Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 234 of 335
Found at i:70625269 original size:42 final size:42
Alignment explanation
Indices: 70625210--70625301 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
70625200 TAGTCTCCCC
* ** *
70625210 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
70625252 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
70625294 AAATGGGC
1 AAATGGGC
70625302 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:70625402 original size:31 final size:31
Alignment explanation
Indices: 70625325--70625403 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
70625315 CGTTTGTAGT
*
70625325 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
70625356 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
70625387 AAAGGCTTCGACCCAGT
1 AAAGGCTTCGGCCCAGT
70625404 AACCATTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:70632466 original size:40 final size:39
Alignment explanation
Indices: 70632422--70632614 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
70632412 GTTCAAAACA
* * ** * *
70632422 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
70632462 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
70632502 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
70632541 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
70632580 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
70632615 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:70632533 original size:39 final size:39
Alignment explanation
Indices: 70632452--70632614 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
70632442 TATGGTAACC
* *
70632452 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
70632492 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
70632531 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
70632570 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
70632609 CGCACA
1 CGCACA
70632615 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:70638679 original size:38 final size:39
Alignment explanation
Indices: 70638533--70638694 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
70638523 TATGGTAACC
* *
70638533 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
70638573 CGCACAATTGCCTTAGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
70638612 CGTACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
70638651 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
70638689 CGCACA
1 CGCACA
70638695 TTCATTCACA
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 29 0.26
39 66 0.59
40 16 0.14
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:70646602 original size:50 final size:49
Alignment explanation
Indices: 70646474--70646606 Score: 198
Period size: 49 Copynumber: 2.7 Consensus size: 49
70646464 TGTGGTGTGT
* *
70646474 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGGCACCGATAGATGAAAGC
*
70646523 CAGTGTAAGACCTGTCTGGGACATGGCATCGGC-CTC-ACTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGGCAC-CGA-TAGATGAAAGC
70646572 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCGGCA
70646607 TCTTAACTCA
Statistics
Matches: 77, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
48 2 0.03
49 54 0.70
50 21 0.27
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.20
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGGCACCGATAGATGAAAGC
Found at i:70648431 original size:40 final size:40
Alignment explanation
Indices: 70648374--70648621 Score: 338
Period size: 40 Copynumber: 6.2 Consensus size: 40
70648364 TGAATGATAC
* * *
70648374 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
70648414 CTGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
70648454 CCGGGCTAAAACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
70648494 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
70648534 CCGGGATAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
70648574 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
70648614 CC-GGCTAA
1 CCGGGCTAA
70648622 ATTCCGAAGA
Statistics
Matches: 185, Mismatches: 22, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
39 5 0.03
40 178 0.96
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:70657747 original size:6 final size:6
Alignment explanation
Indices: 70657731--70657776 Score: 58
Period size: 6 Copynumber: 7.3 Consensus size: 6
70657721 TATAAACACC
70657731 TATTATT TATTTT TATTATT T-TATTT TATTTT TATTTT TATTTT TA
1 TATT-TT TATTTT TATT-TT TAT-TTT TATTTT TATTTT TATTTT TA
70657777 AATTACTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
6 27 0.75
7 9 0.25
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:70657747 original size:13 final size:12
Alignment explanation
Indices: 70657731--70657776 Score: 58
Period size: 13 Copynumber: 3.7 Consensus size: 12
70657721 TATAAACACC
70657731 TATTATTTATTTT
1 TATT-TTTATTTT
70657744 TATTATTT-TATTT
1 TATT-TTTAT-TTT
70657757 TATTTTTATTTT
1 TATTTTTATTTT
70657769 TATTTTTA
1 TATTTTTA
70657777 AATTACTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
12 15 0.48
13 16 0.52
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (12 bp):
TATTTTTATTTT
Found at i:70667465 original size:41 final size:41
Alignment explanation
Indices: 70667420--70667537 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
70667410 TGAAAGATAA
70667420 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
70667461 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
70667491 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
70667532 ATGTAG
1 ATGTAG
70667538 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:70667474 original size:71 final size:71
Alignment explanation
Indices: 70667388--70667587 Score: 400
Period size: 71 Copynumber: 2.8 Consensus size: 71
70667378 GAGATGTATC
70667388 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70667453 AGGACA
66 AGGACA
70667459 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70667524 AGGACA
66 AGGACA
70667530 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTC
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTC
70667588 GTGAAGTGTA
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 129 1.00
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.20
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:70675086 original size:41 final size:41
Alignment explanation
Indices: 70675041--70675158 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
70675031 TGAAAGATAA
70675041 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
70675082 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
70675112 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
70675153 ATGTAG
1 ATGTAG
70675159 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:70675097 original size:71 final size:71
Alignment explanation
Indices: 70675009--70675238 Score: 425
Period size: 71 Copynumber: 3.3 Consensus size: 71
70674999 CGAGATGTAT
70675009 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70675074 AGGACA
66 AGGACA
70675080 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70675145 AGGACA
66 AGGACA
70675151 CCATGTAGACAAGAGAGCTACGTGAAAG----ATGTAGCTAGGTCGCATGCGTGATTCCAAGTG-
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70675211 AGGACA
66 AGGACA
70675217 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
70675239 AGACAAATGG
Statistics
Matches: 159, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
66 28 0.18
67 32 0.20
71 99 0.62
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:70675118 original size:138 final size:136
Alignment explanation
Indices: 70674976--70675238 Score: 388
Period size: 138 Copynumber: 1.9 Consensus size: 136
70674966 ACACCCTGTA
* * * * *
70674976 GTAGCTAGGTCACATGTGTGA-T-ACGAGATGTA-TCCATGTAGACAAGAGAGCTACGTGAAAGA
1 GTAGCTAGGTCACATGCGTGATTCAAGAGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG-
70675038 TAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGT
65 ---ATGTAGCTAGGTCGCATGCGTGATTCCAAGTG-AGGACACCATGTAGACAAGAGAGCTACGT
70675103 GAAAGATAAAT
126 GAAAGATAAAT
* *
70675114 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCACATGCGTGATT-CAAGAGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
70675179 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAGGACACCATGTAGACAAGAGAGCTACG
65 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAGGACACCATGTAGACAAGAGAGCTACG
70675239 AGACAAATGG
Statistics
Matches: 114, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
137 28 0.25
138 51 0.45
139 1 0.01
141 6 0.05
142 28 0.25
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (136 bp):
GTAGCTAGGTCACATGCGTGATTCAAGAGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TGTAGCTAGGTCGCATGCGTGATTCCAAGTGAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
ATAAAT
Found at i:70684705 original size:40 final size:40
Alignment explanation
Indices: 70684639--70684805 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
70684629 AAATTGAATG
* * *
70684639 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
70684678 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
70684718 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
70684758 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
70684798 ATATCCGG
1 ATATCCGG
70684806 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:70688649 original size:14 final size:14
Alignment explanation
