Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 229 of 335
Found at i:69104215 original size:27 final size:26
Alignment explanation
Indices: 69104147--69104230 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 26
69104137 TGCCAGAAAC
* *
69104147 AGTAAATGTGGCAAAGCCACCAGTAT
1 AGTAAATGTGGCATAGCCACCAATAT
*
69104173 CAGTAATTGTGGCATAGCCACCAATAAT
1 -AGTAAATGTGGCATAGCCACCAAT-AT
* *
69104201 AGTAAATGTGACATAGTCACCAATAT
1 AGTAAATGTGGCATAGCCACCAATAT
69104227 AGTA
1 AGTA
69104231 CTTCCTCTGT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 6 0.12
27 42 0.84
28 2 0.04
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (26 bp):
AGTAAATGTGGCATAGCCACCAATAT
Found at i:69104397 original size:27 final size:27
Alignment explanation
Indices: 69104366--69104508 Score: 196
Period size: 27 Copynumber: 5.3 Consensus size: 27
69104356 GGCATAATCA
* * *
69104366 TCATTTTACCATACAGGGGTATTAAGG
1 TCATTTTACCCTACAGGGGCATTACGG
*
69104393 TCATTTTACCATACAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* *
69104420 TTATTTTACCCTACAAGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
*
69104447 TCATTTTACCCTACAGGGACATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* * *
69104474 TCATTTTACCCTATAGGGGTATTAGGG
1 TCATTTTACCCTACAGGGGCATTACGG
69104501 TCATTTTA
1 TCATTTTA
69104509 TCTATATTGG
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACGG
Found at i:69106991 original size:27 final size:28
Alignment explanation
Indices: 69106934--69107003 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
69106924 AAACTTGTAC
*
69106934 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
69106962 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
69106989 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
69107004 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:69107014 original size:27 final size:27
Alignment explanation
Indices: 69106934--69107015 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
69106924 AAACTTGTAC
* * *
69106934 AGCACTAAGTGTGCGAGTTTGA-TCATGT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
69106962 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
69106989 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
69107016 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:69110460 original size:18 final size:18
Alignment explanation
Indices: 69110437--69110479 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
69110427 CAACTAATGG
69110437 CACTCACTAGAATTCCTA
1 CACTCACTAGAATTCCTA
**
69110455 CACTCACTAGAATTTTTA
1 CACTCACTAGAATTCCTA
69110473 CACTCAC
1 CACTCAC
69110480 AATGCACACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.30
Consensus pattern (18 bp):
CACTCACTAGAATTCCTA
Found at i:69113814 original size:40 final size:40
Alignment explanation
Indices: 69113759--69113839 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
69113749 GGGAAAAGTA
*
69113759 TGTTTAAATGTGTTGTAAGTCTTATAATGCTCCGTAACCT
1 TGTTTAAATGTGTTGTAAGTCGTATAATGCTCCGTAACCT
69113799 TGTTTAAATGTGTTGTAAGTCGTATAATGCTCCGTAACCT
1 TGTTTAAATGTGTTGTAAGTCGTATAATGCTCCGTAACCT
69113839 T
1 T
69113840 ATTCCAACGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.42
Consensus pattern (40 bp):
TGTTTAAATGTGTTGTAAGTCGTATAATGCTCCGTAACCT
Found at i:69114041 original size:98 final size:98
Alignment explanation
Indices: 69113872--69114069 Score: 369
Period size: 98 Copynumber: 2.0 Consensus size: 98
69113862 AGGGCTGTTA
69113872 CATCCATATAGTGCTCGCCCATAAACTTTCTCTTAAAAACCTCAAGAAAATATCCCCAAGTCAAA
1 CATCCATATAGTGCTCGCCCATAAACTTTCTCTTAAAAACCTCAAGAAAATATCCCCAAGTCAAA
69113937 TGATCAGTAGTAGTACCTCTCTTAATAGTATTC
66 TGATCAGTAGTAGTACCTCTCTTAATAGTATTC
* *
69113970 CATCCATATGGTGCTCGCCCATAAGCTTTCTCTTAAAAACCTCAAGAAAATATCCCCAAGTCAAA
1 CATCCATATAGTGCTCGCCCATAAACTTTCTCTTAAAAACCTCAAGAAAATATCCCCAAGTCAAA
*
69114035 TGATCAGTAGTAGTACCTTTCTTAATAGTATTC
66 TGATCAGTAGTAGTACCTCTCTTAATAGTATTC
69114068 CA
1 CA
69114070 CCAACGATAA
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 97 1.00
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (98 bp):
CATCCATATAGTGCTCGCCCATAAACTTTCTCTTAAAAACCTCAAGAAAATATCCCCAAGTCAAA
TGATCAGTAGTAGTACCTCTCTTAATAGTATTC
Found at i:69115581 original size:13 final size:13
Alignment explanation
Indices: 69115563--69115587 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69115553 AATAAACGAG
69115563 ACTCCCTTGGACC
1 ACTCCCTTGGACC
69115576 ACTCCCTTGGAC
1 ACTCCCTTGGAC
69115588 AACCACACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.44, G:0.16, T:0.24
Consensus pattern (13 bp):
ACTCCCTTGGACC
Found at i:69120952 original size:20 final size:20
Alignment explanation
Indices: 69120929--69121228 Score: 260
Period size: 20 Copynumber: 15.1 Consensus size: 20
69120919 GCACGAATGG
**
69120929 ACAAACAGGGGTACTGAAGT
1 ACAAACAGGGGTACCAAAGT
*
69120949 ACAAACAGGAGTACCAAAGT
1 ACAAACAGGGGTACCAAAGT
69120969 ACAAACAGGGGTACCAAAGT
1 ACAAACAGGGGTACCAAAGT
* * * *
69120989 ACATACAAGAGTACCAAAAT
1 ACAAACAGGGGTACCAAAGT
*
69121009 ATAAACAGGGGTACCAAAGT
1 ACAAACAGGGGTACCAAAGT
* * * * * *
69121029 GCATACAAGAGTATCGAAGT
1 ACAAACAGGGGTACCAAAGT
*
69121049 ACAAGCAGGGGTACCAAAGT
1 ACAAACAGGGGTACCAAAGT
* * *
69121069 ACATACAAGAGTACCAAAGT
1 ACAAACAGGGGTACCAAAGT
*
69121089 ACAAAC-GGGGTACCAAAGA
1 ACAAACAGGGGTACCAAAGT
69121108 ACAAACAGGGGTACCAAAGT
1 ACAAACAGGGGTACCAAAGT
* * *
69121128 ACATACATGAGTACCAAAGT
1 ACAAACAGGGGTACCAAAGT
* * ***
69121148 ACAAACAAGGCTATTGAAGT
1 ACAAACAGGGGTACCAAAGT
* ** * *
69121168 ACAAATAAAGGTATCGAAGT
1 ACAAACAGGGGTACCAAAGT
* *
69121188 ACAAATAGGGGTACCGAAGT
1 ACAAACAGGGGTACCAAAGT
** *
69121208 ACGTACAGGCGTACCAAAGT
1 ACAAACAGGGGTACCAAAGT
69121228 A
1 A
69121229 AATTCACATA
Statistics
Matches: 221, Mismatches: 58, Indels: 2
0.79 0.21 0.01
Matches are distributed among these distances:
19 16 0.07
20 205 0.93
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.14
Consensus pattern (20 bp):
ACAAACAGGGGTACCAAAGT
Found at i:69120973 original size:40 final size:40
Alignment explanation
Indices: 69120929--69121156 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
69120919 GCACGAATGG
** *
69120929 ACAAACAGGGGTACTGAAGTACAAACAGGAGTACCAAAGT
1 ACAAACAGGGGTACCAAAGTACAAACAAGAGTACCAAAGT
* *
69120969 ACAAACAGGGGTACCAAAGTACATACAAGAGTACCAAAAT
1 ACAAACAGGGGTACCAAAGTACAAACAAGAGTACCAAAGT
* * * * *
69121009 ATAAACAGGGGTACCAAAGTGCATACAAGAGTATCGAAGT
1 ACAAACAGGGGTACCAAAGTACAAACAAGAGTACCAAAGT
* *
69121049 ACAAGCAGGGGTACCAAAGTACATACAAGAGTACCAAAGT
1 ACAAACAGGGGTACCAAAGTACAAACAAGAGTACCAAAGT
* * *
69121089 ACAAAC-GGGGTACCAAAGAACAAACAGGGGTACCAAAGT
1 ACAAACAGGGGTACCAAAGTACAAACAAGAGTACCAAAGT
* * *
69121128 ACATACATGAGTACCAAAGTACAAACAAG
1 ACAAACAGGGGTACCAAAGTACAAACAAG
69121157 GCTATTGAAG
Statistics
Matches: 162, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 34 0.21
40 128 0.79
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.13
Consensus pattern (40 bp):
ACAAACAGGGGTACCAAAGTACAAACAAGAGTACCAAAGT
Found at i:69121134 original size:139 final size:139
Alignment explanation
Indices: 69120945--69121228 Score: 374
Period size: 139 Copynumber: 2.0 Consensus size: 139
69120935 AGGGGTACTG
*
69120945 AAGTACAAACAGGAGTACCAAAGTACAAACAGGGGTACCAAAGTACATACAAGAGTACCAAAATA
1 AAGTACAAACAGGAGTACCAAAGAACAAACAGGGGTACCAAAGTACATACAAGAGTACCAAAATA
* * * * *
69121010 TAAACAGGGGTACCAAAGTGC-ATACAAGAGTATCGAAGTACAAGCAGGGGTACCAAAGTACATA
66 CAAACAAGGCTACCAAAGTACAATA-AAG-GTATCGAAGTACAAACAGGGGTACCAAAGTACATA
69121074 CAAGAGTACCA
129 CAAGAGTACCA
* * *
69121085 AAGTACAAAC-GGGGTACCAAAGAACAAACAGGGGTACCAAAGTACATACATGAGTACCAAAGTA
1 AAGTACAAACAGGAGTACCAAAGAACAAACAGGGGTACCAAAGTACATACAAGAGTACCAAAATA
*** * * *
69121149 CAAACAAGGCTATTGAAGTACAAATAAAGGTATCGAAGTACAAATAGGGGTACCGAAGTACGTAC
66 CAAACAAGGCTACCAAAGTAC-AATAAAGGTATCGAAGTACAAACAGGGGTACCAAAGTACATAC
* *
69121214 AGGCGTACCA
130 AAGAGTACCA
69121224 AAGTA
1 AAGTA
69121229 AATTCACATA
Statistics
Matches: 125, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
139 109 0.87
140 13 0.10
141 3 0.02
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.14
Consensus pattern (139 bp):
AAGTACAAACAGGAGTACCAAAGAACAAACAGGGGTACCAAAGTACATACAAGAGTACCAAAATA
CAAACAAGGCTACCAAAGTACAATAAAGGTATCGAAGTACAAACAGGGGTACCAAAGTACATACA
AGAGTACCA
Found at i:69123394 original size:19 final size:19
Alignment explanation
Indices: 69123370--69123408 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
69123360 TGGCTCGGGC
69123370 GTGGTTCAACTATGGGGGT
1 GTGGTTCAACTATGGGGGT
* *
69123389 GTGGTTCTACTATGGTGGT
1 GTGGTTCAACTATGGGGGT
69123408 G
1 G
69123409 CGGAAAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.13, C:0.10, G:0.41, T:0.36
Consensus pattern (19 bp):
GTGGTTCAACTATGGGGGT
Found at i:69123476 original size:16 final size:18
Alignment explanation
Indices: 69123452--69123497 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
69123442 TTAATTGAAA
*
69123452 GAGAGGAGAA-AAAA-AG
1 GAGAAGAGAAGAAAATAG
*
69123468 GAGAAGAGAAGAAAATTG
1 GAGAAGAGAAGAAAATAG
69123486 GTAGAAGAGAAG
1 G-AGAAGAGAAG
69123498 GTGACTTGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 9 0.36
17 4 0.16
18 2 0.08
19 10 0.40
ACGTcount: A:0.57, C:0.00, G:0.37, T:0.07
Consensus pattern (18 bp):
GAGAAGAGAAGAAAATAG
Found at i:69133503 original size:17 final size:17
Alignment explanation
Indices: 69133478--69133513 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
69133468 AGAGAAGAAA
* *
69133478 AAAGTAAATAAGTAAGT
1 AAAGAAAATAAATAAGT
69133495 AAAGAAAATAAATAAGT
1 AAAGAAAATAAATAAGT
69133512 AA
1 AA
69133514 GTAATAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.14, T:0.19
Consensus pattern (17 bp):
AAAGAAAATAAATAAGT
Found at i:69133508 original size:21 final size:22
Alignment explanation
Indices: 69133477--69133517 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
69133467 AAGAGAAGAA
69133477 AAAAGTAAATAAGTAAGTAAAG
1 AAAAGTAAATAAGTAAGTAAAG
69133499 AAAA-TAAATAAGTAAGTAA
1 AAAAGTAAATAAGTAAGTAA
69133518 TAATAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.66, C:0.00, G:0.15, T:0.20
