Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 238 of 335
Found at i:72104173 original size:32 final size:32
Alignment explanation
Indices: 72104137--72104201 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
72104127 TATTTATGAG
72104137 ATCATTAGTGTCGTATTAAAAATTGGTTAATA
1 ATCATTAGTGTCGTATTAAAAATTGGTTAATA
72104169 ATCATTAGTGTCGTATTAAAAATTGGTTAATA
1 ATCATTAGTGTCGTATTAAAAATTGGTTAATA
72104201 A
1 A
72104202 GTTGTAATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.40
Consensus pattern (32 bp):
ATCATTAGTGTCGTATTAAAAATTGGTTAATA
Found at i:72106200 original size:43 final size:42
Alignment explanation
Indices: 72106142--72106289 Score: 124
Period size: 43 Copynumber: 3.5 Consensus size: 42
72106132 CAATGCCGAC
*
72106142 GTCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACATG-AATTCAATATCGATGCCTAT
* * * *
72106185 GTCCCAGACAGGGTCTTACACGAAATCAGATA-CGATGTCGAT
1 GTCCCAGACAGGGTCTTACATGAATTCA-ATATCGATGCCTAT
* * * *
72106227 GTCCCAGACATGGTCGTATACATAAATCTCAAT-T-GAGGCCTGT
1 GTCCCAGACAGGGTC-T-TACATGAAT-TCAATATCGATGCCTAT
*
72106270 GTCCCAGACACGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
72106290 CGATGTCTCA
Statistics
Matches: 85, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
41 4 0.05
42 27 0.32
43 42 0.49
44 9 0.11
45 3 0.04
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACATGAATTCAATATCGATGCCTAT
Found at i:72109092 original size:22 final size:22
Alignment explanation
Indices: 72109062--72109139 Score: 124
Period size: 22 Copynumber: 3.6 Consensus size: 22
72109052 CCGTGTGGTC
*
72109062 ACACGCGCCCGTGTGGCTTGGG
1 ACACACGCCCGTGTGGCTTGGG
72109084 ACACACGCCCGTGTGGCTTGGG
1 ACACACGCCCGTGTGGCTTGGG
*
72109106 ACACGCGCCCGTGTGGCTTGGG
1 ACACACGCCCGTGTGGCTTGGG
72109128 --ACACGCCCGTGT
1 ACACACGCCCGTGT
72109140 CCTCAGCCTG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
20 11 0.21
22 42 0.79
ACGTcount: A:0.12, C:0.33, G:0.37, T:0.18
Consensus pattern (22 bp):
ACACACGCCCGTGTGGCTTGGG
Found at i:72117350 original size:21 final size:20
Alignment explanation
Indices: 72117322--72117360 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
72117312 TTTGGGATTA
72117322 AAATATGAAAATGATAATCC
1 AAATATGAAAATGATAATCC
72117342 AAATGATGAAAATGATAAT
1 AAAT-ATGAAAATGATAAT
72117361 TATTTTTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.56, C:0.05, G:0.13, T:0.26
Consensus pattern (20 bp):
AAATATGAAAATGATAATCC
Found at i:72119932 original size:14 final size:14
Alignment explanation
Indices: 72119913--72119940 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
72119903 ACCATCTGAG
72119913 CTTTCGGGTAAAAA
1 CTTTCGGGTAAAAA
72119927 CTTTCGGGTAAAAA
1 CTTTCGGGTAAAAA
72119941 TGAATCAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (14 bp):
CTTTCGGGTAAAAA
Found at i:72120981 original size:32 final size:32
Alignment explanation
Indices: 72120940--72121006 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
72120930 AAAGAGAAGG
72120940 TGAAAAAAGCCAGAATTTTGTCAGATTAGATA
1 TGAAAAAAGCCAGAATTTTGTCAGATTAGATA
72120972 TGAAAAAAGCCAGAATTTTGTCAGATTAGATA
1 TGAAAAAAGCCAGAATTTTGTCAGATTAGATA
72121004 TGA
1 TGA
72121007 CGCAGAAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.28
Consensus pattern (32 bp):
TGAAAAAAGCCAGAATTTTGTCAGATTAGATA
Found at i:72127754 original size:6 final size:6
Alignment explanation
Indices: 72127745--72127774 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
72127735 ATATTTAAGA
*
72127745 TTAATT TTAATT TTAATT TTAATA TTAATT
1 TTAATT TTAATT TTAATT TTAATT TTAATT
72127775 AAATAATGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (6 bp):
TTAATT
Found at i:72127760 original size:12 final size:12
Alignment explanation
Indices: 72127722--72127774 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 12
72127712 AGATATTTTA
72127722 ATTAATTTT-AT
1 ATTAATTTTAAT
*
72127733 -TT-ATATTTAAG
1 ATTAAT-TTTAAT
72127744 ATTAATTTTAAT
1 ATTAATTTTAAT
*
72127756 TTTAATTTTAAT
1 ATTAATTTTAAT
72127768 ATTAATT
1 ATTAATT
72127775 AAATAATGCA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
9 2 0.06
10 5 0.15
11 1 0.03
12 24 0.71
13 2 0.06
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (12 bp):
ATTAATTTTAAT
Found at i:72132390 original size:30 final size:30
Alignment explanation
Indices: 72132356--72132418 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
72132346 ACTTAACAAG
72132356 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
72132386 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
72132416 CAA
1 CAA
72132419 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.16, G:0.02, T:0.24
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:72134072 original size:3 final size:3
Alignment explanation
Indices: 72134064--72134199 Score: 218
Period size: 3 Copynumber: 45.0 Consensus size: 3
72134054 AAGGGCCCAA
72134064 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
72134112 ATT ATT ATT ATT ATT ATT ATT ATT ATC ACT ACT ACT ATT ATT ATT AAAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT
72134161 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
72134200 TTTTACAAAT
Statistics
Matches: 126, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
3 124 0.98
4 2 0.02
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:72134725 original size:149 final size:148
Alignment explanation
Indices: 72134528--72134818 Score: 381
Period size: 149 Copynumber: 2.0 Consensus size: 148
72134518 TAAAAGAGAG
*
72134528 TTTAGATTTTTAAAATAAAAACATGTTTTTTAGTCATATCAAAGGAAAAGTTTAA-ATTTTTAAA
1 TTTAGATTTTTAAAAT-AAAACATATTTTTTAGTCATATCAAAGGAAAAGTTTAATATTTTTAAA
* * * * * *
72134592 ACAAAGTTTTGATTTTTTTTCACCTATTTTGAAATAAAGTTTTTTTATTTTTAAGAAAAATAGTG
65 ACAAAGTTTTGA-TCTTGTCCAACTATTTCGAAATAAAG--TTTTGATTTTTAAGAAAAATAGT-
*
72134657 ATTTTTTTAAA-AAAAGAGAAAT
126 AATTTTTTAAAGAAAAGAGAAAT
* * ** *
72134679 TTTAGATTTTTAAAAT-AAATATATTTTTTAGTCATTTTTAAGGAAAAGTTTAATTTTTTTAAAA
1 TTTAGATTTTTAAAATAAAACATATTTTTTAGTCATATCAAAGGAAAAGTTTAATATTTTTAAAA
* *
72134743 CAAATTTTTGATCTTGTCCAACTATTTCGAAATAAAGTTTTGATTTTTAAGAAAAGTAGTAATTT
66 CAAAGTTTTGATCTTGTCCAACTATTTCGAAATAAAGTTTTGATTTTTAAGAAAAATAGTAATTT
72134808 TTTAAAGAAAA
131 TTTAAAGAAAA
72134819 CTTTGATTTT
Statistics
Matches: 123, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
146 10 0.08
147 25 0.20
149 53 0.43
150 19 0.15
151 16 0.13
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (148 bp):
TTTAGATTTTTAAAATAAAACATATTTTTTAGTCATATCAAAGGAAAAGTTTAATATTTTTAAAA
CAAAGTTTTGATCTTGTCCAACTATTTCGAAATAAAGTTTTGATTTTTAAGAAAAATAGTAATTT
TTTAAAGAAAAGAGAAAT
Found at i:72145850 original size:14 final size:14
Alignment explanation
Indices: 72145831--72145861 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
72145821 AAAAACGAGA
72145831 CAAAAATCACTCAC
1 CAAAAATCACTCAC
72145845 CAAAAATCACTCAC
1 CAAAAATCACTCAC
72145859 CAA
1 CAA
72145862 TTGACAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.35, G:0.00, T:0.13
Consensus pattern (14 bp):
CAAAAATCACTCAC
Found at i:72147058 original size:18 final size:18
Alignment explanation
Indices: 72147032--72147066 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
72147022 ATATATTAAT
72147032 CCAAGTACCCAACCCAAC
1 CCAAGTACCCAACCCAAC
*
72147050 CCAATTACCCAACCCAA
1 CCAAGTACCCAACCCAA
72147067 TCATAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.49, G:0.03, T:0.09
Consensus pattern (18 bp):
CCAAGTACCCAACCCAAC
Found at i:72147059 original size:13 final size:13
Alignment explanation
Indices: 72147043--72147067 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72147033 CAAGTACCCA
72147043 ACCCAACCCAATT
1 ACCCAACCCAATT
72147056 ACCCAACCCAAT
1 ACCCAACCCAAT
72147068 CATAAAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:72147166 original size:9 final size:9
Alignment explanation
Indices: 72147152--72147219 Score: 75
Period size: 9 Copynumber: 7.6 Consensus size: 9
72147142 TTTATACAAA
*
72147152 TAATTCTGT
1 TAATTCGGT
*
72147161 TAATTCGGG
1 TAATTCGGT
*
72147170 TAATTCGGG
1 TAATTCGGT
72147179 TAATTCAGG-
1 TAATTC-GGT
72147188 TAATTCGGT
1 TAATTCGGT
* *
72147197 TAACTCGAT
1 TAATTCGGT
72147206 TAATTCGGT
1 TAATTCGGT
72147215 TAATT
1 TAATT
72147220 TTATACTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
8 2 0.04
9 47 0.92
10 2 0.04
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (9 bp):
TAATTCGGT
Found at i:72157196 original size:21 final size:21
Alignment explanation
Indices: 72157172--72157216 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
72157162 TTCAACATAA
72157172 AAAATGTTCACACTAAGAATT
1 AAAATGTTCACACTAAGAATT
*
72157193 AAAATGTTCACACTAAGCATT
1 AAAATGTTCACACTAAGAATT
72157214 AAA
1 AAA
72157217 TCAAATTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.49, C:0.16, G:0.09, T:0.27
Consensus pattern (21 bp):
AAAATGTTCACACTAAGAATT
