Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 231 of 335
Found at i:69721790 original size:51 final size:51
Alignment explanation
Indices: 69721710--69721831 Score: 176
Period size: 51 Copynumber: 2.4 Consensus size: 51
69721700 GAGGAAGTGC
** * *
69721710 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACC-
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAAGGATT-TGCCCCAGTTTACCA
*
69721761 GAAAGGGCTTATGCCCCAGTTTACCGAAAAAGGATTTGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAAGGATTTGCCCCAGTTTACCA
69721812 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
69721832 ATTAAAATAG
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
50 24 0.38
51 40 0.62
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAAGGATTTGCCCCAGTTTACCA
Found at i:69721999 original size:42 final size:42
Alignment explanation
Indices: 69721953--69722043 Score: 121
Period size: 42 Copynumber: 2.2 Consensus size: 42
69721943 GAGAGTAGCG
*** *
69721953 AATGGGCTTGCATACATTC-ATTGGTATTTCATATGATATTGA
1 AATGGGCTTGCATACA-TCGATTAACATTACATATGATATTGA
*
69721995 AATGGGCTTGCATACATCGATTAACATTACATGTGATATTGA
1 AATGGGCTTGCATACATCGATTAACATTACATATGATATTGA
69722037 AATGGGC
1 AATGGGC
69722044 CTATGGGCCA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
41 2 0.05
42 41 0.95
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (42 bp):
AATGGGCTTGCATACATCGATTAACATTACATATGATATTGA
Found at i:69722103 original size:31 final size:31
Alignment explanation
Indices: 69722067--69722172 Score: 176
Period size: 31 Copynumber: 3.4 Consensus size: 31
69722057 CGTTTACATT
* * *
69722067 AAAGGCTTTGGCCTAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
69722098 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
69722129 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
69722160 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
69722173 TAGTAACCAT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:69728804 original size:9 final size:9
Alignment explanation
Indices: 69728790--69728814 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
69728780 CTTAAACACC
69728790 TGAGTGATT
1 TGAGTGATT
69728799 TGAGTGATT
1 TGAGTGATT
69728808 TGAGTGA
1 TGAGTGA
69728815 ATCTTTAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.36, T:0.40
Consensus pattern (9 bp):
TGAGTGATT
Found at i:69731198 original size:5 final size:5
Alignment explanation
Indices: 69731188--69731212 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
69731178 GATACCAACC
69731188 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
69731213 TTTTTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:69737154 original size:27 final size:27
Alignment explanation
Indices: 69737116--69737456 Score: 380
Period size: 27 Copynumber: 12.6 Consensus size: 27
69737106 TTAATTTACC
69737116 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
69737143 AAATCACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
69737170 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
69737197 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
69737224 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * **
69737251 AAATTACTAAAATACCCTTTGTTCATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
69737278 AAATTACCAAAATACTCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
69737305 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
69737332 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
69737359 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
69737386 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
** **
69737413 AAATTATGAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
69737440 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
69737457 TTGATTTATA
Statistics
Matches: 266, Mismatches: 46, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
26 4 0.02
27 260 0.98
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:69737528 original size:27 final size:27
Alignment explanation
Indices: 69737495--69737752 Score: 363
Period size: 27 Copynumber: 9.6 Consensus size: 27
69737485 CAATTTATAA
* *
69737495 AATTACCGAAATACCCTTCTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * *
69737522 AAATACCGAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
69737549 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
69737576 AATTACCGCAATACCCCTATAGGGTAA
1 AATTACCGAAATACCCCTATAGGGTAG
69737603 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
69737630 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* *
69737657 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
*
69737684 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
** * * *
69737711 AATTACTAAAATACCCCTGTAGTGTGG
1 AATTACCGAAATACCCCTATAGGGTAG
*
69737738 AATTACCGAGATACC
1 AATTACCGAAATACC
69737753 TTGTGGGGTA
Statistics
Matches: 208, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 208 1.00
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATAGGGTAG
Found at i:69738249 original size:22 final size:22
Alignment explanation
Indices: 69738197--69738261 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
69738187 TTAAAGCATT
* *
69738197 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
69738219 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
69738241 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
69738262 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:69738450 original size:27 final size:27
Alignment explanation
Indices: 69738420--69738503 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
69738410 ATTCTGTTAA
* *
69738420 GTGGATTTGCCAC-ATTATCTATTTCTG
1 GTGGATTTGCCACAAATATCT-GTTCTG
*
69738447 GTGGCTTTGCCACAAATATCTGTTCTG
1 GTGGATTTGCCACAAATATCTGTTCTG
* * *
69738474 GTGGCTCTGCTAC-AATATCTGTATCTG
1 GTGGATTTGCCACAAATATCTGT-TCTG
69738501 GTG
1 GTG
69738504 ACTCTGTCAC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
26 9 0.18
27 35 0.70
28 6 0.12
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (27 bp):
GTGGATTTGCCACAAATATCTGTTCTG
Found at i:69738508 original size:27 final size:26
Alignment explanation
Indices: 69738442--69738521 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 26
69738432 CATTATCTAT
* *
69738442 TTCTGGTGGCTTTGCCACAAATATCTG
1 TTCTGGTGGCTCTGCTAC-AATATCTG
69738469 TTCTGGTGGCTCTGCTACAATATCTG
1 TTCTGGTGGCTCTGCTACAATATCTG
*
69738495 TATCTGGTGACTCTG-TCACAATATCTG
1 T-TCTGGTGGCTCTGCT-ACAATATCTG
69738522 ATAACTGAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
26 10 0.21
27 38 0.79
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCTACAATATCTG
Found at i:69738699 original size:32 final size:32
Alignment explanation
Indices: 69738658--69738738 Score: 101
Period size: 32 Copynumber: 2.6 Consensus size: 32
69738648 TTGCATTCAC
* * *
69738658 ATTCTGATTTTTTATTCTGTTACCTGATACTA
1 ATTCTGATTTTTGATTCTGTCACCTAATACTA
* *
69738690 ATTCTGATTTTTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTTGATTCTGTCACCTAATACTA
*
69738722 ATTCTGA-TTCTGATTCT
1 ATTCTGATTTTTGATTCT
69738739 AGTTATGATA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 9 0.21
32 34 0.79
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.52
Consensus pattern (32 bp):
ATTCTGATTTTTGATTCTGTCACCTAATACTA
Found at i:69743794 original size:17 final size:18
Alignment explanation
Indices: 69743772--69743807 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
69743762 AATATAGAAC
69743772 GTAATCTTCA-AAGATAT
1 GTAATCTTCAGAAGATAT
*
69743789 GTAATCTTTAGAAGATAT
1 GTAATCTTCAGAAGATAT
69743807 G
1 G
69743808 ATTCTATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.36
Consensus pattern (18 bp):
GTAATCTTCAGAAGATAT
Found at i:69744435 original size:20 final size:22
Alignment explanation
Indices: 69744396--69744435 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
69744386 AATGTTGCGC
*
69744396 GATTATATATAATTTAAAAATA
1 GATTATATATAATCTAAAAATA
69744418 GATT-TATA-AATCTAAAAA
1 GATTATATATAATCTAAAAA
69744436 GTATAGGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 4 0.24
22 4 0.24
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.38
Consensus pattern (22 bp):
GATTATATATAATCTAAAAATA
Found at i:69748875 original size:30 final size:30
Alignment explanation
Indices: 69748839--69748969 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
69748829 GACAAGATTG
* * * * *
69748839 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
69748869 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
69748897 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
69748927 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
69748956 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69748970 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:69748930 original size:58 final size:58
Alignment explanation
Indices: 69748839--69748969 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
69748829 GACAAGATTG
* * * * * *
69748839 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
69748897 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
69748956 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69748970 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:69756826 original size:30 final size:30
Alignment explanation
Indices: 69756790--69756920 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
69756780 GACAAGATTG
* * * * *
69756790 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
69756820 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
69756848 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
69756878 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
69756907 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69756921 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:69756881 original size:58 final size:58
Alignment explanation
Indices: 69756790--69756920 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
69756780 GACAAGATTG
* * * * * *
69756790 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
69756848 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
69756907 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
69756921 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:69763702 original size:45 final size:45
Alignment explanation
Indices: 69763622--69763730 Score: 161
Period size: 45 Copynumber: 2.5 Consensus size: 45
69763612 ATTTCACCTC
* * *
69763622 CTAGGCTCGAA-GCCCG-ATATCATTTCACCGGCATTATAGCCTG
1 CTAGGCTCAAAGGCCCGAATATCATCTCACCGACATTATAGCCTG
