Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 240 of 335
Found at i:72730737 original size:29 final size:29
Alignment explanation
Indices: 72730704--72730805 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
72730694 TGACGAGATC
*
72730704 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
72730733 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
* * *
72730762 GGCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
**
72730791 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
72730806 AGCTCGAGGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAA
Found at i:72738810 original size:29 final size:29
Alignment explanation
Indices: 72738777--72738878 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
72738767 TGACGAGATC
*
72738777 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
72738806 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
* * *
72738835 GGCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
**
72738864 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
72738879 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAA
Found at i:72751231 original size:29 final size:29
Alignment explanation
Indices: 72751198--72751299 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
72751188 TGACGAGATC
*
72751198 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
72751227 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
* * *
72751256 GGCACTAAGTGTGCATGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAA
**
72751285 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
72751300 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAA
Found at i:72771072 original size:23 final size:23
Alignment explanation
Indices: 72771042--72771089 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
72771032 ACTTGAAAAC
72771042 TAAAAGCATTTGTAAGTGAGATG
1 TAAAAGCATTTGTAAGTGAGATG
72771065 TAAAAGCATTTGTAAGTGAGATG
1 TAAAAGCATTTGTAAGTGAGATG
72771088 TA
1 TA
72771090 TTGAAAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.31
Consensus pattern (23 bp):
TAAAAGCATTTGTAAGTGAGATG
Found at i:72776166 original size:2 final size:2
Alignment explanation
Indices: 72776159--72776197 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
72776149 TGAAAGTTGA
*
72776159 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
72776198 AAGTGATGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:72777445 original size:38 final size:38
Alignment explanation
Indices: 72777402--72777543 Score: 173
Period size: 38 Copynumber: 3.7 Consensus size: 38
72777392 AGCTTAAAGA
72777402 CCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCATGCTGGAATTATATCCGGGTTAAAT
*
72777440 CCCGCAGGCTTCGTGCTGGTAA-TATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGG-AATTATATCCGGGTTAAAT
* * * *
72777478 CCCGTAGGCTTCGTACTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAAT
* *
72777516 CCCGCAGGCCTAATGCT-GATATTATATC
1 CCCGCAGGCTTCATGCTGGA-ATTATATC
72777544 TGAGTTTAAA
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
37 3 0.03
38 85 0.94
39 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAAT
Found at i:72777503 original size:76 final size:78
Alignment explanation
Indices: 72777386--72777580 Score: 216
Period size: 76 Copynumber: 2.5 Consensus size: 78
72777376 ATTTGATGTG
* * * * * * *
72777386 TATCCGAGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCT
1 TATCCGAGGTTAAAGTCCCGTAGGCT-TCGTACTGGTATTATATCCGGGTTAAATCCCGCAGGCC
** *
72777450 TCGTGCTGGTAATA
65 TAATGCTGATAATA
72777464 TATCCG-GGTTAAA-TCCCGTAGGCTTCGTACTGGTATTATATCCGGGTTAAATCCCGCAGGCCT
1 TATCCGAGGTTAAAGTCCCGTAGGCTTCGTACTGGTATTATATCCGGGTTAAATCCCGCAGGCCT
*
72777527 AATGCTGATATTA
66 AATGCTGATAATA
* * * * *
72777540 TATCTGAGTTTAAAGTCCTGTAGGCTTCGTGCTGGTGTTAT
1 TATCCGAGGTTAAAGTCCCGTAGGCTTCGTACTGGTATTAT
72777581 GTTTGGGTTT
Statistics
Matches: 98, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
75 1 0.01
76 56 0.57
77 12 0.12
78 29 0.30
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (78 bp):
TATCCGAGGTTAAAGTCCCGTAGGCTTCGTACTGGTATTATATCCGGGTTAAATCCCGCAGGCCT
AATGCTGATAATA
Found at i:72779456 original size:40 final size:40
Alignment explanation
Indices: 72779412--72779595 Score: 226
Period size: 40 Copynumber: 4.5 Consensus size: 40
72779402 CAACAACTCG
*
72779412 GCTATGTATGGCACTTAGTGTGCGTTTCAAGATAGCTTCA
1 GCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCA
72779452 GCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCA
1 GCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCA
* * * * *
72779492 GCTATGTATGGCCCTCAGTGTGCGATTCGAGATAGCTCCG
1 GCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCA
* * * * **
72779532 GCTATGTGTTGTACTTAGTGTGCGAGATT-AAAATAGCTTTG
1 GCTATGTATGGCACTTAGTGTGC--GATTCAAGATAGCTTCA
72779573 GCTATGTATTGGCACTTAGTGTG
1 GCTATGTA-TGGCACTTAGTGTG
72779596 TGAGAATTTG
Statistics
Matches: 123, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 92 0.75
41 15 0.12
42 16 0.13