Found at i:72160784 original size:45 final size:45
Alignment explanation
Indices: 72160735--72160896 Score: 130
Period size: 45 Copynumber: 3.6 Consensus size: 45
72160725 TTCCAAAGGA
* **
72160735 TGCCATGGTATCTTCCAACCGTGGTCTTATGCA-TTCCAGATGTAG
1 TGCCATGGTATCTTCCAACCATGGTCTTACACATTTCCAG-TGTAG
* * * * *
72160780 TGCCATAGTATCTTTCAACTATGGTCTTACACATTTTCAGTTTAG
1 TGCCATGGTATCTTCCAACCATGGTCTTACACATTTCCAGTGTAG
* ** * ** * *
72160825 TGCCATGGTATCTTTCAATTATGGTCTTACTCA-TTCTTGTTTAA
1 TGCCATGGTATCTTCCAACCATGGTCTTACACATTTCCAGTGTAG
* * *
72160869 TGCCATAGTATCTTTCAACTATGGTCTT
1 TGCCATGGTATCTTCCAACCATGGTCTT
72160897 TCTCATTTGG
Statistics
Matches: 99, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
44 33 0.33
45 61 0.62
46 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (45 bp):
TGCCATGGTATCTTCCAACCATGGTCTTACACATTTCCAGTGTAG
Found at i:72160882 original size:44 final size:43
Alignment explanation
Indices: 72160780--72160949 Score: 182
Period size: 45 Copynumber: 3.9 Consensus size: 43
72160770 CCAGATGTAG
* *
72160780 TGCCATAGTATCTTTCAACTATGGTCTTACACATTTTCAGTTTAG
1 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTT--GTTTAA
* *
72160825 TGCCATGGTATCTTTCAATTATGGTCTTACTCATTCTTGTTTAA
1 TGCCATAGTATCTTTCAACTATGGTCTTACTCATT-TTGTTTAA
* * **
72160869 TGCCATAGTATCTTTCAACTATGGTCTTTCTCATTTGGGGTAAAA
1 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTT--TGTTTAA
* *
72160914 TGCCAT-GATATCTTTCAATTATGGTCTTTCTC-TTTT
1 TGCCATAG-TATCTTTCAACTATGGTCTTACTCATTTT
72160950 CTCAATCCAA
Statistics
Matches: 109, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
43 1 0.01
44 41 0.38
45 65 0.60
46 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.45
Consensus pattern (43 bp):
TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTGTTTAA
Found at i:72161260 original size:109 final size:109
Alignment explanation
Indices: 72161130--72161348 Score: 402
Period size: 109 Copynumber: 2.0 Consensus size: 109
72161120 TCGTTTCTTG
* *
72161130 ATCTAGATAATACATTTCATTCAATTAAACCATTCAAATAACTTAAAATAATTAACTCAAACTTA
1 ATCTAGATAATAAATTTCATTCAATTAAACCATTCAAATAACTTAAAATAACTAACTCAAACTTA
**
72161195 TAACCCTTATCAATATAAATTTACAAAATTGTCCCCACATTTTA
66 TAACCCTTATCAATATAAATTTACAAAATTACCCCCACATTTTA
72161239 ATCTAGATAATAAATTTCATTCAATTAAACCATTCAAATAACTTAAAATAACTAACTCAAACTTA
1 ATCTAGATAATAAATTTCATTCAATTAAACCATTCAAATAACTTAAAATAACTAACTCAAACTTA
72161304 TAACCCTTATCAATATAAATTTACAAAATTACCCCCACATTTTA
66 TAACCCTTATCAATATAAATTTACAAAATTACCCCCACATTTTA
72161348 A
1 A
72161349 CCATTATGCA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
109 106 1.00
ACGTcount: A:0.45, C:0.20, G:0.01, T:0.34
Consensus pattern (109 bp):
ATCTAGATAATAAATTTCATTCAATTAAACCATTCAAATAACTTAAAATAACTAACTCAAACTTA
TAACCCTTATCAATATAAATTTACAAAATTACCCCCACATTTTA
Found at i:72164212 original size:25 final size:25
Alignment explanation
Indices: 72164183--72164234 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
72164173 CTCTTGGCAC
72164183 AAAATCTCAATAAACCTGAAACAAT
1 AAAATCTCAATAAACCTGAAACAAT
*
72164208 AAAATCTCAATCAACCTGAAACAAT
1 AAAATCTCAATAAACCTGAAACAAT
72164233 AA
1 AA
72164235 CTCATGTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.56, C:0.21, G:0.04, T:0.19
Consensus pattern (25 bp):
AAAATCTCAATAAACCTGAAACAAT
Found at i:72166739 original size:30 final size:29
Alignment explanation
Indices: 72166696--72166756 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
72166686 CAAGTAGCCG
72166696 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
72166725 AAGCTAGTTTAAATCGCACACTTAGTTCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
72166755 AA
1 AA
72166757 ACTTTCGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:72174003 original size:30 final size:29
Alignment explanation
Indices: 72173960--72174020 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
72173950 CAAGTAGCTG
72173960 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
72173989 AAGCTAGTTTAAATCGCATACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
72174019 AA
1 AA
72174021 ATTTTCGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:72179277 original size:11 final size:11
Alignment explanation
Indices: 72179261--72179292 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
72179251 ACTAAAGATT
72179261 GGATCTTTTAG
1 GGATCTTTTAG
72179272 GGATCTTTTAG
1 GGATCTTTTAG
*
72179283 GGATTTTTTA
1 GGATCTTTTA
72179293 AAGGGTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (11 bp):
GGATCTTTTAG
Found at i:72179699 original size:18 final size:18
Alignment explanation
Indices: 72179659--72179701 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
72179649 GTTCAAGGTG
72179659 TAATTAATTTAAAATTTT
1 TAATTAATTTAAAATTTT
* *
72179677 CAATTAA-TTAAATTTGTT
1 TAATTAATTTAAAATT-TT
72179695 TAATTAA
1 TAATTAA
72179702 AAACCTATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
TAATTAATTTAAAATTTT
Found at i:72181047 original size:29 final size:28
Alignment explanation
Indices: 72181005--72181093 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 28
72180995 ATATACTACA
* *
72181005 AATTTTTATTTTTTAAAATTTTGAAATTT
1 AATTTATATATTTTAAAATTTT-AAATTT
* *
72181034 AATTTATATATTTT-TATTTTTAGAATTT
1 AATTTATATATTTTAAAATTTTA-AATTT
72181062 AA-TTATATTATTTTTAAAATTTTAAATTT
1 AATTTATA-TA-TTTTAAAATTTTAAATTT
72181091 AAT
1 AAT
72181094 GTAATTATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
27 6 0.12
28 14 0.29
29 23 0.47
30 6 0.12
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (28 bp):
AATTTATATATTTTAAAATTTTAAATTT
Found at i:72181100 original size:29 final size:28
Alignment explanation
Indices: 72181014--72181102 Score: 101
Period size: 28 Copynumber: 3.1 Consensus size: 28
72181004 AAATTTTTAT
*
72181014 TTTTTAAAATTTTGAAATTTAATTTATATA
1 TTTTTAAAATTTT-AAATTTAATTAAT-TA
*
72181044 TTTTT--ATTTTTAGAATTTAATTATATTA
1 TTTTTAAAATTTTA-AATTTAATTA-ATTA
72181072 TTTTTAAAATTTTAAATTTAATGTAATTA
1 TTTTTAAAATTTTAAATTTAAT-TAATTA
72181101 TT
1 TT
72181103 AATATTATTA
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
27 1 0.02
28 21 0.41
29 16 0.31
30 13 0.25
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (28 bp):
TTTTTAAAATTTTAAATTTAATTAATTA
Found at i:72187889 original size:47 final size:47
Alignment explanation
Indices: 72187732--72187864 Score: 239
Period size: 47 Copynumber: 2.8 Consensus size: 47
72187722 CCGGGATAAG
* *
72187732 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
72187779 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
*
72187826 CACAAAGTACTTCATCGGAACAAATCCGGAGCTTTAACA
1 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACA
72187865 GTAGTCGACA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 83 1.00
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (47 bp):
CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
Found at i:72191499 original size:27 final size:27
Alignment explanation
Indices: 72191459--72191653 Score: 234
Period size: 27 Copynumber: 7.2 Consensus size: 27
72191449 AGGAAGCGTC
*
72191459 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
*
72191486 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
72191512 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAAATATCTGAT
* *
72191540 CTGGTGGCTCTACCACATATATCTG-T
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
72191566 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAAATATCTGAT
* * *
72191594 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
*
72191621 CTGGTGGCTCTACCAC-AATATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
72191648 CTGGTG
1 CTGGTG
72191654 ATTTCGTCAC
Statistics
Matches: 141, Mismatches: 22, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
26 9 0.06
27 130 0.92
28 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:72191538 original size:54 final size:54
Alignment explanation
Indices: 72191456--72191653 Score: 326
Period size: 54 Copynumber: 3.7 Consensus size: 54
72191446 TGGAGGAAGC
*
72191456 GTCCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
72191510 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
72191564 GTCCTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
72191618 GTTCTGGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
72191654 ATTTCGTCAC
Statistics
Matches: 135, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
53 6 0.04
54 129 0.96
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:72193563 original size:35 final size:35
Alignment explanation
Indices: 72193520--72193737 Score: 213
Period size: 35 Copynumber: 6.2 Consensus size: 35
72193510 GCGTGTTTCG
* *
72193520 GTTGGATTATCTCTTATGAGCATTGACGTGTTACA
1 GTTGGATTAGCTCTTATGAGCATTGACATGTTACA
* *
72193555 GTTTGATTAGCTCTTATGAGCATTGGCATGTTACA
1 GTTGGATTAGCTCTTATGAGCATTGACATGTTACA
* * * * *
72193590 GTTGGATTCGCTCTTATGAGCATTGTCGTGCTACG
1 GTTGGATTAGCTCTTATGAGCATTGACATGTTACA