69763665 CTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGACATTATAGCCTG
1 CTAGGCTCAAAGGCCCGAATA-TCATCTCACCGACATTATAGCCTG
69763710 CTAGGCTCAAAGGCCCGAATA
1 CTAGGCTCAAAGGCCCGAATA
69763731 ATACTGTGTG
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
43 10 0.17
44 5 0.08
45 44 0.73
46 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CTAGGCTCAAAGGCCCGAATATCATCTCACCGACATTATAGCCTG
Found at i:69769189 original size:5 final size:5
Alignment explanation
Indices: 69769179--69769204 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
69769169 TGAGCATTCG
69769179 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
69769205 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:69770244 original size:9 final size:9
Alignment explanation
Indices: 69770230--69770266 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
69770220 TATAGTTTGA
69770230 TATTCGAAT
1 TATTCGAAT
69770239 TATTCGAAT
1 TATTCGAAT
*
69770248 TATTCGAGT
1 TATTCGAAT
69770257 TATTCGAAT
1 TATTCGAAT
69770266 T
1 T
69770267 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:69770332 original size:9 final size:9
Alignment explanation
Indices: 69770318--69770350 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
69770308 ATTCGAGTTG
69770318 ACTCGAATA
1 ACTCGAATA
*
69770327 ACTCGATTA
1 ACTCGAATA
69770336 ACTCGAATA
1 ACTCGAATA
69770345 ACTCGA
1 ACTCGA
69770351 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (9 bp):
ACTCGAATA
Found at i:69770341 original size:18 final size:18
Alignment explanation
Indices: 69770318--69770352 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
69770308 ATTCGAGTTG
69770318 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
69770336 ACTCGAATAACTCGATT
1 ACTCGAATAACTCGATT
69770353 CGTTTAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:69770997 original size:15 final size:16
Alignment explanation
Indices: 69770968--69770997 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69770958 CAAACATGCT
69770968 TTAACACATTATCAAA
1 TTAACACATTATCAAA
69770984 TTAACACA-TATCAA
1 TTAACACATTATCAA
69770998 TAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:69773485 original size:42 final size:42
Alignment explanation
Indices: 69773334--69773487 Score: 166
Period size: 42 Copynumber: 3.6 Consensus size: 42
69773324 TACTATACCA
* **
69773334 ATGCCATATCCCAGATATGGTCTTATATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* * * * *
69773376 ATGCAAATAGCCCAGCTATGGTCTTGCACGAAATCTCATATCG
1 ATGC-CATATCCCAGATATGGTCTTACATGAAATCTCATATCG
* **
69773419 ATGCCATATCTCAGATATCATCTTACATGAAATCTCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCAT-ATCG
* *
69773461 AAGCCATATCCCAAATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
69773488 CATACTCTCG
Statistics
Matches: 89, Mismatches: 21, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
42 53 0.60
43 36 0.40
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAATCTCATATCG
Found at i:69773823 original size:72 final size:72
Alignment explanation
Indices: 69773706--69773849 Score: 261
Period size: 72 Copynumber: 2.0 Consensus size: 72
69773696 AATCATCAAA
** *
69773706 TACTTTGTTTTTCCCCTGATCTAGGTCTGAACCTTGTTTCTCTTGAGCTATAATAGCAATTTTAA
1 TACTTTGTTTTTCCCCCAATCTAGGTCTGAACCTCGTTTCTCTTGAGCTATAATAGCAATTTTAA
69773771 CTCATTT
66 CTCATTT
69773778 TACTTTGTTTTTCCCCCAATCTAGGTCTGAACCTCGTTTCTCTTGAGCTATAATAGCAATTTTAA
1 TACTTTGTTTTTCCCCCAATCTAGGTCTGAACCTCGTTTCTCTTGAGCTATAATAGCAATTTTAA
69773843 CTCATTT
66 CTCATTT
69773850 ATTAATCACA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (72 bp):
TACTTTGTTTTTCCCCCAATCTAGGTCTGAACCTCGTTTCTCTTGAGCTATAATAGCAATTTTAA
CTCATTT
Found at i:69774956 original size:25 final size:25
Alignment explanation
Indices: 69774899--69774973 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 25
69774889 ATGTATGCTC
*
69774899 ATATGAGCTATGAATCGGTATGCTCT
1 ATATGAGCTATGAATCGGTAAGCT-T
* * *
69774925 -CACGAGCTATAAATCGGTAAGCTT
1 ATATGAGCTATGAATCGGTAAGCTT
69774949 ATATGAGCTGA-GAATCGGTAAGCTT
1 ATATGAGCT-ATGAATCGGTAAGCTT
69774974 TTAATACCTG
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
24 1 0.03
25 38 0.95
26 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (25 bp):
ATATGAGCTATGAATCGGTAAGCTT
Found at i:69774984 original size:25 final size:25
Alignment explanation
Indices: 69774936--69775021 Score: 95
Period size: 25 Copynumber: 3.5 Consensus size: 25
69774926 ACGAGCTATA
69774936 AATCGGTAAGCTTAT-ATGAGCTGAG
1 AATCGGTAAGCTTATAAT-AGCTGAG
* *
69774961 AATCGGTAAGCTTTTAATACCTGA-
1 AATCGGTAAGCTTATAATAGCTGAG
* **
69774985 AATCGCTAAGCTTATACGAGCTGAG
1 AATCGGTAAGCTTATAATAGCTGAG
*
69775010 ATTCGGTAAGCT
1 AATCGGTAAGCT
69775022 CTCACGATCT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
24 19 0.38
25 29 0.58
26 2 0.04
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.29
Consensus pattern (25 bp):
AATCGGTAAGCTTATAATAGCTGAG
Found at i:69775008 original size:24 final size:24
Alignment explanation
Indices: 69774926--69775021 Score: 93
Period size: 25 Copynumber: 3.9 Consensus size: 24
69774916 GTATGCTCTC
*
69774926 ACGAGCTATAAATCGGTAAGCTTAT
1 ACGAGCT-GAAATCGGTAAGCTTAT
* *
69774951 ATGAGCTGAGAATCGGTAAGCTTTT
1 ACGAGCTGA-AATCGGTAAGCTTAT
** * *
69774976 AATACCTGAAATCGCTAAGCTTAT
1 ACGAGCTGAAATCGGTAAGCTTAT
*
69775000 ACGAGCTGAGATTCGGTAAGCT
1 ACGAGCTGA-AATCGGTAAGCT
69775022 CTCACGATCT
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
24 20 0.36
25 36 0.64
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (24 bp):
ACGAGCTGAAATCGGTAAGCTTAT
Found at i:69775034 original size:49 final size:49
Alignment explanation
Indices: 69774910--69775037 Score: 148
Period size: 49 Copynumber: 2.6 Consensus size: 49
69774900 TATGAGCTAT
* * * * *
69774910 GAATCGGTATGCTCTCACGAGCTATAAATCGGTAAGCTTATATGAGCTGA
1 GAATCGGTAAGCTCTCACGACCT-GAAATCGCTAAGCTTATACGAGCTGA
* * **
69774960 GAATCGGTAAGCTTTTAATACCTGAAATCGCTAAGCTTATACGAGCTGA
1 GAATCGGTAAGCTCTCACGACCTGAAATCGCTAAGCTTATACGAGCTGA
* *
69775009 GATTCGGTAAGCTCTCACGATCTGAAATC
1 GAATCGGTAAGCTCTCACGACCTGAAATC
69775038 AGTTATCCCT
Statistics
Matches: 63, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
49 46 0.73
50 17 0.27
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (49 bp):
GAATCGGTAAGCTCTCACGACCTGAAATCGCTAAGCTTATACGAGCTGA
Found at i:69776612 original size:85 final size:87
Alignment explanation
Indices: 69776413--69776612 Score: 244
Period size: 87 Copynumber: 2.3 Consensus size: 87
69776403 ACCACTTACA
* * *
69776413 GGAATGAATTCCGAAACAAATTTTATTTAATTTAAATTCTCGTTTTTGGAAACAAAAGCAAATCA
1 GGAATAAATCCCGAAACAAATTTTATTTAATTTAAATTCTCGATTTTGGAAACAAAAGCAAATCA
** * *
69776478 AATAAATCTTTATTAAGTGGTG
66 AATAAATCCGTATGAAGCGGTG
* * * *
69776500 GGAATAAATCCCGAAACATATTTTATTTAATTTAATTTCTC-ATTTTGGAAACAAAATCAAAATG
1 GGAATAAATCCCGAAACAAATTTTATTTAATTTAAATTCTCGATTTTGGAAACAAAAGC-AAATC
*
69776564 TAATAAATCCGT-TGAA-CGGTG
65 AAATAAATCCGTATGAAGCGGTG
* *
69776585 GGAATCAATCCTGAAACAAATTTTATTT
1 GGAATAAATCCCGAAACAAATTTTATTT
69776613 TACTCGTTTT
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
85 29 0.30
86 18 0.19
87 50 0.52
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (87 bp):
GGAATAAATCCCGAAACAAATTTTATTTAATTTAAATTCTCGATTTTGGAAACAAAAGCAAATCA
AATAAATCCGTATGAAGCGGTG
Found at i:69776674 original size:79 final size:79
Alignment explanation
Indices: 69776542--69776846 Score: 388
Period size: 79 Copynumber: 3.9 Consensus size: 79
69776532 TAATTTCTCA
* * * * * * *
69776542 TTTTGGAAACAAAATCAAAA--TGTAATAAATCCGTTGAACGGTGGGAATCAATCCTGAAACAAA
1 TTTTGGAAATAAAA-CAAAATTTGGAATAAATTCGTTGAACAGTGAGAATCAATCCCGAAACAGA
69776605 TTTTATTTTACTCGT
65 TTTTATTTTACTCGT
* **
69776620 TTTTGGAAATAAAACAAAATTTGGAATAAATTCGTTGAACAGTGGGAATCAATCCCGAAATGGAT
1 TTTTGGAAATAAAACAAAATTTGGAATAAATTCGTTGAACAGTGAGAATCAATCCCGAAACAGAT
*
69776685 TTTATTTTACTTGT
66 TTTATTTTACTCGT
* * * *
69776699 TTTTTGAAATAAAACAAAATTTGGAATAAAATCATTGAACAGCGAGAATCAATCCCGAAACAGAT
1 TTTTGGAAATAAAACAAAATTTGGAATAAATTCGTTGAACAGTGAGAATCAATCCCGAAACAGAT
69776764 TTTATTTTACTCGT
66 TTTATTTTACTCGT
* **
69776778 TTTTTGAAAT--AA-AAAATTTGGAATGAAATT-GTTGAATGGTGAGAATCAATCCCGAAACAGA
1 TTTTGGAAATAAAACAAAATTTGGAAT-AAATTCGTTGAACAGTGAGAATCAATCCCGAAACAGA
69776839 TTTTATTT
65 TTTTATTT
69776847 ACCTTTAATT
Statistics
Matches: 202, Mismatches: 22, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
76 47 0.23
77 11 0.05
78 13 0.06
79 131 0.65
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (79 bp):
TTTTGGAAATAAAACAAAATTTGGAATAAATTCGTTGAACAGTGAGAATCAATCCCGAAACAGAT
TTTATTTTACTCGT
Found at i:69779130 original size:16 final size:18
Alignment explanation
Indices: 69779109--69779141 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
69779099 CATACTAGCT
69779109 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
69779125 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
69779142 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:69779777 original size:45 final size:45
Alignment explanation
Indices: 69779713--69779887 Score: 287
Period size: 45 Copynumber: 3.9 Consensus size: 45
69779703 AGATATCATT
* * * * *
69779713 TCACTGGCATTATATCCTGCTAGGCTCAAAGTCCCGAACAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
69779758 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
69779803 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
69779848 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
69779888 ATACTGTGCG
Statistics
Matches: 122, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 122 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:69782948 original size:39 final size:40
Alignment explanation
Indices: 69782896--69783004 Score: 125
Period size: 39 Copynumber: 2.8 Consensus size: 40
69782886 CTGGAAATTA
* * *
69782896 TATCCGGGTTAAGACCCGAAGGCAATTGTGTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTG-AGAGACATAC
* *
69782936 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGAGAGACATAC
*
69782975 TATCCGGGCTAAGACCCGAAGGCATTTGTG
1 TATCCGGGCTAAGACCCGAAGGCAATTGTG
69783005 CACGTGATTA
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
38 6 0.10
39 26 0.44
40 25 0.42
41 2 0.03
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGAGAGACATAC
Found at i:69782953 original size:79 final size:79
Alignment explanation
Indices: 69782857--69783004 Score: 194
Period size: 79 Copynumber: 1.9 Consensus size: 79
69782847 ATTGAATGAT
*
69782857 ATCCGGGCTAAATCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAATCCCGAAGAC-ATTCATGC-GAGAAATTATATCCGGGCTAAGACCCGAAGGCA
69782920 ATTGTGTAGTGGCTAC
64 ATTGTGTAGTGGCTAC
* * * * *
69782936 ATCCGGGCTAAGA-CCCGAAGGCATTCGTGCGAGACATTCTATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAA-ATCCCGAAGACATTCATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
69783000 TTGTG
65 TTGTG
69783005 CACGTGATTA
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
78 4 0.07
79 55 0.92
80 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (79 bp):
ATCCGGGCTAAATCCCGAAGACATTCATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGTAGTGGCTAC
Found at i:69783019 original size:40 final size:39
Alignment explanation
Indices: 69782892--69783021 Score: 152
Period size: 40 Copynumber: 3.3 Consensus size: 39
69782882 TATGCTGGAA
* * *
69782892 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTG
** * * **
69782931 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AGTG
*
69782971 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-GTG
69783011 ATTATATCCGG
1 ATTATATCCGG
69783022 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 3
0.78 0.18 0.03
Matches are distributed among these distances:
39 29 0.40
40 43 0.60
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAGTG
Found at i:69790871 original size:40 final size:40
Alignment explanation
Indices: 69790806--69790955 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
69790796 AAATTGAATG
* *
69790806 ATATCCGGGCT-A-ACCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
69790844 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
69790884 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
69790924 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
69790956 ACGTGATTAT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
38 10 0.11
39 4 0.04
40 73 0.82
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:69790969 original size:40 final size:40
Alignment explanation
Indices: 69790841--69790971 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
69790831 TATGCTGGAA
* * *
69790841 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
69790881 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
69790921 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
69790961 ATTATATCCGG
1 ATTATATCCGG
69790972 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:69796985 original size:40 final size:40
Alignment explanation
Indices: 69796940--69797104 Score: 176
Period size: 39 Copynumber: 4.2 Consensus size: 40
69796930 CGGAATATAA
69796940 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
69796980 CCGGATAGAAT-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
69797019 CCGGAT-TAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
69797058 CCGGATATAATTTCCAGCATAATTGTCTTCGGGT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
69797097 CCGGATAT
1 CCGGATAT
69797105 CATTCAATTT
Statistics
Matches: 105, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
38 2 0.02
39 73 0.70
40 30 0.29
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69810683 original size:39 final size:39
Alignment explanation
Indices: 69810629--69810791 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
69810619 TGTGTATGAA
*
69810629 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
69810668 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
69810707 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
69810746 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGCCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
69810786 TGTGCG
1 TGTGCG
69810792 GGTTACCATA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 97 0.86
40 16 0.14
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:69816041 original size:56 final size:53
Alignment explanation
Indices: 69815971--69816077 Score: 128
Period size: 54 Copynumber: 1.9 Consensus size: 53
69815961 AGGTGTTTCC
*
69815971 TTTCATAGATTTGTCACAAAGGCTATCCTTTAACAG-ATTCGCCAAAAAGGCTTAAT
1 TTTCATAGATTTGTCAC--AGG-TATCCTTAAACAGAATT-GCCAAAAAGGCTTAAT
*
69816027 TTTC-TAGAGTTTGTCACAGGTATCCTTAAACAGAAATTGCCACAAAGGCTT
1 TTTCATAGA-TTTGTCACAGGTATCCTTAAACAG-AATTGCCAAAAAGGCTT
69816078 TTTTCTCTTG
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
53 12 0.26
54 15 0.33
55 7 0.15
56 12 0.26
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.32
Consensus pattern (53 bp):
TTTCATAGATTTGTCACAGGTATCCTTAAACAGAATTGCCAAAAAGGCTTAAT
Found at i:69816360 original size:53 final size:53
Alignment explanation
Indices: 69816193--69816449 Score: 220
Period size: 53 Copynumber: 4.9 Consensus size: 53
69816183 TCCTTAAATT
* * * *
69816193 TTTCCATATGATGCCATAACCTACCAGTTAC-GATCTTACATGATATGGTATTC
1 TTTCCATATGATGACATAACCCACCAGTTACTG-TCTTACACGATATGGTCTTC
* * * * * * * * *
69816246 TTTCTATATAAT-A-TTATCCTACCTGTTACGGTCTTACACGATATGGACTTT
1 TTTCCATATGATGACATAACCCACCAGTTACTGTCTTACACGATATGGTCTTC
* * * *
69816297 TTTCCATATGATGATATAACCCACCAGTTACTGTCATACATGATACGGTCTTC
1 TTTCCATATGATGACATAACCCACCAGTTACTGTCTTACACGATATGGTCTTC
* * *
69816350 TTTCCATATGATGCCATAACCCACCAATTA-TGGTCTTACACGATATGATCTTC
1 TTTCCATATGATGACATAACCCACCAGTTACT-GTCTTACACGATATGGTCTTC
* * * *
69816403 TTTTCATATGATTG-CGTAACCTACCAGTTA-TGATTTTACACGATATG
1 TTTCCATATGA-TGACATAACCCACCAGTTACTG-TCTTACACGATATG
69816450 ATCCTTTCAC
Statistics
Matches: 164, Mismatches: 34, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
51 39 0.24
52 4 0.02
53 119 0.73
54 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (53 bp):
TTTCCATATGATGACATAACCCACCAGTTACTGTCTTACACGATATGGTCTTC
Found at i:69829417 original size:12 final size:12
Alignment explanation
Indices: 69829400--69829425 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69829390 AAAATAGGGC
69829400 TTTAGCGGCGTT
1 TTTAGCGGCGTT
69829412 TTTAGCGGCGTT
1 TTTAGCGGCGTT
69829424 TT
1 TT
69829426 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:69829496 original size:36 final size:38
Alignment explanation
Indices: 69829449--69829684 Score: 164
Period size: 41 Copynumber: 6.1 Consensus size: 38
69829439 GCAAAAATTA
*
69829449 TAAAACACAGAGCAATAGCGGCG-TTT-AAAAACGCCGC
1 TAAAA-ACAGAGCATTAGCGGCGCTTTGAAAAACGCCGC
**
69829486 TAAAAACAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGC-TTT-GAAAAACGCCGC
*
69829526 TAAAAACAGAGCATTAGC-GC-C----AAAAGCGCCGC
1 TAAAAACAGAGCATTAGCGGCGCTTTGAAAAACGCCGC
* * * **
69829558 TAAAGACCAGAGCATTAGTGGCGTTTTTGGTGAAACGCCGC
1 TAAA-AACAGAGCATTAGCGGCG-CTTT-GAAAAACGCCGC
* * *
69829599 TAAAGACCAGAGCATTAGCGGAGCTTTTGGTAAAACGCCGC
1 TAAA-AACAGAGCATTAGCGGCGC-TTT-GAAAAACGCCGC
* * **
69829640 TAAAGACCATAGCATTAGCGGCGCTTTTGGTGAAACGCCGC
1 TAAA-AACAGAGCATTAGCGGCGC-TTT-GAAAAACGCCGC
69829681 TAAA
1 TAAA
69829685 GATACCAACT
Statistics
Matches: 166, Mismatches: 19, Indels: 24
0.79 0.09 0.11
Matches are distributed among these distances:
32 12 0.07
33 12 0.07
34 2 0.01
36 16 0.10
37 5 0.03
38 4 0.02
39 2 0.01
40 27 0.16
41 86 0.52
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (38 bp):
TAAAAACAGAGCATTAGCGGCGCTTTGAAAAACGCCGC
Found at i:69829609 original size:41 final size:41
Alignment explanation
Indices: 69829552--69829686 Score: 225
Period size: 41 Copynumber: 3.3 Consensus size: 41
69829542 GCGCCAAAAG
* *
69829552 CGCCGCTAAAGACCAGAGCATTAGTGGCGTTTTTGGTGAAA
1 CGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGTGAAA
* *
69829593 CGCCGCTAAAGACCAGAGCATTAGCGGAGCTTTTGGTAAAA
1 CGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGTGAAA
*
69829634 CGCCGCTAAAGACCATAGCATTAGCGGCGCTTTTGGTGAAA
1 CGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGTGAAA
69829675 CGCCGCTAAAGA
1 CGCCGCTAAAGA
69829687 TACCAACTAG
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 87 1.00
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (41 bp):
CGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGTGAAA
Found at i:69829749 original size:15 final size:14
Alignment explanation
Indices: 69829725--69829758 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
69829715 CTATTTTAAT
*
69829725 GTTTATGGATTATGG
1 GTTTAGGGATTAT-G
69829740 GTTTAGGGATTATG
1 GTTTAGGGATTATG
69829754 GTTTA
1 GTTTA
69829759 AAGGTAGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (14 bp):
GTTTAGGGATTATG
Found at i:69829853 original size:7 final size:7
Alignment explanation
Indices: 69829777--69829897 Score: 93
Period size: 7 Copynumber: 17.1 Consensus size: 7
69829767 TTAAGGGTTG
69829777 GGGTTTA
1 GGGTTTA
*
69829784 AGGTTTA
1 GGGTTTA
69829791 -GGTGTTA
1 GGGT-TTA
*
69829798 GGGGTTA
1 GGGTTTA
*
69829805 GGGGTTA
1 GGGTTTA
*
69829812 GGGGTTA
1 GGGTTTA
*
69829819 GGGGTTCA
1 -GGGTTTA
*
69829827 GGGTTCA
1 GGGTTTA
*
69829834 TGGTTTA
1 GGGTTTA
69829841 GGGTTTA
1 GGGTTTA
69829848 GGGTTTA
1 GGGTTTA
* *
69829855 TGTTTTA
1 GGGTTTA
69829862 -GGTTTA
1 GGGTTTA
**
69829868 ATGTTTA
1 GGGTTTA
*
69829875 GGGATTA
1 GGGTTTA
69829882 GGAGTTTA
1 GG-GTTTA
69829890 GGGTTTA
1 GGGTTTA
69829897 G
1 G
69829898 ATTAGTTAGT
Statistics
Matches: 94, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
6 8 0.09
7 73 0.78
8 13 0.14
ACGTcount: A:0.17, C:0.02, G:0.40, T:0.40
Consensus pattern (7 bp):
GGGTTTA
Found at i:69830533 original size:16 final size:16
Alignment explanation
Indices: 69830512--69830543 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69830502 AAAAATCTTC
*
69830512 ATAAAAAATTTAAAAA
1 ATAAAAAACTTAAAAA
69830528 ATAAAAAACTTAAAAA
1 ATAAAAAACTTAAAAA
69830544 TTTAATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (16 bp):
ATAAAAAACTTAAAAA
Found at i:69834332 original size:27 final size:27
Alignment explanation
Indices: 69834297--69834349 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
69834287 TATTTTGATA
69834297 ATGAATTTTA-AACT-TTTTATATTTTTC
1 ATGAATTTTATAA-TATTTTAT-TTTTTC
*
69834324 ATGACTTTTATAATATTTTATTTTTT
1 ATGAATTTTATAATATTTTATTTTTT
69834350 AAAATTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (27 bp):
ATGAATTTTATAATATTTTATTTTTTC
Found at i:69834428 original size:43 final size:43
Alignment explanation
Indices: 69834363--69834461 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
69834353 ATTTTATGAC
*
69834363 CTTTAGCGGCGTTTGCGGGAAAAGCGCCGCGAAAAGTCCTGGA
1 CTTTAGCGGCGTTTGCGAGAAAAGCGCCGCGAAAAGTCCTGGA
*** * *
69834406 CTTTAGCGGCGTTTTTTAGAAAAGCGCCGCTAAAAGTCCTGGT
1 CTTTAGCGGCGTTTGCGAGAAAAGCGCCGCGAAAAGTCCTGGA
69834449 CTTTAGCGGCGTT
1 CTTTAGCGGCGTT
69834462 GCATATAGCG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.26