Consensus pattern (22 bp):
AAAAGTAAATAAGTAAGTAAAG
Found at i:69143777 original size:46 final size:46
Alignment explanation
Indices: 69143727--69143902 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
69143717 TATTTGGGCA
69143727 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
69143773 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
69143820 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
69143866 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69143903 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:69143882 original size:93 final size:93
Alignment explanation
Indices: 69143723--69143894 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69143713 TGGATATTTG
* *
69143723 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69143788 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
69143816 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69143881 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
69143895 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:69146854 original size:15 final size:15
Alignment explanation
Indices: 69146815--69146893 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
69146805 GTATCTTGGG
*
69146815 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
69146830 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
69146845 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
69146859 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
69146874 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
69146888 TTTCTT
1 TTTCTT
69146894 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:69146878 original size:29 final size:29
Alignment explanation
Indices: 69146806--69146892 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
69146796 CATAGTATCG
* * * *
69146806 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
69146836 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
69146865 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
69146893 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:69149321 original size:46 final size:46
Alignment explanation
Indices: 69149271--69149446 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
69149261 TATTTGGGCA
69149271 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
69149317 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
69149364 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
69149410 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69149447 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:69149426 original size:93 final size:93
Alignment explanation
Indices: 69149267--69149438 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69149257 TGGATATTTG
* *
69149267 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69149332 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
69149360 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69149425 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
69149439 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:69158599 original size:40 final size:40
Alignment explanation
Indices: 69158501--69158682 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
69158491 TCGAATGATG
* * * *
69158501 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
69158541 TCCGGACT-AGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
69158580 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
69158620 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTA-T-AA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69158658 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
69158683 AACGAGTAGT
Statistics
Matches: 127, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
37 23 0.18
38 2 0.02
39 28 0.22
40 74 0.58
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69158689 original size:77 final size:78
Alignment explanation
Indices: 69158553--69158714 Score: 179
Period size: 77 Copynumber: 2.1 Consensus size: 78
69158543 CGGACTAGAT
* **
69158553 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTCGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TACTA
*
69158618 AATCCGGGTTAAGTC
65 AATCC-GGTTAAATC
* * * *
69158633 CCGAAGGCATTTGTGCGAGCTA-T-AA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGTA
1 CCGAAGGCATTCGTGCGAGCTACTAAATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTACTA
* *
69158694 TATCCGGTTAAATT
65 AATCCGGTTAAATC
69158708 CCGAAGG
1 CCGAAGG
69158715 TACGTGATTC
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
75 14 0.20
76 9 0.13
77 25 0.35
78 2 0.03
79 1 0.01
80 20 0.28
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTCGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTACTAA
ATCCGGTTAAATC
Found at i:69161531 original size:27 final size:27
Alignment explanation
Indices: 69161501--69161552 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
69161491 ATATCATAAT
69161501 ACGTGGAAAAGCCACCAGAACAGTAAA
1 ACGTGGAAAAGCCACCAGAACAGTAAA
* *
69161528 ACGTGGCAAAGCCACCAGTACAGTA
1 ACGTGGAAAAGCCACCAGAACAGTA
69161553 CTTCCTCCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.25, G:0.23, T:0.10
Consensus pattern (27 bp):
ACGTGGAAAAGCCACCAGAACAGTAAA
Found at i:69163970 original size:15 final size:17
Alignment explanation
Indices: 69163940--69163972 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
69163930 GAGGATTTGA
69163940 AAATGAGTTAGAAAAAG
1 AAATGAGTTAGAAAAAG
69163957 AAATGAG-T-GAAAAAG
1 AAATGAGTTAGAAAAAG
69163972 A
1 A
69163973 TGCAAGTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.61, C:0.00, G:0.24, T:0.15
Consensus pattern (17 bp):
AAATGAGTTAGAAAAAG
Found at i:69166428 original size:18 final size:19
Alignment explanation
Indices: 69166391--69166431 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
69166381 ATTTAGAATC
69166391 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
69166410 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
69166428 AAAA
1 AAAA
69166432 TATCAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:69166433 original size:31 final size:31
Alignment explanation
Indices: 69166357--69166430 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
69166347 TCAAATTATC
*
69166357 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATA-TAAAATAAAAATAAAAATCTAGAA
*
69166389 TCAAA-ACTAAAATAAATAATAAAAA-CTAG-A
1 TTAAATA-TAAAATAAA-AATAAAAATCTAGAA
69166419 TTAAATATAAAA
1 TTAAATATAAAA
69166431 ATATCAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 10 0.28
31 14 0.39
32 12 0.33
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATCTAGAA
Found at i:69171397 original size:58 final size:58
Alignment explanation
Indices: 69171333--69171449 Score: 198
Period size: 58 Copynumber: 2.0 Consensus size: 58
69171323 AAAAAGAAAA
* *
69171333 TATTTCAGAAAGAAAAACGATGCTTTTAAGTTAAACAATTATGTTTTTTTGCAGCGTT
1 TATTTCAGAAAGAAAAACGACGCTTTTAAGTTAAACAATTATATTTTTTTGCAGCGTT
* *
69171391 TATTTCAGAAAGGAAAACGACGCTTTTAAGTTAAACAATTATATTTTTTTGCGGCGTT
1 TATTTCAGAAAGAAAAACGACGCTTTTAAGTTAAACAATTATATTTTTTTGCAGCGTT
69171449 T
1 T
69171450 TTAAAAACGC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.39
Consensus pattern (58 bp):
TATTTCAGAAAGAAAAACGACGCTTTTAAGTTAAACAATTATATTTTTTTGCAGCGTT
Found at i:69172455 original size:7 final size:7
Alignment explanation
Indices: 69172443--69172570 Score: 55
Period size: 7 Copynumber: 18.0 Consensus size: 7
69172433 CTAATTAATT
69172443 TAAACCC
1 TAAACCC
69172450 TAAACCTC
1 TAAACC-C
* *
69172458 TTAACCT
1 TAAACCC
* *
69172465 TTATCCC
1 TAAACCC
*
69172472 ATAAACAC
1 -TAAACCC
69172480 TAAACCC
1 TAAACCC
**
69172487 TAAACAT
1 TAAACCC
*
69172494 TTAACCC
1 TAAACCC
*
69172501 TTAACCC
1 TAAACCC
*
69172508 CAAACCC
1 TAAACCC
* *
69172515 TTACACCT
1 -TAAACCC
69172523 TAAACTCC
1 TAAAC-CC
69172531 --AACCC
1 TAAACCC
69172536 T-AACCC
1 TAAACCC
69172542 TTAAACCC
1 -TAAACCC
* *
69172550 TAAATCA
1 TAAACCC
*
69172557 TAATCCC
1 TAAACCC
69172564 TAAACCC
1 TAAACCC
69172571 ATAATTCATC
Statistics
Matches: 88, Mismatches: 26, Indels: 14
0.69 0.20 0.11
Matches are distributed among these distances:
5 2 0.02
6 8 0.09
7 58 0.66
8 20 0.23
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.23
Consensus pattern (7 bp):
TAAACCC
Found at i:69172639 original size:14 final size:14
Alignment explanation
Indices: 69172608--69172659 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
69172598 AGTTAACTCC
* *
69172608 TAAACCTTAAACCC
1 TAAACCATAAACCT
* *
69172622 TAAACCATATATCT
1 TAAACCATAAACCT
69172636 TAAACCATAAACCT
1 TAAACCATAAACCT
*
69172650 TAAACTATAA
1 TAAACCATAA
69172660 TGATAATTAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCATAAACCT
Found at i:69172873 original size:41 final size:41
Alignment explanation
Indices: 69172816--69173105 Score: 354
Period size: 41 Copynumber: 7.1 Consensus size: 41
69172806 GTTATATGAC
* * * * *
69172816 TTTTAGCGACGTTTTACCAAAAGCGCCGCTAATGTTCTAGT
1 TTTTAGTGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
*
69172857 TTTTAGTGGTGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGTGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
*
69172898 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGG-
1 TTTTAGTGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* *
69172938 TTTTAGTGGCATTTTACAGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGTGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * * *
69172979 TTTTAGCGGCGTTTTACTGAAAGCGCTGTTAATGCTCTGGT
1 TTTTAGTGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
*
69173020 TTTTAGCT-GCGTTTTACCGAAAGCGCAGCTAATGCTCT-GT
1 TTTTAG-TGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
* * * *
69173060 TTTTAGTGGCATTTTTTA-CTAAAACGCCGCTATTGCTCTGTGT
1 TTTTAGTGGC--GTTTTACCGAAAGCGCCGCTAATGCTCTG-GT
69173103 TTT
1 TTT
69173106 ACAATTTTTG
Statistics
Matches: 217, Mismatches: 25, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.00
40 47 0.22
41 159 0.73
42 5 0.02
43 5 0.02