**
72193625 GTTGGATTAGCTCTTATGAGCATT-AGCATGTTATG
1 GTTGGATTAGCTCTTATGAGCATTGA-CATGTTACA
** * * * *
72193660 GTTGGATTAGCTCTTATGAGCACAGGCGTGTTTCG
1 GTTGGATTAGCTCTTATGAGCATTGACATGTTACA
* * * * * *
72193695 GTTGGGTTAGCTCTTATGAGTATCGGCGTGTTATA
1 GTTGGATTAGCTCTTATGAGCATTGACATGTTACA
72193730 GTTGGATT
1 GTTGGATT
72193738 TACGATGTAC
Statistics
Matches: 152, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
35 152 1.00
ACGTcount: A:0.19, C:0.14, G:0.28, T:0.39
Consensus pattern (35 bp):
GTTGGATTAGCTCTTATGAGCATTGACATGTTACA
Found at i:72193604 original size:70 final size:70
Alignment explanation
Indices: 72193520--72193737 Score: 283
Period size: 70 Copynumber: 3.1 Consensus size: 70
72193510 GCGTGTTTCG
* * *
72193520 GTTGGATTATCTCTTATGAGCATTGACGTGTTACAGTTTGATTAGCTCTTATGAGCATTGGCATG
1 GTTGGATTAGCTCTTATGAGCATTGACGTGTTACGGTTGGATTAGCTCTTATGAGCATTGGCATG
*
72193585 TTACA
66 TTATA
* * * *
72193590 GTTGGATTCGCTCTTATGAGCATTGTCGTGCTACGGTTGGATTAGCTCTTATGAGCATTAGCATG
1 GTTGGATTAGCTCTTATGAGCATTGACGTGTTACGGTTGGATTAGCTCTTATGAGCATTGGCATG
*
72193655 TTATG
66 TTATA
** * * * * * *
72193660 GTTGGATTAGCTCTTATGAGCACAGGCGTGTTTCGGTTGGGTTAGCTCTTATGAGTATCGGCGTG
1 GTTGGATTAGCTCTTATGAGCATTGACGTGTTACGGTTGGATTAGCTCTTATGAGCATTGGCATG
72193725 TTATA
66 TTATA
72193730 GTTGGATT
1 GTTGGATT
72193738 TACGATGTAC
Statistics
Matches: 127, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
70 127 1.00
ACGTcount: A:0.19, C:0.14, G:0.28, T:0.39
Consensus pattern (70 bp):
GTTGGATTAGCTCTTATGAGCATTGACGTGTTACGGTTGGATTAGCTCTTATGAGCATTGGCATG
TTATA
Found at i:72193708 original size:105 final size:105
Alignment explanation
Indices: 72193518--72193714 Score: 270
Period size: 105 Copynumber: 1.9 Consensus size: 105
72193508 TGGCGTGTTT
* * * **
72193518 CGGTTGGATTATCTCTTATGAGCATTGACGTGTTACAGTTTGATTAGCTCTTATGAGCATTGGCA
1 CGGTTGGATTAGCTCTTATGAGCATTGACATGTTACAGTTGGATTAGCTCTTATGAGCACAGGCA
*
72193583 TGTTACAGTTGGATTCGCTCTTATGAGCATTGTCGTGCTA
66 TGTTACAGTTGGATTAGCTCTTATGAGCATTGTCGTGCTA
**
72193623 CGGTTGGATTAGCTCTTATGAGCATT-AGCATGTTATGGTTGGATTAGCTCTTATGAGCACAGGC
1 CGGTTGGATTAGCTCTTATGAGCATTGA-CATGTTACAGTTGGATTAGCTCTTATGAGCACAGGC
* * * *
72193687 GTGTTTCGGTTGGGTTAGCTCTTATGAG
65 ATGTTACAGTTGGATTAGCTCTTATGAG
72193715 TATCGGCGTG
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
104 1 0.01
105 78 0.99
ACGTcount: A:0.19, C:0.15, G:0.27, T:0.38
Consensus pattern (105 bp):
CGGTTGGATTAGCTCTTATGAGCATTGACATGTTACAGTTGGATTAGCTCTTATGAGCACAGGCA
TGTTACAGTTGGATTAGCTCTTATGAGCATTGTCGTGCTA
Found at i:72193734 original size:105 final size:105
Alignment explanation
Indices: 72193520--72193737 Score: 258
Period size: 105 Copynumber: 2.1 Consensus size: 105
72193510 GCGTGTTTCG
* * * **
72193520 GTTGGATTATCTCTTATGAGCATTGACGTGTTACAGTTTGATTAGCTCTTATGAGCATTGGCATG
1 GTTGGATTAGCTCTTATGAGCATTGACATGTTACAGTTGGATTAGCTCTTATGAGCACAGGCATG
* * * *
72193585 TTACAGTTGGATTCGCTCTTATGAGCATTGTCGTGCTACG
66 TTACAGTTGGATTAGCTCTTATGAGCATCGGCGTGCTACA
** *
72193625 GTTGGATTAGCTCTTATGAGCATT-AGCATGTTATGGTTGGATTAGCTCTTATGAGCACAGGCGT
1 GTTGGATTAGCTCTTATGAGCATTGA-CATGTTACAGTTGGATTAGCTCTTATGAGCACAGGCAT
* * * * * *
72193689 GTTTCGGTTGGGTTAGCTCTTATGAGTATCGGCGTGTTATA
65 GTTACAGTTGGATTAGCTCTTATGAGCATCGGCGTGCTACA
72193730 GTTGGATT
1 GTTGGATT
72193738 TACGATGTAC
Statistics
Matches: 94, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
104 1 0.01
105 93 0.99
ACGTcount: A:0.19, C:0.14, G:0.28, T:0.39
Consensus pattern (105 bp):
GTTGGATTAGCTCTTATGAGCATTGACATGTTACAGTTGGATTAGCTCTTATGAGCACAGGCATG
TTACAGTTGGATTAGCTCTTATGAGCATCGGCGTGCTACA
Found at i:72198406 original size:40 final size:39
Alignment explanation
Indices: 72198361--72198490 Score: 109
Period size: 40 Copynumber: 3.3 Consensus size: 39
72198351 CGGAATATAA
*
72198361 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTGGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
72198401 CCGGATAGAATGTC-TCGTACGAATGCCTTCGGGTCTCAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72198441 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
72198481 CCGGATATAA
1 CCGGATATAA
72198491 TTTCCAGCAT
Statistics
Matches: 67, Mismatches: 19, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
38 1 0.01
40 64 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72204087 original size:30 final size:30
Alignment explanation
Indices: 72204051--72204128 Score: 111
Period size: 30 Copynumber: 2.6 Consensus size: 30
72204041 GATGTTTGAC
* * * *
72204051 GTATCCCTTTTCTTTATTCGATAGCCGAGG
1 GTATCCCTTTTCATAATTCAATAGCCGAAG
72204081 GTATCCCTTTTCATAATTCAATAGCCGAAG
1 GTATCCCTTTTCATAATTCAATAGCCGAAG
*
72204111 CTATCCCTTTTCATAATT
1 GTATCCCTTTTCATAATT
72204129 TGATGGTTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (30 bp):
GTATCCCTTTTCATAATTCAATAGCCGAAG
Found at i:72204147 original size:30 final size:30
Alignment explanation
Indices: 72204113--72204275 Score: 161
Period size: 30 Copynumber: 5.5 Consensus size: 30
72204103 AGCCGAAGCT
*
72204113 ATCCCTTTTCATAATTTGATGGTTGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
** *
72204143 ATCCCTTTTCATAATTTGATAATCG-AAGCC
1 ATCCCTTTTCATAATTTGATGGTCGTCA-CC
**
72204173 ATCCCTTTTCATAATTCAATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
* * * * * *
72204203 ATCCCATTCCGTAA-CTGATGGTTGCCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
* * *
72204232 ATCCCATTCCATAA-CTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
72204261 ATCCCTTTTCATAAT
1 ATCCCTTTTCATAAT
72204276 CGATAGCCAA
Statistics
Matches: 108, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
29 49 0.45
30 58 0.54
31 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.36
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCGTCACC
Found at i:72204147 original size:60 final size:60
Alignment explanation
Indices: 72204083--72204299 Score: 192
Period size: 60 Copynumber: 3.7 Consensus size: 60
72204073 AGCCGAGGGT
* *
72204083 ATCCCTTTTCATAATTCAATAGCCGAAGCTATCCCTTTTCATAATTTGATGGTTGTCACC
1 ATCCCTTTTCATAATTCAATAGCCGAAGCCATCCCTTTTCATAATTTGATGGTCGTCACC
** ** **
72204143 ATCCCTTTTCATAATTTGATAATCGAAGCCATCCCTTTTCATAATTCAATGGTCGTCACC
1 ATCCCTTTTCATAATTCAATAGCCGAAGCCATCCCTTTTCATAATTTGATGGTCGTCACC
* * * * * * * * * *
72204203 ATCCCATTCCGTAACTGATGGTTGCC--A-CCATCCCATTCCATAA-CTGATGGTCGTCACC
1 ATCCCTTTTCATAATTCA--ATAGCCGAAGCCATCCCTTTTCATAATTTGATGGTCGTCACC
* * *
72204261 ATCCCTTTTCATAA-TCGATAGCCAAAGCTATCCCTTTTC
1 ATCCCTTTTCATAATTCAATAGCCGAAGCCATCCCTTTTC
72204300 GTAGTCGATA
Statistics
Matches: 119, Mismatches: 33, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
55 4 0.03
57 2 0.02
58 32 0.27
59 14 0.12
60 65 0.55
62 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.35
Consensus pattern (60 bp):
ATCCCTTTTCATAATTCAATAGCCGAAGCCATCCCTTTTCATAATTTGATGGTCGTCACC
Found at i:72204231 original size:29 final size:29
Alignment explanation
Indices: 72204191--72204274 Score: 114
Period size: 29 Copynumber: 2.9 Consensus size: 29
72204181 TCATAATTCA
* *
72204191 ATGGTCGTCACCATCCCATTCCGTAACTG
1 ATGGTCGCCACCATCCCATTCCATAACTG
*
72204220 ATGGTTGCCACCATCCCATTCCATAACTG
1 ATGGTCGCCACCATCCCATTCCATAACTG
* * *
72204249 ATGGTCGTCACCATCCCTTTTCATAA
1 ATGGTCGCCACCATCCCATTCCATAA
72204275 TCGATAGCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.23, C:0.33, G:0.14, T:0.30
Consensus pattern (29 bp):
ATGGTCGCCACCATCCCATTCCATAACTG
Found at i:72204293 original size:29 final size:29
Alignment explanation
Indices: 72204261--72204329 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 29
72204251 GGTCGTCACC
72204261 ATCCCTTTTCATAATCGATAGCCAAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
* * * *
72204290 ATCCCTTTTCGTAGTCGATAGTCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
*
72204319 ATCCCATTTCA
1 ATCCCTTTTCA
72204330 CCCGTCAATG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCAAAGCT
Found at i:72212826 original size:35 final size:35
Alignment explanation
Indices: 72212780--72212847 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
72212770 ACATATGTTG
*
72212780 CGGTTACTTGACAGCTTGTGTGAGTAGCACCGTAT
1 CGGTTACTTGACAGCTTGTGTGAGCAGCACCGTAT
72212815 CGGTTACTTGACAGCTTGTGTGAGCAGCACCGT
1 CGGTTACTTGACAGCTTGTGTGAGCAGCACCGT
72212848 GTAGCTATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (35 bp):
CGGTTACTTGACAGCTTGTGTGAGCAGCACCGTAT
Found at i:72213312 original size:10 final size:10
Alignment explanation
Indices: 72213297--72213344 Score: 78
Period size: 10 Copynumber: 4.8 Consensus size: 10
72213287 GCTCGGGTTG
72213297 GAGATCGTCA
1 GAGATCGTCA
*
72213307 GAGATCGTCG
1 GAGATCGTCA
72213317 GAGATCGTCA
1 GAGATCGTCA
*
72213327 GAGATCGTCG
1 GAGATCGTCA
72213337 GAGATCGT
1 GAGATCGT
72213345 ATCACACTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.25, C:0.19, G:0.35, T:0.21
Consensus pattern (10 bp):
GAGATCGTCA