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGCGAGAAAAGCGCCGCGAAAAGTCCTGGA
Found at i:69840214 original size:16 final size:16
Alignment explanation
Indices: 69840189--69840223 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
69840179 AAAAACCACA
*
69840189 TAGTTGAGAGAATTAC
1 TAGTTAAGAGAATTAC
*
69840205 TAGTTAAGAGTATTAC
1 TAGTTAAGAGAATTAC
69840221 TAG
1 TAG
69840224 CACATGTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.34
Consensus pattern (16 bp):
TAGTTAAGAGAATTAC
Found at i:69840497 original size:40 final size:40
Alignment explanation
Indices: 69840442--69840523 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
69840432 GGAGAAAGCC
69840442 TATTGAATGCTTAGTAAGTTAATATTAAATTTACTTAACT
1 TATTGAATGCTTAGTAAGTTAATATTAAATTTACTTAACT
*
69840482 TATTGAATGCTTAGTAAGTTAATATTATATTTACTTAACT
1 TATTGAATGCTTAGTAAGTTAATATTAAATTTACTTAACT
69840522 TA
1 TA
69840524 CCTTAACATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (40 bp):
TATTGAATGCTTAGTAAGTTAATATTAAATTTACTTAACT
Found at i:69840507 original size:22 final size:22
Alignment explanation
Indices: 69840442--69840507 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
69840432 GGAGAAAGCC
69840442 TATTGAATGCTTAGTAAGTTAA
1 TATTGAATGCTTAGTAAGTTAA
* * *
69840464 TATTAAAT--TTACTTAA-CT--
1 TATTGAATGCTTA-GTAAGTTAA
69840482 TATTGAATGCTTAGTAAGTTAA
1 TATTGAATGCTTAGTAAGTTAA
69840504 TATT
1 TATT
69840508 ATATTTACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
18 7 0.22
19 3 0.09
20 8 0.25
21 3 0.09
22 11 0.34
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (22 bp):
TATTGAATGCTTAGTAAGTTAA
Found at i:69847893 original size:88 final size:88
Alignment explanation
Indices: 69847744--69848188 Score: 644
Period size: 88 Copynumber: 5.1 Consensus size: 88
69847734 ATTGAAAAGA
* * *
69847744 TTATGTGATGTTTGAACA-CTAATGAAGGTTAGCAGTTTAATCAGACATATTTTGT-AGTGAGGC
1 TTATGTGATGTATGAACATC-AATGAAAGTTAGCAGTTTAATCAGACATATTTTATGA-TGAGGC
69847807 ATAACATGCTAGCAACTCTTGAATT
64 ATAACATGCTAGCAACTCTTGAATT
* *
69847832 TTATGTGATGTATGAACATCGATGAAAGTTAGCAGTTTAATCAAACATATTTTATGATGAGGCAT
1 TTATGTGATGTATGAACATCAATGAAAGTTAGCAGTTTAATCAGACATATTTTATGATGAGGCAT
69847897 AACATGCTAGCAACTCTTGAATT
66 AACATGCTAGCAACTCTTGAATT
* * * * *
69847920 TTATGTGATGCATGAACATCGATCAAAGTTAGCAGTTTAATCAGACATATTTTATCATAAGGCAT
1 TTATGTGATGTATGAACATCAATGAAAGTTAGCAGTTTAATCAGACATATTTTATGATGAGGCAT
* *
69847985 AACATACCAGCAACTCTTGAATT
66 AACATGCTAGCAACTCTTGAATT
* *
69848008 TTATGTAATGCATGAACATCAATGAAAGTTAGCAGTTTAATCAGACATATTTTATGATGAGGCAT
1 TTATGTGATGTATGAACATCAATGAAAGTTAGCAGTTTAATCAGACATATTTTATGATGAGGCAT
*
69848073 AACATGCTAGCAACACTTGAATT
66 AACATGCTAGCAACTCTTGAATT
* * * *
69848096 TTTTATAATGTATGAACATCAATGAAAGTTAGCAGTTCAAT-AGGACATATTTTATGATGAGGCA
1 TTATGTGATGTATGAACATCAATGAAAGTTAGCAGTTTAATCA-GACATATTTTATGATGAGGCA
* * *
69848160 TAACTTGCTAGAAACTTTTGAATT
65 TAACATGCTAGCAACTCTTGAATT
69848184 TTATG
1 TTATG
69848189 GCAAAGTATC
Statistics
Matches: 324, Mismatches: 30, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
87 1 0.00
88 321 0.99
89 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (88 bp):
TTATGTGATGTATGAACATCAATGAAAGTTAGCAGTTTAATCAGACATATTTTATGATGAGGCAT
AACATGCTAGCAACTCTTGAATT
Found at i:69852166 original size:29 final size:29
Alignment explanation
Indices: 69852133--69852293 Score: 178
Period size: 29 Copynumber: 5.6 Consensus size: 29
69852123 GTGACGAGAT
*
69852133 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
69852162 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
69852191 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
69852220 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* ** * * ***
69852249 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
69852278 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
69852294 GGCTTAAATT
Statistics
Matches: 115, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 115 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:69856469 original size:17 final size:17
Alignment explanation
Indices: 69856447--69856481 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
69856437 CGTGCCCAAC
69856447 AAGCCTGAAATTCGCAA
1 AAGCCTGAAATTCGCAA
*
69856464 AAGCCTGAAATTTGCAA
1 AAGCCTGAAATTCGCAA
69856481 A
1 A
69856482 GAATATCAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (17 bp):
AAGCCTGAAATTCGCAA
Found at i:69858307 original size:28 final size:28
Alignment explanation
Indices: 69858259--69858312 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
69858249 TTTTAAATTC
69858259 TAATTAAAAAATTAAAG-AAAATTTACT
1 TAATTAAAAAATTAAAGAAAAATTTACT
* *
69858286 TAATTACAAAAATTATATAAAAATTTA
1 TAATTA-AAAAATTAAAGAAAAATTTA
69858313 GACCCTACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 6 0.26
28 9 0.39
29 8 0.35
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (28 bp):
TAATTAAAAAATTAAAGAAAAATTTACT
Found at i:69867313 original size:230 final size:231
Alignment explanation
Indices: 69866910--69867833 Score: 1793
Period size: 230 Copynumber: 4.0 Consensus size: 231
69866900 GAGAAATGGT
* *
69866910 ATAACAATTTTGAGAAAGCTATAACATAAATACAGAAACAAAGTCAATCCAGAGTCAAGTGTAAG
1 ATAACAATTTTGAGAAAGCTATGACATAAATACAGAAAAAAAGTCAATCCAGAGTCAAGTGTAAG
69866975 AGCTCAAACATTAAAATAGCAATCGCTAAATCCAAAGCAAAATGGAGAAATCAAACTCCTTCCTG
66 AGCTCAAACATTAAAATAGCAATCGCTAAATCCAAAGCAAAATGGAGAAATCAAACTCCTTCCTG
69867040 CTTCCCCTT-CCCCTGAGCATATGTCAGATCTATTTCAAGTACCCTCCCACTTCTATTCACACTT
131 CTTCCCCTTCCCCCTGAGCATATGTCAGATCTATTTCAAGTACCCTCCCACTTCTATTCACACTT
69867104 TCCTTTCTGTATATTTGTATGGAGGGTGGACTACTG
196 TCCTTTCTGTATATTTGTATGGAGGGTGGACTACTG
69867140 ATAACAATTTTGAGAAAGCTATGACATAAATACAGAAAAAAAGTCAATCCAGAGTCAAGTGTAAG
1 ATAACAATTTTGAGAAAGCTATGACATAAATACAGAAAAAAAGTCAATCCAGAGTCAAGTGTAAG
69867205 AGCTCAAACATTAAAATAGCAATCGCTAAATCCAAAGCAAAATGGAGAAATCAAACTCCTTCCTG
66 AGCTCAAACATTAAAATAGCAATCGCTAAATCCAAAGCAAAATGGAGAAATCAAACTCCTTCCTG
69867270 CTTCCCCTT-CCCCTGAGCATATGTCAGATCTATTTCAAGTACCCTCCCACTTCTATTCACACTT
131 CTTCCCCTTCCCCCTGAGCATATGTCAGATCTATTTCAAGTACCCTCCCACTTCTATTCACACTT
69867334 TCCTTTCTGTATATTTGTATGGAGGGTGGACTACTG
196 TCCTTTCTGTATATTTGTATGGAGGGTGGACTACTG
69867370 ATAACAATTTTGAGAAAGCTATGACATAAATACAGAAAAAAAGTCAATCCAGAGTCAAGTGTAAG
1 ATAACAATTTTGAGAAAGCTATGACATAAATACAGAAAAAAAGTCAATCCAGAGTCAAGTGTAAG
69867435 AGCTCAAACATTAAAATAGCAATCGCTAAATCCAAAGCAAAATGGAGAAATCAAACTCCTTCCTG
66 AGCTCAAACATTAAAATAGCAATCGCTAAATCCAAAGCAAAATGGAGAAATCAAACTCCTTCCTG
69867500 CTTCCCCTTCCCCCTGAGCATATGTCAGATCTATTTCAAGTACCCTCCCACTTCTATTCACACTT
131 CTTCCCCTTCCCCCTGAGCATATGTCAGATCTATTTCAAGTACCCTCCCACTTCTATTCACACTT
69867565 TCCTTTCTGTATATTTGTATGGAGGGTGGACTACTG
196 TCCTTTCTGTATATTTGTATGGAGGGTGGACTACTG
*
69867601 ATAACAATTTTGAGAAAGCTATGACATAAATACAGAAACAAAGTCAATCCAGAGTCAAGTGTAAG
1 ATAACAATTTTGAGAAAGCTATGACATAAATACAGAAAAAAAGTCAATCCAGAGTCAAGTGTAAG
69867666 AGCTCAAACATTAAAATAGCAATCGCTAAATCCAAAGCAAAATGGAGAAATCAAACTCCTTCCTG
66 AGCTCAAACATTAAAATAGCAATCGCTAAATCCAAAGCAAAATGGAGAAATCAAACTCCTTCCTG
69867731 CTTCCCCTTCCCCCTGAGCATATGTCAGATCTATTTCAAGTACCCTCCCACTTCTATT--CACTT
131 CTTCCCCTTCCCCCTGAGCATATGTCAGATCTATTTCAAGTACCCTCCCACTTCTATTCACACTT
69867794 TCCTTTCTGTATATTTGTATGGAGGGTGGACTACTG
196 TCCTTTCTGTATATTTGTATGGAGGGTGGACTACTG
69867830 ATAA
1 ATAA
69867834 TAGGTAGCTT
Statistics
Matches: 690, Mismatches: 3, Indels: 3
0.99 0.00 0.00
Matches are distributed among these distances:
229 45 0.07
230 367 0.53
231 278 0.40
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.28
Consensus pattern (231 bp):
ATAACAATTTTGAGAAAGCTATGACATAAATACAGAAAAAAAGTCAATCCAGAGTCAAGTGTAAG
AGCTCAAACATTAAAATAGCAATCGCTAAATCCAAAGCAAAATGGAGAAATCAAACTCCTTCCTG
CTTCCCCTTCCCCCTGAGCATATGTCAGATCTATTTCAAGTACCCTCCCACTTCTATTCACACTT
TCCTTTCTGTATATTTGTATGGAGGGTGGACTACTG
Found at i:69874900 original size:20 final size:21
Alignment explanation
Indices: 69874846--69874901 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
69874836 TGAATATATA
*
69874846 GAAATACAATCTTATAAATTT
1 GAAATACAATTTTATAAATTT
* * *
69874867 AAATATATAATTTTATATATTT
1 GAA-ATACAATTTTATAAATTT
69874889 GAAATA-AATTTTA
1 GAAATACAATTTTA
69874902 ATAGAAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 7 0.24
21 5 0.17
22 17 0.59
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.45
Consensus pattern (21 bp):
GAAATACAATTTTATAAATTT
Found at i:69875315 original size:9 final size:10
Alignment explanation
Indices: 69875291--69875327 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
69875281 GTCTATCTCT
69875291 AAAAAAATTAC
1 AAAAAAATT-C
69875302 AAAAAAATTC
1 AAAAAAATTC
*
69875312 AAAAAAATTT
1 AAAAAAATTC
69875322 AAAAAA
1 AAAAAA
69875328 TTTAAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:69875383 original size:42 final size:42
Alignment explanation
Indices: 69875303--69875392 Score: 94
Period size: 42 Copynumber: 2.1 Consensus size: 42
69875293 AAAAATTACA
* *
69875303 AAAAAATTCAAAAAAATTTAAAAAATTTAAAATTTATATTTCT
1 AAAAAATTCAAAAAAATTTAAAAAATTTAAAA-TTATATATAT
* * *
69875346 AAAAAATT-ATAAAATTATTAAAAAATTCTAACA-TATATATAT
1 AAAAAATTCAAAAAAAT-TTAAAAAATT-TAAAATTATATATAT
69875388 AAAAA
1 AAAAA
69875393 GTTAAAATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
42 18 0.45
43 18 0.45
44 4 0.10
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.34
Consensus pattern (42 bp):
AAAAAATTCAAAAAAATTTAAAAAATTTAAAATTATATATAT
Found at i:69875385 original size:44 final size:43
Alignment explanation
Indices: 69875303--69875385 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
69875293 AAAAATTACA
*
69875303 AAAAAATTCAAAAAAATTTAAAAAATTTAAAATTTATATTTCT
1 AAAAAATTCAAAAAAATTTAAAAAATTTAAAATATATATTTCT
* * *
69875346 AAAAAATT-ATAAAATTATTAAAAAATTCTAACATATATAT
1 AAAAAATTCAAAAAAAT-TTAAAAAATT-TAAAATATATAT
69875386 ATAAAAAGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 6 0.18
43 18 0.53
44 10 0.29
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (43 bp):
AAAAAATTCAAAAAAATTTAAAAAATTTAAAATATATATTTCT
Found at i:69875999 original size:13 final size:15
Alignment explanation
Indices: 69875973--69876005 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
69875963 TAAAATGAAA
69875973 ATAAATTGAAA-TTT
1 ATAAATTGAAATTTT
69875987 ATAAATT-AAATTTT
1 ATAAATTGAAATTTT
69876001 ATAAA
1 ATAAA
69876006 AAAAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 3 0.17
14 15 0.83
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
ATAAATTGAAATTTT
Found at i:69877266 original size:22 final size:22