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.37
Consensus pattern (41 bp):
TTTTAGTGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
Found at i:69173033 original size:122 final size:122
Alignment explanation
Indices: 69172827--69173105 Score: 400
Period size: 122 Copynumber: 2.3 Consensus size: 122
69172817 TTTAGCGACG
* * * *
69172827 TTTTACCAAAAGCGCCGCTAATGTTCTAGTTTTTAGTGGTGTTTTACCGAAAGCGCCGCTAATGC
1 TTTTA-CAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGC
*
69172892 TCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTAGTGGCA-
65 TCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCAGCTAATGCTCTGGTTTTAGTGGCAT
* * *
69172949 TTTTACAGAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACTGAAAGCGCTGTTAATGC
1 TTTTACA-AAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGC
* *
69173014 TCTGGTTTTTAGCTGCGTTTTACCGAAAGCGCAGCTAATGCTCTGTTTTTAGTGGCATT
65 TCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCAGCTAATGCTCTGGTTTTAGTGGCA-T
*
69173073 TTTTACTAAAA-CGCCGCTATTGCTCTGTGTTTT
1 TTTTAC-AAAAGCGCCGCTAATGCTCTG-GTTTT
69173106 ACAATTTTTG
Statistics
Matches: 141, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
121 2 0.01
122 109 0.77
123 15 0.11
124 14 0.10
125 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.37
Consensus pattern (122 bp):
TTTTACAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCT
CTGGTTTTTAGCGGCGTTTTACCGAAAGCGCAGCTAATGCTCTGGTTTTAGTGGCAT
Found at i:69185454 original size:40 final size:40
Alignment explanation
Indices: 69185406--69185590 Score: 246
Period size: 40 Copynumber: 4.6 Consensus size: 40
69185396 CTTGCACAAG
*
69185406 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
69185446 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
69185486 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
69185526 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
69185567 GCCTTCGGGACTTAGCCCTGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
69185591 CATTCGAATA
Statistics
Matches: 124, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 95 0.77
41 28 0.23
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:69187832 original size:33 final size:33
Alignment explanation
Indices: 69187795--69187862 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
69187785 GCCAAGGAAA
69187795 CTTACCCAAATTGGCCATGAAAGTTTCTTCTCT
1 CTTACCCAAATTGGCCATGAAAGTTTCTTCTCT
** *
69187828 CTTACCCAGTTTGGCCATGAAAGTTTTTTCTCT
1 CTTACCCAAATTGGCCATGAAAGTTTCTTCTCT
69187861 CT
1 CT
69187863 CTCTAAGGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.40
Consensus pattern (33 bp):
CTTACCCAAATTGGCCATGAAAGTTTCTTCTCT
Found at i:69189339 original size:7 final size:7
Alignment explanation
Indices: 69189312--69189355 Score: 63
Period size: 7 Copynumber: 6.1 Consensus size: 7
69189302 CTGTTTTGAT
69189312 AACCCTAA
1 AACCCT-A
69189320 AACCCTAA
1 AACCCT-A
69189328 AACCCTA
1 AACCCTA
69189335 AACCCTA
1 AACCCTA
69189342 AA-CCTA
1 AACCCTA
69189348 AACCCTA
1 AACCCTA
69189355 A
1 A
69189356 TAGACTCAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.17
7 15 0.43
8 14 0.40
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.14
Consensus pattern (7 bp):
AACCCTA
Found at i:69189349 original size:13 final size:14
Alignment explanation
Indices: 69189312--69189355 Score: 63
Period size: 13 Copynumber: 3.1 Consensus size: 14
69189302 CTGTTTTGAT
69189312 AACCCTAAAACCCTAA
1 AACCCT-AAACCCT-A
69189328 AACCCTAAACCCTA
1 AACCCTAAACCCTA
69189342 AA-CCTAAACCCTA
1 AACCCTAAACCCTA
69189355 A
1 A
69189356 TAGACTCAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 12 0.43
14 3 0.11
15 7 0.25
16 6 0.21
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.14
Consensus pattern (14 bp):
AACCCTAAACCCTA
Found at i:69190169 original size:20 final size:20
Alignment explanation
Indices: 69190141--69190178 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
69190131 ATAAGAAAGG
*
69190141 AAAATAAAGTAAAT-AAATGA
1 AAAAAAAAG-AAATCAAATGA
69190161 AAAAAAAAGAAATCAAAT
1 AAAAAAAAGAAATCAAAT
69190179 AATTGAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (20 bp):
AAAAAAAAGAAATCAAATGA
Found at i:69190993 original size:12 final size:11
Alignment explanation
Indices: 69190961--69190994 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
69190951 GTATGCTCAG
69190961 CTTCAGGGTAT
1 CTTCAGGGTAT
*
69190972 CTTTAGGGTAT
1 CTTCAGGGTAT
69190983 CTTCAAGGGTAT
1 CTTC-AGGGTAT
69190995 GTCGCAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 13 0.65
12 7 0.35
ACGTcount: A:0.21, C:0.15, G:0.26, T:0.38
Consensus pattern (11 bp):
CTTCAGGGTAT
Found at i:69195086 original size:27 final size:28
Alignment explanation
Indices: 69195030--69195099 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
69195020 AAATTTGTAC
69195030 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
69195058 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
69195085 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
69195100 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:69197894 original size:46 final size:46
Alignment explanation
Indices: 69197826--69197995 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 46
69197816 TGTAACCCGC
* * *
69197826 CCATAAGTGAACTCAGATTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
69197872 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * **
69197918 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
*
69197965 CCATAAGTGAACTCGGACTGAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
69197996 TTTGGATGCC
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 65 0.65
47 35 0.35
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:69197962 original size:93 final size:93
Alignment explanation
Indices: 69197834--69198005 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
69197824 GCCCATAAGT
* ***
69197834 GAACTCAGATTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69197899 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
69197927 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTGAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
69197992 CGAGTTTGGATGCC
66 CGAGCTCGGATGCC
69198006 CAAATATCCT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:69200414 original size:29 final size:28
Alignment explanation
Indices: 69200380--69200482 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
69200370 TACTCAATCA
*
69200380 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
69200409 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
69200438 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
69200467 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
69200483 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:69203508 original size:39 final size:39
Alignment explanation
Indices: 69203454--69203694 Score: 383
Period size: 39 Copynumber: 6.2 Consensus size: 39
69203444 TGTGTATGAA
*
69203454 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
69203493 TGTGCGAGTTGTGATATCCGGGCTAAGCCCAAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
69203532 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
69203571 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
69203610 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
69203649 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
69203689 TGTGCG
1 TGTGCG
69203695 GGTTACCATA
Statistics
Matches: 184, Mismatches: 17, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
39 167 0.91
40 17 0.09
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:69210237 original size:40 final size:40
Alignment explanation
Indices: 69210191--69210374 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
69210181 CTCTCACAAG
*
69210191 GCCTTCGGGTCTTAGCCCGGATAT-GATCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAG-TCACTAGCACAAAT
* *
69210231 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * * *
69210271 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
69210311 GCCTTCGGATCTTAGTCCGGATATAGTCACTTAACACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCACAAAT
*
69210352 GCCTTC-GGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
69210375 CATTCGAATA
Statistics
Matches: 120, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
40 107 0.89
41 13 0.11
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:69210289 original size:80 final size:81
Alignment explanation
Indices: 69210191--69210374 Score: 241
Period size: 80 Copynumber: 2.3 Consensus size: 81
69210181 CTCTCACAAG
*
69210191 GCCTTCGGGTCTTAGCCCGGATAT-GATCACTAGCATAAATGCCTTCGGGA-CTTAGCCCGGATA
1 GCCTTCGGGTCTTAGCCCGGATATAG-TAACTAGCATAAATGCCTTC-GGATCTTAGCCCGGATA
* * *
69210254 TAGTCGC-TAGCACAAAT
64 TAGTCACTTAACACAAAA
* * * *
69210271 GCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGTCCGGATATA
1 GCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCATAAATGCCTTCGGATCTTAGCCCGGATATA
69210336 GTCACTTAACACAAAA
66 GTCACTTAACACAAAA
*
69210352 GCCTTC-GGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
69210375 CATTCGAATA
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
79 3 0.03
80 72 0.80
81 15 0.17
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (81 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTAACTAGCATAAATGCCTTCGGATCTTAGCCCGGATATA
GTCACTTAACACAAAA
Found at i:69216156 original size:40 final size:40
Alignment explanation
Indices: 69216107--69216257 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
69216097 ATCACGATTT
*
69216107 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
69216147 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATTACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
69216187 GCATAAATGTCC-TCGGGACTTAGCCCGGAT-GTA-GCCACTA
1 GCACAAATG-CCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* *
69216227 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
69216258 TAATTTCCAG
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 3 0.03
40 87 0.95