Found at i:72213321 original size:20 final size:20
Alignment explanation
Indices: 72213296--72213344 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
72213286 AGCTCGGGTT
72213296 GGAGATCGTCAGAGATCGTC
1 GGAGATCGTCAGAGATCGTC
72213316 GGAGATCGTCAGAGATCGTC
1 GGAGATCGTCAGAGATCGTC
72213336 GGAGATCGT
1 GGAGATCGT
72213345 ATCACACTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.24, C:0.18, G:0.37, T:0.20
Consensus pattern (20 bp):
GGAGATCGTCAGAGATCGTC
Found at i:72213548 original size:2 final size:2
Alignment explanation
Indices: 72213541--72213571 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
72213531 GTTGTAAGCT
72213541 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
72213572 GCATGTGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:72221217 original size:13 final size:13
Alignment explanation
Indices: 72221199--72221223 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72221189 CTCGGCAGGG
72221199 ACACGCCCGTGTA
1 ACACGCCCGTGTA
72221212 ACACGCCCGTGT
1 ACACGCCCGTGT
72221224 GCGATTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (13 bp):
ACACGCCCGTGTA
Found at i:72224363 original size:29 final size:27
Alignment explanation
Indices: 72224267--72224364 Score: 79
Period size: 29 Copynumber: 3.4 Consensus size: 27
72224257 GGATAAAAAC
* *
72224267 ATAATAATTATGATTTTTTAATTTATATA
1 ATAATAATTAT--TTTATTAATTTATTTA
* ** *
72224296 ATAATAATTATATTAAGAATTTCATTAA
1 ATAATAATTATTTTATTAATTT-ATTTA
*
72224324 ATTATATATTATTTTATTAAGTTATATTTA
1 ATAATA-ATTATTTTATTAA-TT-TATTTA
72224354 ATAATAATTAT
1 ATAATAATTAT
72224365 GTTAAAATAT
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
27 7 0.13
28 8 0.15
29 26 0.49
30 11 0.21
31 1 0.02
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (27 bp):
ATAATAATTATTTTATTAATTTATTTA
Found at i:72224363 original size:58 final size:56
Alignment explanation
Indices: 72224279--72224432 Score: 186
Period size: 58 Copynumber: 2.7 Consensus size: 56
72224269 AATAATTATG
*
72224279 ATTTT-TTAATT-TATATAATAATAATTATATTAAGAATTTCATTAAATTATATATT
1 ATTTTATTAATTATATTTAATAATAATTATATTAA-AATTTCATTAAATTATATATT
* * ** *
72224334 ATTTTATTAAGTTATATTTAATAATAATTATGTTAAAATATGGTTAAATTATTTATT
1 ATTTTATTAA-TTATATTTAATAATAATTATATTAAAATTTCATTAAATTATATATT
* *
72224391 ATTTTTATTAAATTATTTTTAATAATAATTTTATTAAAATTT
1 A-TTTTATT-AATTATATTTAATAATAATTATATTAAAATTT
72224433 AATAACAATA
Statistics
Matches: 84, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
55 5 0.06
56 4 0.05
57 20 0.24
58 53 0.63
59 2 0.02
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.55
Consensus pattern (56 bp):
ATTTTATTAATTATATTTAATAATAATTATATTAAAATTTCATTAAATTATATATT
Found at i:72224407 original size:14 final size:14
Alignment explanation
Indices: 72224388--72224428 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
72224378 TAAATTATTT
72224388 ATTATTTTTATTAA
1 ATTATTTTTATTAA
*
72224402 ATTATTTTTAAT-A
1 ATTATTTTTATTAA
*
72224415 A-TAATTTTATTAA
1 ATTATTTTTATTAA
72224428 A
1 A
72224429 ATTTAATAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 8 0.35
13 4 0.17
14 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTATTTTTATTAA
Found at i:72224621 original size:16 final size:16
Alignment explanation
Indices: 72224597--72224648 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
72224587 TGAATTACTG
* *
72224597 ATTATAGCTCTCTTCC
1 ATTACAGCTCTATTCC
*
72224613 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
*
72224629 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
72224645 ATTA
1 ATTA
72224649 TAGTGAACCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.27, C:0.29, G:0.06, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:72227821 original size:46 final size:45
Alignment explanation
Indices: 72227766--72227941 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
72227756 TATTTGGGCA
72227766 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
72227812 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
72227859 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
72227905 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72227942 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 68 0.63
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:72227921 original size:93 final size:93
Alignment explanation
Indices: 72227762--72227933 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
72227752 ATGATATTTG
* * **
72227762 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
72227827 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
72227855 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
72227920 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
72227934 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:72235442 original size:3 final size:3
Alignment explanation
Indices: 72235434--72235464 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
72235424 TTGGTATGGC
*
72235434 AAG AAG AAG AAG AAT AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
72235465 TGATGTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:72235566 original size:31 final size:30
Alignment explanation
Indices: 72235525--72235583 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
72235515 TATTTGACTC
*
72235525 TTTTTAAAAA-GATTGATGGTCAAATTTAATT
1 TTTTTAAAAAGGA-TGA-GGACAAATTTAATT
*
72235556 TTTTTTAAAAGGATGAGGACAAATTTAA
1 TTTTTAAAAAGGATGAGGACAAATTTAA
72235584 CTCAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.44
31 12 0.48
32 2 0.08
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.41
Consensus pattern (30 bp):
TTTTTAAAAAGGATGAGGACAAATTTAATT
Found at i:72235579 original size:30 final size:32
Alignment explanation
Indices: 72235525--72235583 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 32
72235515 TATTTGACTC
*
72235525 TTTTTAAAAAGATTGATGGTCAAATTTAATTT
1 TTTTTAAAAAGATTGATGGACAAATTTAATTT
*
72235557 TTTTTAAAAGGA-TGA-GGACAAATTTAA
1 TTTTTAAAAAGATTGATGGACAAATTTAA
72235584 CTCAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 11 0.44
31 3 0.12
32 11 0.44
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.41
Consensus pattern (32 bp):
TTTTTAAAAAGATTGATGGACAAATTTAATTT
Found at i:72238902 original size:43 final size:43
Alignment explanation
Indices: 72238846--72238961 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
72238836 TATCACATAC
* * * * * *
72238846 CGATACCACTGTCCCAGACAAGGACTTACACAAAATTA-TATAA
1 CGATGCCAATGTCCCAGACATGGTCTTACACAAAATCAGAAT-A
* **
72238889 CGATGCCAATGTCCCAAACATGGTCTTACACGTAATCAGAATA
1 CGATGCCAATGTCCCAGACATGGTCTTACACAAAATCAGAATA
*
72238932 CAATGCCAATGTCCCAGACATGGTCTTACA
1 CGATGCCAATGTCCCAGACATGGTCTTACA
72238962 TGTAATCACA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 59 0.97
44 2 0.03
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACATGGTCTTACACAAAATCAGAATA
Found at i:72240840 original size:40 final size:40
Alignment explanation
Indices: 72240795--72240962 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
72240785 CGGAATATAA
72240795 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** ** * *
72240835 CCGGATGGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
72240875 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* *** * * * * *
72240915 CCGGATACAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
72240955 CCGGATAT
1 CCGGATAT
72240963 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72247635 original size:35 final size:35
Alignment explanation
Indices: 72247588--72247654 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
72247578 CCATAATGAC
*
72247588 ATTTCCCGATTATAACTGATTTGATAGATATAGAA
1 ATTTCCCGATTATAACTAATTTGATAGATATAGAA
* *
72247623 ATTTCCCTATTATAACTAATTTGATCGATATA
1 ATTTCCCGATTATAACTAATTTGATAGATATA
72247655 TTTCTATATC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.40
Consensus pattern (35 bp):
ATTTCCCGATTATAACTAATTTGATAGATATAGAA
Found at i:72255640 original size:13 final size:13
Alignment explanation
Indices: 72255622--72255657 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
72255612 GCCTCAGGCA
72255622 CGGGCGTGTGTCC
1 CGGGCGTGTGTCC
72255635 CGGGCGTGTGTCC
1 CGGGCGTGTGTCC
72255648 CGGGCGTGTG
1 CGGGCGTGTG
72255658 AAGCCTGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.00, C:0.28, G:0.50, T:0.22
Consensus pattern (13 bp):
CGGGCGTGTGTCC
Found at i:72256548 original size:15 final size:16
Alignment explanation
Indices: 72256528--72256558 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
72256518 TTTTCATTTG
72256528 CATTTCA-TTACTTTC
1 CATTTCATTTACTTTC
72256543 CATTTCATTTACTTTC
1 CATTTCATTTACTTTC
72256559 TTTAGCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.19, C:0.26, G:0.00, T:0.55
Consensus pattern (16 bp):
CATTTCATTTACTTTC
Found at i:72260876 original size:46 final size:45
Alignment explanation
Indices: 72260730--72261042 Score: 210
