Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 235 of 335
Found at i:71045423 original size:42 final size:43
Alignment explanation
Indices: 71045356--71045474 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 43
71045346 AGGGTTACTA
* * *
71045356 AGATTTCATGTAAGACCATATCTGGGATATGGCAAT-GATATG
1 AGATTACATGTAAGACCATATCTGGGATATGGCAATCAATACG
* * * *
71045398 AGACTT-TATGTAAGGCCATAACTGGGCTATTGGC-ATCAATACG
1 AGA-TTACATGTAAGACCATATCTGGGATA-TGGCAATCAATACG
71045441 AGATTACATGTAAGACCATATCTGGGATATGGCA
1 AGATTACATGTAAGACCATATCTGGGATATGGCA
71045475 TTGGTAAGGT
Statistics
Matches: 62, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
42 30 0.48
43 32 0.52
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.29
Consensus pattern (43 bp):
AGATTACATGTAAGACCATATCTGGGATATGGCAATCAATACG
Found at i:71055224 original size:32 final size:31
Alignment explanation
Indices: 71055164--71055246 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 31
71055154 GTGGCTCGAG
* * * * *
71055164 TGTGGCTGTGTGGGTCACATGGGTAGGCCGA
1 TGTGGGTGTGTGGGCCACACGAGTAGGCCAA
*
71055195 -GTTGGTCGTGTGGGCCACACGAGTAAGGCCAA
1 TGTGGGT-GTGTGGGCCACACGAGT-AGGCCAA
71055227 TGTGGGTGTGTGGGCCACAC
1 TGTGGGTGTGTGGGCCACAC
71055247 AGGCACGTGG
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
30 4 0.10
31 14 0.33
32 19 0.45
33 5 0.12
ACGTcount: A:0.16, C:0.19, G:0.42, T:0.23
Consensus pattern (31 bp):
TGTGGGTGTGTGGGCCACACGAGTAGGCCAA
Found at i:71060285 original size:40 final size:40
Alignment explanation
Indices: 71060230--71060457 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
71060220 TGAATGATAC
* * *
71060230 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
71060270 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
71060310 TCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
71060350 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
71060390 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
71060429 CCTGGGTTAAGACCCGAAGGCAATTGTGC
1 CC-GGGCTAAGACCCGAAGGCATTTGTGC
71060458 TTGTGGTTAT
Statistics
Matches: 174, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 170 0.98
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:71063320 original size:22 final size:23
Alignment explanation
Indices: 71063274--71063326 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
71063264 AAATCTAAGT
*
71063274 TTTTAA-TTTTTTATCTTAAATA
1 TTTTAATTTTTTTATATTAAATA
71063296 TTTTAATTTTTTTATAATTAAAT-
1 TTTTAATTTTTTTAT-ATTAAATA
*
71063319 TTATAATT
1 TTTTAATT
71063327 ATTAAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 6 0.22
23 15 0.56
24 6 0.22
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTAATTTTTTTATATTAAATA
Found at i:71065953 original size:33 final size:33
Alignment explanation
Indices: 71065863--71065966 Score: 122
Period size: 33 Copynumber: 3.2 Consensus size: 33
71065853 AATATGCAAA
* *
71065863 ACAGTCTGGGCGTTAGCCCTATACAGTATCAGT
1 ACAGTCTGAGCCTTAGCCCTATACAGTATCAGT
* *
71065896 AGAGTCTGGGCCTTAGCCCTATACAGTATCAGT
1 ACAGTCTGAGCCTTAGCCCTATACAGTATCAGT
* *
71065929 ACAGTTTGAG-CTTAAG-CCTAATACAGTATTAGT
1 ACAGTCTGAGCCTT-AGCCCT-ATACAGTATCAGT
71065962 ACAGT
1 ACAGT
71065967 GTAATGCAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
32 6 0.10
33 57 0.90
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (33 bp):
ACAGTCTGAGCCTTAGCCCTATACAGTATCAGT
Found at i:71066441 original size:27 final size:27
Alignment explanation
Indices: 71066404--71066468 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
71066394 AAGGGAAAAA
* *
71066404 CAGTCATTTTAC-CTTACACGGGTATTT
1 CAGTAATTTTACAC-TACAAGGGTATTT
*
71066431 CGGTAATTTTACACTACAAGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
71066458 CAGTAATTTTA
1 CAGTAATTTTA
71066469 TAATTTGGGG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (27 bp):
CAGTAATTTTACACTACAAGGGTATTT
Found at i:71069545 original size:27 final size:27
Alignment explanation
Indices: 71069515--71069574 Score: 95
Period size: 27 Copynumber: 2.2 Consensus size: 27
71069505 CAAAACAGTT
*
71069515 ATTTTAC-CCTACAAGGGTATTTCGGTA
1 ATTTTACACC-ACAAGGGTATTTCGATA
71069542 ATTTTACACCACAAGGGTATTTCGATA
1 ATTTTACACCACAAGGGTATTTCGATA
71069569 ATTTTA
1 ATTTTA
71069575 TAAACAGAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 29 0.94
28 2 0.06
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (27 bp):
ATTTTACACCACAAGGGTATTTCGATA
Found at i:71069598 original size:26 final size:26
Alignment explanation
Indices: 71069525--71069602 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
71069515 ATTTTACCCT
* *
71069525 ACAAGGGTATTTCGGTAATTTTACACC
1 ACAAGGGTATTTCGGTAATTTTATA-A
*
71069552 ACAAGGGTATTTCGATAATTTTATAA
1 ACAAGGGTATTTCGGTAATTTTATAA
71069578 ACAGAGGGTA-TTCGGTAA-TTTATAA
1 ACA-AGGGTATTTCGGTAATTTTATAA
71069603 TCCGAGGTCT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
25 7 0.15
26 10 0.22
27 29 0.63
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (26 bp):
ACAAGGGTATTTCGGTAATTTTATAA
Found at i:71074616 original size:26 final size:26
Alignment explanation
Indices: 71074587--71074636 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
71074577 TTTTCATTAC
71074587 ATTTTAT-AGTTTTT-AGATTAATTTTT
1 ATTTTATCA-TTTTTAAG-TTAATTTTT
71074613 ATTTTATCATTTTTAAGTTAATTT
1 ATTTTATCATTTTTAAGTTAATTT
71074637 GAGTTCACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.02, G:0.06, T:0.64
Consensus pattern (26 bp):
ATTTTATCATTTTTAAGTTAATTTTT
Found at i:71076971 original size:22 final size:23
Alignment explanation
Indices: 71076920--71076975 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
71076910 GAGCTGATGT
* *
71076920 ACAGTAAGCTTTATTGAGTTGAA
1 ACAGTAAGCTCTATTGAGCTGAA
*
71076943 ACGGTAAGCTCTATTGAGCT-AA
1 ACAGTAAGCTCTATTGAGCTGAA
71076965 ACAGTAAGCTC
1 ACAGTAAGCTC
71076976 ATACGATCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 12 0.41
23 17 0.59
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (23 bp):
ACAGTAAGCTCTATTGAGCTGAA
Found at i:71077028 original size:24 final size:23
Alignment explanation
Indices: 71076946--71077033 Score: 74
Period size: 23 Copynumber: 3.8 Consensus size: 23
71076936 AGTTGAAACG
*
71076946 GTAAGCTC-TATTGAGCT-AAACA
1 GTAAGCTCTTA-TGAGCTAAAATA
* * * *
71076968 GTAAGCTCATACGATCTAAAATG
1 GTAAGCTCTTATGAGCTAAAATA
*
71076991 GTAAGCT-TCAATGAGCTAAAAATA
1 GTAAGCTCT-TATGAGCT-AAAATA
71077015 GTAAGCTCTTATGAGCTAA
1 GTAAGCTCTTATGAGCTAA
71077034 TATATCGGTA
Statistics
Matches: 51, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
22 12 0.24
23 19 0.37
24 19 0.37
25 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (23 bp):
GTAAGCTCTTATGAGCTAAAATA
Found at i:71081134 original size:2 final size:2
Alignment explanation
Indices: 71081122--71081176 Score: 83
Period size: 2 Copynumber: 27.5 Consensus size: 2
71081112 TATAAGATGT
* *
71081122 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
71081164 TA TA GA TA TA TA T
1 TA TA TA TA TA TA T
71081177 GTGTGTGTGT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (2 bp):
TA
Found at i:71081181 original size:2 final size:2
Alignment explanation
Indices: 71081176--71081206 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
71081166 TAGATATATA
71081176 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
71081207 ATGTATATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:71083050 original size:40 final size:40
Alignment explanation
Indices: 71082944--71083127 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
71082934 TGCTGGAAAT
* * * * * **
71082944 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
71082984 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
71083024 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
71083062 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
71083103 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
71083128 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:71091104 original size:40 final size:40
Alignment explanation
Indices: 71091055--71091157 Score: 104
Period size: 37 Copynumber: 2.6 Consensus size: 40
71091045 TGCTGGAAAT
* * * * **
71091055 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
* *
71091095 TATATCCGGGCTAAGA---GAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
*
71091132 TCTATCCGGGCTAAGACCCGAAGGCA
1 TATATCCGGGCTAAGACCCGAAGGCA
71091158 TTTGTGCAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
37 30 0.59
40 21 0.41
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.20
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTCAC
Found at i:71095016 original size:64 final size:64
Alignment explanation
Indices: 71094875--71095039 Score: 197
Period size: 64 Copynumber: 2.6 Consensus size: 64
71094865 GGAAACTTTT
* * * ** **
71094875 GCTTTGTAGAGGTTCGCTGGATTAGAATGGGGTTTCAGTATTGAATATTGTTAAGTAAATTATG
1 GCTTTGTAGAGGTTCGGTGGATGAGAATGGGGTTTCAATATCAAATATCATTAAGTAAATTATG
* * *
71094939 GCTTTG-CGAAGGTTTGGTGGATGAGAATGGGGTTTGAATATCAAATATCATTAAGTAAATTATG
1 GCTTTGTAG-AGGTTCGGTGGATGAGAATGGGGTTTCAATATCAAATATCATTAAGTAAATTATG
* * *
71095003 GCTTTGTAGAGGTTCGGTGCATGAGAACGGCGTTTCA
1 GCTTTGTAGAGGTTCGGTGGATGAGAATGGGGTTTCA
71095040 GTATAAGAAG
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
63 1 0.01
64 81 0.98
65 1 0.01
ACGTcount: A:0.27, C:0.08, G:0.30, T:0.35
Consensus pattern (64 bp):
GCTTTGTAGAGGTTCGGTGGATGAGAATGGGGTTTCAATATCAAATATCATTAAGTAAATTATG
Found at i:71105030 original size:15 final size:16
Alignment explanation
Indices: 71105010--71105047 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
71105000 AATTAGAAAG
71105010 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
*
71105025 ATGAAAATTTAATTAA
1 ATGAAAAGTTAATTAA
71105041 ATGAAAA
1 ATGAAAA
71105048 AGAAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:71118713 original size:55 final size:54
Alignment explanation
Indices: 71118595--71118698 Score: 145
Period size: 55 Copynumber: 1.9 Consensus size: 54
71118585 CATGGTTGGA
* * * **
71118595 CACACGGGCGTGTGCCATGGCTGTGTTTAAAAGTTAGTATTGTACACGGGTAGG
1 CACACGGGCATGTGCCATGGCCGTGTTTAAAAGTCAGTATTGTACACGACTAGG
