAGAATT-TTGACTTGA
**
69078660 TTAAAATTATTTTGACTTGA
1 TTAAAAGAATTTTGACTTGA
69078680 TTATAAAG
1 TTA-AAAG
69078688 TTGATTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.44
Consensus pattern (20 bp):
TTAAAAGAATTTTGACTTGA
Found at i:69078806 original size:22 final size:24
Alignment explanation
Indices: 69078780--69078823 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
69078770 ATTTTGTTTA
69078780 ATTTTAACTT-TTAT-TCAAAAAC
1 ATTTTAACTTATTATATCAAAAAC
*
69078802 ATTTTAATTTATTATATCAAAA
1 ATTTTAACTTATTATATCAAAA
69078824 CATATTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (24 bp):
ATTTTAACTTATTATATCAAAAAC
Found at i:69081751 original size:57 final size:58
Alignment explanation
Indices: 69081682--69081816 Score: 157
Period size: 58 Copynumber: 2.3 Consensus size: 58
69081672 AATATCATGA
* * *
69081682 ACTAACTTGAATAAAAAAA-TTCAAATCCTAATATGAGAACAATTA-CTAAGTTCAAAG
1 ACTAACTTGAATAAAAAAACTTCAAACCCTAAAATAAGAACAATTATC-AAGTTCAAAG
* * *
69081739 ACTAACTTGAATAAAAAAACTTGAAGCCCTAAAATAAGAACAATTATCAAGTTTAAAG
1 ACTAACTTGAATAAAAAAACTTCAAACCCTAAAATAAGAACAATTATCAAGTTCAAAG
* * *
69081797 ATTATCTTGGATAAAGAAAA
1 ACTAACTTGAATAAA-AAAA
69081817 AATTCAAAAC
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
57 19 0.29
58 42 0.64
59 5 0.08
ACGTcount: A:0.51, C:0.13, G:0.10, T:0.26
Consensus pattern (58 bp):
ACTAACTTGAATAAAAAAACTTCAAACCCTAAAATAAGAACAATTATCAAGTTCAAAG
Found at i:69081938 original size:77 final size:78
Alignment explanation
Indices: 69081835--69082011 Score: 225
Period size: 77 Copynumber: 2.3 Consensus size: 78
69081825 ACCAATGTGA
* * * *
69081835 AAATGTCAATATAAATTTTTTTTTCACAAGATAAA-TTGGAAAATATATAAATAAAT-AAAAA-T
1 AAATGTTAATATAAATTTTATCTTCACAAGATAAACTCGG-AAATATATAAAT-AATGAAAAATT
*
69081897 TAAAATATGCAATAT
64 TAAAATATGCAACAT
**
69081912 AAATGTTAATATAAATTTTATCTTCACAAGATAAACTCGGAAATATATAAATTTTGAAAAATTTA
1 AAATGTTAATATAAATTTTATCTTCACAAGATAAACTCGGAAATATATAAATAATGAAAAATTTA
69081977 AAATATGCAACAT
66 AAATATGCAACAT
* * *
69081990 ATATGCTAATATAAACTTTATC
1 AAATGTTAATATAAATTTTATC
69082012 ATATATGCTA
Statistics
Matches: 87, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
76 1 0.01
77 49 0.56
78 37 0.43
ACGTcount: A:0.50, C:0.08, G:0.07, T:0.36
Consensus pattern (78 bp):
AAATGTTAATATAAATTTTATCTTCACAAGATAAACTCGGAAATATATAAATAATGAAAAATTTA
AAATATGCAACAT
Found at i:69082014 original size:24 final size:24
Alignment explanation
Indices: 69081987--69082035 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
69081977 AAATATGCAA
69081987 CATATATGCTAATATAAACTTTAT
1 CATATATGCTAATATAAACTTTAT
69082011 CATATATGCTAATATAAACTTTAT
1 CATATATGCTAATATAAACTTTAT
69082035 C
1 C
69082036 TTCATGAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.14, G:0.04, T:0.41
Consensus pattern (24 bp):
CATATATGCTAATATAAACTTTAT
Found at i:69083880 original size:138 final size:138
Alignment explanation
Indices: 69083420--69083977 Score: 897