Period size: 46 Copynumber: 6.6 Consensus size: 45
72260720 TTTGTGTGCT
* *
72260730 AGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATTAT-TAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGA-GATGTAG-G-C
* * * *
72260776 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGAGC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGTAG-GC
*
72260823 TAGTGTAAGACATGTTTGGGACGTGCATCGGCCTCGAGATGTAAGGC
1 -AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGT-AGGC
* * *
72260870 AATGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT-GTC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAGATGTAGGC
* * *
72260914 AGTGTAAGACCATGTTTGGGACATGGAATCGGCAC-GGATATGTGAGAGC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGC-CTCGAGATGT-AG-GC
* ** *
72260963 TAGTGTAAGACCATGCTTGGGACATG-AT-GTTAGCCTCGATTTTGATAGTC
1 -AGTGTAAGA-CATGTTTGGGACATGCATCG---GCCTCGA-GATG-TAGGC
72261013 AGTGTAAGACCATGTTTGGGACATGGCATC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATC
72261043 AACTTGATTG
Statistics
Matches: 216, Mismatches: 26, Indels: 44
0.76 0.09 0.15
Matches are distributed among these distances:
44 10 0.05
45 15 0.07
46 70 0.32
47 29 0.13
48 28 0.13
49 27 0.12
50 29 0.13
51 7 0.03
52 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.26
Consensus pattern (45 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGTAGGC
Found at i:72260972 original size:94 final size:92
Alignment explanation
Indices: 72260727--72260988 Score: 270
Period size: 94 Copynumber: 2.8 Consensus size: 92
72260717 TTATTTGTGT
72260727 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATTAT-TAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGG-CACGA-TATGTAGAG-CAGTGTAAGACCATG
*
72260790 TCTGGGACATGGCATCGGCATTGAGACGAGA
63 TCTGGGACAT-GCATCGGCATCGAGACGAGA
* * * *
72260821 GCTAGTGTAAGACATGTTTGGGACGTGCATCGGCCTCGAGATGTA-AGGCAATGTAAGA-CATGT
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGG-CACGATATGTAGA-GCAGTGTAAGACCATGT
* *
72260884 CTGGGACATGCATCGGC-TACGAGATGTG-
64 CTGGGACATGCATCGGCAT-CGAGACGAGA
* *
72260912 TC-AGTGTAAGACCATGTTTGGGACATGGAATCGGCACGGATATGTGAGAGCTAGTGTAAGACCA
1 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCAC-GATATGT-AGAGC-AGTGTAAGACCA
72260976 TG-CTTGGGACATG
61 TGTC-TGGGACATG
72260989 ATGTTAGCCT
Statistics
Matches: 143, Mismatches: 13, Indels: 23
0.80 0.07 0.13
Matches are distributed among these distances:
90 9 0.06
91 17 0.12
92 26 0.18
93 17 0.12
94 57 0.40
95 17 0.12
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.24
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCACGATATGTAGAGCAGTGTAAGACCATGTCT
GGGACATGCATCGGCATCGAGACGAGA
Found at i:72267639 original size:47 final size:47
Alignment explanation
Indices: 72267529--72267745 Score: 143
Period size: 46 Copynumber: 4.7 Consensus size: 47
72267519 ACTATTGTGT
* *
72267529 GCTAGTGTAAGACATGTCTGGGACAT-GTATCGGCCACATTACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCACATGACGAGA
* * *
72267575 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGG-CA-GTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACAT--GACGAGA
* * * *
72267623 GCTAGTGTAAGACATGTTTGGGACAT-GCATCCG-C-CTTGA-AATGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCACATGACGA-G--A
* * * *
72267669 GCCAGTGTAAGACATGTTTGGGGCAT-GCATCGGCTAC--GA-GTTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCACATGACG--AGA
*
72267713 GCTAGTGTAAGACTATGTCCGGGACATGGCATC
1 GCTAGTGTAAGAC-ATGTCTGGGACATGGCATC
72267746 AGCATCCTAC
Statistics
Matches: 137, Mismatches: 20, Indels: 28
0.74 0.11 0.15
Matches are distributed among these distances:
43 1 0.01
44 16 0.12
45 10 0.07
46 57 0.42
47 29 0.21
48 24 0.18
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCACATGACGAGA
Found at i:72284409 original size:28 final size:27
Alignment explanation
Indices: 72284346--72284415 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
72284336 ATAGTGAGTC
*
72284346 CGCACACTTAGTGATATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
72284373 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
72284401 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72284416 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:72286603 original size:6 final size:6
Alignment explanation
Indices: 72286586--72286621 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
72286576 AAATTTCTAG
*
72286586 CTTTTCT CTTTTT CTTTTT CTTTCT CTTTTT CTTTT
1 CTTTT-T CTTTTT CTTTTT CTTTTT CTTTTT CTTTT
72286622 CATTCATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 22 0.81
7 5 0.19
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (6 bp):
CTTTTT
Found at i:72288440 original size:39 final size:39
Alignment explanation
Indices: 72288386--72288529 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
72288376 GAATGTTCGA
72288386 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
72288425 GTGATATCCAGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
72288464 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
72288503 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
72288530 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:72288476 original size:78 final size:79
Alignment explanation
Indices: 72288387--72288569 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
72288377 AATGTTCGAG
72288387 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCAGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCAGGCTAAGTCCCGAAGGC
72288451 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
72288465 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCAGGCTAAGTCCCGAAGGC
** *
72288530 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
72288544 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
72288570 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCAGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:72289986 original size:8 final size:8
Alignment explanation
Indices: 72289973--72290006 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
72289963 TGTTACAATA
72289973 ATAATAAT
1 ATAATAAT
72289981 ATAATAAT
1 ATAATAAT
*
72289989 ATAATGAT
1 ATAATAAT
72289997 ATAATAAT
1 ATAATAAT
72290005 AT
1 AT
72290007 TTACTTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (8 bp):
ATAATAAT
Found at i:72306991 original size:21 final size:21
Alignment explanation
Indices: 72306967--72307007 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
72306957 TGGGAATGTG
72306967 CCTTAGACACACGGCCGTGTT
1 CCTTAGACACACGGCCGTGTT
* *
72306988 CCTTAGCCACACGGTCGTGT
1 CCTTAGACACACGGCCGTGT
72307008 GAGTTTTCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.34, G:0.24, T:0.24
Consensus pattern (21 bp):
CCTTAGACACACGGCCGTGTT
Found at i:72310605 original size:46 final size:46
Alignment explanation
Indices: 72310458--72310591 Score: 232
Period size: 46 Copynumber: 2.9 Consensus size: 46
72310448 TGTAACCCGC
* * *
72310458 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
72310504 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
72310550 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
72310592 AACCATCCTA
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 84 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:72313011 original size:30 final size:30
Alignment explanation
Indices: 72312967--72313055 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
72312957 CAAAGATAAC
72312967 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
72312996 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
72313026 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
72313056 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:72313015 original size:15 final size:15
Alignment explanation
Indices: 72312967--72313046 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
72312957 CAAAGATAAC
*
72312967 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72312981 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
72312996 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
72313011 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72313026 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72313041 AAGAAA
1 AAGAAA
72313047 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72313055 original size:15 final size:15
Alignment explanation
Indices: 72312978--72313055 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72312968 AGAAAACCGA
72312978 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
72312993 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
72313007 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72313022 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72313038 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72313053 ATA
1 ATA
72313056 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72315771 original size:93 final size:93