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:69216195 original size:80 final size:80
Alignment explanation
Indices: 69216111--69216297 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
69216101 CGATTTGCAC
* * *
69216111 AAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTCGCACGAA-TGCCTTCGGGTCTTAGCCCG
1 AAATGCCTTCGGGACTTAGCCCGGATAGAA-GCACTAGCAC-AATTGCCTTCGGGTCTTAACCCG
*
69216174 GATATAATTACTAGCAT
64 GATATAATTACCAGCAT
*
69216191 AAATGTCC-TCGGGACTTAGCCCGGAT-GTAGCCACTAGCACAATTGCCTTCGGGTCTTAACCCG
1 AAATG-CCTTCGGGACTTAGCCCGGATAGAAG-CACTAGCACAATTGCCTTCGGGTCTTAACCCG
*
69216254 GATATAATTTCCAGCAT
64 GATATAATTACCAGCAT
* * *
69216271 TAACGTCTTCGGGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
69216298 TCATTCAATT
Statistics
Matches: 92, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
78 1 0.01
79 5 0.05
80 84 0.91
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
AAATGCCTTCGGGACTTAGCCCGGATAGAAGCACTAGCACAATTGCCTTCGGGTCTTAACCCGGA
TATAATTACCAGCAT
Found at i:69221705 original size:40 final size:40
Alignment explanation
Indices: 69221655--69221840 Score: 193
Period size: 38 Copynumber: 4.7 Consensus size: 40
69221645 TAACCACTCG
*
69221655 CAAAGGCCTTCGGGTCTTAGCCCGGATAT-GATCACTAGCA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAG-TCACTAGCA
* * *
69221695 TAAATGCCTTC-GGACTTAGCCC-GATATAGTCGCTAGCA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA
* * * *
69221733 CAAATGCCTTCGGGTTTTGGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA
* * * *
69221773 -TAATGCCTTC-GATCTTAGTCCGGATATAGTCACTTAACA
1 CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCA
* *
69221812 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGTCTTAGCCCGGATAT
69221841 CATTCGAATA
Statistics
Matches: 116, Mismatches: 24, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
38 41 0.35
39 31 0.27
40 30 0.26
41 14 0.12
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA
Found at i:69221799 original size:78 final size:79
Alignment explanation
Indices: 69221655--69221840 Score: 227
Period size: 78 Copynumber: 2.4 Consensus size: 79
69221645 TAACCACTCG
* *
69221655 CAAAGGCCTTCGGGTCTTAGCCCGGATATGATCACTAGCATAAATGCCTTCGGACTTAGCCCGAT
1 CAAAAGCCTTCGGGTCTTAGCCCGGATATGATAACTAGCATAAATGCCTTCGGACTTAGCCCGAT
* *
69221720 ATAGTCGC-TAGCA
66 ATAGTCACTTAACA
* * * * *
69221733 CAAATGCCTTCGGGTTTTGGCCCGGATAT-AGTAACTCGCAT-AATGCCTTC-GATCTTAGTCCG
1 CAAAAGCCTTCGGGTCTTAGCCCGGATATGA-TAACTAGCATAAATGCCTTCGGA-CTTAG-CCC
69221795 GATATAGTCACTTAACA
63 GATATAGTCACTTAACA
*
69221812 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAAAGCCTTCGGGTCTTAGCCCGGATAT
69221841 CATTCGAATA
Statistics
Matches: 92, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
76 2 0.02
77 15 0.16
78 46 0.50
79 29 0.32
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAAAGCCTTCGGGTCTTAGCCCGGATATGATAACTAGCATAAATGCCTTCGGACTTAGCCCGAT
ATAGTCACTTAACA
Found at i:69225009 original size:24 final size:24
Alignment explanation
Indices: 69224982--69225028 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
69224972 AAATATTTCT
**
69224982 CCCAACTGCCTTTGAATTCTAATA
1 CCCAACTGCCTTCAAATTCTAATA
69225006 CCCAACTGCCTTCAAATTCTAAT
1 CCCAACTGCCTTCAAATTCTAAT
69225029 CACTGTACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.32, G:0.06, T:0.32
Consensus pattern (24 bp):
CCCAACTGCCTTCAAATTCTAATA
Found at i:69227524 original size:27 final size:28
Alignment explanation
Indices: 69227492--69227787 Score: 324
Period size: 27 Copynumber: 10.9 Consensus size: 28
69227482 AAGTACTCTC
69227492 GATTTACAGAATTACCGTTTTACCCTCA
1 GATTTACAGAATTACCGTTTTACCCTCA
* *
69227520 G-TTTATAGAATTACTGTTTTACCCTC-
1 GATTTACAGAATTACCGTTTTACCCTCA
* *
69227546 GATTTATAGAATTACCATTTTACCCTC-
1 GATTTACAGAATTACCGTTTTACCCTCA
** * *
69227573 GATTTGTAAAATTACCGTTTTACCCT-T
1 GATTTACAGAATTACCGTTTTACCCTCA
* *
69227600 GATTTACAGAATTACTGGTTTACCCTCA
1 GATTTACAGAATTACCGTTTTACCCTCA
* *
69227628 G-TTTACAAAATTATCGTTTTACCCTC-
1 GATTTACAGAATTACCGTTTTACCCTCA
*
69227654 GATTTACAGAATTACCGTTTTACCCTTA
1 GATTTACAGAATTACCGTTTTACCCTCA
* * *
69227682 -ATTTATAAAATTACCGTTTTACCCT-T
1 GATTTACAGAATTACCGTTTTACCCTCA
* *
69227708 GATTTACAGAATTACTGGTTTACCCTCA
1 GATTTACAGAATTACCGTTTTACCCTCA
* * * *
69227736 G-TTTATAAAATTATCATTTTACCCTC-
1 GATTTACAGAATTACCGTTTTACCCTCA
69227762 GATTTACAGAATTACCGTTTTACCCT
1 GATTTACAGAATTACCGTTTTACCCT
69227788 TAATTGTGAA
Statistics
Matches: 222, Mismatches: 38, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.01
27 216 0.97
28 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (28 bp):
GATTTACAGAATTACCGTTTTACCCTCA
Found at i:69227532 original size:54 final size:54
Alignment explanation
Indices: 69227489--69227787 Score: 429
Period size: 54 Copynumber: 5.5 Consensus size: 54
69227479 CCAAAGTACT
* *
69227489 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAAAATTACCGTTTTACC
* * *
69227543 CTCGATTTATAGAATTACCATTTTACCCTC-GATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAG-TTTATAAAATTACCGTTTTACC
* * * * *
69227597 CTTGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAAAATTACCGTTTTACC
* *
69227651 CTCGATTTACAGAATTACCGTTTTACCCTTAATTTATAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAAAATTACCGTTTTACC
* * * * *
69227705 CTTGATTTACAGAATTACTGGTTTACCCTCAGTTTATAAAATTATCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAAAATTACCGTTTTACC
69227759 CTCGATTTACAGAATTACCGTTTTACCCT
1 CTCGATTTACAGAATTACCGTTTTACCCT
69227788 TAATTGTGAA
Statistics
Matches: 213, Mismatches: 30, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 1 0.00
54 211 0.99
55 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (54 bp):
CTCGATTTACAGAATTACCGTTTTACCCTCAGTTTATAAAATTACCGTTTTACC
Found at i:69227788 original size:108 final size:108
Alignment explanation
Indices: 69227492--69227792 Score: 496
Period size: 108 Copynumber: 2.8 Consensus size: 108
69227482 AAGTACTCTC
* * * *
69227492 GATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTA-CTGTTTTACCCTCGATTTATAGA
1 GATTTACAGAATTACTGGTTTACCCTCAGTTTATAAAATTATC-GTTTTACCCTCGATTTACAGA
* ** *
69227556 ATTACCATTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTT
65 ATTACCGTTTTACCCTTAATTTATAAAATTACCGTTTTACCCTT
*
69227600 GATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTTTTACCCTCGATTTACAGAA
1 GATTTACAGAATTACTGGTTTACCCTCAGTTTATAAAATTATCGTTTTACCCTCGATTTACAGAA
69227665 TTACCGTTTTACCCTTAATTTATAAAATTACCGTTTTACCCTT
66 TTACCGTTTTACCCTTAATTTATAAAATTACCGTTTTACCCTT
*
69227708 GATTTACAGAATTACTGGTTTACCCTCAGTTTATAAAATTATCATTTTACCCTCGATTTACAGAA
1 GATTTACAGAATTACTGGTTTACCCTCAGTTTATAAAATTATCGTTTTACCCTCGATTTACAGAA
69227773 TTACCGTTTTACCCTTAATT
66 TTACCGTTTTACCCTTAATT
69227793 GTGAAATTAC
Statistics
Matches: 181, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
108 180 0.99
109 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (108 bp):
GATTTACAGAATTACTGGTTTACCCTCAGTTTATAAAATTATCGTTTTACCCTCGATTTACAGAA
TTACCGTTTTACCCTTAATTTATAAAATTACCGTTTTACCCTT
Found at i:69227835 original size:27 final size:26
Alignment explanation
Indices: 69227797--69227911 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
69227787 TTAATTGTGA
*
69227797 AATTACTGAAATACACCTGTAGGGTAG
1 AATTACCGAAATAC-CCTGTAGGGTAG
* *
69227824 AATTATCGAAATACCCTTGTAGGGTTG
1 AATTACCGAAATACCC-TGTAGGGTAG
*
69227851 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATA-CCCTGTAGGGTAG
* * * *
69227878 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCC-TGTAGGGTAG
69227905 AATTACC
1 AATTACC
69227912 ATTTTGCCCC
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 5 0.07
27 65 0.89
28 3 0.04
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (26 bp):
AATTACCGAAATACCCTGTAGGGTAG
Found at i:69227872 original size:54 final size:55
Alignment explanation
Indices: 69227794--69227911 Score: 161
Period size: 54 Copynumber: 2.2 Consensus size: 55
69227784 CCCTTAATTG
*
69227794 TGAAATTACTGAAATACACCTGTAGGGTAGAATTA-TCGAAATACCCTTGTAGGGT
1 TGAAATTACCGAAATACACCTGTAGGGTAGAATTACT-GAAATACCCTTGTAGGGT
* * *
69227849 TGAAA-TACCGAAATACCCCTGTAGGGTAGAATTACTGAGATACCCTTGT-GGGG
1 TGAAATTACCGAAATACACCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGT
*
69227902 TAAAATTACC
1 TGAAATTACC
69227912 ATTTTGCCCC
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
53 7 0.12
54 43 0.77
55 6 0.11
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (55 bp):
TGAAATTACCGAAATACACCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGT
Found at i:69228148 original size:27 final size:26
Alignment explanation
Indices: 69228110--69228190 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
69228100 CGGAGGAAGC
69228110 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
69228137 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
69228163 GTATTTGGTGAC--TGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
69228188 GTT
1 GTT
69228191 GACCAATCGA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
24 1 0.02
25 14 0.29
26 9 0.18
27 25 0.51
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:69228310 original size:22 final size:22
Alignment explanation
Indices: 69228278--69228336 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
69228268 CCCGTTATTA
*
69228278 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
69228300 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
69228322 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
69228337 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:69228523 original size:27 final size:27
Alignment explanation
Indices: 69228501--69228574 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
69228491 TAGGTGGGTT
*
69228501 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
69228528 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
69228555 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
69228575 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:69228701 original size:6 final size:6
Alignment explanation
Indices: 69228692--69228842 Score: 107