*
71118649 CCACACGGGCATGTGCCATGGCCGTGTTTAAAAGTCAGTGTTGTACACGA
1 -CACACGGGCATGTGCCATGGCCGTGTTTAAAAGTCAGTATTGTACACGA
71118699 ACTAAGGGCA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (54 bp):
CACACGGGCATGTGCCATGGCCGTGTTTAAAAGTCAGTATTGTACACGACTAGG
Found at i:71124703 original size:68 final size:68
Alignment explanation
Indices: 71124594--71124729 Score: 272
Period size: 68 Copynumber: 2.0 Consensus size: 68
71124584 ATCCGAAGTA
71124594 AGTTTTTGAGTAATGGATCTTAGATTATGATTCGATTAGATCATGTTTTAAGTAAATTAAAATCA
1 AGTTTTTGAGTAATGGATCTTAGATTATGATTCGATTAGATCATGTTTTAAGTAAATTAAAATCA
71124659 TGC
66 TGC
71124662 AGTTTTTGAGTAATGGATCTTAGATTATGATTCGATTAGATCATGTTTTAAGTAAATTAAAATCA
1 AGTTTTTGAGTAATGGATCTTAGATTATGATTCGATTAGATCATGTTTTAAGTAAATTAAAATCA
71124727 TGC
66 TGC
71124730 TCTTTGTATG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (68 bp):
AGTTTTTGAGTAATGGATCTTAGATTATGATTCGATTAGATCATGTTTTAAGTAAATTAAAATCA
TGC
Found at i:71124964 original size:40 final size:39
Alignment explanation
Indices: 71124859--71124998 Score: 203
Period size: 40 Copynumber: 3.5 Consensus size: 39
71124849 TGGATGATAA
*
71124859 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-T
*
71124899 CCGGGCTAAG-CCCAAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
71124938 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
71124978 CCGGGCTAAGTCCCGAAGGCA
1 CCGGGCTAAGTCCCGAAGGCA
71124999 CTTGAGCAAG
Statistics
Matches: 92, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
39 33 0.36
40 59 0.64
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:71125025 original size:79 final size:79
Alignment explanation
Indices: 71124863--71125035 Score: 199
Period size: 79 Copynumber: 2.2 Consensus size: 79
71124853 TGATAACCGG
* * * * *
71124863 GCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCAAAGGCATTTGTGCGA
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGCACTTGAGCAA
*
71124928 GCTACTATATCCGG
66 GCTACTATATCCGA
* *
71124942 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCACTTGAGC
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCAAAGGCACTTGAGC
*
71125006 AAG-TAGTTATATCC-A
64 AAGCTA-CTATATCCGA
* *
71125021 GCTAAATTCCGAAGG
1 GCTAAGTCCCGAAGG
71125036 TACTTGGTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
78 2 0.03
79 55 0.69
80 23 0.29
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGCACTTGAGCAA
GCTACTATATCCGA
Found at i:71134909 original size:31 final size:31
Alignment explanation
Indices: 71134874--71134937 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
71134864 CCTTTTCATG
71134874 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
71134905 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
71134936 TT
1 TT
71134938 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:71135180 original size:24 final size:24
Alignment explanation
Indices: 71135129--71135271 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
71135119 GCTTTATCAT
*
71135129 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
71135154 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
71135178 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
71135201 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
71135225 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
71135249 ATAATTGGGGCGTAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
71135272 TCACCTCCTC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
23 23 0.21
24 74 0.68
25 12 0.11
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:71135208 original size:47 final size:48
Alignment explanation
Indices: 71135129--71135270 Score: 189
Period size: 47 Copynumber: 3.0 Consensus size: 48
71135119 GCTTTATCAT
* *
71135129 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
71135178 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
* * *
71135225 ATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCGTAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
71135271 TTCACCTCCT
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
47 44 0.52
48 29 0.34
49 12 0.14
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:71135229 original size:71 final size:72
Alignment explanation
Indices: 71135128--71135271 Score: 202
Period size: 71 Copynumber: 2.0 Consensus size: 72
71135118 TGCTTTATCA
*
71135128 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
71135193 GCCCTTT
66 GCCCTTT
* * ** * *
71135200 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCGTA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
71135263 AGCCCTTT
65 AGCCCTTT
71135271 T
1 T
71135272 TCACCTCCTC
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
71 51 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:71135346 original size:20 final size:20
Alignment explanation
Indices: 71135321--71135381 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
71135311 TTATGATTAC
71135321 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
71135341 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
71135361 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
71135381 A
1 A
71135382 CCTTATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:71135456 original size:25 final size:25
Alignment explanation
Indices: 71135424--71135471 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
71135414 ATACATAAAC
* * *
71135424 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
71135449 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
71135472 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:71142884 original size:27 final size:27
Alignment explanation
Indices: 71142826--71143227 Score: 220
Period size: 27 Copynumber: 14.9 Consensus size: 27
71142816 TTAGTTTACC
** * * *
71142826 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
71142853 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* **** *
71142880 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* **** *
71142907 GAATTACCGTTTTACCCTCAATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ** *** ** *
71142934 GAATTATTATTTTACCCTTAATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* **** *
71142961 CAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *
71142988 AAATTACTAAAATACCCTCGGTTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* *
71143015 AAATTACCAAAATACCCTTGA-TCAGTA
1 AAATTACCAAAATACCCTCGATTTA-TA
* * *
71143042 AAATTACCAAAATACCCTAG-TCTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * * * *
71143068 AAATTGCTAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
71143095 AAATTA-CAGAAATACCCTCAATTTGTA
1 AAATTACCA-AAATACCCTCGATTTATA
* *
71143122 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
71143149 AAATTACCAAAATACCACTAG-TTTGTG
1 AAATTACCAAAATACC-CTCGATTTATA
* * * *
71143176 CAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
71143203 AAATTACCAAAATACCCTTGATTTA
1 AAATTACCAAAATACCCTCGATTTA
71143228 CAGAGTTACA
Statistics
Matches: 302, Mismatches: 64, Indels: 18
0.79 0.17 0.05
Matches are distributed among these distances:
26 26 0.09
27 273 0.90
28 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:71143031 original size:54 final size:53
Alignment explanation
Indices: 71142973--71143220 Score: 266
Period size: 54 Copynumber: 4.6 Consensus size: 53
71142963 ATTACCGTTT
** * * *
71142973 TACCCTCGATTTACAAAATTACTAAAATACCCTCGGTTTATAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAA
* ** * * *
71143027 TACCCTTGATCAGTAAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAA
* * *
71143080 TACCCTTGGTTTGTAAAATTA-CAGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCA-AAATACCCT-AGTTTGTAAAATTACCAAAA
* ** *
71143134 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGCAATTACCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATACC-CTAGTTTGTAAAATTACCAAAA
*
71143188 TACCCTCAATTTGTAAAATTACCAAAATACCCT
1 TACCCTCGATTTGTAAAATTACCAAAATACCCT
71143221 TGATTTACAG
Statistics
Matches: 162, Mismatches: 26, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
52 2 0.01
53 44 0.27
54 110 0.68
55 6 0.04
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (53 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAA
Found at i:71143058 original size:81 final size:80
Alignment explanation
Indices: 71142973--71143247 Score: 279
Period size: 81 Copynumber: 3.4 Consensus size: 80
71142963 ATTACCGTTT
* ** *
71142973 TACCCTCGATTTACAAAATTACTAAAATACCCTCGGTTTATAAAATTACCAAAATACCCTTGATC
1 TACCCTCGATTTACAAAATTACTAAAATACCCT-GGTTTGTAAAATTACCAAAATACCCTCAATT
*
71143038 AGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * ** *
71143054 TACCCTAG-TCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTA-CAGAAATACCCTCAAT
1 TACCCTCGATTTACAAAATTACTAAAATACCC-TGGTTTGTAAAATTACCA-AAATACCCTCAAT
71143117 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
* ** * * ** *
71143134 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGCAATTACCGAAATACCCTCAAT
1 TACCCTCGA-TTTACAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCAAAATACCCTCAAT
71143198 TTGTAAAATTACCAAAA
64 TTGTAAAATTACCAAAA
* * *
71143215 TACCCTTGATTTACAGAGTTAC-AGAAATACCCT
1 TACCCTCGATTTACAAAATTACTA-AAATACCCT
71143248 TGACTTTCTA
Statistics
Matches: 161, Mismatches: 25, Indels: 17
0.79 0.12 0.08
Matches are distributed among these distances:
79 2 0.01
80 66 0.41
81 90 0.56
82 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:71143384 original size:27 final size:27
Alignment explanation
Indices: 71143353--71143439 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 27
71143343 TGACTAAAAT
* *
71143353 ACCCCTATTAGGTAAAAAGACCGTAAA
1 ACCCCTATAAAGTAAAAAGACCGTAAA
* *
71143380 GCCCCTATAAAGTAAAGAGACCGTAAA
1 ACCCCTATAAAGTAAAAAGACCGTAAA
* ** ** *
71143407 ACCCCTGTAGGGTAAAGTGACCGTAAT
1 ACCCCTATAAAGTAAAAAGACCGTAAA
71143434 ACCCCT
1 ACCCCT
71143440 GTATGGTAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.18
Consensus pattern (27 bp):
ACCCCTATAAAGTAAAAAGACCGTAAA
Found at i:71143440 original size:27 final size:27
Alignment explanation
