Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 232 of 335
Found at i:70006555 original size:83 final size:84
Alignment explanation
Indices: 70005485--70006585 Score: 361
Period size: 87 Copynumber: 12.9 Consensus size: 84
70005475 AAATAAAATT
* * * * * * * * *
70005485 TTAAATTAAATAAAATCTATTTCGGGATTTTTTCCCACCGTTCAAC-AGATTTTATTCTCTATTT
1 TTAAATTAAATAAAATTTGTTTCGAGATTTATTCTCGCTGTTTAACAAGATTTTATT-T-GATTT
* **
70005549 TGATTTTATTTCCAAACGA-ATA
64 T-ATTTTGTTTCCAAATTAGA-A
* * * * *
70005571 TTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCG-TCGTTTAAC-AGATTTTA-TTCA-AT
1 TT-AAATTAAATAAAATTTGTTTCGAGATTTATTCTCGCT-GTTTAACAAGATTTTATTTGATTT
70005632 T-TTTT-TTT-CAAATT---A
64 TATTTTGTTTCCAAATTAGAA
* ** * * * * * **
70005647 --AAAGTAAATAAAATCCGTTTTGGGATTTATTCTCCCCGTTCAAC-AGATTTTATTCCAATTTT
1 TTAAATTAAATAAAATTTGTTTCGAGATTTATTCTCGCTGTTTAACAAGATTTTATT-TGATTTT
* * *
70005709 GATTTTATTTCCAAAATGAGTA
65 -ATTTTGTTTCC-AAATTAGAA
* * * * * ** **
70005731 TTAAAATTAAAATAAAATCTGTTTCGGGATTTATTTTCACCGTTTAA-TGGATTTTATTCCAATT
1 TT-AAATT-AAATAAAATTTGTTTCGAGATTTATTCTCGCTGTTTAACAAGATTTTATT-TGATT
* ** *
70005795 TTGGTTTTAG-TTCCAAAACGAGTA
63 TT-ATTTT-GTTTCC-AAATTAGAA
* * * ** ***
70005819 TTAAATTAAAATAAAAATTGTTTCG-GAATTTATTCCCGCTG-TTCAGTAGATTTTATCCCAATT
1 TTAAATT-AAATAAAATTTGTTTCGAG-ATTTATTCTCGCTGTTTAACAAGATTTTAT-TTGATT
* * *
70005882 TTGATTTTATTTCCAAAAATGAGTA
63 TT-ATTTTGTTTCC--AAATTAGAA
* * * * * * * * **
70005907 TTAAATTAAAATAAAATCTGTTTCGGGATTTATTCTTGCCGATCAAC-GGATCTTATTCCAAATT
1 TTAAATT-AAATAAAATTTGTTTCGAGATTTATTCTCGCTGTTTAACAAGATTTTATT--TGA-T
* * * *
70005971 TTTATTTTATTTCTAAAAATGAGTA
62 TTTATTTTGTTTC--CAAATTAGAA
* * * * * * **
70005996 TTAAAATTAAAATAAAATCTATTTTGGGAATTATTCTCGCTGTTCAAC-AGATTTTATTCCAATT
1 TT-AAATT-AAATAAAATTTGTTTCGAGATTTATTCTCGCTGTTTAACAAGATTTTATT-TGATT
* ** *
70006060 TTGATTTTATTTCCAAAACGAGTA
63 TT-ATTTTGTTTCC-AAATTAGAA
* * * * * * **
70006084 TTAAATTAAAATAAAATCTGTTTCGGGATTTATTCTTGCCGTTCAAC-GGATTTTATTCCAAAAT
1 TTAAATT-AAATAAAATTTGTTTCGAGATTTATTCTCGCTGTTTAACAAGATTTTATT---TGAT
* * * *
70006148 TTTGTTTTATTTTCAAA-AACGAGTA
62 TTTATTTTGTTTCCAAATTA-GA--A
* * * * * * ** * **
70006173 TTAAAATTAAAATAAAATTTATTTTGGGATTTATTCTCGTTGTTCAGC--GGGTATATTACATTT
1 TT-AAATT-AAATAAAATTTGTTTCGAGATTTATTCTCGCTGTTTAACAAGATTTTATTTGATTT
* *
70006236 TGATTTTGTTGCCAAAAATGAGAAA
64 T-ATTTTGTTTCC--AAATTAG-AA
* * * * * *
70006261 TTAAGTTAAATAAAATTTATTTCGAGATTGATCCTCGCTGATCAACAAGATTTTATTTGATTTTA
1 TTAAATTAAATAAAATTTGTTTCGAGATTTATTCTCGCTGTTTAACAAGATTTTATTTGATTTTA
70006326 TTTTGTTTCCAAATTAGAA
66 TTTTGTTTCCAAATTAGAA
* * * ** *
70006345 TTAAATTAAATAAAATCTGTTTTGGGATTTATTCTCGCCATCTAACAAGATTTTATTTGATTTTA
1 TTAAATTAAATAAAATTTGTTTCGAGATTTATTCTCGCTGTTTAACAAGATTTTATTTGATTTTA
** *
70006410 TTTTAATTCTAAATTAGAA
66 TTTTGTTTCCAAATTAGAA
* * * * * * *
70006429 TTAAATTAAATAAAATGTGTTTCGGGATTTATTCCCGCTGTTTAACAAGAGTTTATTCGATATTG
1 TTAAATTAAATAAAATTTGTTTCGAGATTTATTCTCGCTGTTTAACAAGATTTTATTTGATTTTA
* *
70006494 TTTTGTTTCCAAATAAAGAC
66 TTTTGTTTCCAAAT-TAGAA
* * * *
70006514 GT-AATTTAA-AAAATTTGTTTCGAGATTTATTCTCGAC-GTTTAA-TAGATTTTATTTTGATAT
1 TTAAATTAAATAAAATTTGTTTCGAGATTTATTCTCG-CTGTTTAACAAGATTTTA-TTTGATTT
*
70006575 AATTTTGTTTC
64 TATTTTGTTTC
70006586 AAGATTTAAT
Statistics
Matches: 815, Mismatches: 149, Indels: 105
0.76 0.14 0.10
Matches are distributed among these distances:
73 44 0.05
74 1 0.00
75 1 0.00
76 3 0.00
78 4 0.00
79 7 0.01
80 4 0.00
81 8 0.01
82 7 0.01
83 47 0.06
84 146 0.18
85 11 0.01
86 46 0.06
87 180 0.22
88 157 0.19
89 58 0.07
90 91 0.11
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.44
Consensus pattern (84 bp):
TTAAATTAAATAAAATTTGTTTCGAGATTTATTCTCGCTGTTTAACAAGATTTTATTTGATTTTA
TTTTGTTTCCAAATTAGAA
Found at i:70012062 original size:29 final size:29
Alignment explanation
Indices: 70012030--70012089 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
70012020 TGATTAAAGA
70012030 AATGCATAGAAACATGCGATCTAAATATG
1 AATGCATAGAAACATGCGATCTAAATATG
* * *
70012059 AATGCATAGAATCATGCGATTTAAATTTG
1 AATGCATAGAAACATGCGATCTAAATATG
70012088 AA
1 AA
70012090 CAATTGCATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (29 bp):
AATGCATAGAAACATGCGATCTAAATATG
Found at i:70016578 original size:42 final size:42
Alignment explanation
Indices: 70016469--70016632 Score: 172
Period size: 42 Copynumber: 3.9 Consensus size: 42
70016459 TACCATACCA
* * * * *
70016469 ATGCCATATCCTAGATATGGTTTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATAG
* * *
70016511 ATGCCAATAGCCCAGCTATGATCTTACACGAAGTCTCATATCAG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATAT-AG
* * *
70016555 -TGCCATTTCCCAGATATGGTCTTACACGTAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATAG
70016596 ATGCCATATCCCAGATATGGTCTTACAC-ATAGTCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGA-AGTCTCA
70016633 GTAACCCTAA
Statistics
Matches: 101, Mismatches: 16, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 70 0.69
43 29 0.29
44 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATAG
Found at i:70027511 original size:24 final size:23
Alignment explanation
Indices: 70027456--70027500 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
70027446 GAATGGCGAT
* *
70027456 TTATC-GCATTTTTACTGGCAGC
1 TTATCTGCATTTTTACTGGAAGA
70027478 TTATCTGCATTTTTACTGGAAGA
1 TTATCTGCATTTTTACTGGAAGA
70027501 ATTTTTTGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (23 bp):
TTATCTGCATTTTTACTGGAAGA
Found at i:70029078 original size:24 final size:24
Alignment explanation
Indices: 70029031--70029147 Score: 98
Period size: 23 Copynumber: 4.9 Consensus size: 24
70029021 CGTCTCTTAT
*
70029031 GAGCTTACTGATATATCAGCTCATAA
1 GAGCTTACTG-T-TTTCAGCTCATAA
**
70029057 GAGCTTACTGTTTTCAGCTCATTG
1 GAGCTTACTGTTTTCAGCTCATAA
* * * *
70029081 GAGCTTACCG-TTTCAACTCGTAT
1 GAGCTTACTGTTTTCAGCTCATAA
70029104 GAGCTTACTG-TTT-AGCTCA-ATA
1 GAGCTTACTGTTTTCAGCTCATA-A
*
70029126 GAGCTTACTGTTCATCAGCTCA
1 GAGCTTACTGTT-TTCAGCTCA
70029148 AGAGGAGCTA
Statistics
Matches: 74, Mismatches: 13, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
21 1 0.01
22 14 0.19
23 22 0.30
24 20 0.27
25 7 0.09
26 10 0.14
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (24 bp):
GAGCTTACTGTTTTCAGCTCATAA
Found at i:70029339 original size:20 final size:19
Alignment explanation
Indices: 70029308--70029385 Score: 75
Period size: 20 Copynumber: 3.9 Consensus size: 19
70029298 AGATATGTGT
* *
70029308 TTATATGGATGAATTACTA
1 TTATACGGATGAACTACTA
* *
70029327 TTGATACGGATGAATTACTG
1 TT-ATACGGATGAACTACTA
*
70029347 TTATTACTGATGAACTACTA
1 TTA-TACGGATGAACTACTA
*
70029367 TTTATACAGATGAACTACT
1 -TTATACGGATGAACTACT
70029386 GGTTATATGA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
19 3 0.06
20 44 0.88
21 3 0.06
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTATACGGATGAACTACTA
Found at i:70029359 original size:40 final size:39
Alignment explanation
Indices: 70029308--70029414 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 39
70029298 AGATATGTGT
* *
70029308 TTATATGGATGAATTACTATTGATACGGATGAATTACT-G
1 TTATAT-GATGAATTACTATTTATACGGATGAACTACTGG
* *
70029347 TTATTACTGATGAACTACTATTTATACAGATGAACTACTGG
1 TTA-TA-TGATGAATTACTATTTATACGGATGAACTACTGG
*
70029388 TTATATGAATGAATTACAATTTATACG
1 TTATATG-ATGAATTACTATTTATACG
70029415 AATAGAAATG
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 5 0.09
40 47 0.82
41 5 0.09
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (39 bp):
TTATATGATGAATTACTATTTATACGGATGAACTACTGG
Found at i:70034521 original size:26 final size:26
Alignment explanation
Indices: 70034492--70034542 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
70034482 GTTTTAGTGC
*
70034492 AAGCTGTTTATTACCAGTTTTCCCTT
1 AAGCAGTTTATTACCAGTTTTCCCTT
*
70034518 AAGCAGTTTATTACCATTTTTCCCT
1 AAGCAGTTTATTACCAGTTTTCCCT
70034543 ACTCAATTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.45
Consensus pattern (26 bp):
AAGCAGTTTATTACCAGTTTTCCCTT
Found at i:70050256 original size:243 final size:244
Alignment explanation
Indices: 70049813--70050260 Score: 727
Period size: 243 Copynumber: 1.8 Consensus size: 244
70049803 AACTAATAAT
* * *
70049813 TAATGGAAATTGTTGATTTAGATTCAATATATGGTTCTTTGACTATTACTGAAATATTCTTTCCA
1 TAATGAAAATTGTTAATTTAGATTCAATATATGGTTCTTTAACTATTACTGAAATATTCTTTCCA
70049878 TTTGTTCATGTTGTTTCTCATTTAACTCATATAAATAGAAAATGTACATTGCTATTTTTGCAGTT
66 TTTGTTCATGTTGTTTCTCATTTAACTCATATAAATAGAAAATGTACATTGCTATTTTTGCAGTT
* * * * *
70049943 GAATTTCATATTAGAGGACTCGATGATGATGCCTTCAATTTGGATGATGATGAATGAGGCCTCAT
131 GAATTTCAGACTAGAGGACTCGATGATGATGCCTTCAATTTAGATGATGATGAATAAAGCCTCAT
70050008 GCATATTATGAATGAGGCCTCCTATTCAACTAATAATTAATGGATGTAC
196 GCATATTATGAATGAGGCCTCCTATTCAACTAATAATTAATGGATGTAC
* * *
70050057 TAATGAAAATTGTTAATTTAGCTTCAATTTATGGTTCTTTAACTATTACTGAAATATTGTTTCCA
1 TAATGAAAATTGTTAATTTAGATTCAATATATGGTTCTTTAACTATTACTGAAATATTCTTTCCA
* *
70050122 TTTGTTCATGTT-TTTCTCATTTAACTCATATACATAGAAAATGTACATTGTTATTTTTGCAGTT
66 TTTGTTCATGTTGTTTCTCATTTAACTCATATAAATAGAAAATGTACATTGCTATTTTTGCAGTT
* * * * *
70050186 GAATTTTAGACTAGAGGACTTGATGATGATGCCTTCAGTTTAGATGATGATGAGTAAAGCCTCCT
131 GAATTTCAGACTAGAGGACTCGATGATGATGCCTTCAATTTAGATGATGATGAATAAAGCCTCAT
70050251 GCATATTATG
196 GCATATTATG
70050261 TGTGTGCATA
Statistics
Matches: 186, Mismatches: 18, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
243 115 0.62
244 71 0.38
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (244 bp):
TAATGAAAATTGTTAATTTAGATTCAATATATGGTTCTTTAACTATTACTGAAATATTCTTTCCA
TTTGTTCATGTTGTTTCTCATTTAACTCATATAAATAGAAAATGTACATTGCTATTTTTGCAGTT
GAATTTCAGACTAGAGGACTCGATGATGATGCCTTCAATTTAGATGATGATGAATAAAGCCTCAT
GCATATTATGAATGAGGCCTCCTATTCAACTAATAATTAATGGATGTAC
Found at i:70050639 original size:35 final size:35
Alignment explanation
Indices: 70050595--70050893 Score: 265
Period size: 35 Copynumber: 8.6 Consensus size: 35
70050585 AGACAATGTT
*
70050595 TATCGCAACCTTTTTAAAGTTGCCTTAGACGTGTC
1 TATCCCAACCTTTTTAAAGTTGCCTTAGACGTGTC
* **
70050630 TATCCCAACC-TTTTAAAGGTTGCTTTAGACAAGTC
1 TATCCCAACCTTTTTAAA-GTTGCCTTAGACGTGTC
* * * *
70050665 TATTCCAACC-TTTTAAAGGTTTCTTTAGACGGGTC
1 TATCCCAACCTTTTTAAA-GTTGCCTTAGACGTGTC
* * *
70050700 TATCCTAACC-TTTTAAAGCTTGTCTTAGATAG-GTC
1 TATCCCAACCTTTTTAAAG-TTGCCTTAGA-CGTGTC
* *
70050735 TATCCCAA-ATTTTTAAAGGTTACCTTAGACAG-GTC
1 TATCCCAACCTTTTTAAA-GTTGCCTTAGAC-GTGTC
* * *
70050770 TAT-CTAA-CTTTTTAAAGGTT-CCTTTAGAAGGGTC
1 TATCCCAACCTTTTTAAA-GTTGCC-TTAGACGTGTC
* * *
70050804 TATCCCAACCCTTTTAACGTTGTCTTAGACGTGTC
1 TATCCCAACCTTTTTAAAGTTGCCTTAGACGTGTC
* * *
70050839 TATCCCAAACATTTTAACGTTGCCTTAGACGTGTC
1 TATCCCAACCTTTTTAAAGTTGCCTTAGACGTGTC
70050874 TATCCCAACCTTTTTAAAGT
1 TATCCCAACCTTTTTAAAGT
70050894 CGCATTTGAT
Statistics
Matches: 219, Mismatches: 34, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
33 3 0.01
34 34 0.16
35 172 0.79
36 10 0.05
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (35 bp):
TATCCCAACCTTTTTAAAGTTGCCTTAGACGTGTC
Found at i:70050676 original size:70 final size:70
Alignment explanation
Indices: 70050595--70050893 Score: 299
Period size: 70 Copynumber: 4.3 Consensus size: 70
70050585 AGACAATGTT
*
70050595 TATCGCAACCTTTTTAAAGTTGCCTTAGACGTGTCTATCCCAACCTTTTAAAGGTTGCTTTAGAC
1 TATCCCAACCTTTTTAAAGTTGCCTTAGACGTGTCTATCCCAACCTTTTAAAGGTTGCTTTAGAC
*
70050660 AAGTC
66 AGGTC
* * * * * *
70050665 TATTCCAACC-TTTTAAAGGTTTCTTTAGACGGGTCTATCCTAACCTTTTAAAGCTTG-TCTTAG
1 TATCCCAACCTTTTTAAA-GTTGCCTTAGACGTGTCTATCCCAACCTTTTAAAGGTTGCT-TTAG
*
70050728 ATAGGTC
64 ACAGGTC
* * * * *
70050735 TATCCCAA-ATTTTTAAAGGTTACCTTAGACAG-GTCTAT-CTAACTTTTTAAAGGTTCCTTTAG
1 TATCCCAACCTTTTTAAA-GTTGCCTTAGAC-GTGTCTATCCCAACCTTTTAAAGGTTGCTTTAG
70050797 A-AGGGTC
64 ACA-GGTC
* * * * * *
70050804 TATCCCAACCCTTTTAACGTTGTCTTAGACGTGTCTATCCCAAACATTTT-AACGTTGCCTTAGA
1 TATCCCAACCTTTTTAAAGTTGCCTTAGACGTGTCTATCCC-AACCTTTTAAAGGTTGCTTTAGA
70050868 C-GTGTC
65 CAG-GTC
70050874 TATCCCAACCTTTTTAAAGT
1 TATCCCAACCTTTTTAAAGT
70050894 CGCATTTGAT
Statistics
Matches: 189, Mismatches: 28, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
68 2 0.01
69 57 0.30