Indices: 70688630--70688663 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
70688620 ATTGTTTTAT
70688630 AATAATGTTTTGAG
1 AATAATGTTTTGAG
70688644 AATAATGTTTTGAG
1 AATAATGTTTTGAG
70688658 AATAAT
1 AATAAT
70688664 ATGATTATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (14 bp):
AATAATGTTTTGAG
Found at i:70699459 original size:40 final size:40
Alignment explanation
Indices: 70699400--70699647 Score: 347
Period size: 40 Copynumber: 6.2 Consensus size: 40
70699390 TGAATGATAC
* * *
70699400 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
70699440 CCGAGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
70699480 CCGGGCTAAAACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
70699520 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
70699560 CCGGGGTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
70699600 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
70699640 CC-GGCTAA
1 CCGGGCTAA
70699648 ATTCCGAAGA
Statistics
Matches: 187, Mismatches: 20, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
39 5 0.03
40 180 0.96
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:70708769 original size:6 final size:6
Alignment explanation
Indices: 70708753--70708798 Score: 58
Period size: 6 Copynumber: 7.3 Consensus size: 6
70708743 TATAAACACC
70708753 TATTATT TATTTT TATTATT T-TATTT TATTTT TATTTT TATTTT TA
1 TATT-TT TATTTT TATT-TT TAT-TTT TATTTT TATTTT TATTTT TA
70708799 AATTACTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
6 27 0.75
7 9 0.25
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:70708769 original size:13 final size:12
Alignment explanation
Indices: 70708753--70708798 Score: 58
Period size: 13 Copynumber: 3.7 Consensus size: 12
70708743 TATAAACACC
70708753 TATTATTTATTTT
1 TATT-TTTATTTT
70708766 TATTATTT-TATTT
1 TATT-TTTAT-TTT
70708779 TATTTTTATTTT
1 TATTTTTATTTT
70708791 TATTTTTA
1 TATTTTTA
70708799 AATTACTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
12 15 0.48
13 16 0.52
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (12 bp):
TATTTTTATTTT
Found at i:70724908 original size:30 final size:30
Alignment explanation
Indices: 70724861--70724920 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
70724851 TTTCCGAGCC
70724861 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* * *
70724891 TAGGGGCAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGT-GTAATTATGCAAAAGTT
70724921 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.38, C:0.07, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:70727206 original size:29 final size:29
Alignment explanation
Indices: 70727116--70727275 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
70727106 ACTCGATTTC
* * **
70727116 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
70727145 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
70727173 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
70727203 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
70727232 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
70727261 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
70727276 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:70733731 original size:40 final size:40
Alignment explanation
Indices: 70733665--70733831 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
70733655 AAATTGAATG
* * *
70733665 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
70733704 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
70733744 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
70733784 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
70733824 ATATCCGG
1 ATATCCGG
70733832 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:70741729 original size:40 final size:40
Alignment explanation
Indices: 70741663--70741829 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
70741653 AAATTGAATG
* * *
70741663 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
70741702 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
70741742 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
70741782 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
70741822 ATATCCGG
1 ATATCCGG
70741830 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:70748390 original size:14 final size:14
Alignment explanation
Indices: 70748371--70748404 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
70748361 ATTGTTTTAT
70748371 AATAATGTTTTGAG
1 AATAATGTTTTGAG
70748385 AATAATGTTTTGAG
1 AATAATGTTTTGAG
70748399 AATAAT
1 AATAAT
70748405 ATGATTATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (14 bp):
AATAATGTTTTGAG
Found at i:70760414 original size:40 final size:40
Alignment explanation
Indices: 70760318--70760425 Score: 155
Period size: 40 Copynumber: 2.6 Consensus size: 40
70760308 CGAATTCTCA
*
70760318 CACACTAAGTGCCAATACATAGCCGAAGCTATTTTAATCTTG
1 CACACTAAGTGCC-ATACATAGCCGAAGCTATTTGAATC-TG
*
70760360 CACACTAAGTGCCATACATAGCTGAAGCTATCTTGAATC-G
1 CACACTAAGTGCCATACATAGCCGAAGCTAT-TTGAATCTG
*
70760400 CACACTAAGTGCCATACATATCCGAA
1 CACACTAAGTGCCATACATAGCCGAA
70760426 TTGTCGTCAA
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
40 25 0.41
41 17 0.28
42 19 0.31
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATTTGAATCTG
Found at i:70762901 original size:53 final size:53
Alignment explanation
Indices: 70762838--70762943 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
70762828 CCACTATGTG
70762838 CATCGTATAAAATTTTCTGAATCAACTCTGGATTTTTCAATACGTAGATTCTA
1 CATCGTATAAAATTTTCTGAATCAACTCTGGATTTTTCAATACGTAGATTCTA
**
70762891 CATCGTATAAAATTTTCTGAATCAACTCTGGATTTTTTGATACGTAGATTCTA
1 CATCGTATAAAATTTTCTGAATCAACTCTGGATTTTTCAATACGTAGATTCTA
70762944 TCTTGGAACA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (53 bp):
CATCGTATAAAATTTTCTGAATCAACTCTGGATTTTTCAATACGTAGATTCTA
Found at i:70765467 original size:13 final size:15
Alignment explanation
Indices: 70765449--70765480 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
70765439 ATTACTCATC
70765449 AATCTCTT-CCTC-G
1 AATCTCTTGCCTCTG
70765462 AATCTCTTGCCTCTG
1 AATCTCTTGCCTCTG
70765477 AATC
1 AATC
70765481 AGCTTTCTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.19, C:0.34, G:0.09, T:0.38
Consensus pattern (15 bp):
AATCTCTTGCCTCTG
Found at i:70766734 original size:14 final size:16
Alignment explanation
Indices: 70766715--70766753 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
70766705 AAGAAAATTA
*
70766715 TGATATATGACA-A-G
1 TGATATATGAAATATG
70766729 TGATATATGAAATATG
1 TGATATATGAAATATG
70766745 TGATATATG
1 TGATATATG
70766754 TTATGTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.36
Consensus pattern (16 bp):
TGATATATGAAATATG
Found at i:70767037 original size:45 final size:45
Alignment explanation
Indices: 70766950--70767061 Score: 138
Period size: 45 Copynumber: 2.5 Consensus size: 45
70766940 GAATTCCAAG
70766950 CTCGTTGAGTTGGTCCGAGTTCGTGATATATGTGAGAAATCTGAA
1 CTCGTTGAGTTGGTCCGAGTTCGTGATATATGTGAGAAATCTGAA
* * * * *
70766995 CTTGTTGAGTTGGCCCAAGTTCGT-AGTATATGTGA-AGCATCTGAG
1 CTCGTTGAGTTGGTCCGAGTTCGTGA-TATATGTGAGA-AATCTGAA
*
70767040 CTCGTTAAGTTGGTCCGAGTTC
1 CTCGTTGAGTTGGTCCGAGTTC
70767062 ATTATGGATA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
44 2 0.04
45 54 0.96
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (45 bp):
CTCGTTGAGTTGGTCCGAGTTCGTGATATATGTGAGAAATCTGAA
Found at i:70767085 original size:44 final size:44
Alignment explanation
Indices: 70767030--70767114 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
70767020 GTATATGTGA
* * *
70767030 AGCATCTGAGCTCGTTAAGTTGGTCCGAGTTCATTATGGATACG
1 AGCATCCGAGCTCGTTAAGGTGGTCCGAGTTCATAATGGATACG
* *
70767074 AGCATCCGAGCTTGTTGAGGTGGTCCGAGTTCATAATGGAT
1 AGCATCCGAGCTCGTTAAGGTGGTCCGAGTTCATAATGGAT
70767115 GCGATACATG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (44 bp):
AGCATCCGAGCTCGTTAAGGTGGTCCGAGTTCATAATGGATACG
Found at i:70777119 original size:26 final size:26
Alignment explanation
Indices: 70777083--70777133 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
70777073 TTTGTTTCTA
70777083 TTTTGTACTTTTTCTTCTC-ATTTTTAC
1 TTTTGTAC-TTTT-TTCTCAATTTTTAC
70777110 TTTTG-ACTTTTTTCTCAATTTTTA
1 TTTTGTACTTTTTTCTCAATTTTTA
70777134 TTTGTCGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.22
25 11 0.48
26 2 0.09
27 5 0.22
ACGTcount: A:0.14, C:0.16, G:0.04, T:0.67
Consensus pattern (26 bp):
TTTTGTACTTTTTTCTCAATTTTTAC
Found at i:70778250 original size:10 final size:11
Alignment explanation
Indices: 70778237--70778287 Score: 52
Period size: 12 Copynumber: 4.6 Consensus size: 11
70778227 AACTAAGATT
70778237 AATAAAATA-A
1 AATAAAATATA
*
70778247 AATAAACAAATA
1 AATAAA-ATATA
*
70778259 AA-AATATATA
1 AATAAAATATA
70778269 AATATAAATATA
1 AATA-AAATATA
70778281 AATAAAA
1 AATAAAA
70778288 ATGAAACAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
10 12 0.36
11 8 0.24
12 13 0.39
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (11 bp):
AATAAAATATA
Found at i:70780434 original size:29 final size:28
Alignment explanation
Indices: 70780373--70780441 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 28
70780363 AATGAGATTG
*
70780373 GCACTAAGTGTGCGAGTTTAATTGTATA
1 GCACTAAGTGTGCAAGTTTAATTGTATA
70780401 GCACTAAGTGTGCAAGTTTGAATTGTATA
1 GCACTAAGTGTGCAAGTTT-AATTGTATA
70780430 GCACTAAGTGTG
1 GCACTAAGTGTG
70780442 TGGGTTTGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 18 0.46