Period size: 6 Copynumber: 24.8 Consensus size: 6
69228682 TTGCATTCAC
* * * *
69228692 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTTTA
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
69228741 ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG -TCACTTA ATTCTG ATTCTA
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG
* *
69228790 ATTCTG ATTTTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
69228838 ATTCT
1 ATTCT
69228843 TATTTTGGTT
Statistics
Matches: 113, Mismatches: 18, Indels: 28
0.71 0.11 0.18
Matches are distributed among these distances:
5 9 0.08
6 92 0.81
7 9 0.08
8 3 0.03
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:69228787 original size:61 final size:61
Alignment explanation
Indices: 69228692--69228832 Score: 212
Period size: 61 Copynumber: 2.3 Consensus size: 61
69228682 TTGCATTCAC
* **
69228692 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTTTAATT-CTGTTACTG
1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTAATTCTGATTTT-ATTACTAATACTG
* * *
69228753 ATTCTGATTCTGATTCTGTCACTTAATTCTGATTCTAATTCTGATTTTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTAATTCTGATTTTATTACTAATACTG
69228814 ATTCTGATTCTGATTCTGT
1 ATTCTGATTCTGATTCTGT
69228833 TACTGATTCT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
60 2 0.03
61 71 0.97
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (61 bp):
ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTAATTCTGATTTTATTACTAATACTG
Found at i:69230314 original size:125 final size:125
Alignment explanation
Indices: 69230092--69230325 Score: 432
Period size: 125 Copynumber: 1.9 Consensus size: 125
69230082 ACATCACATC
* *
69230092 TTTCTCAGTGGTTTCCAGTCAACAACTGTTGAAATTTTACTTGGATCAACTCTGATACTATCAGC
1 TTTCTCAGTGGTTTCCAGTCAAAAACTGTTGAAATTTTACTTGGATCAACTCTGATACCATCAGC
69230157 CGATACTATATGTCCCAGAAAACCAACTTCTCAAAGCCAAAACTTCTAACTTTAAATACA
66 CGATACTATATGTCCCAGAAAACCAACTTCTCAAAGCCAAAACTTCTAACTTTAAATACA
*
69230217 TTTCTCAGTGGTTTCCAGTCAAAAACTGTTGAAATTTTACTTGGATCAACTCTGATGCCATCAGC
1 TTTCTCAGTGGTTTCCAGTCAAAAACTGTTGAAATTTTACTTGGATCAACTCTGATACCATCAGC
*
69230282 CGATACTATATGTCCCAGAAAACCAACTTCTCAGAGCCAAAACT
66 CGATACTATATGTCCCAGAAAACCAACTTCTCAAAGCCAAAACT
69230326 CACATTTGCT
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
125 105 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.30
Consensus pattern (125 bp):
TTTCTCAGTGGTTTCCAGTCAAAAACTGTTGAAATTTTACTTGGATCAACTCTGATACCATCAGC
CGATACTATATGTCCCAGAAAACCAACTTCTCAAAGCCAAAACTTCTAACTTTAAATACA
Found at i:69233760 original size:27 final size:27
Alignment explanation
Indices: 69233701--69233778 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
69233691 CCAATATCGA
* * *
69233701 AGCAAAGCTGCCAGCAATAAT-AATGT
1 AGCATAGCTGCCAGAAATAGTAAATGT
69233727 AGCATAGCTGCCAGAAATAGTAAATGT
1 AGCATAGCTGCCAGAAATAGTAAATGT
*
69233754 AGCATAGCTGCCAGAAACAGTAAAT
1 AGCATAGCTGCCAGAAATAGTAAAT
69233779 ATGGCAAAGC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 18 0.38
27 29 0.62
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.19
Consensus pattern (27 bp):
AGCATAGCTGCCAGAAATAGTAAATGT
Found at i:69233794 original size:27 final size:27
Alignment explanation
Indices: 69233737--69233794 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
69233727 AGCATAGCTG
* * * **
69233737 CCAGAAATAGTAAATGTAGCATAGCTG
1 CCAGAAACAGTAAATATAGCAAAGCCA
*
69233764 CCAGAAACAGTAAATATGGCAAAGCCA
1 CCAGAAACAGTAAATATAGCAAAGCCA
69233791 CCAG
1 CCAG
69233795 TAATAGTGAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.16
Consensus pattern (27 bp):
CCAGAAACAGTAAATATAGCAAAGCCA
Found at i:69234007 original size:27 final size:27
Alignment explanation
Indices: 69233977--69234057 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
69233967 CATTTTGCTA
* * *
69233977 TACAGAGGTATCACGGTCATTTTACCC
1 TACAGGGGTATTATGGTCATTTTACCC
*
69234004 TACAGGGGCATTATGGTCATTTTACCC
1 TACAGGGGTATTATGGTCATTTTACCC
* *
69234031 TATAGGGGTATTATGGTTATTTTACCC
1 TACAGGGGTATTATGGTCATTTTACCC
69234058 ATTTTGGGGT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (27 bp):
TACAGGGGTATTATGGTCATTTTACCC
Found at i:69248515 original size:12 final size:12
Alignment explanation
Indices: 69248498--69248523 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69248488 GGCAAGTTGA
69248498 GTTTCTGAAAGT
1 GTTTCTGAAAGT
69248510 GTTTCTGAAAGT
1 GTTTCTGAAAGT
69248522 GT
1 GT
69248524 CTCATTGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.27, T:0.42
Consensus pattern (12 bp):
GTTTCTGAAAGT
Found at i:69249911 original size:46 final size:46
Alignment explanation
Indices: 69249858--69250033 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
69249848 GGATTTGGCA
69249858 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69249904 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
69249949 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
69249997 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69250034 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69249963 original size:93 final size:93
Alignment explanation
Indices: 69249854--69250025 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69249844 ACTAGGATTT
* *
69249854 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69249919 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
69249947 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69250012 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
69250026 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:69252970 original size:15 final size:15
Alignment explanation
Indices: 69252950--69253018 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
69252940 GTATCTTGGG
69252950 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
69252965 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
69252980 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
69252995 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
69253010 TTTCTTTAT
1 TTTCTTTAT
69253019 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:69253019 original size:30 final size:30
Alignment explanation
Indices: 69252941--69253028 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
69252931 CATAGTATCG
* * * *
69252941 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
69252971 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
69253001 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
69253029 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:69255460 original size:46 final size:45
Alignment explanation
Indices: 69255410--69255585 Score: 221
Period size: 46 Copynumber: 3.8 Consensus size: 45
69255400 ATGGTTGGCA
69255410 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
69255456 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
69255503 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
69255549 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69255586 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.61
47 33 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:69255565 original size:93 final size:93
Alignment explanation
Indices: 69255406--69255577 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69255396 TAGGATGGTT
* *
69255406 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69255471 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
69255499 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69255564 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
69255578 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:69260270 original size:27 final size:27
Alignment explanation
Indices: 69260232--69260285 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
69260222 TGGAAATGAG
69260232 ATAGAGTTACTATGGATTT-GATATCAT
1 ATAGAGTTACTATGGATTTCG-TATCAT
69260259 ATAGAGTTACTATGGATTTCGTATCAT
1 ATAGAGTTACTATGGATTTCGTATCAT
69260286 GTTTACCCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
ATAGAGTTACTATGGATTTCGTATCAT
Found at i:69261924 original size:40 final size:40
Alignment explanation
Indices: 69261876--69262047 Score: 256
Period size: 40 Copynumber: 4.3 Consensus size: 40
69261866 TCTTTGGGAT
* * * *
69261876 TTAG-CCGGATATAACCACACGCCCAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
69261915 TTAACCCGGACATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
69261955 TTAGCCCGGATATAACAACTCGCACAAATGTCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
69261995 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCTGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
69262035 TTAGCCCGGATAT
1 TTAGCCCGGATAT
69262048 CATTCAAATG
Statistics
Matches: 119, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 3 0.03
40 116 0.97
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:69268352 original size:40 final size:40
Alignment explanation
Indices: 69268280--69268360 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
69268270 AGAATTGAGA
* * * *
69268280 GTTATATCCTGGCTAAGTCCCGAAGAGTATTCGTGCTGGT
1 GTTAGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCCGGT
* *
69268320 GTTAGATCCGGGCTAAGTCCTGAAGGGCATTCGTGCCGGT
1 GTTAGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCCGGT
69268360 G
1 G
69268361 ATGTGTAATC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.19, C:0.21, G:0.32, T:0.28
Consensus pattern (40 bp):
GTTAGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCCGGT
Found at i:69273895 original size:27 final size:27
Alignment explanation
Indices: 69273865--69273994 Score: 161
Period size: 27 Copynumber: 4.8 Consensus size: 27
69273855 ATTACCAAAG
*
69273865 TACCATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
69273892 TACCCTCGATTTACATAATTGCCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
69273919 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
69273946 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
69273973 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
69273995 TAAAATACCC
Statistics