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (40 bp):
GCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCA
Found at i:72781711 original size:42 final size:42
Alignment explanation
Indices: 72781664--72781744 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
72781654 TATTTTAACT
72781664 AAATTAACTAAATAAAAGTATCCATCTTCTCAATTTAGTACA
1 AAATTAACTAAATAAAAGTATCCATCTTCTCAATTTAGTACA
*
72781706 AAATTAACTAAATAAAAGTGTCCATCTTCTCAATTTAGT
1 AAATTAACTAAATAAAAGTATCCATCTTCTCAATTTAGT
72781745 CCCCCATAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (42 bp):
AAATTAACTAAATAAAAGTATCCATCTTCTCAATTTAGTACA
Found at i:72784049 original size:20 final size:20
Alignment explanation
Indices: 72784024--72784070 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
72784014 ACACGGCCTG
72784024 ACCACACGGGCGTGTCCCAA
1 ACCACACGGGCGTGTCCCAA
72784044 ACCACACGGGCGTGTCCCAA
1 ACCACACGGGCGTGTCCCAA
*
72784064 AGCACAC
1 ACCACAC
72784071 AGGCATGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.28, C:0.40, G:0.23, T:0.09
Consensus pattern (20 bp):
ACCACACGGGCGTGTCCCAA
Found at i:72785245 original size:26 final size:28
Alignment explanation
Indices: 72785209--72785270 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
72785199 ATATTTTCTT
**
72785209 AAAATTTTACCA-GGG-GCAAAATAGTC
1 AAAATTTTACCATGGGTAAAAAATAGTC
*
72785235 AAAATTTTACCATGGGTAAAAAATCGTC
1 AAAATTTTACCATGGGTAAAAAATAGTC
72785263 AAAATTTT
1 AAAATTTT
72785271 GGTGGGGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 12 0.39
27 3 0.10
28 16 0.52
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.29
Consensus pattern (28 bp):
AAAATTTTACCATGGGTAAAAAATAGTC
Found at i:72786170 original size:31 final size:31
Alignment explanation
Indices: 72786133--72786201 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
72786123 CCCAGAAGAC
*
72786133 TATCTATTCTATGTTTGCTGTCCCAGTGGAT
1 TATCTATTCTATGTTTCCTGTCCCAGTGGAT
* * * *
72786164 TGTCTATTCTGTTTTTCCTGTCCCAGTGGGT
1 TATCTATTCTATGTTTCCTGTCCCAGTGGAT
72786195 TATCTAT
1 TATCTAT
72786202 ATGGATGCCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.13, C:0.20, G:0.19, T:0.48
Consensus pattern (31 bp):
TATCTATTCTATGTTTCCTGTCCCAGTGGAT
Found at i:72789070 original size:50 final size:49
Alignment explanation
Indices: 72788867--72789134 Score: 220
Period size: 46 Copynumber: 5.6 Consensus size: 49
72788857 GATGAGGGCT
* * * *
72788867 AGTGTAAGA-CATGTTTGGGACAT-GCATCGTCCTCGATA-TGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATTG-AGAGTC
* * * * *
72788913 AGTGTAAGA-CATGTCCGAGACAT-GCATCGGC-TACGAGA-T--GTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGATATTGAGAGTC
* *
72788957 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-CG-TATAGAG-GTGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATTGAGAGT--C
* * *
72789005 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATAGATATGTGAGAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATAT-TGAGAGTC
* * * *
72789055 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATTGAGAGTC
* *
72789104 AATGTAAGACCATGTCTGGGATATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
72789135 ACATTATACC
Statistics
Matches: 179, Mismatches: 29, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
44 11 0.06
45 14 0.08
46 42 0.23
47 1 0.01
48 32 0.18
49 35 0.20
50 39 0.22
51 3 0.02
52 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATTGAGAGTC
Found at i:72789130 original size:49 final size:50
Alignment explanation
Indices: 72788959--72789134 Score: 182
Period size: 50 Copynumber: 3.6 Consensus size: 50
72788949 GATGTGTTAG
* * * *
72788959 TGTAAGACCATGTTTGGGACATGGCATCGGCA-CG-TAT-AGAG-GTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGAGT--CAA
* * *
72789007 TGTAAGACCATGTCTGGGACATGGCATCGGTATAGATATGTGAGAGTTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGAGTCAA
* * * * *
72789057 TGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGAT-TTTGATAGTCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGAGTCAA
*
72789106 TGTAAGACCATGTCTGGGATATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
72789135 ACATTATACC
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
48 30 0.28
49 36 0.33
50 38 0.35
51 3 0.03
52 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGTGAGAGTCAA
Found at i:72790114 original size:28 final size:29
Alignment explanation
Indices: 72790079--72790133 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
72790069 CACGGGCTGA
*
72790079 GACACGGGCGTGT-CGAGGTCGTGTGAGG
1 GACACGGGCGTGTACGAGGCCGTGTGAGG
*
72790107 GACACGGGCGTGTACTAGGCCGTGTGA
1 GACACGGGCGTGTACGAGGCCGTGTGA
72790134 AAACCCCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.16, C:0.20, G:0.45, T:0.18
Consensus pattern (29 bp):
GACACGGGCGTGTACGAGGCCGTGTGAGG
Found at i:72799084 original size:21 final size:22
Alignment explanation
Indices: 72799043--72799088 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
72799033 ATAATATTTC
* *
72799043 ATAATTTACTATAATAACCTTT
1 ATAAATTAATATAATAACCTTT