Alignment explanation
Indices: 69877238--69877279 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
69877228 CACAGTGGGC
*
69877238 ATTCTTCTTATGCTTTTTATGG
1 ATTCTTCTTATCCTTTTTATGG
*
69877260 ATTCTTCTTCTCCTTTTTAT
1 ATTCTTCTTATCCTTTTTAT
69877280 TTCCCCGTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.12, C:0.19, G:0.07, T:0.62
Consensus pattern (22 bp):
ATTCTTCTTATCCTTTTTATGG
Found at i:69881124 original size:7 final size:7
Alignment explanation
Indices: 69881112--69881137 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
69881102 ATACAAATTC
69881112 AAAAGTT
1 AAAAGTT
69881119 AAAAGTT
1 AAAAGTT
69881126 AAAAGTT
1 AAAAGTT
69881133 AAAAG
1 AAAAG
69881138 AAATAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23
Consensus pattern (7 bp):
AAAAGTT
Found at i:69881864 original size:9 final size:9
Alignment explanation
Indices: 69881852--69881883 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
69881842 ATAATTCGGT
69881852 TAATTTGGG
1 TAATTTGGG
*
69881861 TAATTCGGG
1 TAATTTGGG
69881870 TAATTTGGG
1 TAATTTGGG
69881879 TAATT
1 TAATT
69881884 CGATTAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.25, C:0.03, G:0.28, T:0.44
Consensus pattern (9 bp):
TAATTTGGG
Found at i:69881866 original size:18 final size:18
Alignment explanation
Indices: 69881843--69881911 Score: 84
Period size: 18 Copynumber: 3.8 Consensus size: 18
69881833 TTTATACAAA
*
69881843 TAATTCGGTTAATTTGGG
1 TAATTCGATTAATTTGGG
**
69881861 TAATTCGGGTAATTTGGG
1 TAATTCGATTAATTTGGG
** *
69881879 TAATTCGATTAATTCAGT
1 TAATTCGATTAATTTGGG
69881897 TAATTCGATTAATTT
1 TAATTCGATTAATTT
69881912 TATACTTATT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (18 bp):
TAATTCGATTAATTTGGG
Found at i:69882127 original size:15 final size:16
Alignment explanation
Indices: 69882107--69882136 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69882097 GAATATAGTA
69882107 AAATA-TTAAAAAAAT
1 AAATATTTAAAAAAAT
69882122 AAATATTTAAAAAAA
1 AAATATTTAAAAAAA
69882137 AAGAGACACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAATATTTAAAAAAAT
Found at i:69889001 original size:43 final size:43
Alignment explanation
Indices: 69888940--69889023 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
69888930 TAATTAAGCA
* *
69888940 ATCCGACCTCGTTGAGTGGTCTGAGTTCATTATGGATGCGAGC
1 ATCCGACCTCATTGAGTGGTCCGAGTTCATTATGGATGCGAGC
* *
69888983 ATCCGAGCTCATTGAGTGGTCCGAGTTCATTGTGGATGCGA
1 ATCCGACCTCATTGAGTGGTCCGAGTTCATTATGGATGCGA
69889024 TGCCTGTGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (43 bp):
ATCCGACCTCATTGAGTGGTCCGAGTTCATTATGGATGCGAGC
Found at i:69889507 original size:32 final size:32
Alignment explanation
Indices: 69889470--69889566 Score: 194
Period size: 32 Copynumber: 3.0 Consensus size: 32
69889460 GGGATCCATG
69889470 AAATGATGAGTCCATGATCAATGTGACAATGA
1 AAATGATGAGTCCATGATCAATGTGACAATGA
69889502 AAATGATGAGTCCATGATCAATGTGACAATGA
1 AAATGATGAGTCCATGATCAATGTGACAATGA
69889534 AAATGATGAGTCCATGATCAATGTGACAATGA
1 AAATGATGAGTCCATGATCAATGTGACAATGA
69889566 A
1 A
69889567 CTTATGTTAG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 65 1.00
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (32 bp):
AAATGATGAGTCCATGATCAATGTGACAATGA
Found at i:69899160 original size:43 final size:43
Alignment explanation
Indices: 69899099--69899254 Score: 172
Period size: 43 Copynumber: 3.6 Consensus size: 43
69899089 GATTAACGAG
* *
69899099 ATGTGATTATGTGTAAGACCATGTATGGGACATTGGCATCATT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATT
* * *
69899142 ATGTGATTACGTGTAAGACTATGTCTAGGACATTGGCATCGTT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATT
* * * *
69899185 ATTTGATTTCGTGTAAGACCATAG-CTGGG-CTATCGGCATCAAT
1 ATGTGATTACGTGTAAGACCAT-GTCTGGGAC-ATTGGCATCATT
* * *
69899228 ATGTGATAACATGTAAGACCATATCTG
1 ATGTGATTACGTGTAAGACCATGTCTG
69899255 AGATATGGCA
Statistics
Matches: 93, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 1 0.01
43 91 0.98
44 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATT
Found at i:69904532 original size:40 final size:40
Alignment explanation
Indices: 69904441--69904661 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
69904431 TTCGAATGGT
* * * *
69904441 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
69904482 ATCCGAGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
69904522 ATCTGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
69904562 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
69904602 AACCGGGTTAAGTCCCGAGGGCATTTGTGCGAATTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
69904643 A-CCGGGCTT-TGTCCCGAAG
1 ATCCGGG-TTAAGTCCCGAAG
69904662 ACAATCGAGC
Statistics
Matches: 159, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
40 129 0.81
41 30 0.19
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:69904674 original size:120 final size:120
Alignment explanation
Indices: 69904441--69904701 Score: 271
Period size: 120 Copynumber: 2.2 Consensus size: 120
69904431 TTCGAATGGT
* * * * * *
69904441 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGAGTTAAGTCCCGAAGGTAT
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGAGTTAAGTCCCGAAGGCAT
* * * * * * *
69904506 TTGTGCGAGTTACTAAATCTGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
66 TTGTGCGAATTACTAAATCCGGGTT-ATTCCCGAAGACAATCGAGCGAGTCACTAA
* * * *
69904562 ATCCGGGTTAATTCCCGAAGGCATTTGTGC-GAGTTACCAAAACCGGGTTAAGTCCCGAGGGCAT
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGAGTTAAGTCCCGAAGGCAT
* *
69904626 TTGTGCGAATTACTATAA-CCGGGCTT-TGTCCCGAAGACAATCGAGCGAGTCGCTAT
66 TTGTGCGAATTACTA-AATCCGGG-TTAT-TCCCGAAGACAATCGAGCGAGTCACTAA
69904682 ATCC-GGTTAAATT-CCGAAGG
1 ATCCGGGTT-AATTCCCGAAGG
69904702 TACGTGATTC
Statistics
Matches: 117, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
119 12 0.10
120 74 0.63
121 31 0.26
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (120 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGAGTTAAGTCCCGAAGGCAT
TTGTGCGAATTACTAAATCCGGGTTATTCCCGAAGACAATCGAGCGAGTCACTAA
Found at i:69910039 original size:43 final size:42
Alignment explanation
Indices: 69909978--69910128 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 42
69909968 GATTAACGAG
*
69909978 ATGTGATTATGTGTAAGACCATGTATGGGACATTGGCATCATT
1 ATGTGATTACGTGTAAGACCATGTAT-GGACATTGGCATCATT
* * *
69910021 ATGTGATTACGTGTAAGACTATGTCTAGGACATTGGCATCGTT
1 ATGTGATTACGTGTAAGACCATGTAT-GGACATTGGCATCATT
* * * *
69910064 ATTTGATTTCGTGTAAGACCATAGCTA-GG-CTATCGGCATCAAT
1 ATGTGATTACGTGTAAGACCAT-G-TATGGAC-ATTGGCATCATT
* *
69910107 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACGTGTAAGACCAT
69910129 ATCTGAGATA
Statistics
Matches: 89, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
42 1 0.01
43 86 0.97
44 1 0.01
45 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (42 bp):
ATGTGATTACGTGTAAGACCATGTATGGACATTGGCATCATT
Found at i:69915470 original size:20 final size:20
Alignment explanation
Indices: 69915445--69915482 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69915435 CTGTATAGCA
* *
69915445 AAAAATTTTTGAAGTTCTGT
1 AAAAATTTATAAAGTTCTGT
69915465 AAAAATTTATAAAGTTCT
1 AAAAATTTATAAAGTTCT
69915483 CGGCTTAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (20 bp):
AAAAATTTATAAAGTTCTGT
Found at i:69917896 original size:2 final size:2
Alignment explanation
Indices: 69917889--69917927 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
69917879 CAACCACTTA
69917889 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
69917928 AAGCTAGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:69920033 original size:57 final size:57
Alignment explanation
Indices: 69919943--69920061 Score: 211
Period size: 57 Copynumber: 2.1 Consensus size: 57
69919933 TCTATCTTAC
69919943 CTACAACATTCTAGCCTTCTTGAAATTACGTTGTTTCACAGATTCTTCTAACGAACT
1 CTACAACATTCTAGCCTTCTTGAAATTACGTTGTTTCACAGATTCTTCTAACGAACT
* * *
69920000 CTACAACATTCTCGCCTTCTTGAAATTATGTTGTTTCACATATTCTTCTAACGAACT
1 CTACAACATTCTAGCCTTCTTGAAATTACGTTGTTTCACAGATTCTTCTAACGAACT
69920057 CTACA
1 CTACA
69920062 TTCTCAATGA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.38
Consensus pattern (57 bp):
CTACAACATTCTAGCCTTCTTGAAATTACGTTGTTTCACAGATTCTTCTAACGAACT
Found at i:69921267 original size:21 final size:22
Alignment explanation
Indices: 69921213--69921268 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
69921203 AATTTAGCCA
* *
69921213 AAAATCTCTAAAATTTCTATTT
1 AAAATCTCTCAAATTTCTAATT
*
69921235 AAAAGCTCTCAAATTTCTAATT
1 AAAATCTCTCAAATTTCTAATT
*
69921257 -AAATTTCTCAAA
1 AAAATCTCTCAAA
69921269 GCTCTTTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 10 0.34
22 19 0.66
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (22 bp):
AAAATCTCTCAAATTTCTAATT
Found at i:69921538 original size:53 final size:53
Alignment explanation
Indices: 69921420--69921527 Score: 191
Period size: 53 Copynumber: 2.1 Consensus size: 53
69921410 TGGTAACGGT
* *
69921420 TTATTTTAAATGTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
1 TTATTTTAATTTTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
69921473 TTATTTTAATTTTTGAATATTATTTAATA-TTTTTTCATTTATGTAATTTTAA
1 TTATTTTAATTTTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
69921525 TTA
1 TTA
69921528 ATTTGTATTT
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
52 26 0.49
53 27 0.51
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (53 bp):
TTATTTTAATTTTTGAATATTATTTAATATTTTTTTCATTTATGTAATTTTAA
Found at i:69922408 original size:29 final size:29
Alignment explanation
Indices: 69922375--69922433 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
69922365 ATATATATAC
*
69922375 ATAAAATAGTCGTTTCATATTTAGTACTT
1 ATAAAATAGTCATTTCATATTTAGTACTT
*
69922404 ATAAAATAGTTATTTCATATTTAGTACTT
1 ATAAAATAGTCATTTCATATTTAGTACTT
69922433 A
1 A
69922434 GTATTTAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.46
Consensus pattern (29 bp):
ATAAAATAGTCATTTCATATTTAGTACTT
Found at i:69922434 original size:7 final size:7
Alignment explanation
Indices: 69922421--69922452 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
69922411 AGTTATTTCA
69922421 TATTTAG
1 TATTTAG
*
69922428 TACTTAG
1 TATTTAG
69922435 TATTTAG
1 TATTTAG
69922442 TATTTAG
1 TATTTAG
69922449 TATT
1 TATT
69922453 ATGTATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.28, C:0.03, G:0.12, T:0.56
Consensus pattern (7 bp):
TATTTAG
Found at i:69923037 original size:30 final size:30
Alignment explanation
Indices: 69922951--69923046 Score: 102