Matches: 88, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:69274003 original size:27 final size:27
Alignment explanation
Indices: 69273973--69274302 Score: 188
Period size: 27 Copynumber: 12.2 Consensus size: 27
69273963 ATTACTGTTT
* * *
69273973 TACCCTCAATTTACAAAATTACTAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
69274000 TACCCTTAGTTTACAAAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
69274027 TACCCTC-GATCAGTAAAATTACCAAAA
1 TACCCTCAGTTTA-TAAAATTACCAAAA
* * * *
69274054 TACCCT-AGTCTGTAAAATTGCTAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
69274080 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-AGTTTATAAAATTACCAAAA
*
69274107 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AGTTTATAAAATTACCAAAA
* * * * *
69274134 TACTGCT-GGTTTGTGAAATTACCGAAA
1 TAC-CCTCAGTTTATAAAATTACCAAAA
* *
69274161 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
* *
69274188 TACCC-CTGATTTACAAAATTA-CAGAAA
1 TACCCTCAG-TTTATAAAATTACCA-AAA
* * * **
69274215 TACCCTTACTTTCTAAAAATTATAAAAA
1 TACCCTCAGTTTAT-AAAATTACCAAAA
* ** * **
69274243 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
** * * *
69274270 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCAGTTTATAAAATTACCAAAA
*
69274297 CACCCT
1 TACCCT
69274303 TGTAGGGTGA
Statistics
Matches: 238, Mismatches: 53, Indels: 24
0.76 0.17 0.08
Matches are distributed among these distances:
26 25 0.11
27 192 0.81
28 20 0.08
29 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCAGTTTATAAAATTACCAAAA
Found at i:69274020 original size:81 final size:81
Alignment explanation
Indices: 69273872--69274021 Score: 185
Period size: 81 Copynumber: 1.9 Consensus size: 81
69273862 AAGTACCATC
* * * *** * * *
69273872 GATTTATAGAATTACCGTTTTACCCTCGATTTACATAATTGCCATTTTACCCTCGATTTATAGAA
1 GATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTAGATTTACAAAA
69273937 TTACTGTTTTACCCTT
66 TTACTGTTTTACCCTT
* *
69273953 GATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACTAAAATACCCTTAG-TTTACAAA
1 GATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCC-TAGATTTACAAA
69274017 ATTAC
65 ATTAC
69274022 CAAAATACCC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
81 55 0.96
82 2 0.04
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.41
Consensus pattern (81 bp):
GATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAAAATACCCTAGATTTACAAAA
TTACTGTTTTACCCTT
Found at i:69274031 original size:54 final size:54
Alignment explanation
Indices: 69273973--69274302 Score: 258
Period size: 54 Copynumber: 6.1 Consensus size: 54
69273963 ATTACTGTTT
* * **
69273973 TACCCTCAATTTACAAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * * *
69274027 TACCCTCGA-TCAGTAAAATTACCAAAATACCC-TAGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* ** *
69274080 TACCC-CTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * *** * * *
69274134 TACTGCT-GGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TAC-CCTCGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * **
69274188 TACCC-CTGATTTACAAAATTA-CAGAAATACCCTTACTTTCTAAAAATTATAAAAA
1 TACCCTC-GATTTACAAAATTACCA-AAATACCCTTAGTTTGT-AAAATTACCAAAA
* * * ** * * *
69274243 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
*
69274297 CACCCT
1 TACCCT
69274303 TGTAGGGTGA
Statistics
Matches: 218, Mismatches: 46, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
52 1 0.00
53 45 0.21
54 129 0.59
55 43 0.20
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:69274031 original size:81 final size:81
Alignment explanation
Indices: 69273852--69274036 Score: 183
Period size: 81 Copynumber: 2.3 Consensus size: 81
69273842 CTCAACTTGT
* * * * * *
69273852 AAAATTACCAAAGTACCATCGATTTATAGAATTACCGTTTTACCCTCGATTTACATAATTGCCAT
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAA
** * *
69273917 TTTACCCTCGATTTAT
66 AATACCCTAGATTTAC
* ***** * * *
69273933 AGAATTACTGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTCAATTTACAAAATTACTAA
1 AAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAA
69273998 AATACCCTTAG-TTTAC
66 AATACCC-TAGATTTAC
69274014 AAAATTACCAAAATACCCTCGAT
1 AAAATTACCAAAATACCCTCGAT
69274037 CAGTAAAATT
Statistics
Matches: 78, Mismatches: 25, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
81 76 0.97
82 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.37
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTATAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAA
AATACCCTAGATTTAC
Found at i:69274100 original size:80 final size:81
Alignment explanation
Indices: 69273987--69274193 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 81
69273977 CTCAATTTAC
* **
69273987 AAAATTACTAAAATACCCTTAGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACCA
69274051 AAATAC-CCTAGTCTGT
65 AAATACTCCTAGTCTGT
* * * **
69274067 AAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
* * *
69274132 AATACTGCTGGTTTGT
66 AATACTCCTAGTCTGT
* ** *
69274148 GAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCC
1 AAAATTACTAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCC
69274194 TGATTTACAA
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 2 0.02
80 63 0.59
81 42 0.39
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACTCCTAGTCTGT
Found at i:69275290 original size:24 final size:25
Alignment explanation
Indices: 69275208--69275301 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
69275198 AAGAAGTGTT
* *
69275208 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
69275233 AAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
69275258 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCA
69275282 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69275302 AATAAAAGAG
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
24 20 0.30
25 46 0.70
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:69275314 original size:24 final size:25
Alignment explanation
Indices: 69275207--69275314 Score: 127
Period size: 25 Copynumber: 4.4 Consensus size: 25
69275197 GAAGAAGTGT
* *
69275207 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTACA
*
69275232 GAAAAGGGCTTTGCCCCAGTTTACCA
1 TAAAAGGGCTTTGCCCCAGTTTA-CA
69275258 -AAAAGGGCTTTGCCCCAGTTT--A
1 TAAAAGGGCTTTGCCCCAGTTTACA
69275280 TCAAAAGGGCTTTGCCCCAG-TTA-A
1 T-AAAAGGGCTTTGCCCCAGTTTACA
69275304 TAAAAGAGGCT
1 TAAAAG-GGCT
69275315 AGGCCTCCAG
Statistics
Matches: 75, Mismatches: 3, Indels: 11
0.84 0.03 0.12
Matches are distributed among these distances:
22 1 0.01
23 7 0.09
24 24 0.32
25 42 0.56
26 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (25 bp):
TAAAAGGGCTTTGCCCCAGTTTACA
Found at i:69275555 original size:31 final size:31
Alignment explanation
Indices: 69275520--69275660 Score: 246
Period size: 31 Copynumber: 4.5 Consensus size: 31
69275510 CGTTTACAGT
*
69275520 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
69275551 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
69275582 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
69275613 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
69275644 AAAGGCTTCGACCCAGT
1 AAAGGCTTCGGCCCAGT
69275661 AACCGTTAAA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:69276932 original size:30 final size:30
Alignment explanation
Indices: 69276768--69276932 Score: 131
Period size: 30 Copynumber: 5.5 Consensus size: 30
69276758 ATGGTTGACA
* * *
69276768 CATCCCTTTTCTTA-ATTCGATAACCAAAGT
1 CATCCCTTTTCATAGATT-GATAGCCAAAGC
* *
69276798 TATCCCTTTTCATAG-TTCGACAGCCAAAGC
1 CATCCCTTTTCATAGATT-GATAGCCAAAGC
* *
69276828 TATCCCTTTTCATA-ATCTGATAGCCGAAA-A
1 CATCCCTTTTCATAGAT-TGATAGCC-AAAGC
* ** * * *
69276858 TATCTGTTTTCATAAATTGATAGCCTAAGT
1 CATCCCTTTTCATAGATTGATAGCCAAAGC
* *
69276888 CATTCCTTTTCATAGATTGATAGCCGAAGC
1 CATCCCTTTTCATAGATTGATAGCCAAAGC
69276918 CATCCCTTTTCATAG
1 CATCCCTTTTCATAG
69276933 TTCGGTGGTT
Statistics
Matches: 110, Mismatches: 19, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
29 2 0.02
30 102 0.93
31 6 0.05
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (30 bp):
CATCCCTTTTCATAGATTGATAGCCAAAGC
Found at i:69276951 original size:30 final size:30
Alignment explanation
Indices: 69276917--69276991 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
69276907 ATAGCCGAAG
* *
69276917 CCATCCCTTTTCATAGTTCGGTGGTTGTCA
1 CCATCCCTTTTCATAGTTCGATGGTCGTCA
* *
69276947 CCATCCTTTTTCATAGTTTGATGGTCGTCA
1 CCATCCCTTTTCATAGTTCGATGGTCGTCA
*
69276977 CCATCCCTTTACATA
1 CCATCCCTTTTCATA
69276992 ATCAATATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.17, C:0.28, G:0.15, T:0.40
Consensus pattern (30 bp):
CCATCCCTTTTCATAGTTCGATGGTCGTCA
Found at i:69278662 original size:25 final size:24
Alignment explanation
Indices: 69278634--69278726 Score: 89
Period size: 25 Copynumber: 3.8 Consensus size: 24
69278624 TCATTAGGGA
69278634 TTACCAATTCTCAGCTCATATAAGC
1 TTACCAATT-TCAGCTCATATAAGC
** * *
69278659 TTACTGATTGCAGCTCATGA-GAGC
1 TTACCAATTTCAGCTCAT-ATAAGC
* *
69278683 TTACCGATTCTCAGCTCGTATAAGC
1 TTACCAATT-TCAGCTCATATAAGC
69278708 TTACCAATTTACAGCTCAT
1 TTACCAATTT-CAGCTCAT
69278727 GAGAGCATAC
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
24 21 0.39
25 33 0.61
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (24 bp):
TTACCAATTTCAGCTCATATAAGC
Found at i:69278706 original size:49 final size:50
Alignment explanation
Indices: 69278634--69278742 Score: 148
Period size: 49 Copynumber: 2.2 Consensus size: 50
69278624 TCATTAGGGA
** *
69278634 TTACCAATTCTCAGCTCATATAAGCTTACTGA-TTGCAGCTCATGAGAGC
1 TTACCAATTCTCAGCTCATATAAGCTTACCAATTTACAGCTCATGAGAGC
* *
69278683 TTACCGATTCTCAGCTCGTATAAGCTTACCAATTTACAGCTCATGAGAGC
1 TTACCAATTCTCAGCTCATATAAGCTTACCAATTTACAGCTCATGAGAGC
* *
69278733 ATACCTATTC
1 TTACCAATTC
69278743 ATAGCTTGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
49 28 0.54
50 24 0.46
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (50 bp):
TTACCAATTCTCAGCTCATATAAGCTTACCAATTTACAGCTCATGAGAGC
Found at i:69278737 original size:25 final size:25
Alignment explanation
Indices: 69278634--69278742 Score: 84