72799065 ATAAATTAATATAA-AACCTTT
1 ATAAATTAATATAATAACCTTT
72799086 ATA
1 ATA
72799089 TTGGTTGTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (22 bp):
ATAAATTAATATAATAACCTTT
Found at i:72802962 original size:26 final size:26
Alignment explanation
Indices: 72802881--72802990 Score: 112
Period size: 26 Copynumber: 4.1 Consensus size: 26
72802871 AGGGCGTAAT
*
72802881 AGGCTTTATGTCGGTGTATATTTAGC
1 AGGCTTTATGCCGGTGTATATTTAGC
* * *
72802907 AAGCTTTGTTCCGGTGTATATTTAGC
1 AGGCTTTATGCCGGTGTATATTTAGC
* *
72802933 AGGCTTTCTGCCGGTGTATATTTAGT
1 AGGCTTTATGCCGGTGTATATTTAGC
* * *
72802959 AGGCATTAGTTGTCGGTGTTTTATTTAGC
1 AGGCTTTA--TGCCGGTG-TATATTTAGC
72802988 AGG
1 AGG
72802991 GTACTATGTA
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
26 50 0.74
28 7 0.10
29 11 0.16
ACGTcount: A:0.18, C:0.13, G:0.27, T:0.42
Consensus pattern (26 bp):
AGGCTTTATGCCGGTGTATATTTAGC
Found at i:72806079 original size:21 final size:22
Alignment explanation
Indices: 72806053--72806093 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
72806043 TGCTAGACAC
72806053 AGGGGC-ACACGCCCATGTGGG
1 AGGGGCAACACGCCCATGTGGG
*
72806074 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCATGTG
72806094 ACCAATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGTGGG
Found at i:72807308 original size:48 final size:46
Alignment explanation
Indices: 72807181--72807356 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 46
72807171 GGGATAGGAT
** *
72807181 GCCGATGCCATGTCCCTGACATGGTCTTACACTAG--CT--TAACTCGTA
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGTAA-TC-TG
*
72807227 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGT-CTCACTG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTAAT--CTG
* *
72807274 G-CGATGCCTTGTCCCAAACATGGTCTTACACTAGCTCTCGTAATGTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGTAATCTG
*
72807321 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTC
72807357 ACAATAGTCC
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
44 12 0.11
45 12 0.11
46 30 0.27
47 30 0.27
48 26 0.23
49 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTAATCTG
Found at i:72807353 original size:94 final size:92
Alignment explanation
Indices: 72807183--72807356 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 92
72807173 GATAGGATGC
**
72807183 CGATGCCATGTCCCTGACATGGTCTTACACTAGCTTAACTCGTAGCCGATGCATGTCCCAAACAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTTAACTCGTAGCCGATGCATGTCCCAAACAT
72807248 GTCTTACACTAGCTCTCGTCTCACTGG
66 GTCTTACACTAGCTCTCGTCTCACTGG
* * *
72807275 CGATGCCTTGTCCCAAACATGGTCTTACACTAGCTCTCGTAA-T-GTGGCCGATGCATGTCCCAG
1 CGATGCCATGTCCCAAACATGGTCTTACACTAG--CT--TAACTCGTAGCCGATGCATGTCCCAA
72807338 ACATGTCTTACACTAGCTC
62 ACATGTCTTACACTAGCTC
72807357 ACAATAGTCC
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
92 30 0.41
94 39 0.53
95 1 0.01
96 3 0.04
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (92 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTTAACTCGTAGCCGATGCATGTCCCAAACAT
GTCTTACACTAGCTCTCGTCTCACTGG
Found at i:72808418 original size:31 final size:31
Alignment explanation
Indices: 72808380--72808442 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
72808370 TAGTCTTTTT
72808380 TGCAATTGGGCTCATAAACATCAAAATTAAC
1 TGCAATTGGGCTCATAAACATCAAAATTAAC
72808411 TGCAATTGGGCTCATAAACATCAAAATTAAC
1 TGCAATTGGGCTCATAAACATCAAAATTAAC
72808442 T
1 T
72808443 CACCAAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (31 bp):
TGCAATTGGGCTCATAAACATCAAAATTAAC
Found at i:72809249 original size:21 final size:21
Alignment explanation
Indices: 72809224--72809273 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
72809214 TGTAACTTGG
*
72809224 AAAATTTTAGAAATTTTGCGA
1 AAAATTCTAGAAATTTTGCGA
72809245 AAAATTCTAGAAATTTTGCGA
1 AAAATTCTAGAAATTTTGCGA
72809266 AAAATTCT
1 AAAATTCT
72809274 TGGAGTCTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (21 bp):
AAAATTCTAGAAATTTTGCGA
Found at i:72823104 original size:35 final size:35
Alignment explanation
Indices: 72823054--72823493 Score: 562
Period size: 35 Copynumber: 12.6 Consensus size: 35
72823044 ACTCACTGTC
72823054 TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
1 TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
* *
72823089 TGGTGTGTTAT-GGTTGGATTAGCTCTTATGAGCAC
1 TGGCGTGTT-TCGGTTGGATTAGCTCTTATGAGCAT
*
72823124 TGGCGTGTTTCAGTTGGATTAGCTCTTATGAGCAT
1 TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
*
72823159 TGGTGCT-TTTCGGTTGGATTAGCTCTTATGAGCAT
1 TGGCG-TGTTTCGGTTGGATTAGCTCTTATGAGCAT
* * * *
72823194 TGGCATGTTTCGGTTGGATTAACTCTTATGAACAC
1 TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
*
72823229 TAGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
1 TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
* * * *
72823264 TGGTGTGTTACGGTTGGATTAGCTTTTATGAGCAC
1 TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
* * *
72823299 TAGTGTGTTTCGGTTGGATTAGCTCTTATGAGTAT
1 TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