29 21 0.54
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTTAATTGTATA
Found at i:70780448 original size:29 final size:29
Alignment explanation
Indices: 70780373--70780471 Score: 132
Period size: 28 Copynumber: 3.5 Consensus size: 29
70780363 AATGAGATTG
70780373 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
*
70780401 GCACTAAGTGTGCAAGTTTGAATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
* * *
70780430 GCACTAAGTGTGTGGGTTTGAACAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAA-TTGTATA
70780458 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70780472 GACTTACTGT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
28 32 0.51
29 30 0.48
30 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.32
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:70784258 original size:39 final size:40
Alignment explanation
Indices: 70784143--70784286 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
70784133 TCGTTCAAAC
* * ** * **
70784143 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
* * * *
70784183 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
70784223 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
70784262 GCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGACTTAGCCCGGATATCA
70784287 CTCGAACATT
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 51 0.57
40 38 0.43
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
Found at i:70799432 original size:46 final size:46
Alignment explanation
Indices: 70799250--70799422 Score: 301
Period size: 46 Copynumber: 3.8 Consensus size: 46
70799240 TATATATACA
* * *
70799250 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
70799296 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
70799342 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
70799388 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
70799423 CGCCACATAT
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 122 1.00
ACGTcount: A:0.23, C:0.32, G:0.10, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:70799475 original size:22 final size:22
Alignment explanation
Indices: 70799449--70799571 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
70799439 TTCCACGTTC
70799449 ATCACATTGGCCATTCTACCTT
1 ATCACATTGGCCATTCTACCTT
* *
70799471 ATCACATATATG-CATGT-TCACATT
1 ATCACAT-T-GGCCAT-TCT-ACCTT
**
70799495 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTACCTT
* *
70799518 ATCACATATATG-CATGT-TCACATT
1 ATCACAT-T-GGCCAT-TCT-ACCTT
*
70799542 CATCACATTGGCCATTCTGCCTT
1 -ATCACATTGGCCATTCTACCTT
70799565 ATCACAT
1 ATCACAT
70799572 ATATGCATGT
Statistics
Matches: 74, Mismatches: 13, Indels: 28
0.64 0.11 0.24
Matches are distributed among these distances:
22 21 0.28
23 19 0.26
24 20 0.27
25 14 0.19
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTCTACCTT
Found at i:70799477 original size:47 final size:47
Alignment explanation
Indices: 70799446--70799592 Score: 276
Period size: 47 Copynumber: 3.1 Consensus size: 47
70799436 CACTTCCACG
*
70799446 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
*
70799493 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
70799540 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
70799587 TTCATC
1 TTCATC
70799593 TCATAAAATC
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 97 1.00
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.36
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
Found at i:70799628 original size:94 final size:91
Alignment explanation
Indices: 70799446--70799617 Score: 224
Period size: 94 Copynumber: 1.9 Consensus size: 91
70799436 CACTTCCACG
** *
70799446 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATT-GAAAAT
*
70799511 CGGCCTTATCACATATATGCATGTTCACA
65 --GCCTTATCAAATATATGCATGTTCACA
* *
70799540 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCTCA-T-AAAAT-
1 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGAAAATG
70799602 CCTATATCAAAATATA
66 CCT-TATC-AAATATA
70799618 AATTTTCATG
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
88 3 0.04
89 4 0.06
90 6 0.09
91 2 0.03
93 1 0.01
94 54 0.77
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (91 bp):
TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGAAAATG
CCTTATCAAATATATGCATGTTCACA
Found at i:70806124 original size:42 final size:42
Alignment explanation
Indices: 70806072--70806191 Score: 123
Period size: 42 Copynumber: 2.9 Consensus size: 42
70806062 TCACATCGAA
* * * **
70806072 GCCATATCCCAGATATGGTCTTATACGAAGTCTCATTTTGAC
1 GCCATATCCCAGATATGGTCTTATACAAAATCTCATATCAAC
* * ** * *
70806114 GCTATGTCCCAGAGGTGGTCTTACACAAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTATACAAAATCTCATATCAAC
**
70806156 GCCATATCCCAGATATGGTCTTATACAGGATCTCAT
1 GCCATATCCCAGATATGGTCTTATACAAAATCTCAT
70806192 CAACCCAAAT
Statistics
Matches: 60, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTATACAAAATCTCATATCAAC
Found at i:70813260 original size:74 final size:76
Alignment explanation
Indices: 70813172--70813329 Score: 230
Period size: 76 Copynumber: 2.1 Consensus size: 76
70813162 TCATATTTTA
*
70813172 AATTTAGAGTTGGATTTGTTTCATTTTT-AG-CCTAGAATTTAGATTTTAAGTTTTAATAAATTT
1 AATTTAGAGCTGGATTTGTTTCATTTTTAAGTCCTAGAATTTAGATTTTAAGTTTTAATAAATTT
*
70813235 AATTAGATTTT
66 AATTAGATGTT
* ** * *
70813246 AGTTTAGAGCTGGATTTGTTTCATTTTTAAGTTGTAGAATTTAGATTTTAAGTTTTCATAGATTT
1 AATTTAGAGCTGGATTTGTTTCATTTTTAAGTCCTAGAATTTAGATTTTAAGTTTTAATAAATTT
*
70813311 CATTAGATGTT
66 AATTAGATGTT
70813322 AATTTAGA
1 AATTTAGA
70813330 AATTAGATTA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
74 26 0.36
75 2 0.03
76 45 0.62
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.50
Consensus pattern (76 bp):
AATTTAGAGCTGGATTTGTTTCATTTTTAAGTCCTAGAATTTAGATTTTAAGTTTTAATAAATTT
AATTAGATGTT
Found at i:70813809 original size:41 final size:41
Alignment explanation
Indices: 70813692--70813819 Score: 172
Period size: 41 Copynumber: 3.1 Consensus size: 41
70813682 GCAAAAATTT
* * *
70813692 TAAAATACAGAGCAATAGCGGCG-TTTTACTAAAAACGCCAC
1 TAAAA-ACAGAGCATTAGCGGCGCTTTTAGTAAAAACGCCGC
70813733 TAAAAACAGAGCATTAGCGGCGC-TTTAGTAAAAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCGCTTTTAGT-AAAAACGCCGC
*
70813774 TAAAAACCAGAGCATTAGCGGCGCTTTTGGT-AAAACGCCGC
1 TAAAAA-CAGAGCATTAGCGGCGCTTTTAGTAAAAACGCCGC
70813815 TAAAA
1 TAAAA
70813820 GTCATATAAC
Statistics
Matches: 79, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
40 21 0.27
41 36 0.46
42 17 0.22
43 5 0.06
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (41 bp):
TAAAAACAGAGCATTAGCGGCGCTTTTAGTAAAAACGCCGC
Found at i:70814019 original size:21 final size:21
Alignment explanation
Indices: 70813990--70814072 Score: 67
Period size: 21 Copynumber: 3.6 Consensus size: 21
70813980 TAGTTTAAGG
*
70813990 TTTATGGTTTAAGATATATGA
1 TTTAGGGTTTAAGATATATGA
*
70814011 TTTAGGGTTTAAGCAAGTTTATGA
1 TTTAGGGTTTAAG--A-TATATGA
* *
70814035 GTTAACTATGGTTTAAGATATACGA
1 -TT---TAGGGTTTAAGATATATGA
70814060 TTTAGGGTTTAAG
1 TTTAGGGTTTAAG
70814073 GTTTAAGAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
21 22 0.45
23 1 0.02
24 8 0.16
25 7 0.14
26 1 0.02
28 10 0.20
ACGTcount: A:0.31, C:0.04, G:0.23, T:0.42
Consensus pattern (21 bp):
TTTAGGGTTTAAGATATATGA
Found at i:70814640 original size:36 final size:36
Alignment explanation
Indices: 70814597--70814669 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
70814587 AGTATTTAAG
70814597 ATAAATTTTATATATATTATATTCCCTAAGTCATTT
1 ATAAATTTTATATATATTATATTCCCTAAGTCATTT
70814633 ATAAATTTTATATATATTATATTCCCTAAGTCATTT
1 ATAAATTTTATATATATTATATTCCCTAAGTCATTT
70814669 A
1 A
70814670 GTTAAAGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.49
Consensus pattern (36 bp):
ATAAATTTTATATATATTATATTCCCTAAGTCATTT
Found at i:70818199 original size:31 final size:31
Alignment explanation
Indices: 70818164--70818225 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
70818154 AAAAGCAGTC
70818164 TCAGGGTTAGTGAAGGAAGACCAAAATGATA
1 TCAGGGTTAGTGAAGGAAGACCAAAATGATA
70818195 TCAGGGTTAGTGAAGGAAGACCAAAATGATA
1 TCAGGGTTAGTGAAGGAAGACCAAAATGATA
70818226 AATAAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.10, G:0.29, T:0.19
Consensus pattern (31 bp):
TCAGGGTTAGTGAAGGAAGACCAAAATGATA
Found at i:70818591 original size:8 final size:8
Alignment explanation
Indices: 70818578--70818605 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
70818568 TTGTTTTGCA
70818578 TTTTCTTT
1 TTTTCTTT
70818586 TTTTCTTT
1 TTTTCTTT
70818594 TTTTCTTT
1 TTTTCTTT
70818602 TTTT
1 TTTT
70818606 GCCAAAGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTCTTT
Found at i:70818930 original size:12 final size:12
Alignment explanation
Indices: 70818913--70818945 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
70818903 TCTTGCATAT
70818913 ATGATTAATAAC
1 ATGATTAATAAC
70818925 ATGATTAATAAC
1 ATGATTAATAAC
70818937 ATGATTAAT
1 ATGATTAAT
70818946 GGTTCTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (12 bp):
ATGATTAATAAC
Found at i:70819672 original size:46 final size:45
Alignment explanation
Indices: 70819613--70819747 Score: 213
Period size: 46 Copynumber: 3.0 Consensus size: 45
70819603 ACCTTTAACG
*
70819613 GCGTTTGTTGGAAAAGCGCCGCTAAAGGTCCTGAGCTTTAGCGGC
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGAGCTTTAGCGGC
70819658 AGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGAGCTTTAGC-G-