Indices: 71143371--71143454 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
71143361 TAGGTAAAAA
* * ** *
71143371 GACCGTAAAGCCCCTATAAAGTAAAGA
1 GACCGTAAAACCCCTGTAGGGTAAAGT
71143398 GACCGTAAAACCCCTGTAGGGTAAAGT
1 GACCGTAAAACCCCTGTAGGGTAAAGT
* * *
71143425 GACCGTAATACCCCTGTATGGTAAAAT
1 GACCGTAAAACCCCTGTAGGGTAAAGT
71143452 GAC
1 GAC
71143455 GAATATGCCC
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (27 bp):
GACCGTAAAACCCCTGTAGGGTAAAGT
Found at i:71144377 original size:25 final size:26
Alignment explanation
Indices: 71144254--71144415 Score: 233
Period size: 26 Copynumber: 6.3 Consensus size: 26
71144244 GAGGAAGTGC
71144254 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
71144280 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
71144306 AAAAGGGCTTGTGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
71144332 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
71144358 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
71144383 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
71144406 AAAAGAGGCT
1 AAAAG-GGCT
71144416 AGGCCTCTAG
Statistics
Matches: 123, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
23 5 0.04
24 7 0.06
25 31 0.25
26 80 0.65
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:71144607 original size:42 final size:42
Alignment explanation
Indices: 71144548--71144639 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
71144538 TAGTCTCCCC
* * *
71144548 AAATGGGCTTGCATACATTCATTGGTATTTCATGTAATATTG
1 AAATGGGCTTGCATACATCCATTGGCATTACATGTAATATTG
*
71144590 AAATGGGCTTGCATACATCCATTGGCATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGGCATTACATGTAATATTG
71144632 AAATGGGC
1 AAATGGGC
71144640 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGGCATTACATGTAATATTG
Found at i:71144740 original size:31 final size:31
Alignment explanation
Indices: 71144663--71144741 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
71144653 CGTTTACAGT
*
71144663 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
71144694 AAAGGATTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
71144725 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
71144742 AACCATTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:71152850 original size:10 final size:10
Alignment explanation
Indices: 71152826--71152864 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
71152816 TTTAACCTAT
71152826 TCAAAACATG
1 TCAAAACATG
71152836 ATCAAACACAT-
1 -TCAAA-ACATG
71152847 TCAAAACATG
1 TCAAAACATG
71152857 TCAAAACA
1 TCAAAACA
71152865 ATCATCCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 4 0.15
10 13 0.50
11 5 0.19
12 4 0.15
ACGTcount: A:0.54, C:0.23, G:0.05, T:0.18
Consensus pattern (10 bp):
TCAAAACATG
Found at i:71154866 original size:14 final size:14
Alignment explanation
Indices: 71154847--71154888 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
71154837 TTTTTCTTTT
71154847 TATTATAACATATA
1 TATTATAACATATA
*
71154861 TATTATATA-ATACA
1 TATTATA-ACATATA
71154875 TATTATAACATATA
1 TATTATAACATATA
71154889 AGTTTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 1 0.04
14 22 0.92
15 1 0.04
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TATTATAACATATA
Found at i:71158368 original size:44 final size:44
Alignment explanation
Indices: 71158310--71158395 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
71158300 TGTATGAGGT
* *
71158310 ATCCGAGCTTGTTGATTTGGTCCGAGTTCATTATAGATGCGAGC
1 ATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATAGATGCGAGC
*
71158354 ATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGATGCGA
1 ATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATAGATGCGA
71158396 TATATGTAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.33
Consensus pattern (44 bp):
ATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATAGATGCGAGC
Found at i:71168418 original size:18 final size:18
Alignment explanation
Indices: 71168375--71168418 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
71168365 TATATAACAA
*
71168375 AAAAAATTATTTTTCAAT
1 AAAAAATTATTTTTCAAC
*
71168393 AAAAAATTATTTTTGAAC
1 AAAAAATTATTTTTCAAC
*
71168411 AAAGAATT
1 AAAAAATT
71168419 TATAAATTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (18 bp):
AAAAAATTATTTTTCAAC
Found at i:71172379 original size:184 final size:182
Alignment explanation
Indices: 71172072--71172414 Score: 587
Period size: 184 Copynumber: 1.9 Consensus size: 182
71172062 AAAACATATA
* * *
71172072 TAATTGAAGGACCAATTGTGTAATTGGACCCTCCTTAAAGGCCCACGATAGGAATGATGTGGAAT
1 TAATTGAAGGACCAATTATGTAAGTGGACCCTCCTTAAAGGCCAACGATAGGAATGATGTGGAAT
71172137 TATCTAGATTTTGGTAAATTGCAACTAAGTCCGAATTAATTAAAAATGGACTAAATCATAAAAGT
66 TATCTAGATTTTGGTAAATTGCAACTAAGTCCGAATTAATTAAAAATGGACTAAATCATAAAAGT
71172202 TGAAAAAGATGGTTTCTATTAGTTAAAAAGGTAGATCAATATACCTATATGC
131 TGAAAAAGATGGTTTCTATTAGTTAAAAAGGTAGATCAATATACCTATATGC
* * *
71172254 TAATTGAAGGACCAATTATGTAAGTGGACCCTCCTTAAGGGGCCAAATGGTAGGAATGATGTGGA
1 TAATTGAAGGACCAATTATGTAAGTGGACCCTCCTTAA-AGGCC-AACGATAGGAATGATGTGGA
* *
71172319 ATTATCTAGATTTTGGTAAATTGCAACTAGGTTCGAATTAATTAAAAATGGACTAAATCATAAAA
64 ATTATCTAGATTTTGGTAAATTGCAACTAAGTCCGAATTAATTAAAAATGGACTAAATCATAAAA
*
71172384 TTTGAAAAAGATGGTTTCTATTAGTTAAAAA
129 GTTGAAAAAGATGGTTTCTATTAGTTAAAAA
71172415 TGTAAAGGTA
Statistics
Matches: 150, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
182 36 0.24
183 4 0.03
184 110 0.73
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (182 bp):
TAATTGAAGGACCAATTATGTAAGTGGACCCTCCTTAAAGGCCAACGATAGGAATGATGTGGAAT
TATCTAGATTTTGGTAAATTGCAACTAAGTCCGAATTAATTAAAAATGGACTAAATCATAAAAGT
TGAAAAAGATGGTTTCTATTAGTTAAAAAGGTAGATCAATATACCTATATGC
Found at i:71174115 original size:11 final size:11
Alignment explanation
Indices: 71174099--71174128 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
71174089 GCAATTTTGT
71174099 AATTAAATCAA
1 AATTAAATCAA
*
71174110 AATTAAAACAA
1 AATTAAATCAA
71174121 AATTAAAT
1 AATTAAAT
71174129 TGAAAAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (11 bp):
AATTAAATCAA
Found at i:71176301 original size:42 final size:42
Alignment explanation
Indices: 71176223--71176302 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 42
71176213 ACATAGCTGC
* *
71176223 GTGTATCAACTCAGAGAGTTACACGGCCTGACACACGGTCAT
1 GTGTAGCAACTCAGAGAGTTACACGGCCAGACACACGGTCAT
* * * *
71176265 GTGTAGCAACTCAGTGAGTTACATGGGCAGAGACACGG
1 GTGTAGCAACTCAGAGAGTTACACGGCCAGACACACGG
71176303 GTTGGGACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 32 1.00
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.20
Consensus pattern (42 bp):
GTGTAGCAACTCAGAGAGTTACACGGCCAGACACACGGTCAT
Found at i:71176708 original size:21 final size:21
Alignment explanation
Indices: 71176683--71176730 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
71176673 CAGCCAACGT
* *
71176683 ACACAGGCGTGTGGAGTAGCC
1 ACACAGACGTGTGGAATAGCC
*
71176704 ACACAGACGTGTGGAATGGCC
1 ACACAGACGTGTGGAATAGCC
71176725 ACACAG
1 ACACAG
71176731 CCATGTTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.33, T:0.12
Consensus pattern (21 bp):
ACACAGACGTGTGGAATAGCC
Found at i:71177055 original size:13 final size:13
Alignment explanation
Indices: 71177037--71177061 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71177027 GTTGAAGGTG
71177037 GATATGAGTTTTA
1 GATATGAGTTTTA
71177050 GATATGAGTTTT
1 GATATGAGTTTT
71177062 CAAGTGATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (13 bp):
GATATGAGTTTTA
Found at i:71179405 original size:49 final size:50
Alignment explanation
Indices: 71179333--71179459 Score: 154
Period size: 49 Copynumber: 2.6 Consensus size: 50
71179323 GAGATGTGTC
*
71179333 AGTGTAAGACCATGTCTAGGACATGGCATT-GGCAC-GGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATTCGGC-CTCGAT-TGTGAGAGCT
* * * *
71179383 AGTGTAAGACC-TGTCTAAGACATGGC-TTCGGCCTCGATTTTGATAGTT
1 AGTGTAAGACCATGTCTAGGACATGGCATTCGGCCTCGATTGTGAGAGCT
*
71179431 AGTGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTAGGACATGGCAT
71179460 CCACTTGATG
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
48 21 0.32
49 33 0.50
50 12 0.18
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTAGGACATGGCATTCGGCCTCGATTGTGAGAGCT
Found at i:71182948 original size:40 final size:40
Alignment explanation
Indices: 71182893--71183056 Score: 204
Period size: 40 Copynumber: 4.1 Consensus size: 40
71182883 TGAATGATAC
* * * *
71182893 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
71182933 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
71182973 CTGGGTTAAGACCCGAAGGCATTTGTACGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
71183013 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
71183053 CCGG
1 CCGG
71183057 CTAAATTCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
40 105 0.98
41 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:71187399 original size:31 final size:32
Alignment explanation
Indices: 71187348--71187423 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 32
71187338 TTTAATTTAA
* ** *
71187348 TCAATTTTAGTCTTTTTACTTTT-TAAATTGG
1 TCAATTTTAGTCCTCCTACTTTTCAAAATTGG
*
71187379 TCAATTTTAGTCCTCCTACTTTTCAAAATTTG
1 TCAATTTTAGTCCTCCTACTTTTCAAAATTGG
*
71187411 -AAATTTTAGTCCT
1 TCAATTTTAGTCCT
71187424 AACCTAATCA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 32 0.84
32 6 0.16
ACGTcount: A:0.25, C:0.16, G:0.08, T:0.51
Consensus pattern (32 bp):
TCAATTTTAGTCCTCCTACTTTTCAAAATTGG
Found at i:71189813 original size:23 final size:23
Alignment explanation
Indices: 71189787--71189830 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
71189777 TGAATTTGAA
*
71189787 CAAAAAAATTAGAGCATTTTTCT
1 CAAAAAAATTAGACCATTTTTCT
**
71189810 CAAATGAATTAGACCATTTTT
1 CAAAAAAATTAGACCATTTTT
71189831 AGAAGCCAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (23 bp):
CAAAAAAATTAGACCATTTTTCT
Found at i:71191763 original size:3 final size:3
Alignment explanation
Indices: 71191703--71191751 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
71191693 CAAATTGAAT
* *
71191703 TAA TAA TGA TAA -AA -AA TAA TAA TTA TAA TAA TAA -AA TAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