* * * * *
72823334 TGACATGTTACGGTTAGATTAGCTCTTATGAGCAC
1 TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
* * *
72823369 TAGCATGTTTCGGTTAGATTAGCTCTTATGAGCAT
1 TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
* * * * *
72823404 TGGCATGTTACAGTTGGATTAGCTCTAATGAGCAC
1 TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
72823439 TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
1 TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
*
72823474 CGGCGTGTTAT-GGTTGGATT
1 TGGCGTGTT-TCGGTTGGATT
72823494 GACAACGTAC
Statistics
Matches: 349, Mismatches: 51, Indels: 10
0.85 0.12 0.02
Matches are distributed among these distances:
34 2 0.01
35 344 0.99
36 3 0.01
ACGTcount: A:0.18, C:0.14, G:0.28, T:0.39
Consensus pattern (35 bp):
TGGCGTGTTTCGGTTGGATTAGCTCTTATGAGCAT
Found at i:72825572 original size:20 final size:20
Alignment explanation
Indices: 72825547--72825703 Score: 86
Period size: 20 Copynumber: 7.8 Consensus size: 20
72825537 GAAATGAAGA
72825547 AGTGCCCCTGTTTGCACATT
1 AGTGCCCCTGTTTGCACATT
* * *
72825567 AGTGCCCTTGTTTGTACTTT
1 AGTGCCCCTGTTTGCACATT
* * * *
72825587 GGTTCCCTTGTTTGCACATC
1 AGTGCCCCTGTTTGCACATT
* *
72825607 AGTGCCCCTGATTGTAC-TT
1 AGTGCCCCTGTTTGCACATT
* * ** *
72825626 CGGTACCAATGTTTGCACATC
1 -AGTGCCCCTGTTTGCACATT
* *
72825647 AGTGCCTCTATTTGCAC-TT
1 AGTGCCCCTGTTTGCACATT
* **
72825666 CGGTGCCCCTGAATGCACACTT
1 -AGTGCCCCTGTTTGCACA-TT
*
72825688 -GTGCCCCTATTTGCAC
1 AGTGCCCCTGTTTGCAC
72825704 TTTGCTGCCC
Statistics
Matches: 97, Mismatches: 35, Indels: 10
0.68 0.25 0.07
Matches are distributed among these distances:
19 2 0.02
20 92 0.95
21 1 0.01
22 2 0.02
ACGTcount: A:0.15, C:0.29, G:0.20, T:0.36
Consensus pattern (20 bp):
AGTGCCCCTGTTTGCACATT
Found at i:72825611 original size:40 final size:40
Alignment explanation
Indices: 72825555--72825669 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
72825545 GAAGTGCCCC
* * * * * **
72825555 TGTTTGCACATTAGTGCCCTTGTTTGTACTTTGGTTCCCT
1 TGTTTGCACATCAGTGCCCCTGATTGTACTTCGGTACCAA
72825595 TGTTTGCACATCAGTGCCCCTGATTGTACTTCGGTACCAA
1 TGTTTGCACATCAGTGCCCCTGATTGTACTTCGGTACCAA
* *
72825635 TGTTTGCACATCAGTGCCTCT-ATTTGCACTTCGGT
1 TGTTTGCACATCAGTGCCCCTGA-TTGTACTTCGGT
72825670 GCCCCTGAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.02
40 64 0.98
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.40
Consensus pattern (40 bp):
TGTTTGCACATCAGTGCCCCTGATTGTACTTCGGTACCAA
Found at i:72825683 original size:40 final size:40
Alignment explanation
Indices: 72825548--72825756 Score: 113
Period size: 40 Copynumber: 5.2 Consensus size: 40
72825538 AAATGAAGAA
** * * * * *
72825548 GTGCCCCTGTTTGCACATTAGTGCCCTTGTTTGTACTTTG
1 GTGCCCCTGAATGCACATCAGTGCCCCTGATTGCACTTCG
* * ** *
72825588 GTTCCCTTGTTTGCACATCAGTGCCCCTGATTGTACTTCG
1 GTGCCCCTGAATGCACATCAGTGCCCCTGATTGCACTTCG
* ** ** *
72825628 GTACCAATGTTTGCACATCAGTGCCTCT-ATTTGCACTTCG
1 GTGCCCCTGAATGCACATCAGTGCCCCTGA-TTGCACTTCG
* *
72825668 GTGCCCCTGAATGCACA-CTTGTGCCCCT-ATTTGCACTTTG
1 GTGCCCCTGAATGCACATC-AGTGCCCCTGA-TTGCACTTCG
* * ** *
72825708 CTGCCCCT-AATCTCACATTC-GTGCTACTGATTGCACTTTG
1 GTGCCCCTGAAT-GCACA-TCAGTGCCCCTGATTGCACTTCG
72825748 GTGCCCCTG
1 GTGCCCCTG
72825757 TTATGCATCT
Statistics
Matches: 138, Mismatches: 24, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
39 5 0.04
40 131 0.95
41 1 0.01
42 1 0.01
ACGTcount: A:0.14, C:0.30, G:0.20, T:0.36
Consensus pattern (40 bp):
GTGCCCCTGAATGCACATCAGTGCCCCTGATTGCACTTCG
Found at i:72825712 original size:20 final size:19
Alignment explanation
Indices: 72825648--72825716 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 19
72825638 TTGCACATCA
* *
72825648 GTGCCTCTATTTGCACTTCG
1 GTGCCCCTATTTGCACTT-T
* *
72825668 GTGCCCCTGA-ATGCACACTT
1 GTGCCCCT-ATTTGCAC-TTT
72825688 GTGCCCCTATTTGCACTTT
1 GTGCCCCTATTTGCACTTT
72825707 GCTGCCCCTA
1 G-TGCCCCTA
72825717 ATCTCACATT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
19 4 0.10
20 33 0.85
21 2 0.05
ACGTcount: A:0.13, C:0.35, G:0.19, T:0.33
Consensus pattern (19 bp):
GTGCCCCTATTTGCACTTT
Found at i:72827587 original size:20 final size:20
Alignment explanation
Indices: 72827562--72827608 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
72827552 ATTTTGATAT
72827562 ACATGATATGCATGATATGC
1 ACATGATATGCATGATATGC
*
72827582 ACATGATATGTATGATATGC
1 ACATGATATGCATGATATGC
72827602 ACATGAT
1 ACATGAT
72827609 GTATTCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:72827588 original size:11 final size:10
Alignment explanation
Indices: 72827556--72827608 Score: 58
Period size: 9 Copynumber: 5.4 Consensus size: 10
72827546 TATGGGATTT
72827556 TGATAT-ACA
1 TGATATGACA
72827565 TGATATG-CA
1 TGATATGACA
72827574 TGATATGCACA
1 TGATATG-ACA
*
72827585 TGATATG-TA
1 TGATATGACA
72827594 TGATATGCACA
1 TGATATG-ACA
72827605 TGAT
1 TGAT
72827609 GTATTCATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
9 23 0.62
11 14 0.38
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (10 bp):
TGATATGACA