1 -GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGAGCTTTAGCGGC
*
70819702 GTGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTG-GCCTTTAGCGGC
1 GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGAG-CTTTAGCGGC
70819747 G
1 G
70819748 TTTTTTCAAA
Statistics
Matches: 84, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
42 1 0.01
43 39 0.46
44 1 0.01
45 2 0.02
46 41 0.49
ACGTcount: A:0.20, C:0.21, G:0.35, T:0.24
Consensus pattern (45 bp):
GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGAGCTTTAGCGGC
Found at i:70819722 original size:43 final size:43
Alignment explanation
Indices: 70819605--70819750 Score: 222
Period size: 43 Copynumber: 3.3 Consensus size: 43
70819595 TTTTTATGAC
* *
70819605 CTTTAACGGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCCTGAG
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGAG
70819648 CTTTAGCGGCAGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGAG
1 CTTTAGC-G--GCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGAG
*
70819694 CTTTAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTG-G
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGAG
70819736 CCTTTAGCGGCGTTT
1 -CTTTAGCGGCGTTT
70819751 TTTCAAATAA
Statistics
Matches: 95, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
42 1 0.01
43 51 0.54
44 1 0.01
45 1 0.01
46 41 0.43
ACGTcount: A:0.20, C:0.21, G:0.33, T:0.26
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGAG
Found at i:70826102 original size:40 final size:39
Alignment explanation
Indices: 70826001--70826176 Score: 214
Period size: 40 Copynumber: 4.5 Consensus size: 39
70825991 TGGATGATAA
*
70826001 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAT
* *
70826040 TCGGGCTAAG-CCCGAAGGCATTTGTACGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
70826079 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
70826119 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
* *
70826159 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70826177 TACTTGGTTT
Statistics
Matches: 120, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
38 22 0.18
39 37 0.31
40 61 0.51
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:70834076 original size:40 final size:39
Alignment explanation
Indices: 70833971--70834147 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 39
70833961 TGGATGATAA
*
70833971 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-T
70834011 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
70834050 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
70834090 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAT
* *
70834130 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70834148 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
39 50 0.40
40 74 0.60
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:70834136 original size:79 final size:79
Alignment explanation
Indices: 70833971--70834147 Score: 234
Period size: 79 Copynumber: 2.2 Consensus size: 79
70833961 TGGATGATAA
* * *
70833971 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGA
*
70834036 GCGAGCTACTATAT
66 GCAAGCTACTATAT
*
70834050 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCATTT
*
70834114 GAGCAAG-TAGTTATAT
64 GAGCAAGCTA-CTATAT
* *
70834130 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70834148 TACTTGGTTT
Statistics
Matches: 87, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
78 2 0.02
79 60 0.69
80 25 0.29
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGA
GCAAGCTACTATAT
Found at i:70835567 original size:45 final size:44
Alignment explanation
Indices: 70835503--70835694 Score: 171
Period size: 45 Copynumber: 4.4 Consensus size: 44
70835493 GGGTGTTACA
* **
70835503 GGGACGTTGGCATCAATATATGTGATTTTGTGTAAGACCACGTCT
1 GGGACGTTGGCATC-GTATATGTGATTACGTGTAAGACCACGTCT
* * *
70835548 GGGACGTTGGCATCGATATAAGTGGTTACGTGTAAGACCATGTCT
1 GGGACGTTGGCATCG-TATATGTGATTACGTGTAAGACCACGTCT
* * * * *
70835593 GGGACATCGGCAT--TATATTTGATT-TGTGTAAGACC-CTGTTT
1 GGGACGTTGGCATCGTATATGTGATTACGTGTAAGACCAC-GTCT
* * *
70835634 GGGACAG-TGGCATCG-ATATGAGATAACATGTAAGACCACGTCT
1 GGGAC-GTTGGCATCGTATATGTGATTACGTGTAAGACCACGTCT
*
70835677 GGGACGTTGGCATTGTAT
1 GGGACGTTGGCATCGTAT
70835695 GATATATGTG
Statistics
Matches: 115, Mismatches: 23, Indels: 19
0.73 0.15 0.12
Matches are distributed among these distances:
41 23 0.20
42 16 0.14
43 24 0.21
44 3 0.03
45 49 0.43
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (44 bp):
GGGACGTTGGCATCGTATATGTGATTACGTGTAAGACCACGTCT
Found at i:70836377 original size:16 final size:16
Alignment explanation
Indices: 70836356--70836388 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
70836346 ACTTAACTTC
70836356 TATGTTTGCATT-TGGT
1 TATGTTTG-ATTATGGT
70836372 TATGTTTGATTATGGT
1 TATGTTTGATTATGGT
70836388 T
1 T
70836389 TAAGTTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.19
16 13 0.81
ACGTcount: A:0.15, C:0.03, G:0.24, T:0.58
Consensus pattern (16 bp):
TATGTTTGATTATGGT
Found at i:70837441 original size:19 final size:19
Alignment explanation
Indices: 70837417--70837454 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
70837407 TGAATATTGA
70837417 CATATTGGTTTAGTTATGT
1 CATATTGGTTTAGTTATGT
*
70837436 CATATTGGTTTGGTTATGT
1 CATATTGGTTTAGTTATGT
70837455 GAATTTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.05, G:0.24, T:0.53
Consensus pattern (19 bp):
CATATTGGTTTAGTTATGT
Found at i:70841050 original size:25 final size:27
Alignment explanation
Indices: 70841008--70841064 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
70840998 ATCCTCTCTC
70841008 GAGCCATATAATAGGAAA-CTCACAAA
1 GAGCCATATAATAGGAAAGCTCACAAA
70841034 GAGCCAT-TAATCA-GAAAGCTCACAAA
1 GAGCCATATAAT-AGGAAAGCTCACAAA
70841060 GAGCC
1 GAGCC
70841065 TATCGGGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 8 0.28
26 21 0.72
ACGTcount: A:0.46, C:0.23, G:0.18, T:0.14
Consensus pattern (27 bp):
GAGCCATATAATAGGAAAGCTCACAAA
Found at i:70841142 original size:26 final size:26
Alignment explanation
Indices: 70841113--70841173 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
70841103 ATAAGAGCCA
* *
70841113 TAATCAGGAAGTTCACAAAGAACTTT
1 TAATCAGGAAGCTCACAAAGAACCTT
*
70841139 TAATCAGGAAGCTCACAAAGAGCCTT
1 TAATCAGGAAGCTCACAAAGAACCTT
70841165 TAATCAGGA
1 TAATCAGGA
70841174 GCTTCGGATA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAACCTT
Found at i:70844243 original size:49 final size:49
Alignment explanation
Indices: 70844187--70844498 Score: 545
Period size: 49 Copynumber: 6.4 Consensus size: 49
70844177 TACATATATG
* * * *
70844187 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
70844236 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
70844284 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
70844333 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
70844382 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
70844431 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
70844480 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
70844499 TAATGTAAAA
Statistics
Matches: 256, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
48 46 0.18
49 210 0.82
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:70844650 original size:37 final size:37
Alignment explanation
Indices: 70844600--70844721 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
70844590 GGAATATGTT
*
70844600 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
70844637 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
70844674 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
70844711 CCGGGTAAGAC
1 CCGGGTAAGAC
70844722 TTCTTTTATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:70846579 original size:40 final size:40
Alignment explanation
Indices: 70846535--70846619 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
70846525 GAGAATTGAG
** * *
70846535 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTACT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
* *
70846575 AGTGATGTATCCGGGCTAGGCCCCGAAGAGCAATCATACT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
70846615 AGTGA
1 AGTGA
70846620 CGTGTATTCG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
Found at i:70846859 original size:29 final size:29
Alignment explanation
Indices: 70846817--70846951 Score: 252
Period size: 29 Copynumber: 4.7 Consensus size: 29
70846807 GCGAATGATT
70846817 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
70846846 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
70846875 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
70846904 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
70846933 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
70846952 TTTTTCAACA
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 104 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:70850253 original size:49 final size:49
Alignment explanation
Indices: 70850197--70850568 Score: 530
Period size: 49 Copynumber: 7.4 Consensus size: 49
70850187 TACATATATG
* * * *
70850197 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
70850246 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
70850295 TGTGATGA-GCCTAATGGCTGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
70850343 TGTGATATATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTG------A--T-A--AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