Period size: 30 Copynumber: 3.2 Consensus size: 30
69922941 TGATGGGACA
* ** *
69922951 GGCCCATCAACCGTGTCCACACAATCATCG
1 GGCCCATCAACAGTACCCACACAATCACCG
* * * * *
69922981 GGCCTATCAATAGCACCTACATAATCACCG
1 GGCCCATCAACAGTACCCACACAATCACCG
69923011 GGCCCATCAACAGTACCCACACAATCACCG
1 GGCCCATCAACAGTACCCACACAATCACCG
*
69923041 AGCCCA
1 GGCCCA
69923047 ATGCCTCAAT
Statistics
Matches: 51, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.31, C:0.40, G:0.15, T:0.15
Consensus pattern (30 bp):
GGCCCATCAACAGTACCCACACAATCACCG
Found at i:69926850 original size:125 final size:125
Alignment explanation
Indices: 69926628--69926871 Score: 400
Period size: 125 Copynumber: 2.0 Consensus size: 125
69926618 GGCCAAGCAT
* * *
69926628 GAACTACTGTAGAAAAAGAGCGTCTACATGGGAGCTTTTTTAGAAATTTTGCTGACAGTGCATCC
1 GAACTACTGTAGAAAAAGAGCGTCTACATGGGAGCTTTTTTAGAAATTTTGCTAACAATACATCC
*
69926693 TGCTTGAAACGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTCTTCAG
66 TGCTTGAAACGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTCTTCAG
*
69926753 GAACTACTGTAGAAAAA-AGCGTCTACGTGGGAGCTTTTTTCAGAAATTTTGCTAACAATACATC
1 GAACTACTGTAGAAAAAGAGCGTCTACATGGGAGCTTTTTT-AGAAATTTTGCTAACAATACATC
** *
69926817 CTGCTTGAAGTGTTTTTGATACTATTTGTTCAGAAACATCTTCTCAAAATTATTT
65 CTGCTTGAAACGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTT
69926872 TCTTTAGGGT
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
124 22 0.20
125 88 0.80
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (125 bp):
GAACTACTGTAGAAAAAGAGCGTCTACATGGGAGCTTTTTTAGAAATTTTGCTAACAATACATCC
TGCTTGAAACGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTCTTCAG
Found at i:69926998 original size:30 final size:28
Alignment explanation
Indices: 69926924--69927041 Score: 76
Period size: 34 Copynumber: 3.9 Consensus size: 28
69926914 CAATGTTGTT
*
69926924 TTAATTTAATTAATTT-TAACCCTAAACC
1 TTAATTT-ATTAATTTAAAACCCTAAACC
* * *
69926952 CTAATTTTATTTATTTAAAATCCTAGAACC
1 TTAA-TTTATTAATTTAAAACCCTA-AACC
69926982 TTAATTTAGTTAATTTACCTAAAACCCATAAACC
1 TTAATTTA-TTAA-TT---TAAAACCC-TAAACC
* * *
69927016 CTAGTTTAATTTATTTAAAACCCTAA
1 TTAATTT-ATTAATTTAAAACCCTAA
69927042 TTTTATTTAT
Statistics
Matches: 70, Mismatches: 10, Indels: 19
0.71 0.10 0.19
Matches are distributed among these distances:
28 10 0.14
29 16 0.23
30 18 0.26
31 2 0.03
33 2 0.03
34 19 0.27
35 3 0.04
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.41
Consensus pattern (28 bp):
TTAATTTATTAATTTAAAACCCTAAACC
Found at i:69927036 original size:22 final size:22
Alignment explanation
Indices: 69927011--69927063 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
69927001 TAAAACCCAT
* *
69927011 AAACCCTAGTTTAATTTATTTA
1 AAACCCTAATTTAATTTATTAA
*
69927033 AAACCCTAATTTTATTTATTAA
1 AAACCCTAATTTAATTTATTAA
69927055 AAACCCTAA
1 AAACCCTAA
69927064 AACTCTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.40
Consensus pattern (22 bp):
AAACCCTAATTTAATTTATTAA
Found at i:69927099 original size:86 final size:86
Alignment explanation
Indices: 69926947--69927110 Score: 204
Period size: 86 Copynumber: 1.9 Consensus size: 86
69926937 TTTTAACCCT
* * * * * *
69926947 AAACCCTAATTTTATTTATTTAAAATCCTAGAACCTTAATTTAGTTAATTTACCTAAAACCCATA
1 AAACCCTAATTTTATTTATTAAAAACCCTAAAACCTTAATTTACTTAATTCACCTAAAAACCATA
*
69927012 AACCCTAGTTTAATTTATTTA
66 AACCCTAATTTAATTTATTTA
** **
69927033 AAACCCTAATTTTATTTATTAAAAACCCTAAAA-CTCTAATTTACTTAATTCATTTAAAAATTAT
1 AAACCCTAATTTTATTTATTAAAAACCCTAAAACCT-TAATTTACTTAATTCACCTAAAAACCAT
*
69927097 AAATCCTAATTTAA
65 AAACCCTAATTTAA
69927111 ATAATTTTTG
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
85 2 0.03
86 63 0.97
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.40
Consensus pattern (86 bp):
AAACCCTAATTTTATTTATTAAAAACCCTAAAACCTTAATTTACTTAATTCACCTAAAAACCATA
AACCCTAATTTAATTTATTTA
Found at i:69928036 original size:16 final size:16
Alignment explanation
Indices: 69928014--69928047 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
69928004 ATTTTGACCA
69928014 ATTTTTTTAAT-ATTT
1 ATTTTTTTAATAATTT
69928029 ATTTTTTTAATAATTT
1 ATTTTTTTAATAATTT
69928045 ATT
1 ATT
69928048 ATACATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTTTTTAATAATTT
Found at i:69928583 original size:18 final size:18
Alignment explanation
Indices: 69928562--69928599 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
69928552 AAATAAATGA
69928562 AAAAGTAAATAGTTTCAT
1 AAAAGTAAATAGTTTCAT
*
69928580 AAAAGTAATTAGTTTCAT
1 AAAAGTAAATAGTTTCAT
69928598 AA
1 AA
69928600 TTTTCATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.05, G:0.11, T:0.34
Consensus pattern (18 bp):
AAAAGTAAATAGTTTCAT
Found at i:69929112 original size:14 final size:15
Alignment explanation
Indices: 69929085--69929115 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
69929075 GAAAGACTAA
69929085 AATGATATTTTTTAT
1 AATGATATTTTTTAT
69929100 AATGATA-TTTTTAT
1 AATGATATTTTTTAT
69929114 AA
1 AA
69929116 AGGTGGAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (15 bp):
AATGATATTTTTTAT
Found at i:69932357 original size:20 final size:20
Alignment explanation
Indices: 69932320--69932374 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
69932310 ATTTATCATT
*
69932320 ATTATTATTCTATCAAATTATA
1 ATTATTA-T-TATTAAATTATA
*
69932342 ATT-TATATTATTAAATTATG
1 ATTAT-TATTATTAAATTATA
69932362 ATTATTATTATTA
1 ATTATTATTATTA
69932375 TTAAAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 21 0.72
21 3 0.10
22 5 0.17
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.55
Consensus pattern (20 bp):
ATTATTATTATTAAATTATA
Found at i:69932673 original size:13 final size:14
Alignment explanation
Indices: 69932655--69932701 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
69932645 TTATTAAGTT
69932655 AATAAAATAAAAG-
1 AATAAAATAAAAGA
* *
69932668 AATAAAAGAAATGA
1 AATAAAATAAAAGA
69932682 AATAAAAT-AAAGA
1 AATAAAATAAAAGA
*
69932695 AACAAAA
1 AATAAAA
69932702 CAAAGTAAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
13 21 0.75
14 7 0.25
ACGTcount: A:0.77, C:0.02, G:0.09, T:0.13
Consensus pattern (14 bp):
AATAAAATAAAAGA
Found at i:69933545 original size:40 final size:39
Alignment explanation
Indices: 69933460--69933568 Score: 105
Period size: 40 Copynumber: 2.8 Consensus size: 39
69933450 AATTGAGACT
* * *
69933460 GATACTGAACTGAATTATGGAA-TACTGAATATTGTTTG
1 GATACTGAAGTGAACTATGAAATTACTGAATATTGTTTG
* * * *
69933498 GAATACTGAATTGAATTGTGAAGTTACTGAATATTGTTATG
1 G-ATACTGAAGTGAACTATGAAATTACTGAATATTGTT-TG
*
69933539 TG-TACTGCAGTGAACTATGAAATTACTGAA
1 -GATACTGAAGTGAACTATGAAATTACTGAA
69933569 GTAATGAATT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
38 1 0.02
39 17 0.29
40 37 0.64
41 2 0.03
42 1 0.02
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (39 bp):
GATACTGAAGTGAACTATGAAATTACTGAATATTGTTTG
Found at i:69933832 original size:45 final size:45
Alignment explanation
Indices: 69933768--69933879 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
69933758 ATGTGCCGAC
*
69933768 TACTGTTACTGTTACTGTTACTGATTC-GACACTTTGTATGTTGAA
1 TACTGTTACTGTTACTGTTACTGATTCAGA-ACTTCGTATGTTGAA
* * * * *
69933813 TACTGTTGCCGTTATTGTTACAGATTCAGAACTTCGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACTGATTCAGAACTTCGTATGTTGAA
*
69933858 TACTATTACTGTTACTGTTACT
1 TACTGTTACTGTTACTGTTACT
69933880 ACTACCGTTA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 53 0.96
46 2 0.04
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACTGATTCAGAACTTCGTATGTTGAA
Found at i:69933889 original size:18 final size:19
Alignment explanation
Indices: 69933858--69933898 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
69933848 GTGTGTTGAA
* *
69933858 TACTATTACTGTTACTG-T
1 TACTACTACCGTTACTGAT
69933876 TACTACTACCGTTACTGAT
1 TACTACTACCGTTACTGAT
69933895 TACT
1 TACT
69933899 GTTTAGGTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (19 bp):
TACTACTACCGTTACTGAT
Found at i:69933934 original size:18 final size:18
Alignment explanation
Indices: 69933911--69933945 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
69933901 TTAGGTACTG
69933911 TGTACCGTTAAGGCACAA
1 TGTACCGTTAAGGCACAA
69933929 TGTACCGTTAAGGCACA
1 TGTACCGTTAAGGCACA
69933946 GTATACCGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (18 bp):
TGTACCGTTAAGGCACAA
Found at i:69933952 original size:18 final size:18
Alignment explanation
Indices: 69933913--69933954 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
69933903 AGGTACTGTG
*
69933913 TACCGTTAAGGCACAATG
1 TACCGTTAAGGCACAATA
*
69933931 TACCGTTAAGGCACAGTA
1 TACCGTTAAGGCACAATA
69933949 TACCGT
1 TACCGT
69933955 ACTGGTGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (18 bp):
TACCGTTAAGGCACAATA
Found at i:69939195 original size:23 final size:23
Alignment explanation
Indices: 69939162--69939205 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
69939152 TTTGAAGGGA
*
69939162 TGAGGGTTAACCCTAACACAAAT
1 TGAGGGGTAACCCTAACACAAAT
*
69939185 TGAGGGGTAACCCTGACACAA
1 TGAGGGGTAACCCTAACACAA
69939206 CTTACCCGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (23 bp):
TGAGGGGTAACCCTAACACAAAT
Found at i:69947479 original size:9 final size:9
Alignment explanation
Indices: 69947436--69947465 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
69947426 ATTTTTAATT
69947436 TTAAAAAAA
1 TTAAAAAAA
69947445 TTAAAAAAA
1 TTAAAAAAA
69947454 TTAAAAAAA
1 TTAAAAAAA
69947463 TTA
1 TTA
69947466 TTTAAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (9 bp):
TTAAAAAAA
Found at i:69947584 original size:250 final size:241
Alignment explanation
Indices: 69947152--69947642 Score: 838
Period size: 250 Copynumber: 2.0 Consensus size: 241
69947142 TTTATTACAT
69947152 TTGATGATGGACGCCACGTTAGCAAATTAATTAATTTTTAATTTTAAAAAAATTTAAAAAATTAT
1 TTGATGATGGACGCCACGTTAGCAAATTAATTAATTTTTAATTTTAAAAAAATTTAAAAAATTAT
* *
69947217 TTTAAAAACTTAATAAGTATTAAAGAAGTAAAAAAAAATTATATATTTCTTCAGATTTTTTAAAA
66 TTAAAAAACTTAATAAGTATTAAAGAAGTAAAAAAAAAATATATATTTCTTCAGATTTTTTAAAA
69947282 AATAATTAATTGCTTATGTGGTATACATGTAGATGTCCACATGGATGCCACATCAGTAAAGTTAA
131 AATAATTAATTGCTTATGTGGTATACATGTAGATGTCCACATGGATGCCACATCAGTAAAGTTAA
*
69947347 TAGACATTAATTTTTTTTTATCAATTTTGGTGTGATTTGACAAATA
196 TAGACATTAACTTTTTTTTATCAATTTTGGTGTGATTTGACAAATA
* *
69947393 TTGATGATGGATGCCATGTTAGCAAATTAATTAATTTTTAATTTTAAAAAAATTAAAAAAATTAA
1 TTGATGATGGACGCCACGTTAGCAAATTAATTAATTTTTAATTTTAAAAAAA-T-------TT-A
69947458 AAAAATTATTTAAAAAACTTAATAAGTATTAAAGAAGTAAAAAAAAAATATATATTTCTTCAGAT