70 122 0.65
71 8 0.04
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (70 bp):
TATCCCAACCTTTTTAAAGTTGCCTTAGACGTGTCTATCCCAACCTTTTAAAGGTTGCTTTAGAC
AGGTC
Found at i:70050840 original size:104 final size:104
Alignment explanation
Indices: 70050595--70050892 Score: 352
Period size: 104 Copynumber: 2.8 Consensus size: 104
70050585 AGACAATGTT
* * * ** *
70050595 TATCGCAACCTTTTTAAAGTTGCCTTAGACGTGTCTATCCCAACCTTTTAAAGGTTGCTTTAGAC
1 TATCCCAACCCTTTTAAAGTTGTCTTAGACGTGTCTATCCCAAAATTTTAAAGGTTGCCTTAGAC
* * * *
70050660 AAGTCTATTCCAACCTTTTAAAGGTTTCTTTAGACGGGTC
66 AGGTCTA-TCCAACTTTTTAAAGGTTCCTTTAGAAGGGTC
* * * *
70050700 TATCCTAA-CCTTTTAAAGCTTGTCTTAGATAG-GTCTATCCCAAATTTTTAAAGGTTACCTTAG
1 TATCCCAACCCTTTTAAAG-TTGTCTTAGA-CGTGTCTATCCCAAAATTTTAAAGGTTGCCTTAG
*
70050763 ACAGGTCTATCTAACTTTTTAAAGGTTCCTTTAGAAGGGTC
64 ACAGGTCTATCCAACTTTTTAAAGGTTCCTTTAGAAGGGTC
* *
70050804 TATCCCAACCCTTTTAACGTTGTCTTAGACGTGTCTATCCCAAACATTTT-AACGTTGCCTTAGA
1 TATCCCAACCCTTTTAAAGTTGTCTTAGACGTGTCTATCCCAAA-ATTTTAAAGGTTGCCTTAGA
70050868 C-GTGTCTATCCCAACCTTTTTAAAG
65 CAG-GTCTAT-CCAA-CTTTTTAAAG
70050893 TCGCATTTGA
Statistics
Matches: 164, Mismatches: 21, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
103 2 0.01
104 85 0.52
105 66 0.40
106 11 0.07
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (104 bp):
TATCCCAACCCTTTTAAAGTTGTCTTAGACGTGTCTATCCCAAAATTTTAAAGGTTGCCTTAGAC
AGGTCTATCCAACTTTTTAAAGGTTCCTTTAGAAGGGTC
Found at i:70051516 original size:24 final size:24
Alignment explanation
Indices: 70051500--70051554 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
70051490 ACCCTCGTAC
70051500 TCATCTTCATCTCGACCCTTATCT
1 TCATCTTCATCTCGACCCTTATCT
* * *
70051524 TCATCTTCATCTCTACCTTTGTCT
1 TCATCTTCATCTCGACCCTTATCT
*
70051548 TCGTCTT
1 TCATCTT
70051555 TGTCTCTATC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.13, C:0.35, G:0.05, T:0.47
Consensus pattern (24 bp):
TCATCTTCATCTCGACCCTTATCT
Found at i:70054511 original size:19 final size:19
Alignment explanation
Indices: 70054486--70054548 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
70054476 AATCTTTAAG
70054486 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
70054505 AATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
70054524 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
70054543 GATATG
1 GATATG
70054549 ATATGATATG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 40 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:70058496 original size:21 final size:21
Alignment explanation
Indices: 70058437--70058624 Score: 103
Period size: 21 Copynumber: 9.0 Consensus size: 21
70058427 GCCCGAAGGC
* *
70058437 TGAACAGAAGCTCATGAGAGC
1 TGAACAGAAGCTCATAAGAGT
* * * * *
70058458 TAAATAGAAACCCATAAGGGT
1 TGAACAGAAGCTCATAAGAGT
* *
70058479 TGAACGGAAGCTCATAAGAGC
1 TGAACAGAAGCTCATAAGAGT
* * * *
70058500 TGAACGGAAACCCATAAGGGT
1 TGAACAGAAGCTCATAAGAGT
* * *
70058521 TAAACAAAAGCTCA-ATAGAGC
1 TGAACAGAAGCTCATA-AGAGT
* * *
70058542 TGAACGGAAACCCATAA-AGGT
1 TGAACAGAAGCTCATAAGA-GT
* *
70058563 TAAACAAAAGCTCAATAA-AGT
1 TGAACAGAAGCTC-ATAAGAGT
* *
70058584 TGAACAGAAACTCATATGAGT
1 TGAACAGAAGCTCATAAGAGT
* *
70058605 TAAACAGAAGCTCATGAGAG
1 TGAACAGAAGCTCATAAGAG
70058625 CTAAACGAAA
Statistics
Matches: 118, Mismatches: 44, Indels: 10
0.69 0.26 0.06
Matches are distributed among these distances:
20 5 0.04
21 107 0.91
22 6 0.05
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.16
Consensus pattern (21 bp):
TGAACAGAAGCTCATAAGAGT
Found at i:70058499 original size:42 final size:42
Alignment explanation
Indices: 70058439--70058634 Score: 209
Period size: 42 Copynumber: 4.7 Consensus size: 42
70058429 CCGAAGGCTG
* * * *
70058439 AACAGAAGCTCATGAGAGCTAAATAGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTA
* *
70058481 AACGGAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTA
1 AACAGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTA
* * *
70058523 AACAAAAGCTCA-ATAGAGCTGAACGGAAACCCATAAAGGTTA
1 AACAGAAGCTCATA-AGAGCTGAACAGAAACCCATAAGGGTTA
* * * * *
70058565 AACAAAAGCTCAATAA-AGTTGAACAGAAACTCATATGAGTTA
1 AACAGAAGCTC-ATAAGAGCTGAACAGAAACCCATAAGGGTTA
* *
70058607 AACAGAAGCTCATGAGAGCTAAAC-GAAA
1 AACAGAAGCTCATAAGAGCTGAACAGAAA
70058635 AGTAAACATG
Statistics
Matches: 131, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
41 8 0.06
42 120 0.92
43 2 0.02
44 1 0.01
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.16
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTA
Found at i:70072498 original size:12 final size:12
Alignment explanation
Indices: 70072478--70072508 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
70072468 ACGCCACATA
70072478 GCCGTGTGGTAG
1 GCCGTGTGGTAG
*
70072490 GCTGTGTGGTAG
1 GCCGTGTGGTAG
70072502 GCCGTGT
1 GCCGTGT
70072509 ACGACAACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.06, C:0.16, G:0.48, T:0.29
Consensus pattern (12 bp):
GCCGTGTGGTAG
Found at i:70072690 original size:17 final size:18
Alignment explanation
Indices: 70072668--70072703 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
70072658 CCAATCTGGA
*
70072668 CGTGTGGG-CTACACGGG
1 CGTGTGGGCCCACACGGG
70072685 CGTGTGGGCCCACACGGG
1 CGTGTGGGCCCACACGGG
70072703 C
1 C
70072704 AAGCCACAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.11, C:0.31, G:0.44, T:0.14
Consensus pattern (18 bp):
CGTGTGGGCCCACACGGG
Found at i:70077332 original size:24 final size:24
Alignment explanation
Indices: 70077299--70077374 Score: 82
Period size: 24 Copynumber: 3.1 Consensus size: 24
70077289 GATACATTAG
*
70077299 CTCGTAAGAGCTTACTGTTTTCAA
1 CTCGTAAGAGCTTACTATTTTCAA
* *
70077323 CTCGTCAGAGCTTACTATTTTCAG
1 CTCGTAAGAGCTTACTATTTTCAA
* *
70077347 CTCG-ATAGAGTTTACTATTCGTCAA
1 CTCGTA-AGAGCTTACTATT-TTCAA
70077372 CTC
1 CTC
70077375 AGGAGGAGTT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 37 0.86
25 6 0.14
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (24 bp):
CTCGTAAGAGCTTACTATTTTCAA
Found at i:70084404 original size:24 final size:24
Alignment explanation
Indices: 70084352--70084397 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
70084342 GGACTCACCA
70084352 CAGCTCGTATGAGCTTACTGTTCT
1 CAGCTCGTATGAGCTTACTGTTCT
70084376 CAGCTCGTCA-GAGCTTACTGTT
1 CAGCTCGT-ATGAGCTTACTGTT
70084398 TCTAGCTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (24 bp):
CAGCTCGTATGAGCTTACTGTTCT
Found at i:70086557 original size:40 final size:40
Alignment explanation
Indices: 70086512--70086641 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
70086502 CGGAATACAA
70086512 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
70086552 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
70086592 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
70086632 CCGGATATAA
1 CCGGATATAA
70086642 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:70093771 original size:40 final size:40
Alignment explanation
Indices: 70093726--70093855 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
70093716 CGGAATACAA
70093726 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
70093766 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
70093806 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
70093846 CCGGATATAA
1 CCGGATATAA
70093856 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:70096322 original size:21 final size:21
Alignment explanation
Indices: 70096270--70096322 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
70096260 CAGGGTGTCA
*
70096270 ATAGTTTAGTTTTAAAGTTTTG
1 ATAG-TTAATTTTAAAGTTTTG
* ** *
70096292 TTAGAAAATTTTAACGTTTTG
1 ATAGTTAATTTTAAAGTTTTG
70096313 ATAGTTAATT
1 ATAGTTAATT
70096323 AATTAAAAAG
Statistics
Matches: 23, Mismatches: 8, Indels: 1
0.72 0.25 0.03
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.51
Consensus pattern (21 bp):
ATAGTTAATTTTAAAGTTTTG
Found at i:70097488 original size:21 final size:21
Alignment explanation
Indices: 70097459--70097526 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
70097449 ACTTATATGA
*
70097459 GTTTTAGTTTAACCCTTCTGG
1 GTTTCAGTTTAACCCTTCTGG
* * **
70097480 GTTTCAGTTTAGCTCTTCTAA
1 GTTTCAGTTTAACCCTTCTGG
* * *
70097501 GCTTCATTTTAACCCTTATGG
1 GTTTCAGTTTAACCCTTCTGG
70097522 GTTTC
1 GTTTC
70097527 CATTCAGCTC
Statistics
Matches: 34, Mismatches: 13, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.47
Consensus pattern (21 bp):
GTTTCAGTTTAACCCTTCTGG
Found at i:70097513 original size:42 final size:42
Alignment explanation
Indices: 70097464--70097576 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 42
70097454 TATGAGTTTT
* *
70097464 AGTTTAACCCTTCTGGGTTTCAGTTTAGCTCTTCTAAGCTTC
1 AGTTTAACCCTTATGGGTTTCAGTTTAGCTCTTATAAGCTTC
* *
70097506 ATTTTAACCCTTATGGGTTTCCA-TTCAGCTCTTATAAGCTTC
1 AGTTTAACCCTTATGGGTTT-CAGTTTAGCTCTTATAAGCTTC
*
70097548 CGTTTAACCCTTATGGGTTTTC-GTTTAGC
1 AGTTTAACCCTTATGGG-TTTCAGTTTAGC
70097577 ACCTATGTGC
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
42 56 0.92
43 5 0.08
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.43
Consensus pattern (42 bp):
AGTTTAACCCTTATGGGTTTCAGTTTAGCTCTTATAAGCTTC
Found at i:70100333 original size:17 final size:18
Alignment explanation
Indices: 70100313--70100346 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
70100303 TATAAAAATG
70100313 TCTAATTTATTT-TTTAA
1 TCTAATTTATTTATTTAA
70100330 TCTAATTTATTTATTTA
1 TCTAATTTATTTATTTA
70100347 TTTAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (18 bp):
TCTAATTTATTTATTTAA
Found at i:70103730 original size:15 final size:16
Alignment explanation
Indices: 70103705--70103736 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
70103695 CGGTAGCGGC
70103705 ACCGTCCGAAACCGCT
1 ACCGTCCGAAACCGCT
70103721 ACCG-CCGAAACCGCT
1 ACCGTCCGAAACCGCT
70103736 A
1 A
70103737 TTATTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.28, C:0.44, G:0.19, T:0.09
Consensus pattern (16 bp):
ACCGTCCGAAACCGCT
Found at i:70111098 original size:40 final size:40
Alignment explanation
Indices: 70111044--70111261 Score: 208
Period size: 40 Copynumber: 5.5 Consensus size: 40
70111034 GCTCGATTGT
* * * * *
70111044 CTTCGGGACA-TAGCCTGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGA-ATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* *
70111084 CTTCGGGAATTAGCCCGGATTTAGTAACT-GTACAAATGC
1 CTTCGGGAATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * *
70111123 CTTCGGGACTTAACTCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
70111163 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * * *
70111203 CTTCAGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAG-CCCGGTTTTAGTAAC-TCGCACAAATGC
*
70111244 CTTCGGGACTTAGCCCGG
1 CTTCGGGAATTAGCCCGG
70111262 ATACCATTGA
Statistics
Matches: 149, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.22
40 91 0.61
41 24 0.16
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (40 bp):
CTTCGGGAATTAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:70111150 original size:39 final size:40
Alignment explanation
Indices: 70111072--70111261 Score: 220
Period size: 40 Copynumber: 4.8 Consensus size: 40
70111062 TTATAGTGAT
* * * * *
70111072 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
* *
70111112 T-GTACAAATGCCTTCGGGACTTAACTCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
70111151 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
* * * * * *
70111191 TCGCACAAATGCCTTCAGGAATTGACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
* * *
70111231 TTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 -TCGCACAAATGCCTTCGGGACTTAACCCGG
70111262 ATACCATTGA
Statistics
Matches: 127, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 32 0.25
40 71 0.56
41 24 0.19
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
Found at i:70111155 original size:79 final size:81
Alignment explanation
Indices: 70111071--70111263 Score: 237
Period size: 79 Copynumber: 2.4 Consensus size: 81
70111061 GTTATAGTGA
* * * * *
70111071 TTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACT-GTACAAATGCCTTCGGGACTTA