70850403 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
70850452 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
70850501 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
70850550 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
70850569 TAATGTAAAA
Statistics
Matches: 297, Mismatches: 14, Indels: 24
0.89 0.04 0.07
Matches are distributed among these distances:
48 41 0.14
49 208 0.70
52 1 0.00
54 2 0.01
56 1 0.00
59 1 0.00
60 43 0.14
ACGTcount: A:0.28, C:0.08, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:70850372 original size:157 final size:150
Alignment explanation
Indices: 70850190--70850568 Score: 577
Period size: 157 Copynumber: 2.5 Consensus size: 150
70850180 TATGATATAC
* * * * * *
70850190 ATATATGTGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAG
1 ATATATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
*
70850255 GCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGA-GCCTAATGGCTGATGT
66 GCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGT
70850319 GGTGAATGTGAAAGTGTATGTATATGTG
131 GGTGAATGTGAAA--G--TG--TA--TG
*
70850347 ATATATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAG
1 ATATATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
*
70850412 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGT
66 GCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGT
70850477 GGTGAATGTGAAAGTGTATG
131 GGTGAATGTGAAAGTGTATG
70850497 ---TATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
1 ATATATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
70850559 GCCTAATGGC
66 GCCTAATGGC
70850569 TAATGTAAAA
Statistics
Matches: 211, Mismatches: 10, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
147 71 0.34
150 2 0.01
152 2 0.01
154 2 0.01
156 1 0.00
157 105 0.50
158 28 0.13
ACGTcount: A:0.29, C:0.08, G:0.32, T:0.31
Consensus pattern (150 bp):
ATATATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAG
GCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGT
GGTGAATGTGAAAGTGTATG
Found at i:70850720 original size:37 final size:37
Alignment explanation
Indices: 70850670--70850754 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
70850660 GGAATATGTT
*
70850670 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
70850707 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
70850744 CCGGGTAAGAC
1 CCGGGTAAGAC
70850755 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:70854676 original size:21 final size:21
Alignment explanation
Indices: 70854652--70854693 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
70854642 AAATGATAAG
70854652 TTTAATTTCAAAAACTTTGGT
1 TTTAATTTCAAAAACTTTGGT
*
70854673 TTTAATTTTAAAAACTTTGGT
1 TTTAATTTCAAAAACTTTGGT
70854694 AGAAATCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (21 bp):
TTTAATTTCAAAAACTTTGGT
Found at i:70873845 original size:43 final size:43
Alignment explanation
Indices: 70873784--70873980 Score: 337
Period size: 43 Copynumber: 4.7 Consensus size: 43
70873774 GAATATTCAG
*
70873784 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
*
70873827 ATGATAACCGGGCCAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
*
70873870 ATGATAACCGGGCTAAGTCCCGAAGGTATTTGTGTGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
*
70873913 ATGATAACTGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
70873956 AT-AT--CCGGGCTAAGTCCCGAAGGCA
1 ATGATAACCGGGCTAAGTCCCGAAGGCA
70873981 GTTGAGCGAG
Statistics
Matches: 147, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
40 20 0.14
42 2 0.01
43 125 0.85
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (43 bp):
ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
Found at i:70874017 original size:39 final size:40
Alignment explanation
Indices: 70873791--70874017 Score: 197
Period size: 43 Copynumber: 5.5 Consensus size: 40
70873781 CAGATGATAA
* *
70873791 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTTACTAT-AT
* * * *
70873832 AACCGGGCCAAGTCCCGAAGGCATTTGTGTGAGTTACTATGAT
1 --CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTTACTAT-AT
* * * *
70873875 AACCGGGCTAAGTCCCGAAGGTATTTGTGTGAGTTACTATGAT
1 --CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTTACTAT-AT
* * * *
70873918 AACTGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 --CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTTACTATAT
70873960 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTTA-CTATAT
* * *
70874000 -CTGGCTAAATCTCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70874018 TACTTGGTTT
Statistics
Matches: 170, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 17 0.10
40 33 0.19
42 2 0.01
43 118 0.69
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGTTACTATAT
Found at i:70880552 original size:42 final size:42
Alignment explanation
Indices: 70880493--70880576 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
70880483 TATGTAAGAA
*
70880493 AGGGTTGCAATCCTTACCTTGCATATGTACTTGATACAAAAG
1 AGGGTTGCAATCCTTACCTTACATATGTACTTGATACAAAAG
* *
70880535 AGGGTTGCAATGCTTACCTTACGTATGTACTTGATACAAAAG
1 AGGGTTGCAATCCTTACCTTACATATGTACTTGATACAAAAG
70880577 TGTTTGAAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (42 bp):
AGGGTTGCAATCCTTACCTTACATATGTACTTGATACAAAAG
Found at i:70885511 original size:27 final size:27
Alignment explanation
Indices: 70884982--70885510 Score: 717
Period size: 27 Copynumber: 19.6 Consensus size: 27
70884972 AAAGCACTCC
70884982 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
70885009 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70885036 CGATTTACAGAATTACCGTTTTATCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
70885063 CGATTTTTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
70885090 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
70885117 CGATTTACAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
70885144 CGATTTTTAAAATTACCGTTTTACTCC-
1 CGATTTACAGAATTACCGTTTTAC-CCT
*
70885171 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
70885198 C-AGGTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
70885225 CGACTTGTA-A-AATTACCGTTTTACCCT
1 CGA-TT-TACAGAATTACCGTTTTACCCT
70885252 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
70885279 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
70885306 CGATTTACAGAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
70885333 CAATTTACATAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
70885360 CAATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
70885387 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
70885414 CAATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
70885441 CGATTTATAGAATTACCGTTTCACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
70885468 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70885495 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
70885511 TAAAATACCC
Statistics
Matches: 449, Mismatches: 44, Indels: 18
0.88 0.09 0.04
Matches are distributed among these distances:
25 2 0.00
26 7 0.02
27 432 0.96
28 6 0.01
29 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:70886861 original size:20 final size:20
Alignment explanation
Indices: 70886836--70886878 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
70886826 ATTTTGATAA
70886836 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70886856 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70886876 ACA
1 ACA
70886879 CGAGATGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70886886 original size:20 final size:20
Alignment explanation
Indices: 70886843--70886886 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
70886833 TAAACATGAT
* *
70886843 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACACGAG
70886863 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAG
70886883 ATGT
1 ATGT
70886887 TCATAAATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACACGAG
Found at i:70886989 original size:24 final size:24
Alignment explanation
Indices: 70886933--70887098 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
70886923 GAGGAAGTGA
70886933 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
70886956 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
70886980 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
70887004 AAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
70887028 -AAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
70887051 AAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
70887075 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
70887099 ATGATAAAGC
Statistics
Matches: 128, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
23 43 0.34
24 75 0.59
25 10 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:70887002 original size:47 final size:48
Alignment explanation
Indices: 70886933--70887099 Score: 232
Period size: 47 Copynumber: 3.5 Consensus size: 48
70886923 GAGGAAGTGA
*
70886933 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
* *
70886980 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
* * *
70887028 -AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
*
70887075 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
70887100 TGATAAAGCA
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
47 65 0.60
48 31 0.29
49 12 0.11
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATC
Found at i:70887049 original size:71 final size:71