Period size: 25 Copynumber: 4.4 Consensus size: 25
69278624 TCATTAGGGA
*
69278634 TTACCAATTCTCAGCTCAT-ATAAGC
1 TTACCAATTCTCAGCTCATGA-GAGC
** *
69278659 TTACTGATT-GCAGCTCATGAGAGC
1 TTACCAATTCTCAGCTCATGAGAGC
*
69278683 TTACCGATTCTCAGCTCGTAT-A-AGC
1 TTACCAATTCTCAGCTC--ATGAGAGC
69278708 TTACCAATT-TACAGCTCATGAGAGC
1 TTACCAATTCT-CAGCTCATGAGAGC
* *
69278733 ATACCTATTC
1 TTACCAATTC
69278743 ATAGCTTGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
23 2 0.03
24 21 0.31
25 41 0.61
26 1 0.01
27 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (25 bp):
TTACCAATTCTCAGCTCATGAGAGC
Found at i:69280829 original size:22 final size:23
Alignment explanation
Indices: 69280804--69280851 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
69280794 TTTAAACATT
*
69280804 CATAATTC-GTACAATCACATAA
1 CATAATTCAATACAATCACATAA
*
69280826 CAT-ATTCAATACAATCATATAA
1 CATAATTCAATACAATCACATAA
69280848 -ATAA
1 CATAA
69280852 ACACAATTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.50, C:0.19, G:0.02, T:0.29
Consensus pattern (23 bp):
CATAATTCAATACAATCACATAA
Found at i:69282369 original size:25 final size:24
Alignment explanation
Indices: 69282315--69282373 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 24
69282305 TTGGCTAATG
*
69282315 TTGGCCTATATGTTTTGTTGTAGTT
1 TTGGCC-ATATGATTTGTTGTAGTT
*
69282340 GTGGCCATATGATTTGACTTGT-GTT
1 TTGGCCATATGATTTG--TTGTAGTT
69282365 TTGG-CATAT
1 TTGGCCATAT
69282374 TTTGGTATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
24 14 0.48
25 11 0.38
26 4 0.14
ACGTcount: A:0.15, C:0.10, G:0.25, T:0.49
Consensus pattern (24 bp):
TTGGCCATATGATTTGTTGTAGTT
Found at i:69286731 original size:43 final size:43
Alignment explanation
Indices: 69286636--69286819 Score: 239
Period size: 43 Copynumber: 4.3 Consensus size: 43
69286626 TTTTTCGAAA
*
69286636 AAACGCCGCTAAGGACCATGACCTTTAGCGGCGCTTTTTTGC--
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTT-CAT
*
69286678 AAATGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTC-T
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAT
* * * *
69286720 CAAACGCCGCTAAAGACCATGACCTTTAGCGGTGGTTTTTCCGT
1 -AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAT
* * * *
69286764 AAACGCCGCTAAAGATCATAACCTTTAGCGGCACTTTTCTCAT
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAT
69286807 AAACGCCGCTAAA
1 AAACGCCGCTAAA
69286820 AATAATGATT
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
41 1 0.01
42 38 0.30
43 85 0.68
44 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCAT
Found at i:69291005 original size:14 final size:14
Alignment explanation
Indices: 69290986--69291036 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
69290976 TAGTTAAGTG
69290986 TTTTTATAAAATAT
1 TTTTTATAAAATAT
* *
69291000 TTTTTAT-TACTAT
1 TTTTTATAAAATAT
* **
69291013 TTTTTATAAATTGG
1 TTTTTATAAAATAT
69291027 TTTTTATAAA
1 TTTTTATAAA
69291037 TAAAAAAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
13 11 0.37
14 19 0.63
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (14 bp):
TTTTTATAAAATAT
Found at i:69293120 original size:28 final size:27
Alignment explanation
Indices: 69293079--69293136 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
69293069 TGTACTAGAG
* * *
69293079 TACCTCTATGTATGCAAAATTACCATTA
1 TACCCCTATATATGCAAAATGACC-TTA
69293107 TACCCCTATATATGCAAAATGACCTTA
1 TACCCCTATATATGCAAAATGACCTTA
69293134 TAC
1 TAC
69293137 TATACCCTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 6 0.22
28 21 0.78
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (27 bp):
TACCCCTATATATGCAAAATGACCTTA
Found at i:69293291 original size:27 final size:26
Alignment explanation
Indices: 69293260--69293335 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 26
69293250 CTGGTGGCTA
*
69293260 TGCCACAAATTATCTGTTCTGTGGCCC
1 TGCCACAAA-TATCTGTTCTGTGGCAC
**
69293287 TGCCACGTATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCT-GTGGCAC
69293314 TGCCACAAAATATCTGTATCTG
1 TGCCAC-AAATATCTGT-TCTG
69293336 GTGACTCTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 10 0.24
27 19 0.46
28 9 0.22
29 3 0.07
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (26 bp):
TGCCACAAATATCTGTTCTGTGGCAC
Found at i:69293349 original size:29 final size:28
Alignment explanation
Indices: 69293260--69293349 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
69293250 CTGGTGGCTA
* * *
69293260 TGCCACAAATTATCTGTTCT-GTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
69293287 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
69293314 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
69293343 TGTCACA
1 TGCCACA
69293350 TTTTTTATAT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
26 10 0.20
27 18 0.35
28 8 0.16
29 15 0.29
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:69293821 original size:19 final size:19
Alignment explanation
Indices: 69293797--69293835 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
69293787 TTTTAATTAT
* *
69293797 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
69293816 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
69293835 T
1 T
69293836 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:69294444 original size:11 final size:10
Alignment explanation
Indices: 69294416--69294449 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
69294406 AGCCTGTAAG
69294416 TATTCTGAAT
1 TATTCTGAAT
*
69294426 TTTTCTGAAT
1 TATTCTGAAT
69294436 ATATTCTGAAT
1 -TATTCTGAAT
69294447 TAT
1 TAT
69294450 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:69300952 original size:28 final size:27
Alignment explanation
Indices: 69300912--69300975 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 27
69300902 GATGTACTAG
*
69300912 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACC-TT
69300940 ATACCCCTATGTATGCAAAATGACCTT
1 ATACCCCTATGTATGCAAAATGACCTT
69300967 ATACCCCTA
1 ATACCCCTA
69300976 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 11 0.31
28 24 0.69
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (27 bp):
ATACCCCTATGTATGCAAAATGACCTT
Found at i:69301619 original size:19 final size:19
Alignment explanation
Indices: 69301595--69301633 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
69301585 TTTTAATTAT
* *
69301595 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
69301614 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
69301633 T
1 T
69301634 ATGTGAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:69302092 original size:42 final size:40
Alignment explanation
Indices: 69302019--69302099 Score: 144
Period size: 42 Copynumber: 2.0 Consensus size: 40
69302009 TTTGAACGCA
69302019 TCGATGTGGCGCACGGATCGGTCATAACGTCTAGGCCGGG
1 TCGATGTGGCGCACGGATCGGTCATAACGTCTAGGCCGGG
69302059 TCGATGTGGCGCACCGGATCCGGTCATAACGTCTAGGCCGG
1 TCGATGTGGCGCA-CGGAT-CGGTCATAACGTCTAGGCCGG
69302100 TTTGGTGTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 13 0.33
41 5 0.13
42 21 0.54
ACGTcount: A:0.17, C:0.27, G:0.36, T:0.20
Consensus pattern (40 bp):
TCGATGTGGCGCACGGATCGGTCATAACGTCTAGGCCGGG
Found at i:69302649 original size:23 final size:24
Alignment explanation
Indices: 69302612--69302659 Score: 89
Period size: 23 Copynumber: 2.0 Consensus size: 24
69302602 ACCAAATAAC
69302612 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
69302636 AATTAA-TTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
69302659 A
1 A
69302660 TAAATATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 18 0.75
24 6 0.25
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:69302662 original size:11 final size:12
Alignment explanation
Indices: 69302619--69302663 Score: 58
Period size: 11 Copynumber: 3.9 Consensus size: 12
69302609 AACAATTAAT
69302619 TTTTATATAAAC
1 TTTTATATAAAC
* *
69302631 TTTTAAATTAA-
1 TTTTATATAAAC
69302642 TTTTATATAAAC
1 TTTTATATAAAC
69302654 TTTTA-ATAAA
1 TTTTATATAAA
69302664 TATATGAGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
11 14 0.50
12 14 0.50
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (12 bp):
TTTTATATAAAC
Found at i:69303314 original size:41 final size:41
Alignment explanation
Indices: 69303269--69303445 Score: 284
Period size: 41 Copynumber: 4.3 Consensus size: 41
69303259 TTACATGACT
* *
69303269 TTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGGTC
*
69303310 TTTAGCGGCGTTTCACCAAAAGCGCAGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGGTC
*
69303351 TTTAGCGGCGTTTCACCAAAAGCGCAGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGGTC
* * *
69303392 TTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCT-GTT
1 TTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGGTC
69303432 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
69303446 CAAAAAACGC
Statistics
Matches: 129, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
40 16 0.12
41 113 0.88
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCAGCTAATGCTCTGGTC
Found at i:69303473 original size:40 final size:40
Alignment explanation
Indices: 69303268--69303485 Score: 163
Period size: 41 Copynumber: 5.4 Consensus size: 40
69303258 GTTACATGAC
* ** * *
69303268 TTTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACAAAAAACGCCACTAATGCTC-AGT
* * * * *
69303309 CTTTAGCGGCGTTTCACCAAAAGCG-CAGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACAAAAAACGCCA-CTAATGCTC-AGT
* * * * *
69303350 CTTTAGCGGCGTTTCACCAAAAGCG-CAGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACAAAAAACGCCA-CTAATGCTC-AGT
* * ** * *
69303391 CTTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTACAAAAAACGCCACTAATGCTCAGT
*
69303431 TTTTAGCGGCGTTTT-CAAAAAACGCCACTATTGGCTCAGT
1 TTTTAGCGGCGTTTTACAAAAAACGCCACTAAT-GCTCAGT
69303471 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
69303486 TGTCAAAACG
Statistics
Matches: 159, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 12 0.08
40 38 0.24
41 108 0.68
42 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACAAAAAACGCCACTAATGCTCAGT