1 TTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCAGGAATTA
* * *
70111135 ACTCGGTTTTGGTAAC
66 ACCCGGATTTAGTAAC
* * * *
70111151 -TCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCAGGAATTG
1 TTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCAGGAATTA
*
70111215 ACCCGGATTTAGTCAC
66 ACCCGGATTTAGTAAC
* *
70111231 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 TTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
70111264 ACCATTGAAA
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 36 0.38
80 30 0.32
81 28 0.30
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (81 bp):
TTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCAGGAATTA
ACCCGGATTTAGTAAC
Found at i:70123953 original size:40 final size:40
Alignment explanation
Indices: 70123868--70124084 Score: 224
Period size: 40 Copynumber: 5.4 Consensus size: 40
70123858 GCTCGATTGT
* * * *
70123868 CTTCGGGACATAG-CCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
* *
70123907 CTTCGGGAATTAGCCCGGATTTAGTAACTCGTACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
70123947 CTTCGGGACTTAACTCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
70123987 CTTCTGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
70124027 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
70124068 CTTCGGGACTTAGCCCG
1 CTTCGGGACTTAGCCCG
70124085 ATACCATTGA
Statistics
Matches: 150, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
39 11 0.07
40 112 0.75
41 26 0.17
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:70130085 original size:20 final size:20
Alignment explanation
Indices: 70130060--70130103 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
70130050 AGGGACTAAA
* *
70130060 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
70130080 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
70130100 ATGA
1 ATGA
70130104 GTACATGTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:70130480 original size:23 final size:23
Alignment explanation
Indices: 70130453--70130498 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
70130443 TGCATGTAAT
70130453 GTGATTAATGTTGATGTGCTTTA
1 GTGATTAATGTTGATGTGCTTTA
70130476 GTGATTAATGTTGATGTGCTTTA
1 GTGATTAATGTTGATGTGCTTTA
70130499 CTTGTATGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.04, G:0.26, T:0.48
Consensus pattern (23 bp):
GTGATTAATGTTGATGTGCTTTA
Found at i:70133072 original size:28 final size:28
Alignment explanation
Indices: 70133040--70133096 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
70133030 AAGAAAGGGT
70133040 TAGAATCGAGATTGAATTGAAAAATTGC
1 TAGAATCGAGATTGAATTGAAAAATTGC
70133068 TAGAATCGAGATTGAATTGAAAAATTGC
1 TAGAATCGAGATTGAATTGAAAAATTGC
70133096 T
1 T
70133097 TAACTAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (28 bp):
TAGAATCGAGATTGAATTGAAAAATTGC
Found at i:70140016 original size:47 final size:47
Alignment explanation
Indices: 70139947--70140042 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
70139937 TCTTAAACAA
70139947 GGTCTATTTCTCCTCTGAATAAGAGCTTATCTTGAATCAGTATCCTG
1 GGTCTATTTCTCCTCTGAATAAGAGCTTATCTTGAATCAGTATCCTG
70139994 GGTCTATTTCTCCTCTGAATAAGAGCTTATCTTGAATCAGTATCCTG
1 GGTCTATTTCTCCTCTGAATAAGAGCTTATCTTGAATCAGTATCCTG
70140041 GG
1 GG
70140043 ATATTAAAAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.38
Consensus pattern (47 bp):
GGTCTATTTCTCCTCTGAATAAGAGCTTATCTTGAATCAGTATCCTG
Found at i:70142740 original size:11 final size:11
Alignment explanation
Indices: 70142726--70142760 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
70142716 ACCAAGAGTC
70142726 AAAAAGAGCAA
1 AAAAAGAGCAA
*
70142737 AAAACGAGCAA
1 AAAAAGAGCAA
*
70142748 AAAATGAGCAA
1 AAAAAGAGCAA
70142759 AA
1 AA
70142761 CGGACCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.69, C:0.11, G:0.17, T:0.03
Consensus pattern (11 bp):
AAAAAGAGCAA
Found at i:70149212 original size:6 final size:6
Alignment explanation
Indices: 70149201--70149252 Score: 68
Period size: 6 Copynumber: 8.5 Consensus size: 6
70149191 TCCTCCTATC
* * *
70149201 TTTTTA TTTTTA TCTCTA TTTTTC TTTTTA TTTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA
70149250 TTT
1 TTT
70149253 CAATTTTATT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
6 33 0.85
7 6 0.15
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:70149245 original size:25 final size:25
Alignment explanation
Indices: 70149199--70149267 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
70149189 AATCCTCCTA
* *
70149199 TCTTTTTA-TTTTTATCTCTATTTT
1 TCTTTTTATTTTTTATTTTTATTTT
70149223 TCTTTTTATTTTTTATTTTTATTTT
1 TCTTTTTATTTTTTATTTTTATTTT
* **
70149248 TATTTCAATTTTATTATTTT
1 TCTTTTTATTTT-TTATTTT
70149268 CTTTTAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
24 8 0.21
25 23 0.61
26 7 0.18
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (25 bp):
TCTTTTTATTTTTTATTTTTATTTT
Found at i:70152936 original size:69 final size:69
Alignment explanation
Indices: 70152825--70153530 Score: 199
Period size: 69 Copynumber: 10.2 Consensus size: 69
70152815 TTTATATACG
* ** * * *
70152825 AACCTTGGTTTTACAGTTGGGAGCTTTACTCTCGCTAGTTATGTTAGAGGCCGCGACTCTTCGCC
1 AACCTTGATTTTACAACTAGGAGCTTTACTCTCGCTAATTATGTTAGAGGCCACGACTCTTCGCC
70152890 TACA
66 TACA
** * * ** * *
70152894 AACCTTGATTTTACAACTAGGAGCTTTGTTCTTGCTAATTATGTTTGAGGTTATGGCTCTTCGCC
1 AACCTTGATTTTACAACTAGGAGCTTTACTCTCGCTAATTATGTTAGAGGCCACGACTCTTCGCC
* *
70152959 TGCG
66 TACA
** * ** * * * **** * *
70152963 AACCTTGATTTTACAGTTGGGAGCTTCGCTCTCGCTAACTGTGTT-GAATGTTGTGGCTCTTTGC
1 AACCTTGATTTTACAACTAGGAGCTTTACTCTCGCTAATTATGTTAG-AGGCCACGACTCTTCGC
* *
70153027 TTGCA
65 CTACA
* * * ** * * * * * * *
70153032 AGCCTTAATTTTATAGTTGGGACCTTTGCTCTCGTTAAATATGTTAGAGGTCACAACTCTTCGCC
1 AACCTTGATTTTACAACTAGGAGCTTTACTCTCGCTAATTATGTTAGAGGCCACGACTCTTCGCC
*
70153097 TGCA
66 TACA
** * * * * * * * * * * *
70153101 AACCTCAATTTTATAGCTGGGAGCTTTGCTTTTGCTAACTATGTTAGATGTCAAGGCTCTTCGCC
1 AACCTTGATTTTACAACTAGGAGCTTTACTCTCGCTAATTATGTTAGAGGCCACGACTCTTCGCC
**
70153166 TATG
66 TACA
* * * ** * * * *
70153170 ATCCTCGATTTTACAGCT-GAGAGCTTTGTTCTCGCTAACTATGTTGGAGATCGCA-G-CTCTTT
1 AACCTTGATTTTACAACTAG-GAGCTTTACTCTCGCTAATTATGTTAGAG-GC-CACGACTCTTC
* *
70153232 TCCTACG
63 GCCTACA
* * * * ** * * *
70153239 AACATCGATTTTAC-AGTTGAGAGCTTTGGTCTCGCTAACTGTGTTGGA-G--ATCGTAGCTCTT
1 AACCTTGATTTTACAACTAG-GAGCTTTACTCTCGCTAATTATGTTAGAGGCCA-CG-A-CTCTT
** *
70153300 TTCCTACG
62 CGCCTACA
* * * ** * * * * ** *
70153308 AACATCGATTTTACAGCT-GAGAGCTTTGTTCTCACTAACTGTGTTGGAGATCAC-AGCTCTTTG
1 AACCTTGATTTTACAACTAG-GAGCTTTACTCTCGCTAATTATGTTAGAGGCCACGA-CTCTTCG
* *
70153371 CCTGCG
64 CCTACA
* * * * *
70153377 AACCTCGATTTTACAGCTGGGAGCTTTACTCTCGCTAATTGTGTTAGAGGTCACGACTCTTCGCC
1 AACCTTGATTTTACAACTAGGAGCTTTACTCTCGCTAATTATGTTAGAGGCCACGACTCTTCGCC
* *
70153442 TGCG
66 TACA
* ** * * * * * * *
70153446 AACCTTGATTTTATAGTTGGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGCCACGGCTCTTTGCC
1 AACCTTGATTTTACAACTAGGAGCTTTACTCTCGCTAATTATGTTAGAGGCCACGACTCTTCGCC
***
70153511 TGTG
66 TACA
70153515 AACCTTGATTTTACAA
1 AACCTTGATTTTACAA
70153531 ATGATAATTT
Statistics
Matches: 513, Mismatches: 107, Indels: 34
0.78 0.16 0.05
Matches are distributed among these distances:
64 1 0.00
66 1 0.00
68 3 0.01
69 499 0.97
70 5 0.01
71 3 0.01
72 1 0.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (69 bp):
AACCTTGATTTTACAACTAGGAGCTTTACTCTCGCTAATTATGTTAGAGGCCACGACTCTTCGCC
TACA
Found at i:70153181 original size:138 final size:138
Alignment explanation
Indices: 70152823--70153529 Score: 571
Period size: 138 Copynumber: 5.1 Consensus size: 138
70152813 TTTTTATATA
* * * * ** * * * ** *
70152823 CGAACCTTGGTTTTACAGTTGGGAGCTTTACTCTCGCTAGTTATGTTAGAGGCCGCGACTCTTCG
1 CGAACCTCGATTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTGTTAGATGTCAAGGCTCTTCG
* * * * * * * * * **
70152888 CCTACAAACCTTGATTTTACAACT-AGGAGCTTTGTTCTTGCTAATTATGTTTGAGGTTATGGCT
66 CCTACGAACCTCGATTTTACAGCTGA-GAGCTTTGCTCTCGCTAACTATGTTGGAGATCACAGCT
*
70152952 CTTCGCCTG
130 CTTTGCCTG
* * * *** *
70152961 CGAACCTTGATTTTACAGTTGGGAGCTTCGCTCTCGCTAACTGTGTT-GAATGTTGTGGCTCTTT
1 CGAACCTCGATTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTGTTAG-ATGTCAAGGCTCTTC
* * ** * * * * * * * * *
70153025 GCTTGC-AAGCCTTAATTTTATAGTTGGGACCTTTGCTCTCGTTAAATATGTTAGAGGTCACAAC
65 GCCTACGAA-CCTCGATTTTACAGCTGAGAGCTTTGCTCTCGCTAACTATGTTGGAGATCACAGC
*
70153089 TCTTCGCCTG
129 TCTTTGCCTG
* * * * * *
70153099 CAAACCTCAATTTTATAGCTGGGAGCTTTGCTTTTGCTAACTATGTTAGATGTCAAGGCTCTTCG
1 CGAACCTCGATTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTGTTAGATGTCAAGGCTCTTCG
* * * *
70153164 CCTATGATCCTCGATTTTACAGCTGAGAGCTTTGTTCTCGCTAACTATGTTGGAGATCGCAGCTC
66 CCTACGAACCTCGATTTTACAGCTGAGAGCTTTGCTCTCGCTAACTATGTTGGAGATCACAGCTC
* *
70153229 TTTTCCTA
131 TTTGCCTG
* * * *
70153237 CGAACATCGATTTTACAGTTGAGAGCTTTGGTCTCGCTAACTGTGTTGGAGATCGT--A-GCTCT
1 CGAACCTCGATTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTGTT--AGAT-GTCAAGGCTCT
** * * * *
70153299 TTTCCTACGAACATCGATTTTACAGCTGAGAGCTTTGTTCTCACTAACTGTGTTGGAGATCACAG
63 TCGCCTACGAACCTCGATTTTACAGCTGAGAGCTTTGCTCTCGCTAACTATGTTGGAGATCACAG
70153364 CTCTTTGCCTG
128 CTCTTTGCCTG
* * * * *
70153375 CGAACCTCGATTTTACAGCTGGGAGCTTTACTCTCGCTAATTGTGTTAGAGGTCACGACTCTTCG
1 CGAACCTCGATTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTGTTAGATGTCAAGGCTCTTCG
* * * * * * ** *
70153440 CCTGCGAACCTTGATTTTATAGTTGGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGCCACGGCTC
66 CCTACGAACCTCGATTTTACAGCTGAGAGCTTTGCTCTCGCTAACTATGTTGGAGATCACAGCTC
70153505 TTTGCCTG
131 TTTGCCTG
* *
70153513 TGAACCTTGATTTTACA
1 CGAACCTCGATTTTACA
70153530 AATGATAATT
Statistics
Matches: 452, Mismatches: 106, Indels: 22
0.78 0.18 0.04
Matches are distributed among these distances:
135 2 0.00
136 3 0.01
137 3 0.01
138 435 0.96
139 3 0.01
140 4 0.01
141 2 0.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (138 bp):
CGAACCTCGATTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTGTTAGATGTCAAGGCTCTTCG
CCTACGAACCTCGATTTTACAGCTGAGAGCTTTGCTCTCGCTAACTATGTTGGAGATCACAGCTC
TTTGCCTG
Found at i:70153529 original size:207 final size:204
Alignment explanation
Indices: 70152823--70153499 Score: 615
Period size: 207 Copynumber: 3.3 Consensus size: 204
70152813 TTTTTATATA
* * ** * *
70152823 CGAACCTTGGTTTTACAGTTGGGAGCTTTACTCTCGCTAGTTATGTTAGAGGCCGCGACTCTTCG
1 CGAACCTTGATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTATGTTAGAGGCCACAACTCTTCG
* * * * * *
70152888 CCTACAAACCTTGATTTTACAACT-AGGAGCTTTGTTCTTGCTAATTATGTTTGAGGTTATGGCT
66 CCTACAAACCTCGATTTTACAGCTGA-GAGCTTTGTTCTTGCTAACTATGTTAGA-GTCA-AGCT
* * * * * *
70152952 CTTCGCCTGCGAACCTTGATTTTACAGTTGGGAGCTTCGCTCTCGCTAACTGTGTTGAATGTTGT
128 CTTCGCCTGCGAACCTCGATTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTGTTG-AGGTCGC
* *
70153017 GGCTCTTTGCTTG
192 GACTCTTTGCCTG
* * * * * *
70153030 C-AAGCCTTAATTTTATAGTTGGGACCTTTGCTCTCGTTAAATATGTTAGAGGTCACAACTCTTC
1 CGAA-CCTTGATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTATGTTAGAGGCCACAACTCTTC
* * * *
70153094 GCCTGCAAACCTCAATTTTATAGCTGGGAGCTTTGCTT-TTGCTAACTATGTTAGATGTCAAGGC
65 GCCTACAAACCTCGATTTTACAGCTGAGAGCTTTG-TTCTTGCTAACTATGTTAGA-GTCAA-GC
** * * * * *
70153158 TCTTCGCCTATGATCCTCGATTTTACAGCTGAGAGCTTTGTTCTCGCTAACTATGTTGGAGATCG
127 TCTTCGCCTGCGAACCTCGATTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTGTT-GAGGTCG
* *
70153223 C-AGCTCTTTTCCTA
191 CGA-CTCTTTGCCTG
* * * * * * ** ** * **
70153237 CGAACATCGATTTTACAGTTGAGAGCTTTGGTCTCGCTAACTGTGTTGGAGATCGTAGCTCTTTT
1 CGAACCTTGATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTATGTTAGAGGCCACAACTCTTCG
* * ** * *
70153302 CCTACGAACATCGATTTTACAGCTGAGAGCTTTGTTCTCACTAACTGTGTTGGAGATCACAGCTC
66 CCTACAAACCTCGATTTTACAGCTGAGAGCTTTGTTCTTGCTAACTATGTTAGAG-TCA-AGCTC
* * * *
70153367 TTTGCCTGCGAACCTCGATTTTACAGCTGGGAGCTTTACTCTCGCTAATTGTGTTAGAGGTCACG
129 TTCGCCTGCGAACCTCGATTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTGTT-GAGGTCGCG
*
70153432 ACTCTTCGCCTG
193 ACTCTTTGCCTG
* * *
70153444 CGAACCTTGATTTTATAGTTGGGAGCTTTGCTCTCGCTAACTGTGTTGGAGGCCAC