71191746 TAA TAA
1 TAA TAA
71191752 AATTCAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 6 0.15
3 30 0.77
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:71191766 original size:15 final size:16
Alignment explanation
Indices: 71191727--71191777 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 16
71191717 AATAATAATT
71191727 ATAATAATAAAA-T-A
1 ATAATAATAAAATTCA
71191741 ATAAATAATAAAATTCA
1 AT-AATAATAAAATTCA
*
71191758 ATAAT-ATAACATTCCA
1 ATAATAATAAAATT-CA
71191774 ATAA
1 ATAA
71191778 CTCATTACCA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
14 2 0.06
15 17 0.53
16 10 0.31
17 3 0.09
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (16 bp):
ATAATAATAAAATTCA
Found at i:71194773 original size:43 final size:43
Alignment explanation
Indices: 71194707--71194798 Score: 157
Period size: 43 Copynumber: 2.1 Consensus size: 43
71194697 TATTTAAGAA
* *
71194707 CTTATACAAAATCATATAACGATGCTAATGTCCCAGACATGGT
1 CTTACACAAAATCATATAACGATGCCAATGTCCCAGACATGGT
*
71194750 CTTACACAAAATCATATAACGATGCCAATGTCCCATACATGGT
1 CTTACACAAAATCATATAACGATGCCAATGTCCCAGACATGGT
71194793 CTTACA
1 CTTACA
71194799 TGTAATCTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (43 bp):
CTTACACAAAATCATATAACGATGCCAATGTCCCAGACATGGT
Found at i:71196789 original size:28 final size:27
Alignment explanation
Indices: 71196749--71196823 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 27
71196739 GCAATCAAAT
* *
71196749 ATGGCACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGC-AAATATTGAGA
71196777 ATGGCACTTAGTGTGCAAGATATTGAGA
1 ATGGCACTTAGTGTGCAA-ATATTGAGA
* *
71196805 ATGACTCTTAGTGTGCAAA
1 ATGGCACTTAGTGTGCAAA
71196824 ATATCGAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 3 0.07
28 39 0.93
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (27 bp):
ATGGCACTTAGTGTGCAAATATTGAGA
Found at i:71196827 original size:28 final size:28
Alignment explanation
Indices: 71196766--71196827 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
71196756 TCAGTGTACG
*
71196766 AAATATTGAGAATGGCACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
* *
71196794 AGATATTGAGAATGACTCTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
71196822 AAATAT
1 AAATAT
71196828 CGAATAATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.31
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAGTGTGCA
Found at i:71197260 original size:21 final size:22
Alignment explanation
Indices: 71197229--71197269 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
71197219 GAATGTATTG
*
71197229 TGATGTATGTGGAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
*
71197251 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGCAAATGAAA
71197270 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGCAAATGAAATA
Found at i:71204202 original size:20 final size:20
Alignment explanation
Indices: 71204177--71204231 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
71204167 AGCTTCTCTG
71204177 TTCTTTTACTCCTTT-TTTTT
1 TTCTTTTACT-CTTTCTTTTT
*
71204197 TTCTTTT-GTCTTTCGTTTTT
1 TTCTTTTACTCTTTC-TTTTT
*
71204217 TTCTTTTATTCTTTC
1 TTCTTTTACTCTTTC
71204232 ATTTGTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 4 0.13
19 1 0.03
20 19 0.63
21 6 0.20
ACGTcount: A:0.04, C:0.18, G:0.04, T:0.75
Consensus pattern (20 bp):
TTCTTTTACTCTTTCTTTTT
Found at i:71204229 original size:21 final size:20
Alignment explanation
Indices: 71204192--71204240 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
71204182 TTACTCCTTT
*
71204192 TTTTTTTCTTTTGTCTTTCG
1 TTTTTTTCTTTTGTCTTTCA
*
71204212 TTTTTTTCTTTTATTCTTTCA
1 TTTTTTTCTTTT-GTCTTTCA
71204233 TTTGTTTT
1 TTT-TTTT
71204241 ATTTATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 12 0.48
21 9 0.36
22 4 0.16
ACGTcount: A:0.04, C:0.12, G:0.06, T:0.78
Consensus pattern (20 bp):
TTTTTTTCTTTTGTCTTTCA
Found at i:71207034 original size:27 final size:27
Alignment explanation
Indices: 71207004--71207074 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
71206994 ACAAAATTAT
*
71207004 TATTTTGCCCTTATATGGTAAAATGAC
1 TATTTTGCCCCTATATGGTAAAATGAC
* * *
71207031 TATTTTGCCCGTATGTGGTAAGATGAC
1 TATTTTGCCCCTATATGGTAAAATGAC
71207058 TATTTTGCCCCTATATG
1 TATTTTGCCCCTATATG
71207075 AGGTATTTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.41
Consensus pattern (27 bp):
TATTTTGCCCCTATATGGTAAAATGAC
Found at i:71216259 original size:30 final size:30
Alignment explanation
Indices: 71216202--71216259 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
71216192 AATCTCGAGC
*
71216202 TTAGGGGCAAAAATGTAAATATGCAAAAGT
1 TTAGGGGCAAAAATGTAAATATCCAAAAGT
* * * *
71216232 TTAGGGGTAAAATTGTAATTTTCCAAAA
1 TTAGGGGCAAAAATGTAAATATCCAAAA
71216260 TTTGAGTTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (30 bp):
TTAGGGGCAAAAATGTAAATATCCAAAAGT
Found at i:71216729 original size:46 final size:46
Alignment explanation
Indices: 71216679--71216807 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
71216669 TGGTTGAGCA
* *
71216679 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
71216725 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * *
71216771 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71216808 GCGGGTTACA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
Found at i:71219172 original size:40 final size:40
Alignment explanation
Indices: 71219107--71219273 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
71219097 TCTTCGGAAT
* ** *
71219107 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
71219146 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
71219186 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
71219226 TTAGCCCGGATATAATC-ACTAGCATAAA-GCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
71219265 TTAGCCCGG
1 TTAGCCCGG
71219274 GTATCATTCA
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 22 0.19
40 90 0.80
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:71227332 original size:40 final size:40
Alignment explanation
Indices: 71227268--71227474 Score: 285
Period size: 40 Copynumber: 5.2 Consensus size: 40
71227258 TCTTCGGAAT
* * *
71227268 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
71227307 TTAACCCGGGTATAGCAACTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
71227347 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCAGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
*
71227387 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
71227427 TTAGCCCGGATATAATC-ACTAGCATAAA-GCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
71227466 TTAGCCCGG
1 TTAGCCCGG
71227475 GTATCATTCA
Statistics
Matches: 151, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 22 0.15
40 128 0.85
41 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:71234463 original size:42 final size:41
Alignment explanation
Indices: 71234409--71234510 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 41
71234399 CGAGACTATG
71234409 TGTAACGACATATCTAGGATATGACATC-ATTATGAGATTTCA
1 TGTAA-GACATATCTAGGATATGACATCGA-TATGAGATTTCA
* * *
71234451 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCG
1 TGTAAGA-CATATCTAGGATATGACATCGATATGAGATTTCA
*
71234493 TGTAAGATCATAGCTAGG
1 TGTAAGA-CATATCTAGG
71234511 CTATTGGCAT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 2 0.04
42 49 0.94
43 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (41 bp):
TGTAAGACATATCTAGGATATGACATCGATATGAGATTTCA
Found at i:71257395 original size:24 final size:24
Alignment explanation
Indices: 71257368--71257423 Score: 58
Period size: 27 Copynumber: 2.2 Consensus size: 24
71257358 GATTCGGAGG
*
71257368 ACGTACTGTGCTAGTGGCTTTGCC
1 ACGTACCGTGCTAGTGGCTTTGCC
* *
71257392 ACGTTTTACCGTTCTGGTGGCTTTGCC
1 ACG---TACCGTGCTAGTGGCTTTGCC
71257419 ACGTA
1 ACGTA
71257424 TTCGGACATT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
24 5 0.19
27 21 0.81
ACGTcount: A:0.12, C:0.25, G:0.27, T:0.36
Consensus pattern (24 bp):
ACGTACCGTGCTAGTGGCTTTGCC
Found at i:71258058 original size:54 final size:54
Alignment explanation
Indices: 71257980--71258087 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
71257970 GTAATCAAAG
71257980 ATAACAAACATTTTGATAAGTTAATTTCAAATGTAATAACGGAATGGGTTTAAC
1 ATAACAAACATTTTGATAAGTTAATTTCAAATGTAATAACGGAATGGGTTTAAC
* *
71258034 ATAACAAACGTTTTGATAAGTTAATTTCAGATGTAATAACGGAATGGGTTTAAC
1 ATAACAAACATTTTGATAAGTTAATTTCAAATGTAATAACGGAATGGGTTTAAC
71258088 TTAAAAAATG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (54 bp):
ATAACAAACATTTTGATAAGTTAATTTCAAATGTAATAACGGAATGGGTTTAAC
Found at i:71265581 original size:20 final size:20
Alignment explanation
Indices: 71265556--71265599 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
71265546 TATTTATCTA
71265556 CATGTTTAAATGGCTACATT
1 CATGTTTAAATGGCTACATT
71265576 CATGTTTAAATGGCTACATT
1 CATGTTTAAATGGCTACATT
71265596 -ATGT
1 CATGT
71265600 ATTTAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (20 bp):
CATGTTTAAATGGCTACATT
Found at i:71267572 original size:16 final size:16
Alignment explanation
Indices: 71267551--71267582 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
71267541 TAACACATCA
71267551 AAGTCGATGCCATGTC
1 AAGTCGATGCCATGTC
71267567 AAGTCGATGCCATGTC
1 AAGTCGATGCCATGTC
71267583 CCAGACAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (16 bp):
AAGTCGATGCCATGTC
Found at i:71267926 original size:46 final size:47
Alignment explanation
Indices: 71267808--71267930 Score: 133
Period size: 48 Copynumber: 2.6 Consensus size: 47
71267798 GTCTTAATGC
* * **
71267808 CGATCCATGTCCCAGACATGCCTTACACTGGCTGGTATATCTCGATGT
1 CGATACATGTCCCAGACATGTCTTACACTGGCTGCAATATCTCGA-GT
* * *
71267856 CGATACATGTCCTAGACATATCTTACACTGGCTCGCAATATGT-G-GT
1 CGATACATGTCCCAGACATGTCTTACACTGGCT-GCAATATCTCGAGT
* *
71267902 CGATGCATTTCCCAGACATGTCTTACACT
1 CGATACATGTCCCAGACATGTCTTACACT
71267931 AGCACACATA
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
46 27 0.43
48 30 0.48
49 6 0.10
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
CGATACATGTCCCAGACATGTCTTACACTGGCTGCAATATCTCGAGT