Alignment explanation
Indices: 72315612--72315782 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
72315602 GCCCATAAGT
* * *
72315612 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72315677 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72315705 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72315770 CGAGTTCGGATGC
66 CGAGTTCGGATGC
72315783 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72315779 original size:46 final size:46
Alignment explanation
Indices: 72315604--72315784 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
72315594 TGTAACCCGC
* * * *
72315604 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
72315650 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
72315700 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
72315743 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
72315785 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:72326917 original size:2 final size:2
Alignment explanation
Indices: 72326910--72326945 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
72326900 TTTTGATTTG
72326910 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
72326946 GACATCTAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:72328288 original size:62 final size:61
Alignment explanation
Indices: 72328190--72328327 Score: 154
Period size: 62 Copynumber: 2.2 Consensus size: 61
72328180 ATCAGCCAAA
* * * ** * *
72328190 TCGCACACTCAATGCTAAATCTTTGTAATGTATCGCACACTTTGTGCCGTTACATTAA-CATC
1 TCGCACACTTAGTGCTAAATCTTTGTAACGTATCGCACACTCAGTGCCGTCAC-TTAATC-CC
* *
72328252 TCGCACACTTAGTGCTAAAATC-TTGTGACGTTTCGCACACTCAGTGCCGTCACTTAATCCC
1 TCGCACACTTAGTGCT-AAATCTTTGTAACGTATCGCACACTCAGTGCCGTCACTTAATCCC
72328313 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
72328328 CATATTTCTT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
61 20 0.31
62 40 0.62
63 5 0.08
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (61 bp):
TCGCACACTTAGTGCTAAATCTTTGTAACGTATCGCACACTCAGTGCCGTCACTTAATCCC
Found at i:72332522 original size:14 final size:14
Alignment explanation
Indices: 72332503--72332531 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
72332493 ACACATCTTT
72332503 TGCATTTTCTGCAA
1 TGCATTTTCTGCAA
72332517 TGCATTTTCTGCAA
1 TGCATTTTCTGCAA
72332531 T
1 T
72332532 TAGGTCCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.45
Consensus pattern (14 bp):
TGCATTTTCTGCAA
Found at i:72333770 original size:24 final size:24
Alignment explanation
Indices: 72333738--72333944 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
72333728 TATCTCAAAT
*
72333738 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
72333762 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
72333786 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
72333810 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
72333834 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
72333858 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
72333882 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
72333906 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
72333930 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
72333945 ACATAATAAG
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:72340679 original size:24 final size:24
Alignment explanation
Indices: 72340647--72340853 Score: 333
Period size: 24 Copynumber: 8.6 Consensus size: 24
72340637 TATCTCAAAT
*
72340647 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
72340671 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
72340695 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
72340719 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
72340743 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
72340767 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* * *
72340791 GCATTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
72340815 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
72340839 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
72340854 ACATAATAAG
Statistics
Matches: 175, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 175 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:72343100 original size:19 final size:19
Alignment explanation
Indices: 72343078--72343121 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
72343068 TTTATTTTTG
*
72343078 TTTTTAGTTTAAT-TTTTAT
1 TTTTTAATTT-ATCTTTTAT
*
72343097 TTTTTAATTTTTCTTTTAT
1 TTTTTAATTTATCTTTTAT
72343116 TTTTTA
1 TTTTTA
72343122 TGGCATGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 21 0.95
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTTAATTTATCTTTTAT
Found at i:72343249 original size:13 final size:13
Alignment explanation
Indices: 72343231--72343255 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72343221 AAGGCAAAGT
72343231 CGACAGAATATAA
1 CGACAGAATATAA
72343244 CGACAGAATATA
1 CGACAGAATATA
72343256 GTGGACGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (13 bp):
CGACAGAATATAA
Found at i:72347118 original size:6 final size:6
Alignment explanation
Indices: 72347055--72347105 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
72347045 AGTTAATTTG
72347055 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
72347103 TTT
1 TTT
72347106 ATTTTTATTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:72350318 original size:27 final size:26
Alignment explanation
Indices: 72350270--72350329 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
72350260 GCGAGGCTGC
*
72350270 CAGATATTGTGACTAAGTCACCAGATA
1 CAGATATTGTGACTAAGCCACCAGA-A
* *
72350297 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACTAAGCCACCAGAA
*
72350323 TAGATAT
1 CAGATAT
72350330 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (26 bp):
CAGATATTGTGACTAAGCCACCAGAA
Found at i:72357780 original size:2 final size:2
Alignment explanation
Indices: 72357773--72357800 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
72357763 CGGCTCTAGC
72357773 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72357801 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72358605 original size:40 final size:40
Alignment explanation
Indices: 72358509--72358727 Score: 251
Period size: 40 Copynumber: 5.5 Consensus size: 40
72358499 CGAATGGTAT
* * * *
72358509 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
72358550 CCGGG-TCAATTCCCGAAGACATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
72358590 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
72358630 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
72358670 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
72358710 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
72358728 ACAATCGAGC
Statistics
Matches: 154, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
40 130 0.84
41 24 0.16
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:72358723 original size:120 final size:121
Alignment explanation
Indices: 72358509--72358727 Score: 298
Period size: 120 Copynumber: 1.8 Consensus size: 121
72358499 CGAATGGTAT
* * *
72358509 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGACATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGACAATT
* * *
72358574 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * *
72358630 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGACAAT
* * *
72358693 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
72358728 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
119 1 0.01
120 58 0.69
121 25 0.30
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGACAATT
GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:72361042 original size:27 final size:26
Alignment explanation
Indices: 72360994--72361053 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
72360984 ACGAGGCTGC
* *
72360994 CAGATATTGTGACTAAGTCACCAGATA
1 CAGATATTATGACTAAGCCACCAGA-A
* *
72361021 CAGATATTATGGCTAGGCCACCAGAA
1 CAGATATTATGACTAAGCCACCAGAA
*
72361047 TAGATAT
1 CAGATAT
72361054 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (26 bp):
CAGATATTATGACTAAGCCACCAGAA
Found at i:72368871 original size:39 final size:39
Alignment explanation
Indices: 72368817--72368900 Score: 150
Period size: 39 Copynumber: 2.2 Consensus size: 39
72368807 AGTGATCAAA
*
72368817 TTGTTTTTTGTGCAATCTATTTGTAAGTATGTCTAGAAT
1 TTGTTTTTTGTGCAATCCATTTGTAAGTATGTCTAGAAT
*
72368856 TTGTTTTTTGTGCAATCCGTTTGTAAGTATGTCTAGAAT
1 TTGTTTTTTGTGCAATCCATTTGTAAGTATGTCTAGAAT
72368895 TTGTTT
1 TTGTTT
72368901 AGTCATTGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.20, C:0.08, G:0.19, T:0.52
Consensus pattern (39 bp):
TTGTTTTTTGTGCAATCCATTTGTAAGTATGTCTAGAAT
Found at i:72372088 original size:20 final size:20
Alignment explanation
Indices: 72372065--72372109 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