1 CGAACCTTGATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTATGTTAGAGGCCAC
70153500 GGCTCTTTGC
Statistics
Matches: 369, Mismatches: 90, Indels: 22
0.77 0.19 0.05
Matches are distributed among these distances:
206 5 0.01
207 357 0.97
208 7 0.02
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (204 bp):
CGAACCTTGATTTTACAGTTGGGAGCTTTGCTCTCGCTAACTATGTTAGAGGCCACAACTCTTCG
CCTACAAACCTCGATTTTACAGCTGAGAGCTTTGTTCTTGCTAACTATGTTAGAGTCAAGCTCTT
CGCCTGCGAACCTCGATTTTACAGCTGGGAGCTTTGCTCTCGCTAACTGTGTTGAGGTCGCGACT
CTTTGCCTG
Found at i:70157328 original size:50 final size:50
Alignment explanation
Indices: 70157252--70157488 Score: 296
Period size: 50 Copynumber: 4.7 Consensus size: 50
70157242 TAAGATGGTT
* * *
70157252 TTAGGTCACGTGTGTATTACTGAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
** * * *
70157302 TTAGGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTA-ATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-AGATTG
* * * *
70157352 CTTCGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 -TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * *
70157403 TTAGGTCACGTGTATAGTACTAAGTGCAGGCTACTACGTATACCAGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* *
70157453 TTAGGTCGCATGTGTAGTAGTAAGTGCAGGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
70157489 TGCGTACTAG
Statistics
Matches: 157, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
50 116 0.74
51 41 0.26
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:70157388 original size:101 final size:100
Alignment explanation
Indices: 70157252--70157488 Score: 287
Period size: 101 Copynumber: 2.4 Consensus size: 100
70157242 TAAGATGGTT
* * * * * ** *
70157252 TTAGGTCACGTGTGTATTACTGAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTTGCATGTGT
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTAT
* *
70157317 AGTACTAAGTGCAGGCTACTATGCGTACCTA-ATAG
66 AGTACTAAGTGCAGGCTACTACGCATACC-AGATAG
* * *
70157352 CTTCGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTA
1 -TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTA
* *
70157417 TAGTACTAAGTGCAGGCTACTACGTATACCAGATTG
65 TAGTACTAAGTGCAGGCTACTACGCATACCAGATAG
* * *
70157453 TTAGGTCGCATGTGTAGTAGTAAGTGCAGGCTACTA
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTA
70157489 TGCGTACTAG
Statistics
Matches: 116, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
100 33 0.28
101 83 0.72
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (100 bp):
TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTAT
AGTACTAAGTGCAGGCTACTACGCATACCAGATAG
Found at i:70157505 original size:151 final size:152
Alignment explanation
Indices: 70157226--70157507 Score: 442
Period size: 151 Copynumber: 1.9 Consensus size: 152
70157216 GTATTTTGTA
* * * * *
70157226 CAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTATTACTGAGTGCAGGCTACTACGT
1 CAGGCTACTACGTGTATAAGATGG-TTTAGGTCACGTGTATAGTACTAAGTGCAGGCTACTACGT
* * *
70157291 GTACCAGATTGTTAGGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTAATAGCTTC
65 ATACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTAAGAGCTTC
70157356 GATCACATGTGTAGTACTAAGTG
130 GATCACATGTGTAGTACTAAGTG
*
70157379 CAGGCTACTACGTGTATCAGATGG-TTAGGTCACGTGTATAGTACTAAGTGCAGGCTACTACGTA
1 CAGGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTATAGTACTAAGTGCAGGCTACTACGTA
*
70157443 TACCAGATTGTTAGGTCGCATGTGTAGTAGTAAGTGCAGGCTACTATGCGTA-CTAGAGAGCTTC
66 TACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTA-AGAGCTTC
70157507 G
130 G
70157508 GTTACAAGGG
Statistics
Matches: 118, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
150 3 0.03
151 94 0.80
153 21 0.18
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (152 bp):
CAGGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTATAGTACTAAGTGCAGGCTACTACGTA
TACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTAAGAGCTTCG
ATCACATGTGTAGTACTAAGTG
Found at i:70157534 original size:151 final size:152
Alignment explanation
Indices: 70157213--70157534 Score: 432
Period size: 151 Copynumber: 2.1 Consensus size: 152
70157203 GAGAACACGT
* * * * * * *
70157213 GTAGTATTTTGTACAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTATTACTGAGTG
1 GTAGTAATATGTACAGGCTACTACGTGTATAAGATGG-TTTAGGTCACGTGTATAGTACTAAGTG
* *
70157278 CAGGCTACTACGTGTACCAGATTGTTAGGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGT
65 CAGGCTACTACGTATACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGT
* * *
70157343 ACCTAATAGCTTCGATCACATGT
130 ACCTAAGAGCTTCGATCACAAGG
* * * *
70157366 GTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCACGTGTATAGTACTAAGTGC
1 GTAGTAATATGTACAGGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTATAGTACTAAGTGC
*
70157430 AGGCTACTACGTATACCAGATTGTTAGGTCGCATGTGTAGTAGTAAGTGCAGGCTACTATGCGTA
66 AGGCTACTACGTATACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
* *
70157495 -CTAGAGAGCTTCGGTTACAAGG
131 CCTA-AGAGCTTCGATCACAAGG
*
70157517 GTGGTAATATGTACAGGC
1 GTAGTAATATGTACAGGC
70157535 CACCGAGTAT
Statistics
Matches: 146, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
150 3 0.02
151 113 0.77
153 30 0.21
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (152 bp):
GTAGTAATATGTACAGGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTATAGTACTAAGTGC
AGGCTACTACGTATACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
CCTAAGAGCTTCGATCACAAGG
Found at i:70162258 original size:22 final size:22
Alignment explanation
Indices: 70162230--70162271 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
70162220 CTGCCTCTAC
*
70162230 GAACTTATGAGTCCGTTCGTGA
1 GAACTTATGAGCCCGTTCGTGA
70162252 GAACTTATGAGCCCGTTCGT
1 GAACTTATGAGCCCGTTCGT
70162272 ATAGGTCAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.31
Consensus pattern (22 bp):
GAACTTATGAGCCCGTTCGTGA
Found at i:70164701 original size:12 final size:12
Alignment explanation
Indices: 70164671--70164727 Score: 53
Period size: 12 Copynumber: 4.5 Consensus size: 12
70164661 CTATATCTTT
70164671 TATTATAATATA
1 TATTATAATATA
*
70164683 TAATATAATA-A
1 TATTATAATATA
70164694 TAGTTATATATATTA
1 TA-TTATA-ATA-TA
*
70164709 TATTTATAAAATA
1 TA-TTATAATATA
70164722 TATTAT
1 TATTAT
70164728 TTCATCATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
11 3 0.08
12 17 0.46
13 7 0.19
14 2 0.05
15 8 0.22
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (12 bp):
TATTATAATATA
Found at i:70165162 original size:229 final size:227
Alignment explanation
Indices: 70164915--70165340 Score: 586
Period size: 229 Copynumber: 1.9 Consensus size: 227
70164905 ATAGTATATA
* * *
70164915 ATATATTTATAGTATATATATGCATCAATGATTGAACGTTATAATATCATGTAATACTATAT-TT
1 ATATATATATAGTATATATATGCATCAATGATTAAACATTATAATATCATGTAATACTATATATT
* * * *
70164979 TTAATTATAATCTATAATATAATAATAGCTATATATAATAGTAGTACATTATATAGTACTTATAA
66 TT-ATTATAATATATAATATAATAATAGCTATATAGAATAATAGTACATTATATA-T--TAATAA
* * * * * * *
70165044 TTATATATTATTGTTTATTATTATACTATTTGAAATGTGCCCCAAGTCTATATACTTTTTGTACA
127 TCATATATTATTGTTTATTATTATAATAATTAAAATATGCACCAAGTCCATATACTTTTTGTACA
70165109 TTTGAAAGAGTAAATTATAATATATTAATCATTTAC
192 TTTGAAAGAGTAAATTATAATATATTAATCATTTAC
* * *
70165145 ATATATATATA-TATATATATGCATCATTGATTAAATATTATAATATCATGTAATATTATATATT
1 ATATATATATAGTATATATATGCATCAATGATTAAACATTATAATATCATGTAATACTATATATT
* *
70165209 TTATTATAATATATAATATAATAATAGTTATATAGAATAATAGTACATTATATATTAATTATCAT
66 TTATTATAATATATAATATAATAATAGCTATATAGAATAATAGTACATTATATATTAATAATCAT
* *** *
70165274 GTATTATTGTTTATTATTATAATAATTAAAATATGCATTGAGTCCCTATACTTTTTGTACATTTG
131 ATATTATTGTTTATTATTATAATAATTAAAATATGCACCAAGTCCATATACTTTTTGTACATTTG
70165339 AA
196 AA
70165341 GGTTAATCCT
Statistics
Matches: 171, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
226 63 0.37
228 1 0.01
229 93 0.54
230 14 0.08
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.45
Consensus pattern (227 bp):
ATATATATATAGTATATATATGCATCAATGATTAAACATTATAATATCATGTAATACTATATATT
TTATTATAATATATAATATAATAATAGCTATATAGAATAATAGTACATTATATATTAATAATCAT
ATATTATTGTTTATTATTATAATAATTAAAATATGCACCAAGTCCATATACTTTTTGTACATTTG
AAAGAGTAAATTATAATATATTAATCATTTAC
Found at i:70165484 original size:156 final size:163
Alignment explanation
Indices: 70165219--70165554 Score: 395
Period size: 156 Copynumber: 2.1 Consensus size: 163
70165209 TTATTATAAT
*
70165219 ATATAATATAATAATAGTTATATAGAATAATAGTACATTATATATTAATTATCATGTATTATTGT
1 ATATAATATATTAATAGTTATATAGAATAATAGTACATTATATATTAATTATCA-GTATTATTGT
* * * * * *
70165284 TTATTATTATAATAATTAAAATATGCATTGAGTCCCTATACTTTTTGTACATTTGAAGGTTAATC
65 TTATTATTATAACAATTAAAATATGCATTAAATCCCTATACTTTTCGTACATTTGAAAGTTAACC
* *
70165349 CT-CATACTATATTATATAGTACTATATCATATC-
130 CTCCA-ACTATATTATATAATACTATATCACATCG
* *
70165382 ATATAATATATTAATAGTTATATATAATAGA-AGTACA-T-TATA-T-GTTA-CA-TATTATTGT
1 ATATAATATATTAATAGTTATATAGAATA-ATAGTACATTATATATTAATTATCAGTATTATTGT
* * * * *
70165440 TTATTATTATACCAATTGAAATATGC-TCTAAATTCTTATACTTTTCGTACATTTGAAAGTTAGC
65 TTATTATTATAACAATTAAAATATGCAT-TAAATCCCTATACTTTTCGTACATTTGAAAGTTAAC
*
70165504 CCTCCAACTATATTATATAATGCTATATCACATCG
129 CCTCCAACTATATTATATAATACTATATCACATCG
70165539 TATAATAATATATTAA
1 -AT-ATAATATATTAA
70165555 CGGTTTATAT
Statistics
Matches: 150, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
155 1 0.01
156 88 0.59
157 2 0.01
158 4 0.03
159 15 0.10
160 1 0.01
161 4 0.03
162 1 0.01
163 33 0.22
164 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.43
Consensus pattern (163 bp):
ATATAATATATTAATAGTTATATAGAATAATAGTACATTATATATTAATTATCAGTATTATTGTT
TATTATTATAACAATTAAAATATGCATTAAATCCCTATACTTTTCGTACATTTGAAAGTTAACCC
TCCAACTATATTATATAATACTATATCACATCG
Found at i:70165981 original size:16 final size:16
Alignment explanation
Indices: 70165960--70165990 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70165950 ATATATTACG
70165960 GACTCGAATGGATATA
1 GACTCGAATGGATATA
*
70165976 GACTCGAATTGATAT
1 GACTCGAATGGATAT
70165991 GTGCAGGCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (16 bp):
GACTCGAATGGATATA
Found at i:70170126 original size:23 final size:22
Alignment explanation
Indices: 70170076--70170118 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
70170066 TGTTTTGGTT
*
70170076 ATTTAA-TTTTAATTTATTATA
1 ATTTAACTATTAATTTATTATA
70170097 ATTTAACTATTAATATTATTAT
1 ATTTAACTATTAAT-TTATTAT
70170119 TTTGTAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 6 0.32
23 7 0.37
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTTAACTATTAATTTATTATA
Found at i:70171730 original size:25 final size:25
Alignment explanation
Indices: 70171696--70171745 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
70171686 ATGAAATTTA
70171696 ACTAGTTCATGAATATTAGGAGATG
1 ACTAGTTCATGAATATTAGGAGATG
70171721 ACTAGTTCATGAATATTAGGAGATG
1 ACTAGTTCATGAATATTAGGAGATG
70171746 TTATAAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (25 bp):
ACTAGTTCATGAATATTAGGAGATG
Found at i:70175223 original size:40 final size:40
Alignment explanation
Indices: 70174982--70175216 Score: 375
Period size: 40 Copynumber: 5.9 Consensus size: 40
70174972 GATGATAACG
* *
70174982 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
70175022 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
70175062 GGGCTAAGTCCCGAAGGCATTTGGGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
70175102 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
**
70175142 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
* *
70175182 GGGCTAAGTCCCGAAGGCATTTGAGCGAGTAACTA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
70175217 TATCCGGTTA
Statistics
Matches: 183, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 2 0.01
40 181 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:70180074 original size:21 final size:21
Alignment explanation
Indices: 70180050--70180097 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
70180040 GTCTGTGTAC
70180050 GATTTCTGACGATCTAACGCT
1 GATTTCTGACGATCTAACGCT
70180071 GATTTCTGACGATCTAACGCT
1 GATTTCTGACGATCTAACGCT
*
70180092 GCTTTC
1 GATTTC
70180098 AGACTTTCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (21 bp):