Alignment explanation
Indices: 70886933--70887098 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
70886923 GAGGAAGTGA
* * *
70886933 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
70886998 GTTATC
66 GTTATC
* *
70887004 AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCTA
1 AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
70887069 GTTATT
66 GTTATC
*
70887075 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
70887099 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 75 0.87
72 11 0.13
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATCAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:70887327 original size:31 final size:31
Alignment explanation
Indices: 70887292--70887355 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
70887282 CGTTTACCGT
*
70887292 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
70887323 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70887354 AA
1 AA
70887356 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70891950 original size:23 final size:23
Alignment explanation
Indices: 70891923--70891999 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
70891913 AAACATAATA
70891923 ATTTATTGAAATAATAGAACTTT
1 ATTTATTGAAATAATAGAACTTT
* * * *
70891946 ATTTATACTGAAGT-TTAGCATA-ATA
1 ATTTAT--TGAAATAATAG-A-ACTTT
70891971 ATTTATTGAAATAATAGAACTTT
1 ATTTATTGAAATAATAGAACTTT
70891994 ATTTAT
1 ATTTAT
70892000 ACTGAAGTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
22 1 0.03
23 19 0.47
24 6 0.15
25 13 0.32
26 1 0.03
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44
Consensus pattern (23 bp):
ATTTATTGAAATAATAGAACTTT
Found at i:70891974 original size:48 final size:48
Alignment explanation
Indices: 70891916--70892015 Score: 200
Period size: 48 Copynumber: 2.1 Consensus size: 48
70891906 ATTAAGCAAA
70891916 CATAATAATTTATTGAAATAATAGAACTTTATTTATACTGAAGTTTAG
1 CATAATAATTTATTGAAATAATAGAACTTTATTTATACTGAAGTTTAG
70891964 CATAATAATTTATTGAAATAATAGAACTTTATTTATACTGAAGTTTAG
1 CATAATAATTTATTGAAATAATAGAACTTTATTTATACTGAAGTTTAG
70892012 CATA
1 CATA
70892016 CTTAAGAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.41
Consensus pattern (48 bp):
CATAATAATTTATTGAAATAATAGAACTTTATTTATACTGAAGTTTAG
Found at i:70900355 original size:34 final size:34
Alignment explanation
Indices: 70900317--70900382 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
70900307 GTAAGTACAG
*
70900317 TTAGACCCCATACTGATGAAATGACTGTTATATC
1 TTAGACCCCAGACTGATGAAATGACTGTTATATC
*
70900351 TTAGACCCCAGACTGATGAAGTGACTGTTATA
1 TTAGACCCCAGACTGATGAAATGACTGTTATA
70900383 CCCTTAGAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (34 bp):
TTAGACCCCAGACTGATGAAATGACTGTTATATC
Found at i:70900757 original size:34 final size:34
Alignment explanation
Indices: 70900676--70900757 Score: 89
Period size: 34 Copynumber: 2.4 Consensus size: 34
70900666 ACTTGCATCT
*
70900676 CTAATACTG-TATTG-AATTGGGCTAAGGCCTACA
1 CTAATACTGCTACTGTAA-TGGGCTAAGGCCTACA
* *
70900709 CTACTACTGTTACTGTAATGGGCTAAGGCC-ATCA
1 CTAATACTGCTACTGTAATGGGCTAAGGCCTA-CA
*
70900743 CTAATATTGCTACTG
1 CTAATACTGCTACTG
70900758 ACAAGGGCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
33 9 0.22
34 30 0.73
35 2 0.05
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (34 bp):
CTAATACTGCTACTGTAATGGGCTAAGGCCTACA
Found at i:70900766 original size:34 final size:34
Alignment explanation
Indices: 70900694--70900772 Score: 81
Period size: 34 Copynumber: 2.3 Consensus size: 34
70900684 GTATTGAATT
* * *
70900694 GGGCTAAGGCCTACACTACTACTGTTACTGTAAT
1 GGGCTAAGGCCTACACTAATACTGCTACTGTAAA
*
70900728 GGGCTAAGGCC-ATCACTAATATTGCTACTG-ACAA
1 GGGCTAAGGCCTA-CACTAATACTGCTACTGTA-AA
*
70900762 GGGCTTAGGCC
1 GGGCTAAGGCC
70900773 CAAACTGTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
33 2 0.05
34 36 0.95
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (34 bp):
GGGCTAAGGCCTACACTAATACTGCTACTGTAAA
Found at i:70910127 original size:15 final size:15
Alignment explanation
Indices: 70910107--70910136 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
70910097 GACGTGTTAG
70910107 GTTTGAAACATTTTA
1 GTTTGAAACATTTTA
70910122 GTTTGAAACATTTTA
1 GTTTGAAACATTTTA
70910137 ATTGCACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (15 bp):
GTTTGAAACATTTTA
Found at i:70912403 original size:24 final size:23
Alignment explanation
Indices: 70912355--70912408 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
70912345 AAGAATAATT
70912355 ATTAATTATTCAATAAATTGAAAA
1 ATTAATTATTCAATAAATT-AAAA
*
70912379 ATTAATTATTAGAATAAAATTAAAA
1 ATTAATTATT-CAAT-AAATTAAAA
*
70912404 TTTAA
1 ATTAA
70912409 GAGAAAATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 10 0.38
25 11 0.42
26 5 0.19
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.39
Consensus pattern (23 bp):
ATTAATTATTCAATAAATTAAAA
Found at i:70920825 original size:28 final size:28
Alignment explanation
Indices: 70920785--70920887 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
70920775 ATTGCATGAC
* **
70920785 TATGAGTGTGATTGGGCCTGACAGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
70920813 TATGAAAGTGATTGGGCTTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
70920841 TATGAATGTGATTGGGCCTAATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
70920869 TATGAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
70920888 AAAGGGGCCA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.24, C:0.14, G:0.34, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:70920888 original size:28 final size:28
Alignment explanation
Indices: 70920785--70920904 Score: 141
Period size: 28 Copynumber: 4.2 Consensus size: 28
70920775 ATTGCATGAC
* * **
70920785 TATGAGTGTGATTGGGCCTGACAGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* * *
70920813 TATGAAAGTGATTGGGCTTGATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
70920841 TATGAATGTGATTGGGCCTAATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* *
70920869 TATGAATGAGATTGGGCCTAAAGGGGCCA
1 TATGAATGTGATTGGGCCT-AATGGGCCA
*
70920898 AATGAAT
1 TATGAAT
70920905 AAGTATGTAT
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 66 0.82
29 14 0.17
ACGTcount: A:0.28, C:0.13, G:0.33, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:70931256 original size:23 final size:24
Alignment explanation
Indices: 70931211--70931261 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
70931201 ACACAAGTAA
*
70931211 AGTGGGTGAACTTTAAAAGGGCCT
1 AGTGGGTGAACTTTAAAAGGGCCC
*
70931235 AGTGGGTGAGCTTT-AAAGGGCCC
1 AGTGGGTGAACTTTAAAAGGGCCC
70931258 AGTG
1 AGTG
70931262 TGAGATCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.25, C:0.14, G:0.37, T:0.24
Consensus pattern (24 bp):
AGTGGGTGAACTTTAAAAGGGCCC
Found at i:70934273 original size:20 final size:19
Alignment explanation
Indices: 70934206--70934273 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 19
70934196 AACTTTACTT
70934206 CTCAAAAAATTATAAAAAAAGA
1 CTCAAAAAA-TAT-AAAAAA-A
* *
70934228 CT-AAAGAATATATAATAAA
1 CTCAAAAAATATA-AAAAAA
*
70934247 CTTAAAAAATATAAAAAAA
1 CTCAAAAAATATAAAAAAA
70934266 CCTCAAAA
1 -CTCAAAA
70934274 CCCTACAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
19 9 0.24
20 22 0.58
21 5 0.13
22 2 0.05
ACGTcount: A:0.66, C:0.10, G:0.03, T:0.21
Consensus pattern (19 bp):
CTCAAAAAATATAAAAAAA
Found at i:70940177 original size:42 final size:42
Alignment explanation
Indices: 70940107--70940188 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
70940097 TTTGCTCTCA
* * * *
70940107 TGAGCTTCTGTTTAACTCATATGAGTTTCCATTCAGCTTTAT
1 TGAGCTTCTATTAAACCCATATGAGTTTCCATTCAACTTTAT
* * *
70940149 TGAGCTTCTATTAAACCCTTATGGGTTTCCGTTCAACTTT
1 TGAGCTTCTATTAAACCCATATGAGTTTCCATTCAACTTT
70940189 TATGGGTTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.44
Consensus pattern (42 bp):
TGAGCTTCTATTAAACCCATATGAGTTTCCATTCAACTTTAT
Found at i:70944383 original size:55 final size:55
Alignment explanation
Indices: 70944274--70944422 Score: 178
Period size: 55 Copynumber: 2.7 Consensus size: 55
70944264 CATTAGGGTT
* *
70944274 TAAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGG-
1 TAAGGATACCATGTAAGACCATGCCAAGGCATGGC-ATTGATAAGGTTTATAAGGC
* * *
70944329 TAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAA-GTTACTATAAGGC
1 TAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGGTT--TATAAGGC
* * *
70944385 AAAGG-TCCCATGTAAGACCATGCCAAGGCATTGCATTG
1 TAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTG
70944423 GTGAGTTCAT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
53 3 0.04
54 7 0.09
55 66 0.82
56 4 0.05
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (55 bp):
TAAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGGTTTATAAGGC
Found at i:70946904 original size:47 final size:47
Alignment explanation
Indices: 70946826--70947212 Score: 616
Period size: 47 Copynumber: 8.3 Consensus size: 47
70946816 ACAAGATATG
70946826 TATATGTGATAAGGCC-AATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
70946872 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
70946919 TATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
70946966 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
70947013 TATATGTGATAGGGTCGAGTGACCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
70947060 TATATGTGATAAGGCCGAATGGCCAA-GTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