57 AAAAATTATTTAAAAAACTTAATAAGTATTAAAGAAGTAAAAAAAAAATATATATTTCTTCAGAT
* *
69947523 TTTTTAAAAAATAATTAATTGCTTATGTGGTATACATGTGGGTGTCCACATGGATGCCACATCAG
122 TTTTTAAAAAATAATTAATTGCTTATGTGGTATACATGTAGATGTCCACATGGATGCCACATCAG
69947588 TAAAGTTAATAGACATTAACTTTTTTTTATCAATTTTGGTGTGATTTGACAAATA
187 TAAAGTTAATAGACATTAACTTTTTTTTATCAATTTTGGTGTGATTTGACAAATA
69947643 ATGCAAGTTT
Statistics
Matches: 234, Mismatches: 7, Indels: 9
0.94 0.03 0.04
Matches are distributed among these distances:
241 50 0.21
242 1 0.00
249 2 0.01
250 181 0.77
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (241 bp):
TTGATGATGGACGCCACGTTAGCAAATTAATTAATTTTTAATTTTAAAAAAATTTAAAAAATTAT
TTAAAAAACTTAATAAGTATTAAAGAAGTAAAAAAAAAATATATATTTCTTCAGATTTTTTAAAA
AATAATTAATTGCTTATGTGGTATACATGTAGATGTCCACATGGATGCCACATCAGTAAAGTTAA
TAGACATTAACTTTTTTTTATCAATTTTGGTGTGATTTGACAAATA
Found at i:69948172 original size:23 final size:24
Alignment explanation
Indices: 69948116--69948183 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 24
69948106 ACATATAATT
*
69948116 AAATATAAATTATATATTATGAAA
1 AAATATAAAATATATATTATGAAA
* *
69948140 AAGTACAAAATATAT-TTAT-ATAA
1 AAATATAAAATATATATTATGA-AA
* *
69948163 AAATATAAAAAAAATATTATG
1 AAATATAAAATATATATTATG
69948184 TTTTTATATT
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
22 1 0.03
23 17 0.50
24 16 0.47
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (24 bp):
AAATATAAAATATATATTATGAAA
Found at i:69948438 original size:31 final size:32
Alignment explanation
Indices: 69948401--69948470 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
69948391 TCTTTTTTTT
*
69948401 TTATAAAAA-AATTTAAAATTT-TAAAAGAAA
1 TTATAAAAATAATATAAAATTTCTAAAAGAAA
* *
69948431 TATATAAAAATTATATAAATTTTCTAAAAGAAA
1 T-TATAAAAATAATATAAAATTTCTAAAAGAAA
69948464 TTATAAA
1 TTATAAA
69948471 TTACAAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 1 0.03
31 8 0.24
32 15 0.44
33 10 0.29
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (32 bp):
TTATAAAAATAATATAAAATTTCTAAAAGAAA
Found at i:69961183 original size:99 final size:98
Alignment explanation
Indices: 69960998--69961264 Score: 270
Period size: 99 Copynumber: 2.8 Consensus size: 98
69960988 TTAAGTTATC
* * *
69960998 GATGCCATGTCCCAGACATGGTCTTACACTGGCTGTCCTAATCGAGGCCGATGCCATTTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTGTCCT-ATCGAGGCAGATGCCATGTCCCAGA
69961063 CATGGTCTTACACTAGCTCTCGTACTTACGTGCT
65 CATGGTCTTACACTAGCTCTCGTACTTACGTGCT
*
69961097 GATGCCATGTCCCAGACATGGTCTTACATTGACATG-CCT-T-GTA-GCAGATG-CATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC-TGTCCTATCG-AGGCAGATGCCATGTCCCAG
* *
69961157 ACAT-GTCTTACACTGGCT-TACGT-CTCGACGT--T
64 ACATGGTCTTACACTAGCTCT-CGTACT-TACGTGCT
* ** * * * ** *
69961189 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCGTCTCAATTCCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTGTCCTATCGAGGCAGATGCCATGTCCCAGAC
69961252 ATGGTCTTACACT
66 ATGGTCTTACACT
69961265 GGCACACAAA
Statistics
Matches: 144, Mismatches: 14, Indels: 25
0.79 0.08 0.14
Matches are distributed among these distances:
90 13 0.09
91 16 0.11
92 10 0.07
93 17 0.12
94 30 0.21
95 13 0.09
96 7 0.05
97 2 0.01
99 34 0.24
100 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (98 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTGTCCTATCGAGGCAGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTCGTACTTACGTGCT
Found at i:69961203 original size:46 final size:45
Alignment explanation
Indices: 69961143--69961269 Score: 168
Period size: 46 Copynumber: 2.7 Consensus size: 45
69961133 CCTTGTAGCA
* *
69961143 GATGCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCGACGTT-
1 GATGCATGTCCCAGACATGTCTTACACTGGCACT-CGTCTC-A-ATTC
69961189 GATGCATGTCCCAGACATGTCTTACACTGGCACTCGTCTCAATTCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCGTCTCAATT-C
69961235 GATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCAC
69961270 ACAAATTACC
Statistics
Matches: 74, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
44 2 0.03
45 1 0.01
46 41 0.55
47 15 0.20
48 15 0.20
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCGTCTCAATTC
Found at i:69961594 original size:30 final size:30
Alignment explanation
Indices: 69961558--69961629 Score: 144
Period size: 30 Copynumber: 2.4 Consensus size: 30
69961548 CAAAGTGCAC
69961558 TCATTTTGCCCCCAAACCTTGGCAGAATGA
1 TCATTTTGCCCCCAAACCTTGGCAGAATGA
69961588 TCATTTTGCCCCCAAACCTTGGCAGAATGA
1 TCATTTTGCCCCCAAACCTTGGCAGAATGA
69961618 TCATTTTGCCCC
1 TCATTTTGCCCC
69961630 TATTCTCGAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (30 bp):
TCATTTTGCCCCCAAACCTTGGCAGAATGA
Found at i:69978201 original size:46 final size:46
Alignment explanation
Indices: 69978104--69978270 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 46
69978094 ATGTTGATGC
* * * * *
69978104 CATGTCCCAGACATGGTCTTACATTGAC-ATGTCTCGTGGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCAATGTCTCGAGGCCGATA
*
69978149 CATGTCCCAGACAT-GTCTTACACTGGCTAATGTCTTGAGGCCGATA
1 CATGTCCCAGACATGGTCTTACACTGGC-AATGTCTCGAGGCCGATA
* * * *
69978195 CATGTCCCGGACAT-GTCTTACACTGG-AACTTGTCTCAATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCAA--TGTCTCGAGGCCGAT-A
*
69978242 CATGTCCTAGACATGGTCTTACACTGGCA
1 CATGTCCCAGACATGGTCTTACACTGGCA
69978271 CACAAATTAC
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
44 13 0.13
45 14 0.14
46 50 0.49
47 12 0.12
48 12 0.12
49 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCAATGTCTCGAGGCCGATA
Found at i:69978254 original size:138 final size:143
Alignment explanation
Indices: 69977999--69978264 Score: 355
Period size: 138 Copynumber: 1.9 Consensus size: 143
69977989 GTTAAGTTAC
* * *
69977999 CGATGCCATGTCCCAGACATAGTCTTACATTGGCTATCCTTATTGAGGCCGATGCCATGTCCCGG
1 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTAT-CGTATTGAGGCCGATGACATGTCCCGG
** * **
69978064 ACATGGTCTTACACTAGCTCTTGCGTATCCATGTTGATGCCATGTCCCAGACATGGTCTTACATT
65 ACATGGTCTTACACTAGAACTT-CGTATCAATGCCGATGCCATGTCCCAGACATGGTCTTACATT
69978129 GACATGTCTCGTGGT
129 GACATGTCTCGTGGT
*
69978144 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTAAT-GTCTTGAGGCCGAT-ACATGTCCCGG
1 CGATGCCATGTCCCAGACATAGTCTTACACTGGCT-ATCGTATTGAGGCCGATGACATGTCCCGG
* * *
69978205 ACAT-GTCTTACACTGGAACTT-GTCTCAATGCCGATGCCATGTCCTAGACATGGTCTTACA
65 ACATGGTCTTACACTAGAACTTCGTATCAATGCCGATGCCATGTCCCAGACATGGTCTTACA
69978265 CTGGCACACA
Statistics
Matches: 108, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
138 34 0.31
140 14 0.13
141 14 0.13
142 12 0.11
143 13 0.12
144 16 0.15
145 5 0.05
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (143 bp):
CGATGCCATGTCCCAGACATAGTCTTACACTGGCTATCGTATTGAGGCCGATGACATGTCCCGGA
CATGGTCTTACACTAGAACTTCGTATCAATGCCGATGCCATGTCCCAGACATGGTCTTACATTGA
CATGTCTCGTGGT
Found at i:69979002 original size:12 final size:12
Alignment explanation
Indices: 69978985--69979009 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69978975 CAAAAATGTA
69978985 AAAATCATCAAG
1 AAAATCATCAAG
69978997 AAAATCATCAAG
1 AAAATCATCAAG
69979009 A
1 A
69979010 TCACTTAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:69981218 original size:50 final size:49
Alignment explanation
Indices: 69981143--69981292 Score: 230
Period size: 50 Copynumber: 3.0 Consensus size: 49
69981133 GTGCCATTCT
*
69981143 ATACGGGGCAATAGAAATAGGCATTATTCCTGGTGCTAACTCAATACCAA
1 ATACGAGGCAATAGAAATAGGCATTATTCC-GGTGCTAACTCAATACCAA
*
69981193 ATACGAGGCAATAGAAATAGGCATTATTCCCGTGCTAACTCAATACCAA
1 ATACGAGGCAATAGAAATAGGCATTATTCCGGTGCTAACTCAATACCAA
* *
69981242 ATAC-AGGGCAATAGAAATAGGCATTGTTCCCGGTGCTAACTTAATACCAA
1 ATACGA-GGCAATAGAAATAGGCATTATT-CCGGTGCTAACTCAATACCAA
69981292 A
1 A
69981293 CTCTACCTCT
Statistics
Matches: 93, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
48 1 0.01
49 43 0.46
50 49 0.53
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (49 bp):
ATACGAGGCAATAGAAATAGGCATTATTCCGGTGCTAACTCAATACCAA
Found at i:69981252 original size:49 final size:48
Alignment explanation
Indices: 69981143--69981292 Score: 228
Period size: 49 Copynumber: 3.0 Consensus size: 48
69981133 GTGCCATTCT
*
69981143 ATACGGGGCAATAGAAATAGGCATTATTCCTGGTGCTAACTCAATACCAA
1 ATAC-GGGCAATAGAAATAGGCATTATTCC-CGTGCTAACTCAATACCAA
69981193 ATACGAGGCAATAGAAATAGGCATTATTCCCGTGCTAACTCAATACCAA
1 ATACG-GGCAATAGAAATAGGCATTATTCCCGTGCTAACTCAATACCAA
* *
69981242 ATACAGGGCAATAGAAATAGGCATTGTTCCCGGTGCTAACTTAATACCAA
1 ATAC-GGGCAATAGAAATAGGCATTATTCCC-GTGCTAACTCAATACCAA
69981292 A
1 A
69981293 CTCTACCTCT
Statistics
Matches: 94, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
49 47 0.50
50 47 0.50
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (48 bp):
ATACGGGCAATAGAAATAGGCATTATTCCCGTGCTAACTCAATACCAA
Found at i:69984868 original size:21 final size:21
Alignment explanation
Indices: 69984844--69984886 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
69984834 CACTATAGGA
*
69984844 TCACCCGTCCAGGCTATATCC
1 TCACCCGTCCAGGCTAGATCC
69984865 TCACCCGTCCAGGCTAGATCC
1 TCACCCGTCCAGGCTAGATCC
69984886 T
1 T
69984887 TTTCGCCGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.42, G:0.16, T:0.23
Consensus pattern (21 bp):
TCACCCGTCCAGGCTAGATCC
Found at i:69987622 original size:40 final size:40
Alignment explanation
Indices: 69987577--69987744 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
69987567 CGGAATATAA
69987577 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
69987617 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** *
69987657 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTCA-C
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTT-AGC
** * * * *
69987697 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
69987737 CCGGATAT
1 CCGGATAT
69987745 CATTCAATTT
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 2 0.02
40 99 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69987727 original size:80 final size:80
Alignment explanation
Indices: 69987593--69987742 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 80
69987583 ATAATCACGT
69987593 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
69987657 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
69987673 GCACAATTGCCTTCGGGTCTTCA-CCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTA
1 GCACAAATGCCTTCGGGTCTT-AGCCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTA
69987735 GCCCGGAT
63 GCCCGGAT
69987743 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
79 3 0.05
80 56 0.92
81 2 0.03