72372055 AGGGACTAAA
* *
72372065 ATGAAAATTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
72372085 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
72372105 ATGAA
1 ATGAA
72372110 TGCATGTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.11, T:0.38
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:72374933 original size:27 final size:26
Alignment explanation
Indices: 72374903--72375033 Score: 127
Period size: 27 Copynumber: 4.9 Consensus size: 26
72374893 GGCAAAATGG
* *
72374903 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTAT-TCGA
* *
72374930 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTA-TTCGA
* *
72374957 TATTTCTACTCTACAAGGGTATTACGA
1 TAATTCTACCCTACAAGGGTATT-CGA
* * **
72374984 TAATTCTACCTTACAGGGGTATTTAA
1 TAATTCTACCCTACAAGGGTATTCGA
*
72375010 GTAATTCTACCCTACAGGGGTATT
1 -TAATTCTACCCTACAAGGGTATT
72375034 TCAATCATTT
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.03
27 82 0.95
28 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (26 bp):
TAATTCTACCCTACAAGGGTATTCGA
Found at i:72374948 original size:54 final size:54
Alignment explanation
Indices: 72374890--72375002 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 54
72374880 TTAACACCCT
72374890 AGGGGCAAAAT-GGTAATTT-TACCCCACAAGGGTATCT-CGATAATTCTACCCTAC
1 AGGGG-AAAATCGGT-ATTTCTACCCCACAAGGGTAT-TACGATAATTCTACCCTAC
* ** * * *
72374944 AGGGGTATTTCGGTATTTCTACTCTACAAGGGTATTACGATAATTCTACCTTAC
1 AGGGGAAAATCGGTATTTCTACCCCACAAGGGTATTACGATAATTCTACCCTAC
72374998 AGGGG
1 AGGGG
72375003 TATTTAAGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
53 7 0.14
54 43 0.86
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30
Consensus pattern (54 bp):
AGGGGAAAATCGGTATTTCTACCCCACAAGGGTATTACGATAATTCTACCCTAC
Found at i:72375003 original size:54 final size:53
Alignment explanation
Indices: 72374902--72375033 Score: 174
Period size: 54 Copynumber: 2.5 Consensus size: 53
72374892 GGGCAAAATG
* * **
72374902 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTAT-TCGATAATTCTACCCTACAGGGGTATTTAA
* * *
72374956 GTATTTCTACTCTACAAGGGTATTACGATAATTCTACCTTACAGGGGTATTTAA
1 GTAATTCTACCCTACAAGGGTATT-CGATAATTCTACCCTACAGGGGTATTTAA
*
72375010 GTAATTCTACCCTACAGGGGTATT
1 GTAATTCTACCCTACAAGGGTATT
72375034 TCAATCATTT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 66 0.99
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (53 bp):
GTAATTCTACCCTACAAGGGTATTCGATAATTCTACCCTACAGGGGTATTTAA
Found at i:72375034 original size:27 final size:27
Alignment explanation
Indices: 72374930--72375034 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 27
72374920 GGTATCTCGA
**
72374930 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTAAG
* * * *
72374957 TATTTCTACTCTACAAGGGTA-TTACG
1 TAATTCTACCCTACAGGGGTATTTAAG
*
72374983 ATAATTCTACCTTACAGGGGTATTTAAG
1 -TAATTCTACCCTACAGGGGTATTTAAG
72375011 TAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
72375035 CAATCATTTT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.05
27 58 0.89
28 4 0.06
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTAAG
Found at i:72375222 original size:54 final size:53
Alignment explanation
Indices: 72375074--72375232 Score: 203
Period size: 54 Copynumber: 2.9 Consensus size: 53
72375064 GTAACTCTGT
* * * * ***
72375074 AAATCGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTCAC
1 AAATCAGGGGTATTTTGGTAATTTTACAA-ACCAGGGTATTTTGGTAATTTCAC
*
72375128 AAATCAGGGGTATTTTGGTAATTTTACAAACCAGTAGTATTTTGGTAATTTCAC
1 AAATCAGGGGTATTTTGGTAATTTTACAAACCAG-GGTATTTTGGTAATTTCAC
72375182 AAA-CTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
1 AAATC-AGGGGTATTTTGGTAATTTTACAAACC-AGGGTATTTTGGTAATTT
72375233 TGGTAATCGA
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
53 4 0.04
54 87 0.94
55 2 0.02
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (53 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAACCAGGGTATTTTGGTAATTTCAC
Found at i:72375249 original size:27 final size:27
Alignment explanation
Indices: 72375081--72375233 Score: 164
Period size: 27 Copynumber: 5.7 Consensus size: 27
72375071 TGTAAATCGG
* ** *
72375081 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
*** * * *
72375108 GGGTATTTCAATAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
72375135 GGGTATTTTGGTAATTTTACAAACC-A
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * *
72375161 GTAGTATTTTGGTAATTTCACAAACTAG
1 G-GGTATTTTGGTAATTTTACAAACCAA
72375189 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
72375216 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
72375234 GGTAATCGAG
Statistics
Matches: 102, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 100 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:72375249 original size:81 final size:80
Alignment explanation
Indices: 72375075--72375249 Score: 172
Period size: 81 Copynumber: 2.2 Consensus size: 80
72375065 TAACTCTGTA
* * * * * * *
72375075 AATCGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTCACAAATCAGGGGTA
1 AATCGAGGGTATTTTGGTAATTTCACAACTAGAGGGTATTTCAATAATTTCACAAACCAAGGGTA
72375140 TTTTGGTAATTTTAC
66 TTTTGGTAATTTTAC
* * * *** *
72375155 AAACCAGTAGTATTTTGGTAATTTCACAAACTAG-GGGTATTTTGGTAATTTTACAAACCAAGGG
1 AATCGAG-GGTATTTTGGTAATTTCAC-AACTAGAGGGTATTTCAATAATTTCACAAACCAAGGG
**
72375219 TATTTTGGTAATTTTGGT
64 TATTTTGGTAATTTT-AC
72375237 AATCGAGGGTATT
1 AATCGAGGGTATT
72375250 CAGTAGTTTT
Statistics
Matches: 73, Mismatches: 19, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
80 4 0.05
81 60 0.82
82 9 0.12
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (80 bp):
AATCGAGGGTATTTTGGTAATTTCACAACTAGAGGGTATTTCAATAATTTCACAAACCAAGGGTA
TTTTGGTAATTTTAC
Found at i:72375290 original size:27 final size:27
Alignment explanation
Indices: 72375209--72375292 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
72375199 GTAATTTTAC
**
72375209 AAACCAAGGGTATTTTGGTAATTTTGGT
1 AAACCAAGGGTATTTCAGTAA-TTTGGT
* * * *
72375237 -AATCGAGGGTA-TTCAGTAGTTTTGT
1 AAACCAAGGGTATTTCAGTAATTTGGT
*
72375262 AAACCAAGGGTATTTCAGTAACTTGGT
1 AAACCAAGGGTATTTCAGTAATTTGGT
72375289 AAAC
1 AAAC
72375293 TAAAGTATTC
Statistics
Matches: 43, Mismatches: 11, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
25 5 0.12
26 14 0.33
27 24 0.56
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTGGT
Found at i:72375883 original size:22 final size:22
Alignment explanation
Indices: 72375858--72375906 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
72375848 CGCCACCTTC
72375858 CTGCCTCTTATGTGGCACTACT
1 CTGCCTCTTATGTGGCACTACT
72375880 CTGCCTCTTATGTGGCACTACT
1 CTGCCTCTTATGTGGCACTACT
*
72375902 TTGCC
1 CTGCC
72375907 ACTAGACCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.12, C:0.33, G:0.18, T:0.37
Consensus pattern (22 bp):
CTGCCTCTTATGTGGCACTACT
Found at i:72381442 original size:56 final size:56
Alignment explanation
Indices: 72381382--72381569 Score: 277
Period size: 56 Copynumber: 3.4 Consensus size: 56
72381372 TCCCAGACAG
*
72381382 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * * ** *
72381438 GGTCTTACTCACACACATATATCGGAATCACATATTGATGCTAATATATTAAACAT
1 GGTCTTACTCACACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * *
72381494 GATCTTACTCACACACACATATCGAAATCACATATCCATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
*
72381550 GGTCTTACTCGCACACATAT
1 GGTCTTACTCACACACATAT
72381570 TGATGCCATG
Statistics
Matches: 113, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 113 1.00
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
Found at i:72386035 original size:10 final size:10
Alignment explanation
Indices: 72386020--72386051 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
72386010 TAAATACATT
72386020 TAATTAAAGA
1 TAATTAAAGA
72386030 TAATTAAAGA
1 TAATTAAAGA
72386040 TAATTAAA-A
1 TAATTAAAGA
72386049 TAA
1 TAA
72386052 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:72386077 original size:27 final size:26
Alignment explanation
Indices: 72386047--72386109 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
72386037 AGATAATTAA
72386047 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
72386074 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
72386101 AATATAAAT
1 AATA-AAAT
72386110 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:72386096 original size:15 final size:15
Alignment explanation
Indices: 72386076--72386105 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
72386066 ATAATCCTAA
*
72386076 TAATTATCTTAATAT
1 TAATTATCCTAATAT
72386091 TAATTATCCTAATAT
1 TAATTATCCTAATAT
72386106 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:72387661 original size:18 final size:16
Alignment explanation
Indices: 72387639--72387683 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 16
72387629 TTAATATCTG
72387639 AATAAAATAAAATAATA
1 AATAAAATAAAATAA-A