Period size: 138 Copynumber: 4.1 Consensus size: 138
69083410 TAGAAAAATG
* *
69083420 AATTATATTCTTTCCAAAAGAATATTAACTTCCATGTCTTTTATATTTTGATCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
69083485 TATAATTGTTTATATTAATAAATTCAATAAAATATATACAATTAATATTTTGTATA-AATCAAAT
66 TATAATTGTTTATATTAATTAATTCAGTAAAATATATACAATTAATATTTTGTA-AGAATCAAAT
69083549 TCATATATT
130 TCATATATT
* *
69083558 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAT
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * * * *
69083623 TATAACTGTTTACATTAATTAATTCGGTAAAATATA-AAAATTAATATTTTGTATGAATCAAATT
66 TATAATTGTTTATATTAATTAATTCAGTAAAATATATACAATTAATATTTTGTAAGAATCAAATT
*
69083687 CA-AAATT
131 CATATATT
* *
69083694 AATTATATTATTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGATCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
** * *
69083759 TATAATTGTCCATATTAATTAATTCAGTAAAATATATATAATTAATATTTTATAAGAATCAAATT
66 TATAATTGTTTATATTAATTAATTCAGTAAAATATATACAATTAATATTTTGTAAGAATCAAATT
69083824 CATATATT
131 CATATATT
* *
69083832 AATTATATTCTTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
*
69083897 TATAATTGTTTATATTAATTAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAATTGTTTATATTAATTAATTCAGTAAAATATATACAATTAATATTTTGTAAGAATCAAATT
69083962 CATATATT
131 CATATATT
69083970 AATTATAT
1 AATTATAT
69083978 CCATGTTCTC
Statistics
Matches: 383, Mismatches: 34, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
136 96 0.25
137 54 0.14
138 233 0.61
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAATTGTTTATATTAATTAATTCAGTAAAATATATACAATTAATATTTTGTAAGAATCAAATT
CATATATT
Found at i:69083916 original size:274 final size:275
Alignment explanation
Indices: 69083414--69083977 Score: 952
Period size: 274 Copynumber: 2.1 Consensus size: 275
69083404 GAAAGTTAGA
* *
69083414 AAAATGAATTATATTCTTTCCAAAAGAATATTAACTTCCATGTCTTTTATATTTTGATCGAAATT
1 AAAATTAATTATATTATTTCCAAAAGAATATTAACTTCCATGTCTTTTATATTTTGATCGAAATT
** *
69083479 AATTAATATAATTGTTTATATTAATAAATTCAATAAAATATATACAATTAATATTTTGTATAAAT
66 AATTAATATAATTGTCCATATTAATAAATTCAATAAAATATATACAATTAATATTTTATATAAAT
69083544 CAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGA
131 CAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGA
* *
69083609 CCGAAATTAATTATTATAACTGTTTACATTAATTAATTCGGTAAAATATA-AAAATTAATATTTT
196 CCGAAATTAATTAATATAACTGTTTACATTAATTAATTCAGTAAAATATATAAAATTAATATTTT
69083673 GTATGAATCAAATTC
261 GTATGAATCAAATTC
*
69083688 AAAATTAATTATATTATTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGATCGAAATT
1 AAAATTAATTATATTATTTCCAAAAGAATATTAACTTCCATGTCTTTTATATTTTGATCGAAATT
* * *
69083753 AATTAATATAATTGTCCATATTAATTAATTCAGTAAAATATATATAATTAATATTTTATA-AGAA
66 AATTAATATAATTGTCCATATTAATAAATTCAATAAAATATATACAATTAATATTTTATATA-AA
*
69083817 TCAAATTCATATATTAATTATATTCTTTTCAAAAGAATATTAATTTTCATGTCTTTTATATTTTG
130 TCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTG
* * *
69083882 ACCGAAATTAATTAATATAATTGTTTATATTAATTAATTCAGTAAAATATATACAATTAATATTT