GATTTCTGACGATCTAACGCT
Found at i:70182938 original size:29 final size:27
Alignment explanation
Indices: 70182842--70182938 Score: 115
Period size: 28 Copynumber: 3.4 Consensus size: 27
70182832 AATAAGCCCA
70182842 CACACTTAGTGCT-TAATAGTCGAACTCG
1 CACACTTAGTGCTATAA-A-TCGAACTCG
*
70182870 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATA-AATCGAACTCG
* *
70182898 CACACTTAGTGCTATACAATTTGAACCCG
1 CACACTTAGTGCTATA-AA-TCGAACTCG
70182927 CACACTTAGTGC
1 CACACTTAGTGC
70182939 CAATCTCATG
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
28 39 0.64
29 21 0.34
30 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (27 bp):
CACACTTAGTGCTATAAATCGAACTCG
Found at i:70190145 original size:28 final size:29
Alignment explanation
Indices: 70190113--70190211 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
70190103 ATAATAAGCC
*
70190113 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
70190141 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
70190169 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
70190198 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70190212 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:70191474 original size:41 final size:41
Alignment explanation
Indices: 70191379--70191512 Score: 144
Period size: 41 Copynumber: 3.2 Consensus size: 41
70191369 TGTTCTCATA
* *
70191379 TAAGACCATGTCTGGACGTTGACATCGATATGTGATTACGTG
1 TAAGACCATGTCTGGACATTGGCATCGATATGTGA-TACGTG
* *
70191421 TAAGACCATGTCTGGGACATTGGCATC-ATATTTGATCCGTG
1 TAAGACCATGTCT-GGACATTGGCATCGATATGTGATACGTG
* * * * *
70191462 TAAGACCCTGTCTAGGATAGTGGCATCGATATGTGATTGCATG
1 TAAGACCATGTCT-GGACATTGGCATCGATATGTGA-TACGTG
70191505 TAAGACCA
1 TAAGACCA
70191513 CGTTTGGGAA
Statistics
Matches: 77, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
41 28 0.36
42 27 0.35
43 22 0.29
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (41 bp):
TAAGACCATGTCTGGACATTGGCATCGATATGTGATACGTG
Found at i:70191529 original size:43 final size:44
Alignment explanation
Indices: 70191379--70191530 Score: 149
Period size: 43 Copynumber: 3.6 Consensus size: 44
70191369 TGTTCTCATA
* *
70191379 TAAGACCATGTCT-GGAC-GTTGACATCGATATGTGATTACGTG
1 TAAGACCACGTCTGGGACAGTTGGCATCGATATGTGATTACGTG
* * *
70191421 TAAGACCATGTCTGGGACA-TTGGCATC-ATATTTGA-TCCGTG
1 TAAGACCACGTCTGGGACAGTTGGCATCGATATGTGATTACGTG
* * * *
70191462 TAAGACC-CTGTCTAGGATAG-TGGCATCGATATGTGATTGCATG
1 TAAGACCAC-GTCTGGGACAGTTGGCATCGATATGTGATTACGTG
*
70191505 TAAGACCACGTTTGGGA-AGTTGGCAT
1 TAAGACCACGTCTGGGACAGTTGGCAT
70191531 TGTACGATAT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
41 27 0.30
42 29 0.32
43 34 0.37
44 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (44 bp):
TAAGACCACGTCTGGGACAGTTGGCATCGATATGTGATTACGTG
Found at i:70201575 original size:41 final size:40
Alignment explanation
Indices: 70201523--70201602 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 40
70201513 CATGCTATCA
** *
70201523 CATATCGATGCCTCTGTCCCAGACAGGGTCTTATACGAAT
1 CATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAT
* *
70201563 CATATACGATGCCAATGTCCTAGACATGGTCTTACACGAA
1 CATAT-CGATGCCAATGTCCCAGACAGGGTCTTACACGAA
70201603 ATCACGTCTC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
40 5 0.15
41 29 0.85
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (40 bp):
CATATCGATGCCAATGTCCCAGACAGGGTCTTACACGAAT
Found at i:70212057 original size:42 final size:42
Alignment explanation
Indices: 70211997--70212261 Score: 336
Period size: 42 Copynumber: 6.3 Consensus size: 42
70211987 TATTTAGTAA
* *
70211997 AATATATATATCCAGGTTAAATCCCGCAAGCTTCGTGCTGGT
1 AATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
**
70212039 AATATATATATCCGGGTTAAATTTCGCAGGCTTCGTGCTGGT
1 AATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
* * * * *
70212081 AATATATATATCCGGGTTAAATTCTGCAGGCTTCATGGTAGTAAT
1 AATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCT-G--GT
* *
70212126 ATATATATATATCTGGGTTAAATCCCGCAGGCTTCGTGCTAGT
1 A-ATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
*
70212169 AATATATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGT
1 AATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
*** *
70212211 -A-ATATATATCCGGGTTAAATCCTATAGGCTTCGTGCTAGT
1 AATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
70212251 AATATATATAT
1 AATATATATAT
70212262 ATATCCGGGC
Statistics
Matches: 195, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
40 36 0.18
41 2 0.01
42 119 0.61
43 3 0.02
45 2 0.01
46 33 0.17
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (42 bp):
AATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
Found at i:70212289 original size:88 final size:84
Alignment explanation
Indices: 70211997--70212276 Score: 307
Period size: 88 Copynumber: 3.2 Consensus size: 84
70211987 TATTTAGTAA
* *
70211997 AATATATATATCCAGGTTAAATCCCGCAAGCTTCGTGCTGGTAATATATATATCCGGGTTAAAT-
1 AATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT-ATATATATATCCGGGTTAAATC
* *
70212061 TTCGCAGGCTTCGTGCT-GGT
65 CT-GCAGGCTTCGTGCTAGAT
* * * * * *
70212081 AATATATATATCCGGGTTAAATTCTGCAGGCTTCATGGTAGTAATATATATATATATCTGGGTTA
1 AATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCT-G----GTATATATATATCCGGGTTA
*
70212146 AATCCCGCAGGCTTCGTGCTAG-T
61 AATCCTGCAGGCTTCGTGCTAGAT
*
70212169 AATATATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTA-ATATATATCCGGGTTAAATCC
1 AATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATATATATATCCGGGTTAAATCC
**
70212233 TATAGGCTTCGTGCTAGTAAT
66 TGCAGGCTTCGTGCTAG--AT
70212254 ATATATATATATCCGGGCTTAAA
1 A-ATATATATATCCGGG-TTAAA
70212277 GTTTCGCAGG
Statistics
Matches: 164, Mismatches: 20, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
82 34 0.21
83 2 0.01
84 33 0.20
85 3 0.02
86 15 0.09
87 6 0.04
88 69 0.42
89 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (84 bp):
AATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATATATATATCCGGGTTAAATCC
TGCAGGCTTCGTGCTAGAT
Found at i:70212289 original size:130 final size:130
Alignment explanation
Indices: 70211991--70212276 Score: 427
Period size: 130 Copynumber: 2.2 Consensus size: 130
70211981 AGTCGATATT
* * *
70211991 TAGTAA-A-ATATATATATCCAGGTTAAATCCCGCAAGCTTCGTGCTGGTAATATATATATCCGG
1 TAGTAATATATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATATATATCCGG
** * * * *
70212054 GTTAAATTTCGCAGGCTTCGTGCTGGTAATATATATATCCGGGTTAAATTCTGCAGGCTTCATGG
66 GTTAAATCCCACAGGCTTCGTGCTGGTAATATATATATCCGGGTTAAATCCTACAGGCTTCATGC
*
70212119 TAGTAATATATATATATATCTGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATATATATCCGG
1 TAGTAATATATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATATATATCCGG
* *
70212184 GTTAAATCCCACAGGCTTCGTGCTGGT-A-ATATATATCCGGGTTAAATCCTATAGGCTTCGTGC
66 GTTAAATCCCACAGGCTTCGTGCTGGTAATATATATATCCGGGTTAAATCCTACAGGCTTCATGC
70212247 TAGTAATATATATATATATCCGGGCTTAAA
1 TAGTAATATATATATATATCCGGG-TTAAA
70212277 GTTTCGCAGG
Statistics
Matches: 142, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
128 59 0.42
129 7 0.05
130 76 0.54
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (130 bp):
TAGTAATATATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATATATATCCGG
GTTAAATCCCACAGGCTTCGTGCTGGTAATATATATATCCGGGTTAAATCCTACAGGCTTCATGC
Found at i:70220167 original size:42 final size:42
Alignment explanation
Indices: 70220118--70220368 Score: 326
Period size: 42 Copynumber: 5.9 Consensus size: 42
70220108 AGTAGATATA
*
70220118 TAGTAATATATATATCCAGGTTAAATCCCGCAGGCTTCGTGC
1 TAGTAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGC
* * **
70220160 TGGTAATATATATATCCGGTTTAAATTTCGCAGGCTTCGTGC
1 TAGTAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGC
* *
70220202 TAGTAATATATATATATCCGGGTTAAATCCCGCAGGCTTCATGG
1 TAGT-A-ATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGC
**
70220246 TAGTAATATATATATCCGGGTTAAATCCTACAGGCTTCGTGC
1 TAGTAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGC
* *
70220288 TGGT-A-ATATATATCCGGGTTAAATCCCGCAAGCTTCGTGC
1 TAGTAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGC
*
70220328 TAGTAATATATATATTTCCGGGCTTAAAGTTCCGCAGGCTT
1 TAGTAATATATATA--TCCGGG-TTAAA-TCCCGCAGGCTT
70220369 TGTGTTAGCG
Statistics
Matches: 179, Mismatches: 22, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
40 35 0.20
41 2 0.01
42 83 0.46
43 2 0.01
44 42 0.23
45 5 0.03
46 10 0.06
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (42 bp):
TAGTAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGC
Found at i:70220260 original size:128 final size:128
Alignment explanation
Indices: 70220118--70220368 Score: 389
Period size: 128 Copynumber: 2.0 Consensus size: 128
70220108 AGTAGATATA
* *
70220118 TAGTAATATATATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATATATCCGGTTTA
1 TAGTAATATATATATCCAGGTTAAATCCCACAGGCTTCGTGCTGGT-A-ATATATATCCGGGTTA
** *
70220183 AATTTCGCAGGCTTCGTGCTAGTAATATATATATATCCGGG-TTAAA-TCCCGCAGGCTTCATGG
64 AATCCCGCAAGCTTCGTGCTAGTAATATATATATATCCGGGCTTAAAGTCCCGCAGGCTTCATGG
* *
70220246 TAGTAATATATATATCCGGGTTAAATCCTACAGGCTTCGTGCTGGTAATATATATCCGGGTTAAA
1 TAGTAATATATATATCCAGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATATCCGGGTTAAA
* *
70220311 TCCCGCAAGCTTCGTGCTAGTAATATATATATTTCCGGGCTTAAAGTTCCGCAGGCTT
66 TCCCGCAAGCTTCGTGCTAGTAATATATATATATCCGGGCTTAAAGTCCCGCAGGCTT
70220369 TGTGTTAGCG
Statistics
Matches: 112, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
126 52 0.46
127 6 0.05
128 54 0.48
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (128 bp):
TAGTAATATATATATCCAGGTTAAATCCCACAGGCTTCGTGCTGGTAATATATATCCGGGTTAAA
TCCCGCAAGCTTCGTGCTAGTAATATATATATATCCGGGCTTAAAGTCCCGCAGGCTTCATGG
Found at i:70220366 original size:86 final size:85
Alignment explanation
Indices: 70220123--70220368 Score: 329
Period size: 86 Copynumber: 2.9 Consensus size: 85
70220113 ATATATAGTA
* * * *
70220123 ATATATATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATATATCCGGTTTAAATTT
1 ATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATATATATCCGGGTTAAATTC
70220188 CGCAGGCTTCGTGCTAGTAAT
66 CGCAGGCTTCGTGCTAG-AAT
* *
70220209 ATATATATATCCGGGTTAAATCCCGCAGGCTTCATGGTAGTAATATATATATCCGGGTTAAA-TC
1 ATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATATATATCCGGGTTAAATTC
* *
70220273 CTACAGGCTTCGTGCT-G-GT
66 C-GCAGGCTTCGTGCTAGAAT
*
70220292 A-ATATATATCCGGGTTAAATCCCGCAAGCTTCGTGCTAGTAATATATATATTTCCGGGCTTAAA
1 ATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATATATA--TCCGGG-TTAAA
70220356 GTTCCGCAGGCTT
63 -TTCCGCAGGCTT
70220369 TGTGTTAGCG
Statistics
Matches: 142, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
82 46 0.32
83 2 0.01
84 6 0.04
85 8 0.06
86 77 0.54
87 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (85 bp):
ATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATATATATATCCGGGTTAAATTC
CGCAGGCTTCGTGCTAGAAT
Found at i:70229299 original size:6 final size:6
Alignment explanation
Indices: 70229288--70229319 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
70229278 CCAACTCTCC
70229288 ATTCAA ATTC-A ATTCAA ATTC-A ATTCAA ATTC
1 ATTCAA ATTCAA ATTCAA ATTCAA ATTCAA ATTC
70229320 TTATGACCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.42
6 14 0.58
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (6 bp):
ATTCAA
Found at i:70229304 original size:11 final size:11
Alignment explanation
Indices: 70229288--70229319 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
70229278 CCAACTCTCC
70229288 ATTCAAATTCA
1 ATTCAAATTCA
70229299 ATTCAAATTCA
1 ATTCAAATTCA
70229310 ATTCAAATTC
1 ATTCAAATTC
70229320 TTATGACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (11 bp):
ATTCAAATTCA
Found at i:70235295 original size:40 final size:40
Alignment explanation
Indices: 70235240--70235428 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
70235230 TGCTTTCAAA
* **
70235240 GGTACCGAAATACAAACAGGGGCATGTATGTGCATTTAGG
1 GGTACCGAAGTACAAACAGGGGCACATATGTGCATTTAGG
* * * *
70235280 GGTACCGAAGTACAAATAAGGGCACGTATGTGCATTTAGA
1 GGTACCGAAGTACAAACAGGGGCACATATGTGCATTTAGG
* * * * *