Found at i:71270716 original size:18 final size:18
Alignment explanation
Indices: 71270693--71270728 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
71270683 TTCTTGGGTG
*
71270693 GTAGTCGATTATCAACTC
1 GTAGTCCATTATCAACTC
*
71270711 GTAGTCCTTTATCAACTC
1 GTAGTCCATTATCAACTC
71270729 CAACCATCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (18 bp):
GTAGTCCATTATCAACTC
Found at i:71275393 original size:28 final size:28
Alignment explanation
Indices: 71275328--71275426 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
71275318 TCATGAATTG
* * *
71275328 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
71275357 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
71275385 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
71275413 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71275427 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:71278339 original size:49 final size:47
Alignment explanation
Indices: 71278223--71278537 Score: 196
Period size: 49 Copynumber: 6.7 Consensus size: 47
71278213 GGGATAAGAT
* * ** * * *
71278223 GCCGATGCCATGTCCCAGACATAGTCTTACTCTGGCT-AAAACATCAAA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTAACTCACAATATC-AG
*
71278271 GTCGATGCCATGTCCCAGACAGGTCTTACACTAACTTC-CATATATCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAAC-TCACA-ATATC-AG
* * ** *
71278320 GCCGATGCCATGTCCCAGACATGTCTTACAGTGTCTCTCATATATCAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAACTCACA-ATATCAG
* * * *
71278368 TGTCGATGCTATGTCCCAGTCAGGTCTTACACTAACACACAATA--A-
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTAACTCACAATATCAG
* * * *** *
71278413 GCTGACGCCATGTCCCAGACAGGTCTTACACTAGCTTGTAATCTCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAACTCACAATATC-AG
* * * * * * *
71278461 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTCTC-GTCTCAAT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAACTCACAATATC-AG
* *
71278507 TCCGATG-CATGTCCCAGACATGTCTTACACT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT
71278538 GGTTGGTATA
Statistics
Matches: 214, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
44 32 0.15
46 35 0.16
47 38 0.18
48 35 0.16
49 74 0.35
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTAACTCACAATATCAG
Found at i:71278392 original size:98 final size:97
Alignment explanation
Indices: 71278223--71278403 Score: 247
Period size: 98 Copynumber: 1.9 Consensus size: 97
71278213 GGGATAAGAT
*
71278223 GCCGATGCCATGTCCCAGACATAGTCTTACTCTGGCTAAAACATCAAAGTCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATAGTCTTACTCTCGCTAAAACATCAAAGTCGATGCCATGTCCCA
71278288 GACAGGTCTTACACTAACTTCCATATATCGAG
66 GACAGGTCTTACACTAACTTCCATATATCGAG
* * * * * ** *
71278320 GCCGATGCCATGTCCCAGACAT-GTCTTACAGTGTCTCTCATATATCAGTGTCGATGCTATGTCC
1 GCCGATGCCATGTCCCAGACATAGTCTTAC--TCTCGCTAAAACATCAAAGTCGATGCCATGTCC
*
71278384 CAGTCAGGTCTTACACTAAC
64 CAGACAGGTCTTACACTAAC
71278404 ACACAATAAG
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
96 7 0.10
97 22 0.31
98 43 0.60
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (97 bp):
GCCGATGCCATGTCCCAGACATAGTCTTACTCTCGCTAAAACATCAAAGTCGATGCCATGTCCCA
GACAGGTCTTACACTAACTTCCATATATCGAG
Found at i:71278527 original size:46 final size:47
Alignment explanation
Indices: 71278223--71278636 Score: 233
Period size: 48 Copynumber: 8.7 Consensus size: 47
71278213 GGGATAAGAT
* * * * *
71278223 GCCGATGCCATGTCCCAGACATAGTCTTACTCTGGC-T-AAAACATCAAA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTCTAATC-TCAAG
* * * * * *
71278271 GTCGATGCCATGTCCCAGACAGGTCTTACACTAACTTCCATATATCGAG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTTCTA-ATCTCAAG
* *
71278320 GCCGATGCCATGTCCCAGACATGTCTTACAGT-G-TCTCTCATATATC-AG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCT-TCT-A-ATCTCAAG
* * * * * *
71278368 TGTCGATGCTATGTCCCAGTCAGGTCTTACACTAAC-AC-ACA-AT-AA-
1 -GCCGATGC-ATGTCCCAGACATGTCTTACACTAGCTTCTA-ATCTCAAG
* * * * *
71278413 GCTGACGCCATGTCCCAGACAGGTCTTACACTAGCTTGTAATCTCGAG
1 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTTCTAATCTCAAG
* ** *
71278461 GCTGATGCATGTCCCAGACATGTCTTACACTAGC-TCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTCTAATCTCAAG
* * * **
71278507 TCCGATGCATGTCCCAGACATGTCTTACACT-GGTTGGTATATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTT-CTA-ATCTCAAG
* * * **
71278555 GCCGATGCATGTCCTAGACATGTCTTACACT-GGTTGGTATATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTT-CTA-ATCTCAAG
*
71278603 GCCGATGCATGTCCCAGACATGTCCTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
71278637 ACACATATCA
Statistics
Matches: 294, Mismatches: 52, Indels: 39
0.76 0.14 0.10
Matches are distributed among these distances:
44 28 0.10
45 3 0.01
46 42 0.14
47 41 0.14
48 111 0.38
49 68 0.23
50 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTCTAATCTCAAG
Found at i:71278645 original size:48 final size:48
Alignment explanation
Indices: 71278273--71278636 Score: 266
Period size: 48 Copynumber: 7.7 Consensus size: 48
71278263 ACATCAAAGT
* * * *
71278273 CGATGCCATGTCCCAGACAGGTCTTACACTAACTTC-CATATATCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGC-TCGTATATCTCGAGGC
* * *
71278322 CGATGCCATGTCCCAGACATGTCTTACAGT-GTCTC-TCATATATC-AGTGT
1 CGATG-CATGTCCCAGACATGTCTTACACTAG-CTCGT-ATATCTCGAG-GC
* * * * * * *
71278371 CGATGCTATGTCCCAGTCAGGTCTTACACTAACAC--ACA-AT--AAGC
1 CGATGC-ATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCGAGGC
* * * *
71278415 TGACGCCATGTCCCAGACAGGTCTTACACTAGCTTGTA-ATCTCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCGAGGC
* ** * **
71278463 TGATGCATGTCCCAGACATGTCTTACACTAGCTC-T-CGTCTCAATTC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCGAGGC
* * * *
71278509 CGATGCATGTCCCAGACATGTCTTACACTGGTTGGTATATCTTGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCGAGGC
* * * * *
71278557 CGATGCATGTCCTAGACATGTCTTACACTGGTTGGTATATCTTGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCGAGGC
*
71278605 CGATGCATGTCCCAGACATGTCCTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
71278637 ACACATATCA
Statistics
Matches: 258, Mismatches: 43, Indels: 29
0.78 0.13 0.09
Matches are distributed among these distances:
44 28 0.11
45 3 0.01
46 41 0.16
47 30 0.12
48 92 0.36
49 64 0.25
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCGAGGC
Found at i:71285166 original size:48 final size:48
Alignment explanation
Indices: 71285103--71285383 Score: 400
Period size: 48 Copynumber: 5.9 Consensus size: 48
71285093 ACATGAATCT
71285103 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCAC
** * * * *
71285151 ACATATCATTACCGATGCCATGCCCCAAACATGGTCTTACACTGGCCC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCAC
* * *
71285199 ACATATCATCGCCGATGCCATGTCCCAGAAATGGTCTTACACTGGTAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCAC
* * * *
71285247 ACATATCATCCCCGATACCATGTCCTAGACATGGTCTTACATAGGCAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCAC
* * *
71285295 ACATATCATCCCCGATGCCATGTCCCAAACATGGTCTTACATAGGCAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCAC
* *
71285343 ATATATCATCGTCGATGCCATGTCCCAGACATGGTCTTACA
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACA
71285384 CAGGCACATT
Statistics
Matches: 206, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 206 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (48 bp):
ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCAC
Found at i:71285351 original size:144 final size:144
Alignment explanation
Indices: 71285103--71285384 Score: 449
Period size: 144 Copynumber: 2.0 Consensus size: 144
71285093 ACATGAATCT
* * * *
71285103 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCACACATATCATTACCGATG
1 ACATATCATCCCCGATACCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCACCGATG
*
71285168 CCATGCCCCAAACATGGTCTTACACTGGCCCACATATCATCGCCGATGCCATGTCCCAGAAATGG
66 CCATGCCCCAAACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAGAAATGG
71285233 TCTTACACTGGTAC
131 TCTTACACTGGTAC
* *
71285247 ACATATCATCCCCGATACCATGTCCTAGACATGGTCTTACATAGGCACACATATCATCCCCGATG
1 ACATATCATCCCCGATACCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCACCGATG
* * * *
71285312 CCATGTCCCAAACATGGTCTTACA-TAGGCACATATATCATCGTCGATGCCATGTCCCAGACATG
66 CCATGCCCCAAACATGGTCTTACACT-GGCACACATATCATCGCCGATGCCATGTCCCAGAAATG
71285376 GTCTTACAC
130 GTCTTACAC
71285385 AGGCACATTT
Statistics
Matches: 126, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
143 1 0.01
144 125 0.99
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (144 bp):
ACATATCATCCCCGATACCATGTCCCAGACATGGTCTTACATAGGCACACATATCATCACCGATG
CCATGCCCCAAACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAGAAATGG
TCTTACACTGGTAC
Found at i:71286373 original size:18 final size:20
Alignment explanation
Indices: 71286337--71286383 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
71286327 AGTTGTAAGT
71286337 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
71286357 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
71286376 ATGATATA
1 AT-ATATA
71286384 ACCTATTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:71286995 original size:101 final size:101
Alignment explanation
Indices: 71286890--71287073 Score: 332
Period size: 101 Copynumber: 1.8 Consensus size: 101
71286880 TAAGTCATGC
71286890 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTG
*
71286955 CAGGCTACTATGCGTACCTGTTAACTTTGATCACAT
66 CAGGCTACTATGCATACCTGTTAACTTTGATCACAT
* * *
71286991 GTGTAGTACTAAGTGTAGGCTATTACGTGTACCAGATTGATAGGTCACATGTGTTGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTG
71287056 CAGGCTACTATGCATACC
66 CAGGCTACTATGCATACC
71287074 AGAGAGCTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 79 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (101 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTG
CAGGCTACTATGCATACCTGTTAACTTTGATCACAT
Found at i:71287076 original size:50 final size:50
Alignment explanation
Indices: 71286732--71287065 Score: 348
Period size: 50 Copynumber: 6.6 Consensus size: 50
71286722 ATCGTTGTGA
*