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:69992140 original size:25 final size:23
Alignment explanation
Indices: 69992099--69992144 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
69992089 CAATTTTAAA
69992099 TTTTATTAAAAAATATTTTCATT
1 TTTTATTAAAAAATATTTTCATT
*
69992122 TTTTATATCAAAATATATTTTCA
1 TTTTAT-T-AAAAAATATTTTCA
69992145 AATAAAGCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 1 0.05
25 13 0.65
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (23 bp):
TTTTATTAAAAAATATTTTCATT
Found at i:69992266 original size:12 final size:12
Alignment explanation
Indices: 69992249--69992274 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69992239 TAAGGCCAAA
69992249 ATAAAAATTGAC
1 ATAAAAATTGAC
69992261 ATAAAAATTGAC
1 ATAAAAATTGAC
69992273 AT
1 AT
69992275 TCATTTTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.27
Consensus pattern (12 bp):
ATAAAAATTGAC
Found at i:69994208 original size:20 final size:20
Alignment explanation
Indices: 69994170--69994208 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
69994160 ACTCATGGTA
*
69994170 TCGATAATTTTTTACAAGTG
1 TCGATAATTTTTTAAAAGTG
69994190 TCGAT-ATTTTTATAAAAGT
1 TCGATAATTTTT-TAAAAGT
69994209 AACAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.33, C:0.08, G:0.13, T:0.46
Consensus pattern (20 bp):
TCGATAATTTTTTAAAAGTG
Found at i:70001194 original size:23 final size:23
Alignment explanation
Indices: 70001167--70001213 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
70001157 GACTTTTTAG
70001167 AAAGAATTGTGAAAATATAACCT
1 AAAGAATTGTGAAAATATAACCT
70001190 AAAGAATTGTGAAAATATAACCT
1 AAAGAATTGTGAAAATATAACCT
70001213 A
1 A
70001214 TCCCAACTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.53, C:0.09, G:0.13, T:0.26
Consensus pattern (23 bp):
AAAGAATTGTGAAAATATAACCT
Found at i:70005672 original size:73 final size:74
Alignment explanation
Indices: 70005570--70005708 Score: 210
Period size: 73 Copynumber: 1.9 Consensus size: 74
70005560 CCAAACGAAT
* * * *
70005570 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTC-CCGTCGTTTAACAGATTTTATT-CAATT
1 ATTAAAAGTAAATAAAATCCGTTTCGGGATTTATTCTCC-CCGTTCAACAGATTTTATTCCAATT
70005633 TTTTTTTCAA
65 TTTTTTTCAA
*
70005643 ATTAAAAGTAAATAAAATCCGTTTTGGGATTTATTCTCCCCGTTCAACAGATTTTATTCCAATTT
1 ATTAAAAGTAAATAAAATCCGTTTCGGGATTTATTCTCCCCGTTCAACAGATTTTATTCCAATTT
70005708 T
66 T
70005709 GATTTTATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
73 50 0.85
74 9 0.15
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (74 bp):
ATTAAAAGTAAATAAAATCCGTTTCGGGATTTATTCTCCCCGTTCAACAGATTTTATTCCAATTT
TTTTTTCAA
Found at i:70005774 original size:88 final size:87
Alignment explanation
Indices: 70005652--70006486 Score: 789
Period size: 88 Copynumber: 9.6 Consensus size: 87
70005642 AATTAAAAGT
* * *
70005652 AAATAAAATCCGTTTTGGGATTTATTCTCCCCGTTCAACAGATTTTATTCCAATTTTGATTTTAT
1 AAATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAACAGATTTTATTCCAATTTTGATTTTAT
70005717 TTCCAAAATGAGTATTAAAATTA
66 TTCCAAAATGAGTATT-AAATTA
* * * ** * *
70005740 AAATAAAATCTGTTTCGGGATTTATTTTCACCGTTTAATGGATTTTATTCCAATTTTGGTTTTAG
1 AAATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAACAGATTTTATTCCAATTTTGATTTTAT
*
70005805 TTCCAAAACGAGTATTAAATTA
66 TTCCAAAATGAGTATTAAATTA
* * * ** *
70005827 AAATAAAAAT-TGTTTCGGAATTTATTCCCGCTGTTCAGTAGATTTTATCCCAATTTTGATTTTA
1 AAAT-AAAATCTGTTTCGGGATTTATTCTCGCCGTTCAACAGATTTTATTCCAATTTTGATTTTA
70005891 TTTCCAAAAATGAGTATTAAATTA
65 TTTCC-AAAATGAGTATTAAATTA
* * * * *
70005915 AAATAAAATCTGTTTCGGGATTTATTCTTGCCGATCAACGGATCTTATTCCAAATTTTTATTTTA
1 AAATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAACAGATTTTATTCC-AATTTTGATTTTA
*
70005980 TTTCTAAAAATGAGTATTAAAATTA
65 TTTC-CAAAATGAGTATT-AAATTA
* * * *
70006005 AAATAAAATCTATTTTGGGAATTATTCTCGCTGTTCAACAGATTTTATTCCAATTTTGATTTTAT
1 AAATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAACAGATTTTATTCCAATTTTGATTTTAT
*
70006070 TTCCAAAACGAGTATTAAATTA
66 TTCCAAAATGAGTATTAAATTA
* *
70006092 AAATAAAATCTGTTTCGGGATTTATTCTTGCCGTTCAACGGATTTTATTCCAAAATTTTG-TTTT
1 AAATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAACAGATTTTATTCC--AATTTTGATTTT
* *
70006156 ATTTTCAAAAACGAGTATTAAAATTA
64 A-TTTCCAAAATGAGTATT-AAATTA
* * * ** * ** * * *
70006182 AAATAAAATTTATTTTGGGATTTATTCTCGTTGTTCAGC-GGGTATATTAC-ATTTTGATTTTGT
1 AAATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAACAGATTTTATTCCAATTTTGATTTTAT
* * *
70006245 TGCCAAAAATGAGAAATTAAGTT-
66 TTCC-AAAATGAG-TATTAAATTA
* * * * * * * ** *
70006268 AAATAAAATTTATTTCGAGATTGATCCTCGCTGATCAACAAGATTTTATT-TGATTTT-ATTTTG
1 AAATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAAC-AGATTTTATTCCAATTTTGATTTTA
* *
70006331 TTTCC-AAATTAGAATTAAATT-
65 TTTCCAAAATGAGTATTAAATTA
* * **
70006352 AAATAAAATCTGTTTTGGGATTTATTCTCGCC-ATCTAACAAGATTTTATT-TGATTTT-ATTTT
1 AAATAAAATCTGTTTCGGGATTTATTCTCGCCGTTC-AAC-AGATTTTATTCCAATTTTGATTTT
* * * *
70006414 AATT-CTAAATTAGAATTAAATT-
64 ATTTCCAAAATGAGTATTAAATTA
* * * * *
70006436 AAATAAAATGTGTTTCGGGATTTATTCCCGCTGTTTAACAAGAGTTTATTC
1 AAATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAAC-AGATTTTATTC
70006487 GATATTGTTT
Statistics
Matches: 628, Mismatches: 99, Indels: 43
0.82 0.13 0.06
Matches are distributed among these distances:
83 4 0.01
84 118 0.19
85 7 0.01
86 41 0.07
87 139 0.22
88 158 0.25
89 74 0.12
90 87 0.14
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (87 bp):
AAATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAACAGATTTTATTCCAATTTTGATTTTAT
TTCCAAAATGAGTATTAAATTA
Found at i:70005997 original size:265 final size:265
Alignment explanation
Indices: 70005643--70006210 Score: 768
Period size: 265 Copynumber: 2.1 Consensus size: 265
70005633 TTTTTTTCAA
* * * *
70005643 ATTAAAAGT-AAATAAAATCCGTTTTGGGATTTATTCTCCCCGTTCAACAGATTTTATTCCAATT
1 ATTAAAATTAAAATAAAATCTGTTTTGGGATTTATTCTCCCCGATCAACAGATCTTATTCCAATT
* * * *
70005707 TTGATTTTATTTCCAAAATGAGTATTAAAATTAAAATAAAATCTGTTTCGGGATTTATTTTCACC
66 TTGATTTTATTTCAAAAATGAGTATTAAAATTAAAATAAAATCTATTTCGGGAATTATTCTCACC
* ** *
70005772 GTTTAATGGATTTTATTCCAATTTTGGTTTTAGTTCCAAAACGAGTATTAAATTAAAATAAAAAT
131 GTTCAACAGATTTTATTCCAATTTTGATTTTAGTTCCAAAACGAGTATTAAATTAAAAT-AAAAT
* ** *
70005837 -TGTTTCGGAATTTATTCCCGCTGTTCAGTAGATTTTA-TCC-CAATTTTGATTTTATTTCCAAA
195 CTGTTTCGGAATTTATTCCCGCCGTTCAACAGATTTTATTCCAAAATTTTG-TTTTATTTCCAAA
*
70005899 AATGAGT
259 AACGAGT
* ** *
70005906 ATT-AAATTAAAATAAAATCTGTTTCGGGATTTATTCTTGCCGATCAACGGATCTTATTCCAAAT
1 ATTAAAATTAAAATAAAATCTGTTTTGGGATTTATTCTCCCCGATCAACAGATCTTATTCC-AAT
* * *
70005970 TTTTATTTTATTTCTAAAAATGAGTATTAAAATTAAAATAAAATCTATTTTGGGAATTATTCTCG
65 TTTGATTTTATTTC-AAAAATGAGTATTAAAATTAAAATAAAATCTATTTCGGGAATTATTCTCA
* *
70006035 CTGTTCAACAGATTTTATTCCAATTTTGATTTTATTTCCAAAACGAGTATTAAATTAAAATAAAA
129 CCGTTCAACAGATTTTATTCCAATTTTGATTTTAGTTCCAAAACGAGTATTAAATTAAAATAAAA
* ** * *
70006100 TCTGTTTCGGGATTTATTCTTGCCGTTCAACGGATTTTATTCCAAAATTTTGTTTTATTTTCAAA
194 TCTGTTTCGGAATTTATTCCCGCCGTTCAACAGATTTTATTCCAAAATTTTGTTTTATTTCCAAA
70006165 AACGAGT
259 AACGAGT
* *
70006172 ATTAAAATTAAAATAAAATTTATTTTGGGATTTATTCTC
1 ATTAAAATTAAAATAAAATCTGTTTTGGGATTTATTCTC
70006211 GTTGTTCAGC
Statistics
Matches: 263, Mismatches: 35, Indels: 10
0.85 0.11 0.03
Matches are distributed among these distances:
262 4 0.02
263 47 0.18
264 21 0.08
265 129 0.49
266 24 0.09
267 38 0.14
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (265 bp):
ATTAAAATTAAAATAAAATCTGTTTTGGGATTTATTCTCCCCGATCAACAGATCTTATTCCAATT
TTGATTTTATTTCAAAAATGAGTATTAAAATTAAAATAAAATCTATTTCGGGAATTATTCTCACC
GTTCAACAGATTTTATTCCAATTTTGATTTTAGTTCCAAAACGAGTATTAAATTAAAATAAAATC
TGTTTCGGAATTTATTCCCGCCGTTCAACAGATTTTATTCCAAAATTTTGTTTTATTTCCAAAAA
CGAGT
Found at i:70006117 original size:177 final size:176
Alignment explanation
Indices: 70005643--70006462 Score: 841
Period size: 177 Copynumber: 4.7 Consensus size: 176
70005633 TTTTTTTCAA
* ** * *
70005643 ATTAAAAGT-AAATAAAATCCGTTTTGGGATTTATTCTCCCCGTTCAACAGATTTTATTCCAATT
1 ATTAAAATTAAAATAAAATCTATTTTGGGATTTATTCTCGCTGTTCAACAGATTTTATTCCAATT
*
70005707 TTGATTTTATTTCCAAAATGAGTATTAAAATTAAAATAAAATCTGTTTCGGGATTTATT-TTCAC
66 TTGATTTTATTTCCAAAATGAGTATT-AAATTAAAATAAAATCTGTTTCGGGATTTATTCTT-GC
* * * ** * *
70005771 CGTTTAATGGATTTTATTCC-AATTTTGGTTTTAGTTCCAAAACGAGT
129 CGATCAACGGATTTTATTCCAAATTTTTATTTTATTTCAAAAACGAGT
* * * * ** *
70005818 ATT-AAATTAAAATAAAAAT-TGTTTCGGAATTTATTCCCGCTGTTCAGTAGATTTTATCCCAAT
1 ATTAAAATTAAAAT-AAAATCTATTTTGGGATTTATTCTCGCTGTTCAACAGATTTTATTCCAAT
70005881 TTTGATTTTATTTCCAAAAATGAGTATTAAATTAAAATAAAATCTGTTTCGGGATTTATTCTTGC
65 TTTGATTTTATTTCC-AAAATGAGTATTAAATTAAAATAAAATCTGTTTCGGGATTTATTCTTGC
* *
70005946 CGATCAACGGATCTTATTCCAAATTTTTATTTTATTTCTAAAAATGAGT
129 CGATCAACGGATTTTATTCCAAATTTTTATTTTATTTC-AAAAACGAGT
*
70005995 ATTAAAATTAAAATAAAATCTATTTTGGGAATTATTCTCGCTGTTCAACAGATTTTATTCCAATT
1 ATTAAAATTAAAATAAAATCTATTTTGGGATTTATTCTCGCTGTTCAACAGATTTTATTCCAATT
*
70006060 TTGATTTTATTTCCAAAACGAGTATTAAATTAAAATAAAATCTGTTTCGGGATTTATTCTTGCCG
66 TTGATTTTATTTCCAAAATGAGTATTAAATTAAAATAAAATCTGTTTCGGGATTTATTCTTGCCG
* * *
70006125 TTCAACGGATTTTATTCCAAAATTTTGTTTTATTTTCAAAAACGAGT
131 ATCAACGGATTTTATTCCAAATTTTTATTTTA-TTTCAAAAACGAGT
* * * ** * *
70006172 ATTAAAATTAAAATAAAATTTATTTTGGGATTTATTCTCGTTGTTCAGC-GGGTATATTAC-ATT
1 ATTAAAATTAAAATAAAATCTATTTTGGGATTTATTCTCGCTGTTCAACAGATTTTATTCCAATT
* * * * * * * * * *
70006235 TTGATTTTGTTGCCAAAAATGAGAAATTAAGTT-AAATAAAATTTATTTCGAGATTGATCCTCGC
66 TTGATTTTATTTCC-AAAATGAG-TATTAAATTAAAATAAAATCTGTTTCGGGATTTATTCTTGC
* * ** * * ** *
70006299 TGATCAACAAGATTTTATT--TGA-TTTTATTTTGTTTC-CAAATTAGA
129 CGATCAAC-GGATTTTATTCCAAATTTTTATTTTATTTCAAAAACGAGT
* ** **
70006344 ATT-AAATT-AAATAAAATCTGTTTTGGGATTTATTCTCGC-CATCTAACAAGATTTTATT-TGA
1 ATTAAAATTAAAATAAAATCTATTTTGGGATTTATTCTCGCTGTTC-AAC-AGATTTTATTCCAA
* * * * *
70006405 TTTT-ATTTTAATT-CTAAATTAGAATTAAATT-AAATAAAATGTGTTTCGGGATTTATTC
64 TTTTGATTTTATTTCCAAAATGAGTATTAAATTAAAATAAAATCTGTTTCGGGATTTATTC
70006463 CCGCTGTTTA
Statistics
Matches: 544, Mismatches: 85, Indels: 39
0.81 0.13 0.06
Matches are distributed among these distances:
168 30 0.06
169 8 0.01
170 31 0.06
171 11 0.02
172 19 0.03
173 4 0.01
174 12 0.02
175 122 0.22
176 78 0.14
177 164 0.30
178 65 0.12
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (176 bp):
ATTAAAATTAAAATAAAATCTATTTTGGGATTTATTCTCGCTGTTCAACAGATTTTATTCCAATT
TTGATTTTATTTCCAAAATGAGTATTAAATTAAAATAAAATCTGTTTCGGGATTTATTCTTGCCG
ATCAACGGATTTTATTCCAAATTTTTATTTTATTTCAAAAACGAGT
Done.