195 ACCGAAATTAATTAATATAACTGTTTACATTAATTAATTCAGTAAAATATATAAAATTAATATTT
69083947 TGTATGAATCAAATTC
260 TGTATGAATCAAATTC
*
69083963 ATATATTAATTATAT
1 A-AAATTAATTATAT
69083978 CCATGTTCTC
Statistics
Matches: 271, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
273 1 0.00
274 229 0.85
275 29 0.11
276 12 0.04
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.45
Consensus pattern (275 bp):
AAAATTAATTATATTATTTCCAAAAGAATATTAACTTCCATGTCTTTTATATTTTGATCGAAATT
AATTAATATAATTGTCCATATTAATAAATTCAATAAAATATATACAATTAATATTTTATATAAAT
CAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGA
CCGAAATTAATTAATATAACTGTTTACATTAATTAATTCAGTAAAATATATAAAATTAATATTTT
GTATGAATCAAATTC
Found at i:69086769 original size:29 final size:27
Alignment explanation
Indices: 69086735--69086837 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
69086725 TACTCAATCA
*
69086735 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
69086764 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
69086793 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
69086822 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
69086838 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:69094798 original size:29 final size:29
Alignment explanation
Indices: 69094764--69094839 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
69094754 TACTCAATCA
* * *
69094764 CGCACACTTAGTGCCATGT-GATTCAAGCC
1 CGCACACTTAGTGCCATATAG-TCCAAACC
* *
69094793 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATAGTCCAAACC
69094822 CGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
69094840 CATTACAAGC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
29 39 0.98
30 1 0.03
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAGTCCAAACC
Found at i:69094861 original size:25 final size:25
Alignment explanation
Indices: 69094827--69094875 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
69094817 AAACTCGCAC
69094827 ACTTAGTGCCATACATTACAAGCTT
1 ACTTAGTGCCATACATTACAAGCTT
69094852 ACTTAGTGCCATACATTACAAGCT
1 ACTTAGTGCCATACATTACAAGCT
69094876 CGCACACTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (25 bp):
ACTTAGTGCCATACATTACAAGCTT
Found at i:69099559 original size:18 final size:18
Alignment explanation
Indices: 69099536--69099574 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
69099526 TTTTCCTTTG
*
69099536 TTGGGCTTGGTCTTACCA
1 TTGGGCTTGGCCTTACCA
*
69099554 TTGGGCTTGGCCTTGCCA
1 TTGGGCTTGGCCTTACCA
69099572 TTG
1 TTG
69099575 TCCTTAGGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.23, G:0.31, T:0.38
Consensus pattern (18 bp):
TTGGGCTTGGCCTTACCA
Found at i:69102232 original size:289 final size:288
Alignment explanation
Indices: 69101629--69102497 Score: 1639
Period size: 289 Copynumber: 3.0 Consensus size: 288
69101619 TCTATTTCTG
69101629 GAGCTTGCATCATGTATTTAAGATAAGCCAAATCGAATGAAATAGTAGATCTTCTCAAGATAATA
1 GAGCTTGCATCATGTATTTAAGATAAGCCAAATCGAATGAAATAGTAGATCTTCTCAAGATAATA