71286732 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * *
71286782 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * ** * * * * *
71286833 ATCACGTATGAAGTACTAAGTTTAGGCTACAACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
***
71286883 GTCATGCGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * *
71286933 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTG-TTAACTTTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * *
71286984 ATCACATGTGTAGTACTAAGTGTAGGCTATTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
*
71287034 GTCACATGTGTTGTACTAAGTGCAGGCTACTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTA
71287066 TGCATACCAG
Statistics
Matches: 222, Mismatches: 56, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
49 6 0.03
50 142 0.64
51 70 0.32
52 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:71287076 original size:151 final size:151
Alignment explanation
Indices: 71286731--71287065 Score: 526
Period size: 151 Copynumber: 2.2 Consensus size: 151
71286721 AATCGTTGTG
*
71286731 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
* *
71286796 ACTAAGTGCAGGCTACTATGCGTACCTGTTAACTTCGATCACGTATGAAGTACTAAGTTTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCTGTTAACTTCGATCACATATGAAGTACTAAGTGTAGGCT
* *
71286861 ACAACGTGTATCAGATGGTTA
131 ACAACGTGTACCAGATGGATA
* *
71286882 AGTCATGCGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
* * *
71286947 ACTAAGTGCAGGCTACTATGCGTACCTGTTAACTTTGATCACATGTGTAGTACTAAGTGTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCTGTTAACTTCGATCACATATGAAGTACTAAGTGTAGGCT
** *
71287012 ATTACGTGTACCAGATTGATA
131 ACAACGTGTACCAGATGGATA
* * *
71287033 GGTCACATGTGTTGTACTAAGTGCAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
71287066 TGCATACCAG
Statistics
Matches: 166, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
151 166 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCTGTTAACTTCGATCACATATGAAGTACTAAGTGTAGGCT
ACAACGTGTACCAGATGGATA
Found at i:71289742 original size:28 final size:28
Alignment explanation
Indices: 71289673--71289773 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
71289663 GACAAGATTG
* * * *
71289673 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
71289703 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71289731 GCACTAAGTGTGCGAG-CTGAATATATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
71289760 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71289774 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71289767 original size:29 final size:28
Alignment explanation
Indices: 71289702--71289773 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
71289692 AAAATTGTAC
*
71289702 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
71289730 AGCACTAAGTGTGCGAG-CTGAATATATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
71289759 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
71289774 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:71296194 original size:24 final size:24
Alignment explanation
Indices: 71296122--71296458 Score: 494
Period size: 24 Copynumber: 14.1 Consensus size: 24
71296112 GAATGTGACT
* *
71296122 ATAGCAAATCGCAC-CATA-TGCT
1 ATAGTAAATCGCACACATAGTGCC
*
71296144 ATAGCAAATCGC-CACATAGTG-C
1 ATAGTAAATCGCACACATAGTGCC
71296166 --A-TAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71296187 ATAGTAAATCG--CACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71296209 ATAGTGCACATAAAGTCGCACACATAGTGCC
1 ATA--G----TAAA-TCGCACACATAGTGCC
71296240 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
71296264 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71296288 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71296312 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
71296336 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71296360 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
71296384 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71296408 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71296432 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
71296456 ATA
1 ATA
71296459 TGGTCTTTGC
Statistics
Matches: 291, Mismatches: 8, Indels: 30
0.88 0.02 0.09
Matches are distributed among these distances:
19 7 0.02
20 10 0.03
21 2 0.01
22 30 0.10
23 3 0.01
24 213 0.73
25 4 0.01
28 4 0.01
29 4 0.01
31 14 0.05
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:71299390 original size:46 final size:46
Alignment explanation
Indices: 71299340--71299515 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
71299330 TGGTTGAGCA
71299340 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71299386 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71299431 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71299479 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71299516 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71299496 original size:93 final size:93
Alignment explanation
Indices: 71299337--71299508 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71299327 GGATGGTTGA
* *
71299337 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71299402 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71299430 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71299495 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
71299509 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71306964 original size:46 final size:46
Alignment explanation
Indices: 71306914--71307089 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
71306904 TGGTTGAGCA
71306914 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71306960 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71307005 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71307053 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71307090 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71307070 original size:93 final size:93
Alignment explanation
Indices: 71306911--71307082 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71306901 GGATGGTTGA
* *
71306911 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71306976 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71307004 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71307069 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
71307083 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71310283 original size:40 final size:39
Alignment explanation
Indices: 71310115--71310285 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
71310105 AGAAATTGAA
* *
71310115 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
71310155 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
71310195 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
71310235 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
71310275 TGATATCCGGG
1 TGATATCCGGG
71310286 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:71312705 original size:40 final size:40
Alignment explanation
Indices: 71312474--71312698 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
71312464 TCGAATGATG
* * *
71312474 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
71312514 TCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71312554 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
71312593 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
71312633 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
71312674 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
71312699 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 34 0.21
40 117 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:71312721 original size:119 final size:119
Alignment explanation
Indices: 71312481--71312705 Score: 278
Period size: 119 Copynumber: 1.9 Consensus size: 119
71312471 ATGTCCGGGC
* *
71312481 TAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGAACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGAACTAAGATCCGAAGGCATTTGTGCGAG
* * ** *
71312546 TTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGT
66 TTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGAGT
* *
71312600 TAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAATCCGGGA-TAAG-TCCCGAAGGCATTTGTGC
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTCACTAAATCC-GAACTAAGAT-CCGAAGGCATTTGTGC
* *
71312662 GAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
63 GAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGT
71312706 AGCTATATCT
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 3 0.03
119 61 0.67
120 27 0.30
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTCACTAAATCCGAACTAAGATCCGAAGGCATTTGTGCGAG
TTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATCCGAGT
Found at i:71314136 original size:31 final size:31
Alignment explanation
Indices: 71314101--71314164 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
71314091 CATTTACAGT
*
71314101 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
71314132 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
71314163 AA
1 AA
71314165 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:71321729 original size:25 final size:25
Alignment explanation
Indices: 71321699--71321748 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
71321689 CCTTATAATA
* * *
71321699 TAAAAATGACCGTTTTGCCCCTAGG
1 TAAAAATGACCATTATACCCCTAGG
71321724 TAAAAATGACCATTATACCCCTAGG
1 TAAAAATGACCATTATACCCCTAGG
71321749 GTTTATGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (25 bp):
TAAAAATGACCATTATACCCCTAGG
Found at i:71321814 original size:20 final size:20
Alignment explanation
Indices: 71321791--71321846 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
71321781 TAAACATGGT
71321791 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
71321811 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
71321831 ATGTATGATATGCACA
1 ATGTATGATATGCACA
71321847 AGATGTATTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:71321971 original size:46 final size:47
Alignment explanation
Indices: 71321904--71321996 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