72387656 AGATAAAAT-AAATAAA
1 A-ATAAAATAAAATAAA
72387672 AATAAAA-AAAAT
1 AATAAAATAAAAT
72387684 TGGGTTACCT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 10 0.38
16 2 0.08
17 7 0.27
18 7 0.27
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (16 bp):
AATAAAATAAAATAAA
Found at i:72394063 original size:20 final size:20
Alignment explanation
Indices: 72394025--72394067 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
72394015 TAAATTCTAA
* **
72394025 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
72394045 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
72394065 AAA
1 AAA
72394068 ATTAAATCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:72398556 original size:23 final size:24
Alignment explanation
Indices: 72398525--72398673 Score: 218
Period size: 24 Copynumber: 6.4 Consensus size: 24
72398515 CTGGAGGCCT
*
72398525 AGCCTCTTTTAATAACT-GGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
72398549 AGCCCTTTTAATAACT-GGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
72398572 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
72398595 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
72398619 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
72398643 AG-CC-TTTAATAACTGAGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
72398665 AGCCCTTTT
1 AGCCCTTTT
72398674 GCACTTCCTC
Statistics
Matches: 117, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
22 28 0.24
23 39 0.33
24 50 0.43
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:72398626 original size:70 final size:69
Alignment explanation
Indices: 72398525--72398674 Score: 230
Period size: 70 Copynumber: 2.1 Consensus size: 69
72398515 CTGGAGGCCT
* *
72398525 AGCCTCTTTTAATAACTGGGCAAAAGCCCTTTTAATAACT-GGGCATAAGCCCTTTAATAACTGG
1 AGCC-CTTTTGATAACTGGGCAAAAGCCCTTTTAATAACTGGGGCATAAG-CCTTTAATAACTGA
72398589 GGCATA
64 GGCATA
* *
72398595 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCTTTAATAACTGAG
1 AGCCCTTTTGATAACT-GGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCTTTAATAACTGAG
72398660 GCATA
65 GCATA
72398665 AGCCCTTTTG
1 AGCCCTTTTG
72398675 CACTTCCTCC
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
69 11 0.15
70 54 0.73
71 9 0.12
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (69 bp):
AGCCCTTTTGATAACTGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCTTTAATAACTGAGG
CATA
Found at i:72398745 original size:9 final size:9
Alignment explanation
Indices: 72398731--72398787 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
72398721 ATCTCATGTG
72398731 CATATCATA
1 CATATCATA
*
72398740 CATATCATGTG
1 CATATCA--TA
72398751 CATATCATA
1 CATATCATA
* *
72398760 CATGTCATGTG
1 CATATCA--TA
72398771 CATATCATA
1 CATATCATA
72398780 CATATCAT
1 CATATCAT
72398788 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:72398747 original size:20 final size:20
Alignment explanation
Indices: 72398719--72398789 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
72398709 GCATTTATGA
*
72398719 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
72398739 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
72398759 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
72398779 ACATATCATGT
1 ACATATCATGT
72398790 TTATCAAATC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:72398754 original size:11 final size:11
Alignment explanation
Indices: 72398724--72398778 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
72398714 TATGAACATC
72398724 TCATGTGCATA
1 TCATGTGCATA
*
72398735 TCA--TACATA
1 TCATGTGCATA
72398744 TCATGTGCATA
1 TCATGTGCATA
* *
72398755 TCA--TACATG
1 TCATGTGCATA
72398764 TCATGTGCATA
1 TCATGTGCATA
72398775 TCAT
1 TCAT
72398779 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:72398852 original size:25 final size:25
Alignment explanation
Indices: 72398824--72398871 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72398814 CATATATAAA
* * *
72398824 ACCTAGGGGTATAATGGTCATTTTT
1 ACCTAGGGGCAAAACGGTCATTTTT
72398849 ACCTAGGGGCAAAACGGTCATTT
1 ACCTAGGGGCAAAACGGTCATTT
72398872 CATATTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (25 bp):
ACCTAGGGGCAAAACGGTCATTTTT
Found at i:72400504 original size:27 final size:26
Alignment explanation
Indices: 72400456--72400507 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72400446 GCGAGGCTGC
*
72400456 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
72400482 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
72400508 TTGCAGCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72409287 original size:47 final size:47
Alignment explanation
Indices: 72409213--72409306 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
72409203 CTTAAATATA
* *
72409213 AAAGTGTTTTACACTAGGCTTTTGACCTGTCAAAAGCTTATAAGGTG
1 AAAGTGTTTTACACTAGGCTTTCGACCTATCAAAAGCTTATAAGGTG
* *
72409260 AAAGTGTTTTAGACTAGGCTTTCGACCTATCCAAAGCTTATAAGGTG
1 AAAGTGTTTTACACTAGGCTTTCGACCTATCAAAAGCTTATAAGGTG
72409307 TTTTTGCAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (47 bp):
AAAGTGTTTTACACTAGGCTTTCGACCTATCAAAAGCTTATAAGGTG
Found at i:72411199 original size:2 final size:2
Alignment explanation
Indices: 72411194--72411238 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
72411184 ACTTAAAACC
72411194 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72411235 AT AT
1 AT AT
72411239 TCACTGACAT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:72412167 original size:2 final size:2
Alignment explanation
Indices: 72412160--72412186 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
72412150 TATAACCCTA
72412160 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
72412187 ACTTTTGCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:72412667 original size:16 final size:16
Alignment explanation
Indices: 72412646--72412680 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
72412636 TTTATGTCAA
72412646 GTATCTCCTCCACACT
1 GTATCTCCTCCACACT
*
72412662 GTATCTCCTCCACATT
1 GTATCTCCTCCACACT
72412678 GTA
1 GTA
72412681 GGCTCTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.20, C:0.37, G:0.09, T:0.34
Consensus pattern (16 bp):
GTATCTCCTCCACACT
Found at i:72416021 original size:21 final size:21
Alignment explanation
Indices: 72415995--72416036 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
72415985 TTCAACATTT
72415995 ATCATACT-ATATATTAATTCA
1 ATCATA-TAATATATTAATTCA
*
72416016 ATCATATAATATTTTAATTCA
1 ATCATATAATATATTAATTCA
72416037 CTTAATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (21 bp):
ATCATATAATATATTAATTCA
Found at i:72417421 original size:46 final size:45
Alignment explanation
Indices: 72417371--72417547 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 45
72417361 TGGTTGAGCA
72417371 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
72417417 TCCGAACTCGTTGAGTTGAGCCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
72417462 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
72417510 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGA
72417548 CGGGTTACAT
Statistics
Matches: 111, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 65 0.59
47 27 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:72417527 original size:93 final size:93
Alignment explanation
Indices: 72417368--72417538 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
72417358 GGATGGTTGA
* *
72417368 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72417433 TGAGCCCGAGTTCGTGAGATGTAACTAG
66 TGAGCCCGAGTTCGTGAGATGTAACTAG
* * *
72417461 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
72417526 TGAGTCCGAGTTC
66 TGAGCCCGAGTTC
72417539 ACTTATGGAC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGCCCGAGTTCGTGAGATGTAACTAG
Found at i:72420133 original size:13 final size:13
Alignment explanation
Indices: 72420115--72420140 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72420105 TATTATATCT
72420115 TCCAAATTTGAAC
1 TCCAAATTTGAAC
72420128 TCCAAATTTGAAC
1 TCCAAATTTGAAC
72420141 CCACTCCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
TCCAAATTTGAAC
Found at i:72426014 original size:1 final size:1
Alignment explanation
Indices: 72426008--72426041 Score: 68
Period size: 1 Copynumber: 34.0 Consensus size: 1
72425998 TTACCTGCAC
72426008 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
72426042 GACTGTCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:72428447 original size:23 final size:23
Alignment explanation
Indices: 72428427--72428482 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
72428417 GCATTTCTAT
72428427 TTTTTCTCTTCTTCCTCTTCTTA
1 TTTTTCTCTTCTTCCTCTTCTTA
* * * * *
72428450 TTCTTCTCCTCTTCTTTTTCTTC
1 TTTTTCTCTTCTTCCTCTTCTTA
72428473 TTTTTCTCTT
1 TTTTTCTCTT
72428483 TTTAAACCCT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (23 bp):
TTTTTCTCTTCTTCCTCTTCTTA
Done.