Found at i:72827688 original size:25 final size:24
Alignment explanation
Indices: 72827654--72827712 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 24
72827644 GGAGGAAGTG
72827654 CAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTTGCCCCAG-TTAT
*
72827679 CAAAAGGGC-TTTGGCCCAGTTAT
1 CAAAAGGGCTTTTGCCCCAGTTAT
*
72827702 TAAAAGAGGCT
1 CAAAAG-GGCT
72827713 AGGCCTCCAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 9 0.30
24 12 0.40
25 9 0.30
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTTTGCCCCAGTTAT
Found at i:72827717 original size:23 final size:24
Alignment explanation
Indices: 72827654--72827717 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 24
72827644 GGAGGAAGTG
* *
72827654 CAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGC-TTAGGCCCAGTTTAT
*
72827679 CAAAAGGGCTTTGGCCCAG-TTAT
1 CAAAAGGGCTTAGGCCCAGTTTAT
*
72827702 TAAAAGAGGC-TAGGCC
1 CAAAAG-GGCTTAGGCC
72827718 TCCAGTTAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 14 0.40
24 12 0.34
25 9 0.26
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (24 bp):
CAAAAGGGCTTAGGCCCAGTTTAT
Found at i:72827957 original size:31 final size:31
Alignment explanation
Indices: 72827919--72828002 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
72827909 TTGTTACAGT
*
72827919 AAAGGCTTCGGCCCTGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
72827950 AAAGGCTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
72827981 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
72828003 CTGGGATTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:72835563 original size:24 final size:24
Alignment explanation
Indices: 72835536--72835581 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
72835526 TTATGATATG
* * *
72835536 AAATGACTATTTTGCCCCTAGGTA
1 AAATGACCATTATACCCCTAGGTA
72835560 AAATGACCATTATACCCCTAGG
1 AAATGACCATTATACCCCTAGG
72835582 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (24 bp):
AAATGACCATTATACCCCTAGGTA
Found at i:72835643 original size:20 final size:20
Alignment explanation
Indices: 72835618--72835664 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
72835608 ATTTTGATAT
72835618 ACATGATATGCATGATATGC
1 ACATGATATGCATGATATGC
*
72835638 ACATGATATGTATGATATGC
1 ACATGATATGCATGATATGC
*
72835658 ATATGAT
1 ACATGAT
72835665 GTATTCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGCATGATATGC
Found at i:72835652 original size:9 final size:9
Alignment explanation
Indices: 72835612--72835659 Score: 60
Period size: 9 Copynumber: 5.1 Consensus size: 9
72835602 CATGGGATTT
*
72835612 TGATATACA
1 TGATATGCA
72835621 TGATATGCA
1 TGATATGCA
72835630 TGATATGCACA
1 TGATATG--CA
*
72835641 TGATATGTA
1 TGATATGCA
72835650 TGATATGCA
1 TGATATGCA
72835659 T
1 T
72835660 ATGATGTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 25 0.74
11 9 0.26
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (9 bp):
TGATATGCA
Found at i:72835777 original size:24 final size:25
Alignment explanation
Indices: 72835710--72835793 Score: 127
Period size: 25 Copynumber: 3.4 Consensus size: 25
72835700 GGAGGAAGTG
*
72835710 CAAAAGGGCTTTTGCCCCAATTTAT
1 CAAAAGGGCTTTTGCCCCAGTTTAT
72835735 CAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTTGCCCCAGTTTAT
72835760 CAAAAGGGC-TTTGCCCCAG-TTAT
1 CAAAAGGGCTTTTGCCCCAGTTTAT
*
72835783 TAAAAGAGGCT
1 CAAAAG-GGCT
72835794 AGGCCTCCAG
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
23 9 0.16
24 13 0.24
25 33 0.60
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (25 bp):
CAAAAGGGCTTTTGCCCCAGTTTAT
Found at i:72835804 original size:49 final size:50
Alignment explanation
Indices: 72835710--72835805 Score: 117
Period size: 49 Copynumber: 1.9 Consensus size: 50
72835700 GGAGGAAGTG
* **
72835710 CAAAAGGGCTTTTGCCCCAATTTATCAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTTGCCCCAAGTTATCAAAAGGGCTTAGGCCCCAGTTTAT
*
72835760 CAAAAGGGC-TTTGCCCC-AGTTATTAAAAGAGGC-TAGGCCTCCAGTT
1 CAAAAGGGCTTTTGCCCCAAGTTATCAAAAG-GGCTTAGGCC-CCAGTT
72835806 ATATGATAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
48 14 0.35
49 17 0.43
50 9 0.22
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (50 bp):
CAAAAGGGCTTTTGCCCCAAGTTATCAAAAGGGCTTAGGCCCCAGTTTAT
Found at i:72836037 original size:31 final size:31
Alignment explanation
Indices: 72835999--72836082 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
72835989 TTGTTACAGT
72835999 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
72836030 AAAGGCTTCGGCCTAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
72836061 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
72836083 CTGAGATTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:72841742 original size:29 final size:27
Alignment explanation
Indices: 72841708--72841810 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
72841698 TACTCGATCA
*
72841708 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
72841737 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