71321894 AAGTGCAAAT
*
71321904 GGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTAAA
1 GGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTACTAAA
*
71321950 GGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTACTAAA
1 GGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTACTAAA
71321997 AGAGGCTAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 20 0.45
47 24 0.55
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (47 bp):
GGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTACTAAA
Found at i:71321979 original size:24 final size:23
Alignment explanation
Indices: 71321904--71321996 Score: 159
Period size: 23 Copynumber: 4.0 Consensus size: 23
71321894 AAGTGCAAAT
71321904 GGGCTTATGCCCCAGTTATTAAA
1 GGGCTTATGCCCCAGTTATTAAA
71321927 GGGCTTATGCCCCAGTTATTAAA
1 GGGCTTATGCCCCAGTTATTAAA
71321950 GGGCTTATGCCCCAGTTATTAAAA
1 GGGCTTATGCCCCAGTTATT-AAA
* *
71321974 GGGCTTTTGCCCCAGTTACTAAA
1 GGGCTTATGCCCCAGTTATTAAA
71321997 AGAGGCTAGG
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
23 46 0.69
24 21 0.31
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (23 bp):
GGGCTTATGCCCCAGTTATTAAA
Found at i:71321997 original size:24 final size:23
Alignment explanation
Indices: 71321904--71322018 Score: 151
Period size: 23 Copynumber: 4.9 Consensus size: 23
71321894 AAGTGCAAAT
*
71321904 GGGCTTATGCCCCAGTTATTAAA
1 GGGCTTATGCCCCAGTTATAAAA
*
71321927 GGGCTTATGCCCCAGTTATTAAA
1 GGGCTTATGCCCCAGTTATAAAA
71321950 GGGCTTATGCCCCAGTTATTAAAA
1 GGGCTTATGCCCCAGTTA-TAAAA
*
71321974 GGGCTTTTGCCCCAGTTACTAAAA
1 GGGCTTATGCCCCAGTTA-TAAAA
*
71321998 GAGGC-TAGGCCTCCAGTTATA
1 G-GGCTTATGCC-CCAGTTATA
71322019 TGATAAAGCA
Statistics
Matches: 84, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
23 41 0.49
24 33 0.39
25 10 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (23 bp):
GGGCTTATGCCCCAGTTATAAAA
Found at i:71322246 original size:31 final size:31
Alignment explanation
Indices: 71322211--71322274 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
71322201 CGTTTACAGT
*
71322211 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
71322242 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
71322273 AA
1 AA
71322275 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:71326954 original size:35 final size:35
Alignment explanation
Indices: 71326842--71326980 Score: 122
Period size: 35 Copynumber: 4.0 Consensus size: 35
71326832 CATAAGTAAG
* *
71326842 TACATGT-AAGCTTATATTGAACTTGTATATTCGGC
1 TACATGTGAA-CTTATATTGAAATTGTATATTCGGA
* ** *
71326877 TGCATGTGAGGTTATATTG-AATTTTAGTATTC-GA
1 TACATGTGAACTTATATTGAAATTGTA-TATTCGGA
71326911 TTACATGTGAACTTATATTGAAATTGTATATTCGGA
1 -TACATGTGAACTTATATTGAAATTGTATATTCGGA
* * * * * *
71326947 TATATGTGAAGTTATCTTAAAAATGCATATTCGG
1 TACATGTGAACTTATATTGAAATTGTATATTCGG
71326981 CCATATGTGA
Statistics
Matches: 83, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
34 6 0.07
35 68 0.82
36 9 0.11
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (35 bp):
TACATGTGAACTTATATTGAAATTGTATATTCGGA
Found at i:71326978 original size:70 final size:70
Alignment explanation
Indices: 71326842--71326979 Score: 154
Period size: 70 Copynumber: 2.0 Consensus size: 70
71326832 CATAAGTAAG
* * * * * * **
71326842 TACATGTAAGCTTATATTGAACTTGTATATTCGGCTGCATGTGAGGTTATATTGAATTTTAGTAT
1 TACATGTAAGCTTATATTGAAATTGTATATTCGGATACATGTGAAGTTATATTAAAATGCAGTAT
71326907 TCGAT
66 TCGAT
* *
71326912 TACATGTGAA-CTTATATTGAAATTGTATATTCGGATATATGTGAAGTTATCTTAAAAATGCA-T
1 TACATGT-AAGCTTATATTGAAATTGTATATTCGGATACATGTGAAGTTATATT-AAAATGCAGT
71326975 ATTCG
64 ATTCG
71326980 GCCATATGTG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
70 50 0.89
71 6 0.11
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (70 bp):
TACATGTAAGCTTATATTGAAATTGTATATTCGGATACATGTGAAGTTATATTAAAATGCAGTAT
TCGAT
Found at i:71326987 original size:35 final size:35
Alignment explanation
Indices: 71326915--71326990 Score: 89
Period size: 35 Copynumber: 2.2 Consensus size: 35
71326905 ATTCGATTAC
* * * *
71326915 ATGTGAACTTATATTGAAATTGTATATTCGGATAT
1 ATGTGAACTTATATTAAAAATGCATATTCGGACAT
* * *
71326950 ATGTGAAGTTATCTTAAAAATGCATATTCGGCCAT
1 ATGTGAACTTATATTAAAAATGCATATTCGGACAT
71326985 ATGTGA
1 ATGTGA
71326991 TGTTCTTTTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.38
Consensus pattern (35 bp):
ATGTGAACTTATATTAAAAATGCATATTCGGACAT
Found at i:71333503 original size:255 final size:253
Alignment explanation
Indices: 71333045--71333555 Score: 844
Period size: 255 Copynumber: 2.0 Consensus size: 253
71333035 ATCTGAGTCT
71333045 ATAAGTGAAGAGGAGATTGAATTTTAGGAGGGAGACATCATGAGAACTATGGTAATGGATACCAA
1 ATAAGTGAAGAGGAGATTGAATTTTAGGAGGGAGACATCATGAGAACTATGGTAATGGATACCAA
*
71333110 CAATTAATTTTTCTGATCGGAAAAGCAAATCATGATAATGGATATGGAAACCACGATGGTGGTGA
66 CAATTAATTTTTCTGATCGGAAAAGCAAATCATGATAATGGATATAGAAACCACGATGGTGGTGA
* * *
71333175 AATTAATGGGAAGGAATTTGGCATATTCTACTCACCATAATAGGATCTTTAGTCTTTGGAAACCA
131 AATTAATGGGAAGGAATTTGGCATATTCTACTCACCATAATAGGAACTTTAGTATCTGGAAACCA
* * * *
71333240 GTACATTTGTTTCAGCTCATGGATGTTGAAAGCAGCTACTTTCTAGTGAAATTTCAGA
196 GCACATTTGTTTCAACTCATGGATGTTGAAAACAACTACTTTCTAGTGAAATTTCAGA
*
71333298 ATAAGTGAAGAGGAGATTGAATTTTAGGAGGGAGTCATCATGAGAACTATGGTTAATGGATACCA
1 ATAAGTGAAGAGGAGATTGAATTTTAGGAGGGAGACATCATGAGAACTATGG-TAATGGATACCA
* * *
71333363 ACAATTAATTTTTCTGATTGGATAAAGCAAATCATGATAATGGATTTAGAAACCACGGTGGTGGT
65 ACAATTAATTTTTCTGATCGGA-AAAGCAAATCATGATAATGGATATAGAAACCACGATGGTGGT
* *
71333428 GAAATTAGTGGGAATGAATTTGGCATATTCTACTCACCATAATAGGAACTTTAGTATCTGGAAAC
129 GAAATTAATGGGAAGGAATTTGGCATATTCTACTCACCATAATAGGAACTTTAGTATCTGGAAAC
* *
71333493 TTA-CACATTTGTTTCAACTCATGGATGTTGAAAACAACTACTTTCTAGTGAAGTTTCAGA
194 -CAGCACATTTGTTTCAACTCATGGATGTTGAAAACAACTACTTTCTAGTGAAATTTCAGA
71333553 ATA
1 ATA
71333556 GGGAGAACTA
Statistics
Matches: 239, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
253 51 0.21
254 33 0.14
255 154 0.64
256 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (253 bp):
ATAAGTGAAGAGGAGATTGAATTTTAGGAGGGAGACATCATGAGAACTATGGTAATGGATACCAA
CAATTAATTTTTCTGATCGGAAAAGCAAATCATGATAATGGATATAGAAACCACGATGGTGGTGA
AATTAATGGGAAGGAATTTGGCATATTCTACTCACCATAATAGGAACTTTAGTATCTGGAAACCA
GCACATTTGTTTCAACTCATGGATGTTGAAAACAACTACTTTCTAGTGAAATTTCAGA
Found at i:71336504 original size:20 final size:20
Alignment explanation
Indices: 71336479--71336520 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
71336469 TTAGAGAAGT
71336479 GTTATACCGTTACTCCTAGC
1 GTTATACCGTTACTCCTAGC
71336499 GTTATACCGTTACTCCTAGC
1 GTTATACCGTTACTCCTAGC
71336519 GT
1 GT
71336521 GGCAATTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.36
Consensus pattern (20 bp):
GTTATACCGTTACTCCTAGC
Found at i:71341618 original size:99 final size:99
Alignment explanation
Indices: 71341444--71341632 Score: 342
Period size: 99 Copynumber: 1.9 Consensus size: 99
71341434 CATGCCAAAC
* *
71341444 TTATCAACTAATCATCAAACACAAGTCCACCTACACATGCCATTATAACCTCGGCCAAAATATCA
1 TTATCAACTAATCATCAAACACAAGTCCACCTACACATGCCATTATAACATCGGCCAAAACATCA
71341509 AAAACCATTGATATAATCATTAGATAGTGTGAAT
66 AAAACCATTGATATAATCATTAGATAGTGTGAAT
*
71341543 TTATCAACTAATCATCAAACACAAGTCCACCTATACATGCCATTATAACATCGGCCAAAACATCA
1 TTATCAACTAATCATCAAACACAAGTCCACCTACACATGCCATTATAACATCGGCCAAAACATCA
*
71341608 AAAACTATTGATATAATCATTAGAT
66 AAAACCATTGATATAATCATTAGAT
71341633 CTTCAATGAA
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 86 1.00
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.26
Consensus pattern (99 bp):
TTATCAACTAATCATCAAACACAAGTCCACCTACACATGCCATTATAACATCGGCCAAAACATCA
AAAACCATTGATATAATCATTAGATAGTGTGAAT
Found at i:71349150 original size:132 final size:132
Alignment explanation
Indices: 71348965--71349230 Score: 532
Period size: 132 Copynumber: 2.0 Consensus size: 132
71348955 CCACAGCATG
71348965 TAGTTTCATCATAAATTTGAGTTATACAAACAATTCACAAACTTCAGAATTTATTCATCTATTTA
1 TAGTTTCATCATAAATTTGAGTTATACAAACAATTCACAAACTTCAGAATTTATTCATCTATTTA
71349030 GACTTATTTAATTATATAAACACAAAAACTATATATCTAAGTTCCAGAAATACATTCAATGTTCT
66 GACTTATTTAATTATATAAACACAAAAACTATATATCTAAGTTCCAGAAATACATTCAATGTTCT
71349095 AA
131 AA
71349097 TAGTTTCATCATAAATTTGAGTTATACAAACAATTCACAAACTTCAGAATTTATTCATCTATTTA
1 TAGTTTCATCATAAATTTGAGTTATACAAACAATTCACAAACTTCAGAATTTATTCATCTATTTA
71349162 GACTTATTTAATTATATAAACACAAAAACTATATATCTAAGTTCCAGAAATACATTCAATGTTCT
66 GACTTATTTAATTATATAAACACAAAAACTATATATCTAAGTTCCAGAAATACATTCAATGTTCT
71349227 AA
131 AA
71349229 TA
1 TA
71349231 AATTGTATTT
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
132 134 1.00
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.37
Consensus pattern (132 bp):
TAGTTTCATCATAAATTTGAGTTATACAAACAATTCACAAACTTCAGAATTTATTCATCTATTTA
GACTTATTTAATTATATAAACACAAAAACTATATATCTAAGTTCCAGAAATACATTCAATGTTCT
AA
Found at i:71352192 original size:16 final size:16
Alignment explanation
Indices: 71352171--71352225 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
71352161 GTTTGGTTCA
71352171 CTGTAATGGAATA-AGG
1 CTGTAATGGAATAGA-G
*
71352187 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
71352203 TTGTAATGAAATAGAG
1 CTGTAATGGAATAGAG
71352219 CTGTAAT
1 CTGTAAT
71352226 CAGTAGTTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
16 32 0.97
17 1 0.03
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:71352533 original size:35 final size:37
Alignment explanation
Indices: 71352459--71352534 Score: 86
Period size: 38 Copynumber: 2.1 Consensus size: 37
71352449 ATATTTTAAC
* **
71352459 ATAATTATTATTAAATATAATTTAATAACATTCTTAAT
1 ATAATTATTATT-AATATAATTTAATAACAATCAAAAT
71352497 ATAATTATTATT-ATATGAATTTAA-AA-AATCAAAAT
1 ATAATTATTATTAATAT-AATTTAATAACAATCAAAAT
71352532 ATA
1 ATA
71352535 TACTACTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
35 9 0.26
36 6 0.18
37 7 0.21
38 12 0.35
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (37 bp):
ATAATTATTATTAATATAATTTAATAACAATCAAAAT
Found at i:71352955 original size:43 final size:43
Alignment explanation
Indices: 71352894--71352979 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