* *
69101694 TCATGGTCAATAAAAGTAATAAAAATTCATCCAGTAATTCCAACCTGATGACATTAGCTTTCATA
66 TCATGGTCAATAAAAGTAATAAAAATTCATCCAGTAATTCCAACCTGATGATATTAGC--TCATG
* *
69101759 GGTTGGGAATCAAAATCCAAAATATCAACATCATTCAACATTATTATCTACCATTTAAAAATCAA
129 GGTTGGGAATTAAAATCCAAAATATCAACATCATTCAACATTATTATCCACCATTTAAAAATCAA
69101824 AAAAATCAATTAATAGAATGAAGGTAGAACTACAAGAAGCTTTTGCCACTCTAACTTTAATTCTA
194 AAAAATCAATTAATAGAATGAAGGTAGAACTACAAGAAGCTTTTGCCACTCTAACTTTAATTCTA
69101889 ATGCTACCAAATCGTGCAAGATCCAAGGTT
259 ATGCTACCAAATCGTGCAAGATCCAAGGTT
69101919 GAGCTTGCATCATGTATTTAAGATAAGCCAAATCGAATGAAATAGTAGATCTTCTCAAGATAATA
1 GAGCTTGCATCATGTATTTAAGATAAGCCAAATCGAATGAAATAGTAGATCTTCTCAAGATAATA
*
69101984 TCATGGTCAATAAAAGTAATAAAAATTAATCCAGTAATTCCAACCTGATGATATTAGCTCATGGG
66 TCATGGTCAATAAAAGTAATAAAAATTCATCCAGTAATTCCAACCTGATGATATTAGCTCATGGG
*
69102049 TTGGGAATTAAAATCCAAAATATCAACATCATTCAACATTATTATCCACCATTTAAAAATAAAAA
131 TTGGGAATTAAAATCCAAAATATCAACATCATTCAACATTATTATCCACCATTTAAAAAT-CAAA
69102114 AAAATCAATTAATAGAATGAAGGTAGAACTACAAGAAGCTTTTGCCACTCTAACTTTAATTCTAA
195 AAAATCAATTAATAGAATGAAGGTAGAACTACAAGAAGCTTTTGCCACTCTAACTTTAATTCTAA
69102179 TGCTACCAAATCGTGCAAGATCCAAGGTT
260 TGCTACCAAATCGTGCAAGATCCAAGGTT
*
69102208 GAGCTTGCATCATGTATTTAAGATAAGCCAAATTGAATGAAATAGTAGATCTTCTCAAGATAATA
1 GAGCTTGCATCATGTATTTAAGATAAGCCAAATCGAATGAAATAGTAGATCTTCTCAAGATAATA
69102273 TCATGGTCAATAAAAGTAATAAAAATTCATCCAGTAATTCCAACCTGATGATATTAGCTCATGGG
66 TCATGGTCAATAAAAGTAATAAAAATTCATCCAGTAATTCCAACCTGATGATATTAGCTCATGGG
*
69102338 TTGGGAATTAAAATCCAAAATATCAACATCATTCAACATTATTATCCACCATTTAAAAATCAAAG
131 TTGGGAATTAAAATCCAAAATATCAACATCATTCAACATTATTATCCACCATTTAAAAATCAAAA
69102403 AAATCAATTAATAGAATGAAGGTAGAACTACAAGAAGCTTTTGCCACTCTAACTTTAATTCTAAT
196 AAATCAATTAATAGAATGAAGGTAGAACTACAAGAAGCTTTTGCCACTCTAACTTTAATTCTAAT
69102468 GCTACCAAATCGTGCAAGATCCAAGGTT
261 GCTACCAAATCGTGCAAGATCCAAGGTT
69102496 GA
1 GA
69102498 ATGCGTCGTC
Statistics
Matches: 568, Mismatches: 10, Indels: 4
0.98 0.02 0.01
Matches are distributed among these distances:
288 162 0.29
289 285 0.50
290 121 0.21
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (288 bp):
GAGCTTGCATCATGTATTTAAGATAAGCCAAATCGAATGAAATAGTAGATCTTCTCAAGATAATA
TCATGGTCAATAAAAGTAATAAAAATTCATCCAGTAATTCCAACCTGATGATATTAGCTCATGGG
TTGGGAATTAAAATCCAAAATATCAACATCATTCAACATTATTATCCACCATTTAAAAATCAAAA
AAATCAATTAATAGAATGAAGGTAGAACTACAAGAAGCTTTTGCCACTCTAACTTTAATTCTAAT
GCTACCAAATCGTGCAAGATCCAAGGTT
Found at i:69104169 original size:27 final size:27
Alignment explanation
Indices: 69104139--69104210 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
69104129 AGCATAGCTG
69104139 CCAGAAACAGTAAATGTGGCAAAGCCA
1 CCAGAAACAGTAAATGTGGCAAAGCCA
* * * *
69104166 CCAGTATCAGTAATTGTGGCATAGCCA
1 CCAGAAACAGTAAATGTGGCAAAGCCA
*
69104193 CCA-ATAATAGTAAATGTG
1 CCAGA-AACAGTAAATGTG
69104211 ACATAGTCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (27 bp):
CCAGAAACAGTAAATGTGGCAAAGCCA
Done.