72841766 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
72841795 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72841811 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:72849686 original size:29 final size:27
Alignment explanation
Indices: 72849652--72849754 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
72849642 TACTCGATCA
*
72849652 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
72849681 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
72849710 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
72849739 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72849755 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:72854981 original size:29 final size:29
Alignment explanation
Indices: 72854938--72855040 Score: 120
Period size: 29 Copynumber: 3.6 Consensus size: 29
72854928 AGATTGGCAC
*
72854938 TGGCACT-AGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
72854966 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
72854995 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAAT-ATA
72855024 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
72855041 TCGAGTATTA
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
28 9 0.15
29 52 0.85
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:72862406 original size:28 final size:29
Alignment explanation
Indices: 72862375--72862474 Score: 109
Period size: 28 Copynumber: 3.6 Consensus size: 29
72862365 GTGACGAGAT
*
72862375 TGGCACT-AGTGTGCGAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* *
72862403 TGGCACTAAGTGTGCGAG--TGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * **
72862430 TGGCACTATGTGTGCGGGCTT-AAATCCA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
72862458 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
72862475 TCGAGTATTA
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
27 22 0.38
28 25 0.43
29 11 0.19
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:72865801 original size:40 final size:40
Alignment explanation
Indices: 72865693--72865941 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
72865683 CGGGATTTAA
* * * * *
72865693 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72865733 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72865773 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72865813 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72865853 CCGGATATATCAACTCGCACGAATGCCTTCGGG-CTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72865892 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72865932 CCGGATATAT
1 CCGGATATAT
72865942 TTCCAATGTT
Statistics
Matches: 191, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 40 0.21
40 151 0.79
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72873856 original size:40 final size:40
Alignment explanation
Indices: 72873748--72873997 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
72873738 CGGGATTTAA
* * * * *
72873748 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72873788 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72873828 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72873868 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72873908 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72873948 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72873988 CCGGATATAT
1 CCGGATATAT
72873998 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72876475 original size:20 final size:20
Alignment explanation
Indices: 72876425--72876475 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
72876415 TGGGATTTTG
*
72876425 ATGCACATGACATGTATGAT
1 ATGCACATGATATGTATGAT
72876445 ATGCACATGATATGTATGAT
1 ATGCACATGATATGTATGAT
72876465 ATGCACATGAT
1 ATGCACATGAT
72876476 GTAATCATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGCACATGATATGTATGAT
Found at i:72876556 original size:23 final size:23
Alignment explanation
Indices: 72876526--72876691 Score: 262
Period size: 24 Copynumber: 7.1 Consensus size: 23
72876516 AGGAAGTGCA
72876526 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
72876549 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
72876571 AAAGGGCTTATGCCCCAGTTGTCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
72876595 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
72876619 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
72876642 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
72876665 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
72876689 AAA
1 AAA
72876692 AGAGGCTAGG
Statistics
Matches: 135, Mismatches: 5, Indels: 6
0.92 0.03 0.04
Matches are distributed among these distances:
22 22 0.16
23 46 0.34
24 67 0.50
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:72876603 original size:24 final size:23
Alignment explanation
Indices: 72876525--72876713 Score: 256
Period size: 24 Copynumber: 8.0 Consensus size: 23
72876515 GAGGAAGTGC
72876525 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