70947106 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
70947153 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
70947200 TAAATGTGATAAG
1 TATATGTGATAAG
70947213 TCCCGAAGGG
Statistics
Matches: 320, Mismatches: 19, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
46 59 0.18
47 261 0.82
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:70950128 original size:29 final size:29
Alignment explanation
Indices: 70950095--70950163 Score: 124
Period size: 29 Copynumber: 2.4 Consensus size: 29
70950085 TCCTTATTGA
70950095 GTCTAATTTTAATAGAAATAAAATTCATG
1 GTCTAATTTTAATAGAAATAAAATTCATG
70950124 GTCTAATTTTAATAGAAATAAAATTCATG
1 GTCTAATTTTAATAGAAATAAAATTCATG
70950153 GT-T-ATTTTAAT
1 GTCTAATTTTAAT
70950164 TTTGTATAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 8 0.20
28 1 0.03
29 31 0.77
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (29 bp):
GTCTAATTTTAATAGAAATAAAATTCATG
Found at i:70965362 original size:68 final size:70
Alignment explanation
Indices: 70965290--70965487 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
70965280 ACACCCTGTA
* * * *
70965290 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
70965352 ATAAAT
65 ATAAAT
*
70965358 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
70965423 ATAAAT
65 ATAAAT
*
70965429 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
70965488 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:70965401 original size:41 final size:41
Alignment explanation
Indices: 70965356--70965473 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
70965346 TGAAAGATAA
70965356 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
70965397 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
70965427 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
70965468 ATGTAG
1 ATGTAG
70965474 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:70965413 original size:71 final size:71
Alignment explanation
Indices: 70965324--70965487 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
70965314 GAGATGTATC
70965324 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70965389 AGGACA
66 AGGACA
70965395 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70965460 AGGACA
66 AGGACA
70965466 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
70965488 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:70967004 original size:55 final size:55
Alignment explanation
Indices: 70966896--70967075 Score: 154
Period size: 55 Copynumber: 3.3 Consensus size: 55
70966886 ATTAGGGTTT
* * *
70966896 AAGGATACCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATTGATAAGGTTTATAAGGC
* * * * *
70966951 AAGGATATCATGTTAGACCATGTCAAGACATGTC-ATTGATAA-GTTACTATAAGGTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATTGATAAGGTT--TATAAGG-C
* * * * * **
70967007 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GTTCGTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATTGATAAGGTTTATAAGGC
*
70967059 AAGTATACCATGTAAGA
1 AAGGATACCATGTAAGA
70967076 ACATATCGAG
Statistics
Matches: 100, Mismatches: 21, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
52 3 0.03
53 19 0.19
54 7 0.07
55 67 0.67
56 4 0.04
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACAATTGATAAGGTTTATAAGGC
Found at i:70967102 original size:108 final size:110
Alignment explanation
Indices: 70966903--70967103 Score: 273
Period size: 108 Copynumber: 1.8 Consensus size: 110
70966893 TTTAAGGATA
* *
70966903 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTTAGA
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* * * *
70966968 CCATGTCAAGACATGTCATTGATAAGTTACTATAAGGTAAAGGTC
66 ACATATCAAGACATGGCAATGATAAGTTACTATAAGGTAAAGGTC
* * *
70967013 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCGTAAGGCAAGTATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
70967075 AACATATCGAGACATGGCAATGGTAAGTT
65 AACATATCAAGACATGGCAATGATAAGTT
70967104 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 3 0.04
108 43 0.54
109 7 0.09
110 26 0.33
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
ACATATCAAGACATGGCAATGATAAGTTACTATAAGGTAAAGGTC
Found at i:70969590 original size:15 final size:14
Alignment explanation
Indices: 70969570--70969602 Score: 57
Period size: 14 Copynumber: 2.3 Consensus size: 14
70969560 CCAGTAAAAC
70969570 ATTTTTCGGAAAATG
1 ATTTTT-GGAAAATG
70969585 ATTTTTGGAAAATG
1 ATTTTTGGAAAATG
70969599 ATTT
1 ATTT
70969603 ACTTTTCTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.45
Consensus pattern (14 bp):
ATTTTTGGAAAATG
Found at i:70971077 original size:32 final size:32
Alignment explanation
Indices: 70971048--70971110 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
70971038 TCCAACAAGC
70971048 TTGAA-ACATAATAAATTCAAAATCTAACAAA
1 TTGAAGACATAATAAATTCAAAATCTAACAAA
* *
70971079 TTTAAGACATAATAATTTCAAAATCTAACAAA
1 TTGAAGACATAATAAATTCAAAATCTAACAAA
70971111 CTAATTTCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 4 0.14
32 25 0.86
ACGTcount: A:0.56, C:0.13, G:0.03, T:0.29
Consensus pattern (32 bp):
TTGAAGACATAATAAATTCAAAATCTAACAAA
Found at i:70975946 original size:42 final size:42
Alignment explanation
Indices: 70975887--70976004 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 42
70975877 TATGGTTAGT
*
70975887 TGAGATTACGTGTAAGACCATATCCGGGATATGACATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGACATCGATA
** * * *
70975929 TGAGATTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGACATCGATA
* ** *
70975972 TGAAATCCCATGTAAGACCATATCTGGGATATG
1 TGAGATTACGTGTAAGACCATATCTGGGATATG
70976005 GCATTGGTAT
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGACATCGATA
Found at i:70977389 original size:44 final size:44
Alignment explanation
Indices: 70977339--70977497 Score: 180
Period size: 44 Copynumber: 3.6 Consensus size: 44
70977329 TGTGTTTTCG
* *
70977339 TGTAAGACCATGTCTGGGACGTTGGCATCGACTTATGATTTATA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTACA
* * *
70977383 TGTAAGAGCACGTCCGGGAGGTTGGCATCGACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTACA
* * *
70977427 TGTAAGACCATGTCTGGAACAG-TGGCATCGA-TATTTGA-TTACA
1 TGTAAGACCACGTCTGGGAC-GTTGGCATCGACT-TATGATTTACA
** *
70977470 TGTAAGATAACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
70977498 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
43 28 0.29
44 67 0.70
45 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGACTTATGATTTACA
Found at i:70978171 original size:16 final size:16
Alignment explanation
Indices: 70978150--70978183 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
70978140 ATGTGCAAAT
70978150 TTGAGAAATTGGTAAG
1 TTGAGAAATTGGTAAG
70978166 TTGAGAAATTGGTAAG
1 TTGAGAAATTGGTAAG
70978182 TT
1 TT
70978184 TATAACATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (16 bp):
TTGAGAAATTGGTAAG
Found at i:70986409 original size:43 final size:42
Alignment explanation
Indices: 70986320--70986428 Score: 128
Period size: 43 Copynumber: 2.6 Consensus size: 42
70986310 TGAGATTATG
* ** *
70986320 TGTAAGACCATAATTGGGATATGGAATCGATATGAGATTTCG
1 TGTAAGACCATAACTGGGATATGGAATCGATATGAGATCCCA
* * * *
70986362 TGTAAGACCATAGCTGGGCTATTGGCATTGATATGAGATCCCA
1 TGTAAGACCATAACTGGGATA-TGGAATCGATATGAGATCCCA
*
70986405 TGTAAGACCATATCTGGGATATGG
1 TGTAAGACCATAACTGGGATATGG
70986429 CGTTGGTATG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 21 0.38
43 35 0.62
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATAACTGGGATATGGAATCGATATGAGATCCCA
Found at i:70986560 original size:20 final size:20
Alignment explanation
Indices: 70986522--70986560 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
70986512 TTTAAGTTGG
*
70986522 GAAAGACTATAGTATATTGT
1 GAAAGACTATAGTAAATTGT
* *
70986542 GAAAGATTATGGTAAATTG
1 GAAAGACTATAGTAAATTG
70986561 CAAGTTGGTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (20 bp):
GAAAGACTATAGTAAATTGT
Found at i:70989157 original size:100 final size:101
Alignment explanation
Indices: 70989019--70989206 Score: 308
Period size: 100 Copynumber: 1.9 Consensus size: 101
70989009 ACCGAAGCTA
*
70989019 TCTGATATGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTGGTACA-GATAG
1 TCTGATATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTAAACG-TAG
70989082 TAGCCTGCACTTAGTACTACACACGTGATTGAAGTTG
65 TAGCCTGCACTTAGTACTACACACGTGATTGAAGTTG
* * **
70989119 TCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATTATCTGGTAAACGTAGT
1 TCTGATATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTAAACGTAGT
70989184 AGCCTGCACTTAGTACTACACAC
66 AGCCTGCACTTAGTACTACACAC
70989207 ATGACCTAAA
Statistics
Matches: 81, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
100 42 0.52
101 38 0.47
102 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (101 bp):
TCTGATATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTAAACGTAGT
AGCCTGCACTTAGTACTACACACGTGATTGAAGTTG
Found at i:70989194 original size:50 final size:50
Alignment explanation
Indices: 70989030--70989215 Score: 216
Period size: 50 Copynumber: 3.7 Consensus size: 50
70989020 CTGATATGCA
* * ** *
70989030 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTGGTACA-G
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCTGGTAAACG
* * ** *
70989078 ATAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCTGGTATGCA
1 -TAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-TTATCTGGTAAACG
*
70989130 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAATTATCTGGTAAACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCTGGTAAACG
*
70989180 TAGTAGCCTGCACTTAGTACTACACACATGACCTAA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
70989216 AACCATCTTA
Statistics
Matches: 115, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
49 29 0.25
50 46 0.40
51 39 0.34
52 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCTGGTAAACG
Found at i:70989244 original size:52 final size:49
Alignment explanation
Indices: 70989028--70989244 Score: 161
Period size: 50 Copynumber: 4.3 Consensus size: 49
70989018 ATCTGATATG
*** * *
70989028 CATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCT-GTAAA
* * * *** **
70989077 GATAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCTGGTATG
1 CATAGTAGCCTGCACTTAGTACTACACACATGACCT-AA-CCATCT-GTAAA
** **
70989128 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAATTATCTGGTAAA
1 CATAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCT-GTAAA
*
70989178 CGTAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACCATCT-TAAACA
1 CATAGTAGCCTGCACTTAGTACTACACACATGACCT--AACCATCTGT-AA-A
*
70989230 CATAGTAGCTTGCAC
1 CATAGTAGCCTGCAC
70989245 ATATGTACAT
Statistics
Matches: 138, Mismatches: 22, Indels: 13
0.80 0.13 0.08
Matches are distributed among these distances:
49 30 0.22
50 45 0.33
51 42 0.30
52 21 0.15
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGTAAA
Found at i:70992166 original size:15 final size:15
Alignment explanation
Indices: 70992137--70992179 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
70992127 TATAGATAAC
* *
70992137 AAGAAAACCAGGATT
1 AAGAAATCCAAGATT
*
70992152 AAGAAGTCCAAGATT
1 AAGAAATCCAAGATT
*
70992167 GAGAAATCCAAGA
1 AAGAAATCCAAGA
70992180 GACAATATCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.51, C:0.14, G:0.21, T:0.14
Consensus pattern (15 bp):
AAGAAATCCAAGATT
Found at i:70995188 original size:30 final size:29
Alignment explanation
Indices: 70995153--70995226 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
70995143 CTTCGAGCTC
* *
70995153 GCACACCCAGTGCCGTATTTTTTCCAACAT
1 GCACACCCAGTGCCATA-TATTTCCAACAT
** *
70995183 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAACAT
**
70995212 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
70995227 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 25 0.64
30 14 0.36
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAACAT
Found at i:70996427 original size:21 final size:20
Alignment explanation
Indices: 70996385--70996438 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
70996375 AATGAACACT
*
70996385 TTTTTTTTC-TTT-TCTTTG
1 TTTTTCTTCATTTCTCTTTG
*
70996403 TTTTTCTTCATATTCTCTTTT
1 TTTTTCTTCAT-TTCTCTTTG
*
70996424 TTTTTTTTCATTTCT
1 TTTTTCTTCATTTCT
70996439 TTATTCTTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 8 0.27
19 1 0.03
20 6 0.20
21 15 0.50
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTTTCTTCATTTCTCTTTG
Found at i:71003081 original size:29 final size:29
Alignment explanation
Indices: 71003049--71003121 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
71003039 CTTCGAGCTC
* *
71003049 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
71003078 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
71003107 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
71003122 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:71004325 original size:21 final size:20
Alignment explanation
Indices: 71004283--71004336 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
71004273 AATGAACACT
*
71004283 TTTTTTTTC-TTT-TCTTTG
1 TTTTTCTTCATTTCTCTTTG
*
71004301 TTTTTCTTCATATTCTCTTTT
1 TTTTTCTTCAT-TTCTCTTTG
*
71004322 TTTTTTTTCATTTCT
1 TTTTTCTTCATTTCT
71004337 TTATTCTTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 8 0.27
19 1 0.03
20 6 0.20
21 15 0.50
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTTTCTTCATTTCTCTTTG
Found at i:71011885 original size:21 final size:21
Alignment explanation
Indices: 71011859--71011903 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
71011849 AGCACATAAT
71011859 GGTTGTTTATCTATGCATCCA
1 GGTTGTTTATCTATGCATCCA
*
71011880 GGTTGTTTATCTGTGCATCCA
1 GGTTGTTTATCTATGCATCCA
71011901 GGT
1 GGT
71011904 AGTATGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.42
Consensus pattern (21 bp):
GGTTGTTTATCTATGCATCCA
Found at i:71021212 original size:29 final size:29
Alignment explanation
Indices: 71021179--71021252 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
71021169 GTGACGAGAT
71021179 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
71021208 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
71021237 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
71021253 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:71021306 original size:28 final size:29
Alignment explanation
Indices: 71021236--71021310 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 29
71021226 CTGGAAATAT
* *
71021236 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** *
71021265 ATGGCACTGTGTGTGCG-GC-CTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTC-AAAGCGC
71021293 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
71021311 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
27 1 0.03
28 21 0.57
29 15 0.41
ACGTcount: A:0.23, C:0.21, G:0.35, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:71031269 original size:93 final size:93
Alignment explanation
Indices: 71031157--71031328 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71031147 CGCCCATAAG
* *
71031157 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71031222 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
71031250 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71031315 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
71031329 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:71031325 original size:46 final size:46
Alignment explanation
Indices: 71031150--71031325 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
71031140 TGTAACCCGC
* * *
71031150 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
71031196 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
71031246 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
71031289 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
71031326 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:71039802 original size:79 final size:80
Alignment explanation
Indices: 71039699--71039915 Score: 282
Period size: 79 Copynumber: 2.7 Consensus size: 80
71039689 AGCTACCGTT
*
71039699 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* *
71039764 ATTTAGTGACTCGCA
66 AATTAGTAACTCGCA
* * *
71039779 CAAATG-CTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
71039841 GAATTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* * * *
71039857 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTA
71039916 GCCCGGACAT
Statistics
Matches: 119, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
78 32 0.27
79 68 0.57
80 19 0.16
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
AATTAGTAACTCGCA
Found at i:71039922 original size:40 final size:40
Alignment explanation
Indices: 71039699--71039922 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
71039689 AGCTACCGTT
* *
71039699 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
71039739 CAAATGCCTTCGGGACTTAACCCAGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
71039779 CAAATG-CTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
71039818 CCAATGCCTTCGGG-CTTAGCCCAGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
71039857 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
71039898 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71039923 CATCATTCGA
Statistics
Matches: 159, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 67 0.42
40 78 0.49
41 12 0.08
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:71041889 original size:23 final size:23
Alignment explanation
Indices: 71041835--71041927 Score: 141
Period size: 23 Copynumber: 4.0 Consensus size: 23
71041825 CCTAGCCTCT
* * * *
71041835 TTTAGTAATTGGGGCAAAAGGCCT
1 TTTAATAACTGGGGCATAA-GCCC
71041859 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
71041882 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
71041905 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
71041928 ATTTGCACTT
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
23 49 0.75
24 16 0.25
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:71042006 original size:20 final size:20
Alignment explanation
Indices: 71041981--71042047 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
71041971 TTATGAATAC
71041981 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
71042001 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
71042021 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
71042041 ACCATGT
1 ATCATGT
71042048 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:71042012 original size:11 final size:11
Alignment explanation
Indices: 71041981--71042036 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
71041971 TTATGAATAC
71041981 ATCATGTGCAT
1 ATCATGTGCAT
*
71041992 ATCA--TACAT
1 ATCATGTGCAT
71042001 ATCATGTGCAT
1 ATCATGTGCAT
*
71042012 ATCA--TACAT
1 ATCATGTGCAT
*
71042021 GTCATGTGCAT
1 ATCATGTGCAT
71042032 ATCAT
1 ATCAT
71042037 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Done.