71352884 TACAAATACA
*
71352894 TAAGGCAACCAATTTGATGTATTTTCCAACTTGATACCTAACC
1 TAAGGCAACCAATTTGATGTATTTTCCAACTTGATACCCAACC
* *
71352937 TAAGGCAACCAATTTGATGTCTTTTCTAACTTGATACCCAACC
1 TAAGGCAACCAATTTGATGTATTTTCCAACTTGATACCCAACC
71352980 AATTCCTGAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (43 bp):
TAAGGCAACCAATTTGATGTATTTTCCAACTTGATACCCAACC
Found at i:71354622 original size:16 final size:16
Alignment explanation
Indices: 71354601--71354633 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
71354591 AAACTGAGGA
71354601 TGGAATCCCAAATTAG
1 TGGAATCCCAAATTAG
71354617 TGGAATCCCAAATTAG
1 TGGAATCCCAAATTAG
71354633 T
1 T
71354634 AATTGTAGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (16 bp):
TGGAATCCCAAATTAG
Found at i:71355677 original size:19 final size:19
Alignment explanation
Indices: 71355653--71355690 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
71355643 AAGTGTTAAC
71355653 ATGCATAAGGTCCATTTAG
1 ATGCATAAGGTCCATTTAG
71355672 ATGCATAAGGTCCATTTAG
1 ATGCATAAGGTCCATTTAG
71355691 CAAAATTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (19 bp):
ATGCATAAGGTCCATTTAG
Found at i:71359529 original size:29 final size:29
Alignment explanation
Indices: 71359458--71359529 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
71359448 TCTGTACGAT
* * *
71359458 GATCTCTATTAAAATGGAAGTCTTTGTGGC
1 GATCTCTAAT-AAATGGAAGCCTTGGTGGC
*
71359488 GACCT-TAATTAAATGGAAGCCTTGGTGGC
1 GATCTCTAA-TAAATGGAAGCCTTGGTGGC
71359517 GATCTCTAATAAA
1 GATCTCTAATAAA
71359530 AAGAATGCCT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 27 0.77
30 8 0.23
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (29 bp):
GATCTCTAATAAATGGAAGCCTTGGTGGC
Found at i:71379127 original size:20 final size:20
Alignment explanation
Indices: 71379099--71379139 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
71379089 AATTTACTCT
*
71379099 AAAATAGGGAAATAAAACTA
1 AAAACAGGGAAATAAAACTA
*
71379119 AAAACAGGGAGATAAAACTA
1 AAAACAGGGAAATAAAACTA
71379139 A
1 A
71379140 GTAAGCATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.63, C:0.07, G:0.17, T:0.12
Consensus pattern (20 bp):
AAAACAGGGAAATAAAACTA
Found at i:71382187 original size:25 final size:27
Alignment explanation
Indices: 71382150--71382202 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
71382140 TCAAACATGC
71382150 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
71382176 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
71382202 A
1 A
71382203 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:71383719 original size:26 final size:26
Alignment explanation
Indices: 71383689--71383770 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
71383679 TGAAATTCCC
71383689 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
71383715 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71383741 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
71383767 ATCA
1 ATCA
71383771 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:71384890 original size:18 final size:17
Alignment explanation
Indices: 71384860--71384898 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
71384850 GCAACCTAAT
*
71384860 TTTATTTTATTTATATC
1 TTTATTTTATTTATATA
71384877 TTTATTTATATTTATATA
1 TTTATTT-TATTTATATA
71384895 TTTA
1 TTTA
71384899 CATATTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTATTTTATTTATATA
Found at i:71384922 original size:26 final size:25
Alignment explanation
Indices: 71384866--71384938 Score: 62
Period size: 26 Copynumber: 3.0 Consensus size: 25
71384856 TAATTTTATT
* *
71384866 TTATTTATATCTTTATTTATATTTA
1 TTATTTACATATTTATTTATATTTA
* *
71384891 TATATTTACATATTTATTTCTTATTTC
1 T-TATTTACATATTTATTT-ATATTTA
*
71384918 TTATTT-C-TTTTTATTT-TATTT
1 TTATTTACATATTTATTTATATTT
71384939 TATTGCATGT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
22 5 0.12
24 8 0.20
25 2 0.05
26 20 0.49
27 6 0.15
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (25 bp):
TTATTTACATATTTATTTATATTTA
Found at i:71392103 original size:47 final size:47
Alignment explanation
Indices: 71392051--71392486 Score: 685
Period size: 47 Copynumber: 9.3 Consensus size: 47
71392041 ACAAGATATG
*
71392051 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
71392098 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
71392145 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
71392192 TATATGTGATAGGGCC-AAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAA-TGGCCAATGTGATGAATGTGAAAGTGTA
* *
71392239 TATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
71392286 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
71392333 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* **
71392380 TATATGTGATAGGGCCGAGCGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
71392427 TATATGTGATAAGGCCAAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
71392474 TAAATGTGATAAG
1 TATATGTGATAAG
71392487 TCCTGAAGGG
Statistics
Matches: 354, Mismatches: 33, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
46 2 0.01
47 350 0.99
48 2 0.01
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:71392162 original size:94 final size:94
Alignment explanation
Indices: 71392051--71392484 Score: 796
Period size: 94 Copynumber: 4.6 Consensus size: 94
71392041 ACAAGATATG
71392051 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCGA
71392116 GTGGCCAACGTGATGAATGTGAAAGTGTA
66 GTGGCCAACGTGATGAATGTGAAAGTGTA
*
71392145 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCAA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCGA
71392210 GTGGCCAACGTGATGAATGTGAAAGTGTA
66 GTGGCCAACGTGATGAATGTGAAAGTGTA
*
71392239 TATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCGA
71392304 GTGGCCAACGTGATGAATGTGAAAGTGTA
66 GTGGCCAACGTGATGAATGTGAAAGTGTA
71392333 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCGA
* *
71392398 GCGGCCAATGTGATGAATGTGAAAGTGTA
66 GTGGCCAACGTGATGAATGTGAAAGTGTA
* * * *
71392427 TATATGTGATAAGGCCAAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATA
71392485 AGTCCTGAAG
Statistics
Matches: 330, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 330 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (94 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCGA
GTGGCCAACGTGATGAATGTGAAAGTGTA
Found at i:71392341 original size:25 final size:25
Alignment explanation
Indices: 71392313--71392389 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
71392303 AGTGGCCAAC
71392313 GTGATGAATGTGAAAGTGTATATAT
1 GTGATGAATGTGAAAGTGTATATAT
* * ***
71392338 GTGAT-AAGGCCG-AA-TGGCCA-AT
1 GTGATGAATG-TGAAAGTGTATATAT
*
71392360 GTGATGAATGTGAAAGTATATATAT
1 GTGATGAATGTGAAAGTGTATATAT
71392385 GTGAT
1 GTGAT
71392390 AGGGCCGAGC
Statistics
Matches: 36, Mismatches: 11, Indels: 10
0.63 0.19 0.18
Matches are distributed among these distances:
22 8 0.22
23 8 0.22
24 7 0.19
25 13 0.36
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (25 bp):
GTGATGAATGTGAAAGTGTATATAT
Found at i:71397152 original size:43 final size:43
Alignment explanation
Indices: 71397076--71397566 Score: 498
Period size: 43 Copynumber: 11.0 Consensus size: 43
71397066 ATATCGTACA
* * * * *
71397076 ATGCCAAGGTCCCAAACATAGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * ** ** *
71397119 ATACCACTGTCTTAGACAAGGTCTTACACGTAATCGCATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
71397162 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCA-ATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
71397204 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
71397247 ATGCCAATGTCTCAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
71397290 ATGCCAATGTCCCAAACGTGCTCTTACCTCAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTA---C--AC---G---TA-AT-----CACATATCG
* * * *
71397350 ATGCCAATGTCCCAAACGTGCTTTTACACATAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
71397393 ATGTCAATGTCCCAGGCATGGTCTTACACGTATTCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
** *
71397436 ATGCCAACATCCCAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
71397479 ATGTCAACGTCCCAGATGTGGTATTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
71397522 ATCCCAACGTCTCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
71397565 AT
1 AT
71397567 AATCCTATGT
Statistics
Matches: 380, Mismatches: 50, Indels: 36
0.82 0.11 0.08
Matches are distributed among these distances:
42 41 0.11
43 291 0.77
46 1 0.00
48 3 0.01
49 2 0.01
51 1 0.00
54 2 0.01
55 4 0.01
57 1 0.00
60 34 0.09
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:71397350 original size:60 final size:60
Alignment explanation
Indices: 71397257--71397376 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 60
71397247 ATGCCAATGT
71397257 CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
1 CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
*
71397317 CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTTTTAC
1 CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
71397377 ACATAATCAC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (60 bp):
CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
Found at i:71397401 original size:103 final size:103
Alignment explanation
Indices: 71397219--71397406 Score: 313
Period size: 103 Copynumber: 1.8 Consensus size: 103
71397209 AATGTCCCAG
* * **
71397219 ACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCTCAAACGTGGTCTTACATGTAATCAC
1 ACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTACACATAATCAC
71397284 ATATCGATGCCAATGTCCCAAACGTGCTCTTACCTCAA
66 ATATCGATGCCAATGTCCCAAACGTGCTCTTACCTCAA
* *
71397322 ACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTTTTACACATAATCAC
1 ACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTACACATAATCAC
*
71397387 ATATCGATGTCAATGTCCCA
66 ATATCGATGCCAATGTCCCA
71397407 GGCATGGTCT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 78 1.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.29
Consensus pattern (103 bp):
ACGTGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTACACATAATCAC
ATATCGATGCCAATGTCCCAAACGTGCTCTTACCTCAA
Done.