72876548 TAAAGGGCTTATG-CCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
72876570 TAAAGGGCTTATGCCCCAGTTGT
1 AAAAGGGCTTATGCCCCAGTTAT
72876593 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
72876617 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
72876641 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
72876665 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
72876689 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72876713 A
1 A
72876714 TGATAAAGCA
Statistics
Matches: 152, Mismatches: 9, Indels: 9
0.89 0.05 0.05
Matches are distributed among these distances:
22 22 0.14
23 41 0.27
24 79 0.52
25 10 0.07
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:72876646 original size:47 final size:47
Alignment explanation
Indices: 72876524--72876691 Score: 268
Period size: 47 Copynumber: 3.6 Consensus size: 47
72876514 GGAGGAAGTG
72876524 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATG-CCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
72876570 -TAAAGGGCTTATGCCCCAGTTGTCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
72876617 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
72876664 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
72876692 AGAGGCTAGG
Statistics
Matches: 111, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
45 21 0.19
46 12 0.11
47 57 0.51
48 21 0.19
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:72876655 original size:71 final size:70
Alignment explanation
Indices: 72876524--72876712 Score: 283
Period size: 71 Copynumber: 2.7 Consensus size: 70
72876514 GGAGGAAGTG
*
72876524 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCA
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
*
72876588 GTTGT
66 GTTAT
72876593 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
72876658 AGTTAT
65 AGTTAT
* * *
72876664 TAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
72876713 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
69 24 0.22
70 12 0.11
71 62 0.56
72 12 0.11
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (70 bp):
CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
GTTAT
Found at i:72876939 original size:31 final size:31
Alignment explanation
Indices: 72876904--72876998 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
72876894 CGTTTACAGT
72876904 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
72876935 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
72876966 AAAGGCTCCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
72876997 AA
1 AA
72876999 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:72881960 original size:20 final size:20
Alignment explanation
Indices: 72881937--72882065 Score: 80
Period size: 20 Copynumber: 6.5 Consensus size: 20
72881927 TCAGAACTCT
72881937 TGTTTGCACATCAGTGCCCC
1 TGTTTGCACATCAGTGCCCC
* * * *
72881957 TGTTTGTACTTCAATACCCC
1 TGTTTGCACATCAGTGCCCC
* * * *
72881977 TATTTGCAAATCAATGCCTC
1 TGTTTGCACATCAGTGCCCC
* * *
72881997 TGTTTGCGCTTTAGTGCCCC
1 TGTTTGCACATCAGTGCCCC
* * *
72882017 TGTTTACACTTCGGTGCCCC
1 TGTTTGCACATCAGTGCCCC
* * *
72882037 TGATCGCACATTCA-TGCTCC
1 TGTTTGCACA-TCAGTGCCCC
*
72882057 TGATTGCAC
1 TGTTTGCAC
72882066 TTTGTTGCCC
Statistics
Matches: 80, Mismatches: 28, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
20 78 0.98
21 2 0.03
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.35
Consensus pattern (20 bp):
TGTTTGCACATCAGTGCCCC
Found at i:72882764 original size:35 final size:35
Alignment explanation
Indices: 72882725--72882977 Score: 292
Period size: 35 Copynumber: 7.2 Consensus size: 35
72882715 TGGCATTTTT
* * *
72882725 CGGTTGGATTAGCTCTTATAAGCATTAGCGTGTTA
1 CGGTTGGATTAGCTCTTATGAGCACTGGCGTGTTA
* *
72882760 CGGTTGGATTAGCTCTTATGAGCACCGGCGTGTTT
1 CGGTTGGATTAGCTCTTATGAGCACTGGCGTGTTA
* * * *
72882795 CAGTTGGATTAGCTCTTATGAGCATTCGTGTGTTA
1 CGGTTGGATTAGCTCTTATGAGCACTGGCGTGTTA
* * *
72882830 GGGTTGGATTAGCTCTTATGAGCACTGGTGTGTTT
1 CGGTTGGATTAGCTCTTATGAGCACTGGCGTGTTA
* * * *
72882865 CAGTTGGATTAACTCTTATGAGCATTAGCGTGTTA
1 CGGTTGGATTAGCTCTTATGAGCACTGGCGTGTTA
* * *
72882900 TGGTTGGATTAGCTCTTATGAGCACTGGCATGTTT
1 CGGTTGGATTAGCTCTTATGAGCACTGGCGTGTTA
* *
72882935 TGGTTGGATTAGCTCTTATGAGCA-TCGACGTGTTA
1 CGGTTGGATTAGCTCTTATGAGCACT-GGCGTGTTA
*
72882970 TGGTTGGA
1 CGGTTGGA
72882978 CTAACGATGT
Statistics
Matches: 184, Mismatches: 33, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
34 1 0.01
35 183 0.99
ACGTcount: A:0.19, C:0.14, G:0.29, T:0.38
Consensus pattern (35 bp):
CGGTTGGATTAGCTCTTATGAGCACTGGCGTGTTA
Found at i:72882813 original size:70 final size:70
Alignment explanation
Indices: 72882722--72882977 Score: 379
Period size: 70 Copynumber: 3.7 Consensus size: 70
72882712 GTCTGGCATT
* * * *
72882722 TTTCGGTTGGATTAGCTCTTATAAGCATTAGCGTGTTACGGTTGGATTAGCTCTTATGAGCACCG
1 TTTCAGTTGGATTAGCTCTTATGAGCATTAGCGTGTTATGGTTGGATTAGCTCTTATGAGCACTG
72882787 GCGTG
66 GCGTG
* * *
72882792 TTTCAGTTGGATTAGCTCTTATGAGCATTCGTGTGTTAGGGTTGGATTAGCTCTTATGAGCACTG