70235320 GGTGCCAAAGTACAAGCAGAGGCACATGTGTGCATTTAGG
1 GGTACCGAAGTACAAACAGGGGCACATATGTGCATTTAGG
* * * * *
70235360 GGTATCGAAGTATAAACAGGGGTACATATGTGCATTCAAG
1 GGTACCGAAGTACAAACAGGGGCACATATGTGCATTTAGG
70235400 GGTACCGAAGTACAAACAGGGGCACATAT
1 GGTACCGAAGTACAAACAGGGGCACATAT
70235429 ATATAAATGA
Statistics
Matches: 122, Mismatches: 27, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 122 1.00
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (40 bp):
GGTACCGAAGTACAAACAGGGGCACATATGTGCATTTAGG
Found at i:70244461 original size:34 final size:34
Alignment explanation
Indices: 70244387--70244450 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
70244377 TTAGTTTATG
*
70244387 TTTGCATCTTTCAATTAATATCTTGCATTATTAA
1 TTTGCATCTTTAAATTAATATCTTGCATTATTAA
*
70244421 TCTGCATCTTTAAATT-ATGA-CTTGCATTAT
1 TTTGCATCTTTAAATTAAT-ATCTTGCATTAT
70244451 GTGTTTTGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 12 0.44
34 15 0.56
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (34 bp):
TTTGCATCTTTAAATTAATATCTTGCATTATTAA
Found at i:70246939 original size:22 final size:22
Alignment explanation
Indices: 70246914--70246957 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
70246904 TTTAAGGAGG
70246914 ATTAGCTACCGATTAACCAATT
1 ATTAGCTACCGATTAACCAATT
*
70246936 ATTAGCTATCGATTAACCAATT
1 ATTAGCTACCGATTAACCAATT
70246958 GTTACCTCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.34
Consensus pattern (22 bp):
ATTAGCTACCGATTAACCAATT
Found at i:70248428 original size:25 final size:25
Alignment explanation
Indices: 70248400--70248475 Score: 100
Period size: 25 Copynumber: 3.0 Consensus size: 25
70248390 TGTAGCTACG
*
70248400 TTTTGACTCACAGCTCATGTAAGCA
1 TTTTGATTCACAGCTCATGTAAGCA
70248425 TTTTGATTCACAGCTCATGTGAA-CA
1 TTTTGATTCACAGCTCATGT-AAGCA
* * *
70248450 TTCTGATTCACAGCTCGTGTGAGCA
1 TTTTGATTCACAGCTCATGTAAGCA
70248475 T
1 T
70248476 ACATATACAG
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
24 1 0.02
25 42 0.93
26 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (25 bp):
TTTTGATTCACAGCTCATGTAAGCA
Found at i:70254394 original size:18 final size:18
Alignment explanation
Indices: 70254371--70254408 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
70254361 GGATAGGTTA
70254371 GTAAGGAAGGGCATTTTG
1 GTAAGGAAGGGCATTTTG
70254389 GTAAGGAAGGGCATTTTG
1 GTAAGGAAGGGCATTTTG
70254407 GT
1 GT
70254409 CATTTGGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.05, G:0.39, T:0.29
Consensus pattern (18 bp):
GTAAGGAAGGGCATTTTG
Found at i:70255614 original size:24 final size:24
Alignment explanation
Indices: 70255581--70255654 Score: 103
Period size: 24 Copynumber: 3.1 Consensus size: 24
70255571 AAGTCTGTCT
* *
70255581 GGAGAAGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
70255605 GGAGAGGATTTAGGAGCTAATCAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
70255629 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
70255653 GG
1 GG
70255655 TGAACTGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.32, C:0.04, G:0.41, T:0.23
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:70257124 original size:27 final size:27
Alignment explanation
Indices: 70257086--70257195 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
70257076 GAAGCGTCCC
* *
70257086 GGTGGCTATGCCACAATTATTTGATCT
1 GGTGGCTCTGCCACAATTATCTGATCT
*
70257113 GGTGGCTCTGCCACATATT-TCTGTTCT
1 GGTGGCTCTGCCACA-ATTATCTGATCT
*
70257140 GGTGGCTCTGCCACGATTATCTGTATCT
1 GGTGGCTCTGCCACAATTATCTG-ATCT
* * *
70257168 GGTGACTCTGTCAC-ATTATCTGTTCT
1 GGTGGCTCTGCCACAATTATCTGATCT
70257194 GG
1 GG
70257196 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 46 0.64
28 18 0.25
ACGTcount: A:0.15, C:0.23, G:0.24, T:0.38
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATTATCTGATCT
Found at i:70257190 original size:54 final size:54
Alignment explanation
Indices: 70257086--70257195 Score: 150
Period size: 54 Copynumber: 2.0 Consensus size: 54
70257076 GAAGCGTCCC
* * *
70257086 GGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATTTCTGTTCT
1 GGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCT
* * *
70257140 GGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCT
1 GGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTCT
70257194 GG
1 GG
70257196 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
54 31 0.63
55 18 0.37
ACGTcount: A:0.15, C:0.23, G:0.24, T:0.38
Consensus pattern (54 bp):
GGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCT
Found at i:70260973 original size:47 final size:47
Alignment explanation
Indices: 70260793--70260997 Score: 190
Period size: 46 Copynumber: 4.4 Consensus size: 47
70260783 TTATGAGAGT
* * **
70260793 CAGTGTAAGACCATGTTTGGGACATGGCATCGGTA-TTGAGATGAGGGC
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGG-ACTCGAGATGATAGC
* * * *
70260841 TAGTGTAAGA-TATGTCTGGGACATGCATCGGCCTCGAGA-CATAAGC
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGACTCGAGATGAT-AGC
* * *
70260887 CAATGTAAGA-CATGTCTTGGACATGCATC-GACTACGAGATGATAGT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGACT-CGAGATGATAGC
*
70260933 CAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGAT-ATGAGC
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGACTCGAGATGAT-AGC
*
70260980 CAGTGTAAGACCGTGTCT
1 CAGTGTAAGACCATGTCT
70260998 AGAACAGGGT
Statistics
Matches: 130, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
45 4 0.03
46 57 0.44
47 51 0.39
48 18 0.14
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCGGACTCGAGATGATAGC
Found at i:70263155 original size:28 final size:28
Alignment explanation
Indices: 70263124--70263217 Score: 91
Period size: 28 Copynumber: 3.4 Consensus size: 28
70263114 TGGAAAGTAG
*
70263124 TTGGGCCTAATGGGCCATATGAATGTGG
1 TTGGGCCTAATGGGCCATATGAATGTGA
** * *
70263152 TTGGG-CTGGTTGGGCTATATAAATGTGA
1 TTGGGCCT-AATGGGCCATATGAATGTGA
* * * *
70263180 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTAATGGGCCATATGAATGTGA
70263208 TTGGGCCTAA
1 TTGGGCCTAA
70263218 AATGGCTAAA
Statistics
Matches: 52, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
27 2 0.04
28 48 0.92
29 2 0.04
ACGTcount: A:0.21, C:0.14, G:0.36, T:0.29
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATGTGA
Found at i:70263562 original size:27 final size:27
Alignment explanation
Indices: 70263541--70263789 Score: 267
Period size: 27 Copynumber: 9.3 Consensus size: 27
70263531 GAAATTACTA
70263541 AAATACCCTCGATTTGTAAAATTA-CTG
1 AAATACCCTCGATTTGTAAAATTATC-G
* *
70263568 AAGTACCC-CTAGTTTGTAAAATTATCG
1 AAATACCCTCGA-TTTGTAAAATTATCG
** * * *
70263595 AAGCACCC-CTATTTATAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTATCG
70263621 AAATACCC-CTGATTTGTAAAATTATCG
1 AAATACCCTC-GATTTGTAAAATTATCG
* * *
70263648 AAACACCCTTGATTTGTAAAATTATCA
1 AAATACCCTCGATTTGTAAAATTATCG
*
70263675 AAATACCCTCTATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCG
70263702 AAATACCCTCGATTTGTAAAATTA-CTG
1 AAATACCCTCGATTTGTAAAATTATC-G
* *
70263729 AAACACCCCCGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTATCG
* * *
70263756 AAATACCCTTG-TAGTGTAAAATTATCA
1 AAATACCCTCGAT-TTGTAAAATTATCG
70263783 AAATACC
1 AAATACC
70263790 TTTGTAGTGT
Statistics
Matches: 190, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
26 24 0.13
27 164 0.86
28 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTATCG
Found at i:70263716 original size:81 final size:81
Alignment explanation
Indices: 70263541--70263789 Score: 312
Period size: 81 Copynumber: 3.1 Consensus size: 81
70263531 GAAATTACTA
**
70263541 AAATACCCTCGATTTGTAAAATTACTGAAGTAC-CCCTAG-TTTGTAAAATTATCGAAGCACCC-
1 AAATACCCTCGATTTGTAAAATTACTGAA--ACACCCTAGATTTGTAAAATTATCGAAATACCCT
* *
70263603 CTATTTATAAAATTACCG
64 CTATTTGTAAAATTATCG
* *
70263621 AAATACCC-CTGATTTGTAAAATTA-TCGAAACACCCTTGATTTGTAAAATTATCAAAATACCCT
1 AAATACCCTC-GATTTGTAAAATTACT-GAAACACCCTAGATTTGTAAAATTATCGAAATACCCT
70263684 CTATTTGTAAAATTATCG
64 CTATTTGTAAAATTATCG
**
70263702 AAATACCCTCGATTTGTAAAATTACTGAAACACCCCCGATTTGTAAAATTATCGAAATACCCT-T
1 AAATACCCTCGATTTGTAAAATTACTGAAACACCCTAGATTTGTAAAATTATCGAAATACCCTCT
* * *
70263766 GTAGTGTAAAATTATCA
66 AT-TTGTAAAATTATCG
70263783 AAATACC
1 AAATACC
70263790 TTTGTAGTGT
Statistics
Matches: 149, Mismatches: 12, Indels: 15
0.85 0.07 0.09
Matches are distributed among these distances:
78 2 0.01
79 7 0.05
80 47 0.32
81 91 0.61
82 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (81 bp):
AAATACCCTCGATTTGTAAAATTACTGAAACACCCTAGATTTGTAAAATTATCGAAATACCCTCT
ATTTGTAAAATTATCG
Found at i:70263815 original size:27 final size:27
Alignment explanation
Indices: 70263743--70263834 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
70263733 ACCCCCGATT
* *
70263743 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
* * * *
70263770 TGTAAAATTATCAAAATACCTTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
* *
70263797 TGTAAAATGACCGACATACCCCTGTAAG
1 TGTAAAATGACCGAAATACCCTTGT-AG
70263825 -GTAAAATGAC
1 TGTAAAATGAC
70263835 TGTTTTGCCC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 54 0.96
28 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.29
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTGTAG
Found at i:70266482 original size:8 final size:8
Alignment explanation
Indices: 70266440--70266464 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
70266430 ATATAGACTA
70266440 AATAAAAT
1 AATAAAAT
70266448 AATAAAAT
1 AATAAAAT
70266456 AATAAAAT
1 AATAAAAT
70266464 A
1 A
70266465 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:70266488 original size:29 final size:31
Alignment explanation
Indices: 70266437--70266509 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 31
70266427 CATATATAGA
*
70266437 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAATAATTAT
* *
70266466 CTTATTAAAAT-ATTAAATAAATAATAATTAT
1 CTAATTAAAATAATAAAAT-AATAATAATTAT
70266497 CTAATT-AAATAAT
1 CTAATTAAAATAAT
70266510 TATAAAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
28 6 0.17
29 14 0.39
30 6 0.17
31 10 0.28
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAATAATTAT
Found at i:70266514 original size:29 final size:30
Alignment explanation
Indices: 70266444--70266515 Score: 71
Period size: 31 Copynumber: 2.4 Consensus size: 30
70266434 AGACTAAATA
*
70266444 AAATAA-TA-AAATAATAAAATATCTTATT
1 AAATAATTATAAATAATAAAATATCTAATT
*
70266472 AAA-ATATTAAATAAATAAT-AATTATCTAATT
1 AAATA-ATT--ATAAATAATAAAATATCTAATT
70266503 AAATAATTATAAA
1 AAATAATTATAAA
70266516 ATATTACCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
27 1 0.03
28 4 0.11
29 6 0.17
31 17 0.47
32 8 0.22
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (30 bp):
AAATAATTATAAATAATAAAATATCTAATT
Found at i:70269580 original size:25 final size:25
Alignment explanation
Indices: 70269550--70269604 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
70269540 TTTTCATTCC
*
70269550 TATTCTTTGTTTCTTCTTGCTACCA
1 TATTCTCTGTTTCTTCTTGCTACCA
70269575 TATTCTCTGTTTCTTCTTGCTACCA
1 TATTCTCTGTTTCTTCTTGCTACCA
70269600 TATTC
1 TATTC
70269605 ATAGTTTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.13, C:0.25, G:0.07, T:0.55
Consensus pattern (25 bp):
TATTCTCTGTTTCTTCTTGCTACCA
Found at i:70269663 original size:19 final size:19
Alignment explanation
Indices: 70269636--70269691 Score: 94
Period size: 19 Copynumber: 2.9 Consensus size: 19
70269626 TGTATGTAAA
* *
70269636 TGGTGGGCACCTAAATGTT
1 TGGTAGGCACCCAAATGTT
70269655 TGGTAGGCACCCAAATGTT
1 TGGTAGGCACCCAAATGTT
70269674 TGGTAGGCACCCAAATGT
1 TGGTAGGCACCCAAATGT
70269692 ATGTAAATGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (19 bp):
TGGTAGGCACCCAAATGTT
Found at i:70271837 original size:39 final size:40
Alignment explanation
Indices: 70271794--70271891 Score: 108
Period size: 46 Copynumber: 2.3 Consensus size: 40
70271784 TATTGAATGC
*
70271794 ATACTTTCAATTTACTAA-AATAATAGATGAGTCCGAGAG
1 ATACTTTCAATTTACCAATAATAATAGATGAGTCCGAGAG
**
70271833 ATACTTTCAATTTTTTACCAATCTTTCTAATAGATGAGTCCGAGAG
1 ATACTTTCAA---TTTACCAA---TAATAATAGATGAGTCCGAGAG
70271879 ATACTTTCAATTT
1 ATACTTTCAATTT