Found at i:69316669 original size:40 final size:40
Alignment explanation
Indices: 69316585--69316671 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 40
69316575 GCTAGTGGAC
*
69316585 TATCCGGGCTAAGCCCGAAGGCATCGTGCGAGTCGTATGC
1 TATCCGGGCTAAGCCCGAAGGCATCGTGCGAGTCGTATGA
*
69316625 TATCCGGGCTAAGCCCGAAGGCAATTCGTGCGAGT-GTGT-A
1 TATCCGGGCTAAGCCCGAAGGC-A-TCGTGCGAGTCGTATGA
69316665 TATCCGG
1 TATCCGG
69316672 TTAGTCTCCG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
40 29 0.67
41 4 0.09
42 10 0.23
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGCCCGAAGGCATCGTGCGAGTCGTATGA
Found at i:69319367 original size:40 final size:39
Alignment explanation
Indices: 69319315--69319421 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 39
69319305 TATCACGATT
** *
69319315 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
69319355 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
69319395 GCACATTGCCTTCGGGTCTTAACCCGG
1 GCACAATGCCTTCGGGTCTTAGCCCGG
69319422 TTATAATTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 21 0.36
40 38 0.64
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:69319382 original size:79 final size:79
Alignment explanation
Indices: 69319275--69319421 Score: 181
Period size: 79 Copynumber: 1.9 Consensus size: 79
69319265 TATGGTAACC
* * *
69319275 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCAC-AATGCCTTCGGGTCTTAA
69319338 CCCGGATAGAATGACT
64 CCCGGATAGAATGACT
* * * * * *
69319354 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACATTGCCTTCGGGTCTTAACC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAACC
69319419 CGG
66 CGG
69319422 TTATAATTTC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
78 1 0.02
79 51 0.89
80 5 0.09
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (79 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAACC
CGGATAGAATGACT
Found at i:69319421 original size:39 final size:40
Alignment explanation
Indices: 69319284--69319427 Score: 139
Period size: 39 Copynumber: 3.6 Consensus size: 40
69319274 CCGCACCAAG
* * * * * * *
69319284 GCCTACGGGACTTAACCCGGATATCACGA-TTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* ** *
69319323 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
69319363 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCAC-ATT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
69319402 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
69319428 TTTCCAGCAT
Statistics
Matches: 87, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 48 0.55
40 39 0.45
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
Found at i:69327456 original size:39 final size:40
Alignment explanation
Indices: 69327394--69327497 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 40
69327384 CCGCACCAAG
* * * *
69327394 GCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-AGCCACTAGCACAAAT
* * *
69327433 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACCATT
1 GCCTTCGGGTCTTAACCCGGATATAGCCACTAGCACAAAT
*
69327473 GCCTTCGGGTCTTAACCCGGTTATA
1 GCCTTCGGGTCTTAACCCGGATATA
69327498 ATTTCCAGCA
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
38 1 0.02
39 23 0.43
40 30 0.56
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAACCCGGATATAGCCACTAGCACAAAT
Found at i:69332667 original size:39 final size:39
Alignment explanation
Indices: 69332576--69332679 Score: 138
Period size: 39 Copynumber: 2.7 Consensus size: 39
69332566 AAATCCTTGC
* *
69332576 TATAATTATTGTAATTATAA-TTTATGATCGAATATTAT
1 TATAATTATTGTAATTATAATTTTATGATCAAAAATTAT
* * *
69332614 TATAATTATTGTAATTGTAATTTTTTGGTCAAAAATTAT
1 TATAATTATTGTAATTATAATTTTATGATCAAAAATTAT
*
69332653 TATAATTATGGTAATTATAATTATTAT
1 TATAATTATTGTAATTATAATT-TTAT
69332680 ATTCAGTTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 19 0.34
39 34 0.61
40 3 0.05
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (39 bp):
TATAATTATTGTAATTATAATTTTATGATCAAAAATTAT
Found at i:69340583 original size:40 final size:39
Alignment explanation
Indices: 69340539--69340664 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
69340529 GGGACTCAAC
*
69340539 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
** * * *
69340579 CCGGATTTAGTAACTCACACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
69340619 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
69340659 CCGGAT
1 CCGGAT
69340665 ATCATTCGAA
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
40 63 0.90
41 7 0.10
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:69342766 original size:28 final size:28
Alignment explanation
Indices: 69342720--69342806 Score: 111
Period size: 28 Copynumber: 3.1 Consensus size: 28
69342710 ATACCGTTGA
* * *
69342720 ATACTCAATGTCTCGCACACTAAGTGTC
1 ATACTCGATATCTCGCACACTAAGTGCC
** *
69342748 ATACTCGATATCTTTCACAATAAGTGCC
1 ATACTCGATATCTCGCACACTAAGTGCC
*
69342776 ACACTCGATATCTCGCACACTAAGTGCC
1 ATACTCGATATCTCGCACACTAAGTGCC
69342804 ATA
1 ATA
69342807 TATAGCCGAA
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (28 bp):
ATACTCGATATCTCGCACACTAAGTGCC
Found at i:69342843 original size:40 final size:40
Alignment explanation
Indices: 69342788--69342884 Score: 149
Period size: 40 Copynumber: 2.4 Consensus size: 40
69342778 ACTCGATATC
*
69342788 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAA
* * *
69342828 TCGCACACTAAGTGCCATATATAGCTAAAGTTATGTCGCA
1 TCGCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAA
*
69342868 TCACACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
69342885 CAAATAACTG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCAAAGCTATGTCGAA
Found at i:69346764 original size:16 final size:15
Alignment explanation
Indices: 69346739--69346768 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
69346729 AATCCCCTGC
69346739 CAGTCAAACAGTAAA
1 CAGTCAAACAGTAAA
69346754 CAGTGCAAACAGTAA
1 CAGT-CAAACAGTAA
69346769 CGGTCTGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.50, C:0.20, G:0.17, T:0.13
Consensus pattern (15 bp):
CAGTCAAACAGTAAA
Found at i:69348422 original size:23 final size:23
Alignment explanation
Indices: 69348379--69348422 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
69348369 TCAAGGCTCC
*
69348379 AAGAGGGAAAAGAAGTTAAGAGT
1 AAGAGGGAAAAGAAGTAAAGAGT
69348402 AAGAGGGAGAAAGAAG-AAAGA
1 AAGAGGGA-AAAGAAGTAAAGA
69348423 AGAAAGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.57, C:0.00, G:0.36, T:0.07
Consensus pattern (23 bp):
AAGAGGGAAAAGAAGTAAAGAGT
Found at i:69355535 original size:39 final size:39
Alignment explanation
Indices: 69355389--69355572 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 39
69355379 TCGAATGATG
* * *
69355389 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
69355429 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
**
69355469 TCCGAACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
69355509 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAG-TACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
69355548 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
69355573 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
38 14 0.11
39 35 0.27
40 73 0.56
41 8 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69355605 original size:78 final size:79
Alignment explanation
Indices: 69355436--69355595 Score: 195
Period size: 78 Copynumber: 2.0 Consensus size: 79
69355426 ATATCCGGAC
**
69355436 TAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGAACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCCGAACTAAGATCCGAAGGCATTTGAACGAG
69355501 TTACTAAATCCGGGT
65 TTACTAAATCCGGGT
** *
69355516 TAAGTCCGAAGGCATTTGTGCGAG-TACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGA
1 TAAGTCCGAAGGCATTTGTGCGAGTTACTA-AATCCGAACTAAGAT-CCGAAGGCATTTGAACGA
*
69355578 G-TAGCTATATCC-GGT
64 GTTA-CTAAATCCGGGT
69355593 TAA
1 TAA
69355596 ATTCTGAAGG
Statistics
Matches: 71, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
77 9 0.13
78 36 0.51
79 22 0.31
80 4 0.06
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (79 bp):
TAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCGAACTAAGATCCGAAGGCATTTGAACGAGT
TACTAAATCCGGGT
Found at i:69363698 original size:40 final size:40
Alignment explanation
Indices: 69363508--69363691 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
69363498 TCGAATGATG
* *
69363508 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT--A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
69363546 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69363586 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69363626 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
69363667 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69363692 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
38 24 0.18
39 9 0.07
40 98 0.74
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69363698 original size:80 final size:79
Alignment explanation
Indices: 69363559--69363714 Score: 210
Period size: 80 Copynumber: 2.0 Consensus size: 79
69363549 GGACTAAGAT
**
69363559 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
69363623 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* *
69363639 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
*
69363702 TATATCCGGTTAA
64 TAAATCCGGTTAA
69363715 ACTCCGAAGG
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
79 9 0.13
80 57 0.84
81 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:69370923 original size:40 final size:40
Alignment explanation
Indices: 69370817--69371000 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
69370807 TGCTGGAAAT
* * * * * **
69370817 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
69370857 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
69370897 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
69370935 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
69370976 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
69371001 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Done.