70271892 TTTACTAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
39 10 0.20
42 7 0.14
43 3 0.06
46 29 0.59
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (40 bp):
ATACTTTCAATTTACCAATAATAATAGATGAGTCCGAGAG
Found at i:70274200 original size:32 final size:32
Alignment explanation
Indices: 70274164--70274322 Score: 257
Period size: 32 Copynumber: 5.0 Consensus size: 32
70274154 TATAACTATG
70274164 CTACTTTTTTATATGTAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
70274196 CTACTTTTTCATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
* *
70274228 CTACTTTTTTATATGTGAACCTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
*
70274260 CTACTTTTTTATATG-CAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
*
70274291 CTACTTTTTTATATGTAAACCTAATGTATGAT
1 CTACTTTTTTATATGTAAAACTAATGTATGAT
70274323 ATTTTTTATG
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
31 29 0.25
32 87 0.75
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (32 bp):
CTACTTTTTTATATGTAAAACTAATGTATGAT
Found at i:70274291 original size:63 final size:64
Alignment explanation
Indices: 70274164--70274322 Score: 284
Period size: 63 Copynumber: 2.5 Consensus size: 64
70274154 TATAACTATG
*
70274164 CTACTTTTTTATATGTAAAACTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGAT
1 CTACTTTTTTATATGTAAACCTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGAT
* *
70274228 CTACTTTTTTATATGTGAACCTAATGTATGATCTACTTTTTTATATGC-AAACTAATGTATGAT
1 CTACTTTTTTATATGTAAACCTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGAT
70274291 CTACTTTTTTATATGTAAACCTAATGTATGAT
1 CTACTTTTTTATATGTAAACCTAATGTATGAT
70274323 ATTTTTTATG
Statistics
Matches: 91, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
63 46 0.51
64 45 0.49
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (64 bp):
CTACTTTTTTATATGTAAACCTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGAT
Found at i:70276341 original size:21 final size:21
Alignment explanation
Indices: 70276315--70276367 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
70276305 CGCTGTTTCT
* *
70276315 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAATAACC
*
70276336 AATCTCACCGCTACAATAACT
1 AATCTCACCGCTACAATAACC
70276357 AATCTCACCGC
1 AATCTCACCGC
70276368 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.32, C:0.38, G:0.08, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:70279912 original size:20 final size:20
Alignment explanation
Indices: 70279887--70279929 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
70279877 AAGTCTTCAA
*
70279887 AAAT-AAATAGAAATAAAAGT
1 AAATAAAATA-AAATAAAAAT
70279907 AAATAAAATAAAATAAAAAT
1 AAATAAAATAAAATAAAAAT
70279927 AAA
1 AAA
70279930 ACGAGTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.19
Consensus pattern (20 bp):
AAATAAAATAAAATAAAAAT
Found at i:70287525 original size:28 final size:28
Alignment explanation
Indices: 70287485--70287551 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
70287475 CACACAAGCT
*
70287485 AGGACACAGGCGTGTCATGGCCGTGTGA
1 AGGACACGGGCGTGTCATGGCCGTGTGA
*
70287513 AGGACACGGGCGTGTCATGGCCTTGTGA
1 AGGACACGGGCGTGTCATGGCCGTGTGA
70287541 AGGACACGGGC
1 AGGACACGGGC
70287552 ATGTGCCAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.21, C:0.22, G:0.40, T:0.16
Consensus pattern (28 bp):
AGGACACGGGCGTGTCATGGCCGTGTGA
Found at i:70289076 original size:28 final size:28
Alignment explanation
Indices: 70289045--70289099 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
70289035 TTGATGTTAT
70289045 TGTCGTTTGATGTGTTTTTGGGCATGGA
1 TGTCGTTTGATGTGTTTTTGGGCATGGA
70289073 TGTCGTTTGATGTGTTTTTGGGCATGG
1 TGTCGTTTGATGTGTTTTTGGGCATGG
70289100 GTTGGCTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.09, C:0.07, G:0.36, T:0.47
Consensus pattern (28 bp):
TGTCGTTTGATGTGTTTTTGGGCATGGA
Found at i:70291735 original size:97 final size:97
Alignment explanation
Indices: 70291619--70291815 Score: 376
Period size: 97 Copynumber: 2.0 Consensus size: 97
70291609 TGTATGCAAG
70291619 AAATGAGCAACCTTACCATGCATATAACATCTATATATTATAACATAATTGAATGTAAATTTACC
1 AAATGAGCAACCTTACCATGCATATAACATCTATATATTATAACATAATTGAATGTAAATTTACC
*
70291684 ATAGTCTCATGATTATAATTCATTCCATCACT
66 ATAGTCTCATGATTATAATTCATTCCACCACT
70291716 AAATGAGCAACCTTACCATGCATATAACATCTATATATTATAACATAATTGAATGTAAATTTACC
1 AAATGAGCAACCTTACCATGCATATAACATCTATATATTATAACATAATTGAATGTAAATTTACC
*
70291781 ATAGTCTCATGATTATAATTCGTTCCACCACT
66 ATAGTCTCATGATTATAATTCATTCCACCACT
70291813 AAA
1 AAA
70291816 CTTACATCAT
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 98 1.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.34
Consensus pattern (97 bp):
AAATGAGCAACCTTACCATGCATATAACATCTATATATTATAACATAATTGAATGTAAATTTACC
ATAGTCTCATGATTATAATTCATTCCACCACT
Found at i:70298360 original size:2 final size:2
Alignment explanation
Indices: 70298353--70298387 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
70298343 GTTGTAAGCT
70298353 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70298388 GCATGCATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:70299569 original size:26 final size:26
Alignment explanation
Indices: 70299540--70299647 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
70299530 TGGTACAAAT
70299540 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
70299566 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
70299592 TGATAATGGGTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
70299618 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70299644 TGAT
1 TGAT
70299648 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70306595 original size:26 final size:26
Alignment explanation
Indices: 70306566--70306673 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
70306556 TGGTACAAAT
70306566 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
70306592 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70306618 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
70306644 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
70306670 TGAT
1 TGAT
70306674 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:70313365 original size:19 final size:21
Alignment explanation
Indices: 70313328--70313366 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
70313318 TAAAATTATT
*
70313328 TTATACTATTTTATAATTTTG
1 TTATACTATTTAATAATTTTG
70313349 TTAT-CTATTTAAT-ATTTT
1 TTATACTATTTAATAATTTT
70313367 AACAATGCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (21 bp):
TTATACTATTTAATAATTTTG
Found at i:70324214 original size:6 final size:6
Alignment explanation
Indices: 70324206--70324255 Score: 82
Period size: 6 Copynumber: 8.3 Consensus size: 6
70324196 AAATAAGAGA
* *
70324206 AGAAGA AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAGGG
1 AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG
70324254 AG
1 AG
70324256 GGGAAAAAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (6 bp):
AGAAGG
Found at i:70324744 original size:27 final size:27
Alignment explanation
Indices: 70324714--70324767 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
70324704 TTGGTAAAAG
*
70324714 ATGAGAACATTGA-TATGGAATTTATGA
1 ATGAGAACATTAAGT-TGGAATTTATGA
*
70324741 ATGAGACCATTAAGTTGGAATTTATGA
1 ATGAGAACATTAAGTTGGAATTTATGA
70324768 GATAAATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (27 bp):
ATGAGAACATTAAGTTGGAATTTATGA
Found at i:70328606 original size:119 final size:120
Alignment explanation
Indices: 70328400--70328622 Score: 310
Period size: 119 Copynumber: 1.9 Consensus size: 120
70328390 TACTCGTTCA
*
70328400 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * * *
70328465 TTAGTGACTCGCACAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* **
70328520 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
70328582 ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
70328623 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 4 0.04
119 67 0.74
120 20 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:70328622 original size:40 final size:40
Alignment explanation
Indices: 70328379--70328622 Score: 291
Period size: 40 Copynumber: 6.1 Consensus size: 40
70328369 CGGAATTTAA
** *
70328379 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70328419 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
70328459 CCGGATTTAGTGACTCGCACAAATGCCTTTGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70328499 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
70328538 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
70328578 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
70328618 CCGGA
1 CCGGA
70328623 CATCATTCGA
Statistics
Matches: 178, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.19
40 131 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:70337555 original size:46 final size:46
Alignment explanation
Indices: 70337505--70337680 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
70337495 TGGTTGAGCA
*
70337505 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
* *
70337551 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAA-T--G
*
70337596 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
* * *
70337644 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70337681 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 63 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
Found at i:70337661 original size:93 final size:93
Alignment explanation
Indices: 70337502--70337673 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
70337492 GGATGGTTGA
* *
70337502 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70337567 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
70337595 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70337660 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
70337674 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70339436 original size:39 final size:40
Alignment explanation
Indices: 70339271--70339495 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
70339261 GCTACTCGTT
* *
70339271 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
70339311 CAAATGCCTTCGGGACTTAACCAGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
70339351 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
70339391 CCAATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
70339430 CAAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
70339471 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
70339496 CATCATTCGA
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 113 0.71
41 13 0.08
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:70339479 original size:79 final size:79
Alignment explanation
Indices: 70339271--70339493 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 79
70339261 GCTACTCGTT
* * * * * * *
70339271 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCAGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGA
* *
70339336 ATTTAGTGACTCGCA
65 AATTAGTAACTCGCA
* * *
70339351 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGA
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGA
70339415 AATTAGTAACTCGCA
65 AATTAGTAACTCGCA
** * *
70339430 CAAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCG
70339494 GACATCATTC
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
78 3 0.02
79 58 0.48
80 58 0.48
81 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGAA
ATTAGTAACTCGCA
Found at i:70339479 original size:119 final size:120
Alignment explanation
Indices: 70339273--70339495 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
70339263 TACTCGTTCA
**
70339273 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCAGGAT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCAGGAT
* * *
70339338 TTAGTGACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* ** *
70339393 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCTGG
1 AATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCAGG
*
70339455 ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
70339496 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCAGGAT
ATAGTCACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:70341638 original size:14 final size:14
Alignment explanation
Indices: 70341619--70341645 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70341609 GAACAAACTT
70341619 TGTAATATAAATTC
1 TGTAATATAAATTC
70341633 TGTAATATAAATT
1 TGTAATATAAATT
70341646 AAATACATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.44
Consensus pattern (14 bp):
TGTAATATAAATTC
Found at i:70341753 original size:62 final size:62
Alignment explanation
Indices: 70341588--70341878 Score: 494
Period size: 62 Copynumber: 4.7 Consensus size: 62
70341578 TAGCATTACA
* * * * * *
70341588 ACATTAAAACACTGAAACTTGGAACAAACTTTGTAATATAAATTCTGTAATATAAATTAAAT
1 ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAAT
*
70341650 ACATTACAACA-TAAAAATTGGAACAAACTTTGTAATATAAATTTTCTTATATAAATTAAAT
1 ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAAT
*
70341711 ACATTACAACATTAAAAATTGGAACAAAATTTGTAATATAAATTTTGTTATATAAATTAAAT
1 ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAAT
*
70341773 ACATTACAACATTAAAAATTGGAACAAACTTTGTAACATAAATTTTGTTATATAAATTAAAT
1 ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAAT
70341835 ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATT
1 ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATT
70341879 AGGTACATTG
Statistics
Matches: 217, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
61 56 0.26
62 161 0.74
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.35
Consensus pattern (62 bp):
ACATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTTATATAAATTAAAT
Found at i:70345140 original size:27 final size:27
Alignment explanation
Indices: 70345077--70345149 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
70345067 TATGCTAGGT
*
70345077 GTGCCGCCTATCAAATAGGCACCATCA
1 GTGCCGCCTATCAAATAGGCACCACCA
* * *
70345104 ATGACGCCTATCAAATAGGCATCACCA
1 GTGCCGCCTATCAAATAGGCACCACCA
* *
70345131 GTGCCACCTATCAGATAGG
1 GTGCCGCCTATCAAATAGG
70345150 GGTTACTGGT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (27 bp):
GTGCCGCCTATCAAATAGGCACCACCA
Found at i:70347922 original size:2 final size:2
Alignment explanation
Indices: 70347915--70347943 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
70347905 CACATTTGTT
70347915 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70347944 TATTACACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70352050 original size:92 final size:93
Alignment explanation
Indices: 70351931--70352286 Score: 271
Period size: 92 Copynumber: 3.8 Consensus size: 93
70351921 TGATTTGTGC
* * * *
70351931 GCTAGTGTAAGACATGTCTGGGGCATGCTTCGGCCACATTATGAAAGCCAGTGTAAAACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACACTATGAAAGCCAGTGTAAAACCATGTC
*
70351996 TAGGACATGGCA-GGCATC-CAGACGAGG
66 TAGGACATGGCACGGCA-CACAGACAAGG
** * * *
70352023 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATGCTATGATAGCCAGTTTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACACTATGAAAGCCAGTGTAAAACCATGTC
* * * *
70352088 TGGGACATGGCATCGGCACAGAGATAAGT
66 TAGGACATGGCA-CGGCACACAGACAAGG
* * * * *
70352117 GCCAGTGTAAGATATGTCTGGGACATGCATCAGCCTCGAC-A-GAGATAGCCAGTGTAAGA-CGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ACTATGA-A-AGCCAGTGTAAAACCAT
* * * * *** *
70352179 GTCTGGGACA-CGCATTGGC-TA-AGAGTTGT
63 GTCTAGGACATGGCA-CGGCACACAGACAAGG
* * * *
70352208 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-TACGCGTATATGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAC---TATGAAAGCCAGTGTAAAACCAT
* *
70352272 GTATGGGACATGGCA
63 GTCTAGGACATGGCA
70352287 TCAGCAATAT
Statistics
Matches: 214, Mismatches: 37, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
89 1 0.00
90 1 0.00
91 36 0.17
92 81 0.38
93 22 0.10
94 60 0.28
95 13 0.06
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACACTATGAAAGCCAGTGTAAAACCATGTC
TAGGACATGGCACGGCACACAGACAAGG
Found at i:70352088 original size:47 final size:46
Alignment explanation
Indices: 70351934--70352291 Score: 216
Period size: 47 Copynumber: 7.7 Consensus size: 46
70351924 TTTGTGCGCT
* * * * *
70351934 AGTGTAAGACATGTCTGGGGCATGCTTCGGCCA-CATTATGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATGA-TATGATAGCC
* * * * * ** *
70351980 AGTGTAAAACCATGTCTAGGACATGGCAGGCATCCA-G--ACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCA-TCAGCCATGATATGATAGCC
*
70352026 AGTGTAAGACATGTCTGGGACATGCATCAGCCATGCTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATGATATGATAGCC
* * * *
70352072 AGTTTAAGACCATGTCTGGGACATGGCATCGGCACA-GAGATAAGT-GCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CATGATATGA-TAGCC
* * *
70352120 AGTGTAAGATATGTCTGGGACATGCATCAGCC-TCGACAGAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT-GATA-TGATAGCC
* * ** * * *
70352167 AGTGTAAGACGTGTCTGGGACACGCATTGGCTAAGAGT-TG-T-GCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATGA-TATGATAGCC
* *
70352211 AGTGTAAGACATGTCTGGGACATGCATCAGTACGCGT-ATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATGATATGATAGCC
*
70352259 AGTGTAAGACCATGTATGGGACATGGCATCAGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
70352292 AATATATCCC
Statistics
Matches: 237, Mismatches: 51, Indels: 46
0.71 0.15 0.14
Matches are distributed among these distances:
43 5 0.02
44 32 0.14
45 16 0.07
46 50 0.21
47 71 0.30
48 36 0.15
49 20 0.08
50 7 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATGATATGATAGCC
Found at i:70356752 original size:13 final size:13
Alignment explanation
Indices: 70356730--70356762 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
70356720 AAGGGTTTGT
70356730 TTAT-TAAACTAA
1 TTATCTAAACTAA
70356742 TTATCTAAACTAA
1 TTATCTAAACTAA
*
70356755 TTAACTAA
1 TTATCTAA
70356763 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:70361073 original size:94 final size:91
Alignment explanation
Indices: 70360912--70361271 Score: 308
Period size: 94 Copynumber: 3.8 Consensus size: 91
70360902 TGATTTGTGC
* *
70360912 GCTAGTGTAAGACATGTCTGGGACATGCTTCTGCTACAT--TATGAGAGCCAATGTAAGACCATG
1 GCTAGTGTAAGACATGTCT-GGACATGCTT-AGC--CATGCTATGAGAGCCAGTGTAAGACCATG
* *
70360975 TCTGGGACATGGCATCGGCATCCAGAGGAGG
62 TCTGGGACATGGCATCGGCAT-CAGAGTAGT
* * *
70361006 GCTAGTGCAAGAAATGTCTAGGACATGCGTTAGCCATGCTATGATAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCT-GGACATGC-TTAGCCATGCTATGAGAGCCAGTGTAAGACCATGTC
* *
70361071 TGGGACATGGCATTGGCA-CAGAAATACGT
64 TGGGACATGGCATCGGCATCAG-AGTA-GT
* * * *
70361100 GCCAGTGTAAGACATGTCTGGGACATGCATAGGCC-TCGAC-A-GAGATAGCTAGTGTAAGA-CG
1 GCTAGTGTAAGACATGTCT-GGACATGCTTA-GCCAT-G-CTATGAG--AGCCAGTGTAAGACCA
* * *
70361161 TGTCTGGGACA-CGCATCGGC-TAAGAGTTGT
60 TGTCTGGGACATGGCATCGGCATCAGAGTAGT
* *
70361191 GCTAGTGTAAGGCATGTCTGAGACATGCATCAG-CATGCGTATATGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTG-GACATGC-TTAGCCATGC---TATGAGAGCCAGTGTAAGACCAT
70361255 GTCTGGGACATGGCATC
61 GTCTGGGACATGGCATC
70361272 AGCAAGATAT
Statistics
Matches: 215, Mismatches: 30, Indels: 42
0.75 0.10 0.15
Matches are distributed among these distances:
89 1 0.00
90 3 0.01
91 28 0.13
92 21 0.10
93 29 0.13
94 118 0.55
95 15 0.07
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (91 bp):
GCTAGTGTAAGACATGTCTGGACATGCTTAGCCATGCTATGAGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGGCATCAGAGTAGT
Found at i:70361154 original size:47 final size:45
Alignment explanation
Indices: 70360915--70361266 Score: 157
Period size: 47 Copynumber: 7.5 Consensus size: 45
70360905 TTTGTGCGCT
* ** * *
70360915 AGTGTAAGACATGTCTGGGACATGCTTCTGCT-ACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATAGGCTCACA-GA-GATAGCC
* * ** *
70360961 AATGTAAGACCATGTCTGGGACATGGCATCGGCATC-CAGAGGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATAGGC-TCACAGA-GATAGCC
* * * * *
70361009 AGTGCAAGAAATGTCTAGGACATGCGTTA-GC-CATGCTA-TGATAGCC
1 AGTGTAAGACATGTCTGGGACATGC-ATAGGCTCA--C-AGAGATAGCC
* *
70361055 AGTGTAAGACCATGTCTGGGACATGGCATTGG--CACAGAAATACGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATAGGCTCACAGAGATA---GCC
*
70361103 AGTGTAAGACATGTCTGGGACATGCATAGGCCTCGACAGAGATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATAGG-CTC-ACAGAGATAGCC
* * * * * *
70361150 AGTGTAAGACGTGTCTGGGACACGCATCGGCT-A-AGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATAGGCTCACAGAGAT-AGCC
* * ** * *
70361194 AGTGTAAGGCATGTCTGAGACATGCATCA-GCATGCGTATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCAT-AGGC-T-CACAGA-GATAGCC
70361242 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
70361267 GCATCAGCAA
Statistics
Matches: 233, Mismatches: 45, Indels: 53
0.70 0.14 0.16
Matches are distributed among these distances:
43 5 0.02
44 31 0.13
45 5 0.02
46 32 0.14
47 86 0.37
48 47 0.20
49 19 0.08
50 8 0.03
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATAGGCTCACAGAGATAGCC
Found at i:70364561 original size:78 final size:78
Alignment explanation
Indices: 70364421--70364657 Score: 359
Period size: 78 Copynumber: 3.0 Consensus size: 78
70364411 CCTTGGGAAG
* *
70364421 TAAACAAATCCATAAAATAATCATTTGTAACATCAAATAGCCCCTCACTATCTCAAACCAAACTC
1 TAAACAAATCAATAAAATAATCATTTGTAACATCAAATAGCCCCTCACTATCTCGAACCAAACTC
*
70364486 CCATTATTTGTAA
66 CCATCATTTGTAA
* * *
70364499 TAAATAAATTAATAAATTAATCATTTGTAACATCAAATAGCCCCTCACTATCTCGAACCAAACTC
1 TAAACAAATCAATAAAATAATCATTTGTAACATCAAATAGCCCCTCACTATCTCGAACCAAACTC
70364564 CCATCATTT-TGAA
66 CCATCATTTGT-AA
* * * *
70364577 TAAACAAATCCATAAAATAATCATTTGCAACATCAAATAGCCCTTCATTATCTCGAACCAAACTC
1 TAAACAAATCAATAAAATAATCATTTGTAACATCAAATAGCCCCTCACTATCTCGAACCAAACTC
*
70364642 CCATCATTTGCAA
66 CCATCATTTGTAA
70364655 TAA
1 TAA
70364658 GACCGCTCAC
Statistics
Matches: 143, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
77 1 0.01
78 142 0.99
ACGTcount: A:0.42, C:0.25, G:0.05, T:0.29
Consensus pattern (78 bp):
TAAACAAATCAATAAAATAATCATTTGTAACATCAAATAGCCCCTCACTATCTCGAACCAAACTC
CCATCATTTGTAA
Found at i:70366219 original size:42 final size:42
Alignment explanation
Indices: 70366130--70366227 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
70366120 ACCGAGACTA
* *
70366130 TGTGTAAGACCATATTTGGGATATGACATCATTATAAGATTT
1 TGTGTAAGACCATATCTGGGATATGACACCATTATAAGATTT
* *
70366172 CGTGTAAGACCATATCTGGGATATGGCACCGA-TATGAAG-TTT
1 TGTGTAAGACCATATCTGGGATATGACACC-ATTAT-AAGATTT
*
70366214 TGTGTAAAACCATA
1 TGTGTAAGACCATA
70366228 GCCGGGCTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
42 44 0.92
43 4 0.08
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (42 bp):
TGTGTAAGACCATATCTGGGATATGACACCATTATAAGATTT
Found at i:70373750 original size:42 final size:41
Alignment explanation
Indices: 70373674--70373824 Score: 142
Period size: 42 Copynumber: 3.6 Consensus size: 41
70373664 CAAGACTATG
* **
70373674 TGTAAGACCATATCTGGGATATGACATTATTATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCACGA-TATGAGATTTCA
* **
70373716 TGTAAGACCATATCTGGGATATGGCACCGATATGAAATTTTG
1 TGTAAGACCATATCTGGGATATGGCA-CGATATGAGATTTCA
* * **
70373758 TGTAAGACCATAGTC-GGGCTATTGGCATCGAAATGAGATCCCA
1 TGTAAGACCATA-TCTGGGATA-TGGCA-CGATATGAGATTTCA
* *
70373801 TATAAGACCATATTTGGGATATGG
1 TGTAAGACCATATCTGGGATATGG
70373825 TATTGGTGTG
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 55 0.62
43 33 0.38
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCACGATATGAGATTTCA
Found at i:70375581 original size:25 final size:27
Alignment explanation
Indices: 70375544--70375596 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
70375534 TCAAACATGC
70375544 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
70375570 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
70375596 A
1 A
70375597 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:70377103 original size:32 final size:32
Alignment explanation
Indices: 70377066--70377130 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
70377056 AATGCTTACC
70377066 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
70377098 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
70377130 A
1 A
70377131 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Done.