1 TTTCAGTTGGATTAGCTCTTATGAGCATTAGCGTGTTATGGTTGGATTAGCTCTTATGAGCACTG
*
72882857 GTGTG
66 GCGTG
*
72882862 TTTCAGTTGGATTAACTCTTATGAGCATTAGCGTGTTATGGTTGGATTAGCTCTTATGAGCACTG
1 TTTCAGTTGGATTAGCTCTTATGAGCATTAGCGTGTTATGGTTGGATTAGCTCTTATGAGCACTG
*
72882927 GCATG
66 GCGTG
** *
72882932 TTTTGGTTGGATTAGCTCTTATGAGCA-TCGACGTGTTATGGTTGGA
1 TTTCAGTTGGATTAGCTCTTATGAGCATTAG-CGTGTTATGGTTGGA
72882978 CTAACGATGT
Statistics
Matches: 168, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
69 2 0.01
70 166 0.99
ACGTcount: A:0.19, C:0.14, G:0.29, T:0.39
Consensus pattern (70 bp):
TTTCAGTTGGATTAGCTCTTATGAGCATTAGCGTGTTATGGTTGGATTAGCTCTTATGAGCACTG
GCGTG
Found at i:72883857 original size:136 final size:136
Alignment explanation
Indices: 72883613--72883877 Score: 485
Period size: 136 Copynumber: 1.9 Consensus size: 136
72883603 GTACATTCGT
* *
72883613 TAGGCACATAATAGGTTGATTTCGGCTCGATTAATGTCATTTTGAATATGTATTTTGGTTGGTCT
1 TAGGCACATAATAGGTTGATTTCGGATCGATTAATGTCATTTTGAAGATGTATTTTGGTTGGTCT
*
72883678 TTAAATTACTGAGGGTCCAAGCAAGTTTGAAATGGTAAACTTGTGGTTTAAGGTTCATTTTGGGG
66 TTAAATTACTGAGGGTCCAAGCAAGCTTGAAATGGTAAACTTGTGGTTTAAGGTTCATTTTGGGG
72883743 ACACAC
131 ACACAC
*
72883749 TAGGCACATAATAGGTTGATTTGGGATCGATTAATGTCATTTTGAAGATGTATTTTGGTTGGTCT
1 TAGGCACATAATAGGTTGATTTCGGATCGATTAATGTCATTTTGAAGATGTATTTTGGTTGGTCT
*
72883814 TTGAATTACTGAGGGTCCAAGCAAGCTTGAAATGGTAAACTTGTGGTTTAAGGTTCATTTTGGG
66 TTAAATTACTGAGGGTCCAAGCAAGCTTGAAATGGTAAACTTGTGGTTTAAGGTTCATTTTGGG
72883878 TCCACATGGC
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 124 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.38
Consensus pattern (136 bp):
TAGGCACATAATAGGTTGATTTCGGATCGATTAATGTCATTTTGAAGATGTATTTTGGTTGGTCT
TTAAATTACTGAGGGTCCAAGCAAGCTTGAAATGGTAAACTTGTGGTTTAAGGTTCATTTTGGGG
ACACAC
Found at i:72889946 original size:28 final size:28
Alignment explanation
Indices: 72889914--72889983 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
72889904 ATAGTAAGTC
72889914 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
72889942 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
72889970 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72889984 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:72892705 original size:60 final size:59
Alignment explanation
Indices: 72892641--72892774 Score: 144
Period size: 59 Copynumber: 2.3 Consensus size: 59
72892631 TCCCTAGACC
** * *
72892641 CCCAAATCAGTCACACGGCCATGTGTCCCGAAGCACACGCCCATATGGGAA-CCCTAATTT
1 CCCAAATCAGTCACACAACCATGTGTCCAGAA-CACACGCCCATAT-GGAAGCCCTAATTG
* ** * * *
72892701 CCCAAATCAGTTACACAACTGTGTGTCCATAACACACGCCCGTGTGGAAGCCCTAATTG
1 CCCAAATCAGTCACACAACCATGTGTCCAGAACACACGCCCATATGGAAGCCCTAATTG
*
72892760 CCAAAATCAGTCACA
1 CCCAAATCAGTCACA
72892775 TGGTCGTGTG
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
58 4 0.07
59 32 0.52
60 25 0.41
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (59 bp):
CCCAAATCAGTCACACAACCATGTGTCCAGAACACACGCCCATATGGAAGCCCTAATTG
Found at i:72893666 original size:16 final size:16
Alignment explanation
Indices: 72893645--72893686 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 16
72893635 TAGGTTGAGA
72893645 AAATT-ATTTAATTTAG
1 AAATTAATTT-ATTTAG
72893661 AAATTAATTTATTT--
1 AAATTAATTTATTTAG
72893675 AAATTAATTTAT
1 AAATTAATTTAT
72893687 GATGTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 12 0.48
16 9 0.36
17 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
AAATTAATTTATTTAG
Found at i:72895132 original size:61 final size:61
Alignment explanation
Indices: 72895020--72895134 Score: 158
Period size: 61 Copynumber: 1.9 Consensus size: 61
72895010 ATTGCTCTTA
* * *
72895020 TGACTCCAATGTTACAACACTGAAGGTCAAATGTCACAACACGAAAGACAGATTACTCTAT
1 TGACTCCAATCTCACAACACTGAAGGTCAAATGTCACAACACCAAAGACAGATTACTCTAT
** * * *
72895081 TGACTCCAATCTCACAACACTGAAGGTCGGATGTCACGACACCAGATACAGATT
1 TGACTCCAATCTCACAACACTGAAGGTCAAATGTCACAACACCAAAGACAGATT
72895135 GCCTAGAACG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.22
Consensus pattern (61 bp):
TGACTCCAATCTCACAACACTGAAGGTCAAATGTCACAACACCAAAGACAGATTACTCTAT
Found at i:72905621 original size:30 final size:30
Alignment explanation
Indices: 72905587--72905679 Score: 109
Period size: 30 Copynumber: 3.1 Consensus size: 30
72905577 AAATTATTAG
72905587 AAATTAATTAAAAACCAAAAAATTTATAAA
1 AAATTAATTAAAAACCAAAAAATTTATAAA
** * *
72905617 AAATT-ATATAAAAATTATAAAAA-TTATTAG
1 AAATTAAT-TAAAAACCA-AAAAATTTATAAA
*
72905647 AAATTAATTAAAAACCAAAAATTTTATAAA
1 AAATTAATTAAAAACCAAAAAATTTATAAA
72905677 AAA
1 AAA
72905680 ATTATCTTAT
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
29 6 0.12
30 37 0.74
31 7 0.14
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (30 bp):
AAATTAATTAAAAACCAAAAAATTTATAAA
Found at i:72905640 original size:60 final size:60
Alignment explanation
Indices: 72905548--72905684 Score: 224
Period size: 60 Copynumber: 2.3 Consensus size: 60
72905538 TAAATAAATT
*
72905548 AATTTATTAAAAAA--AGATAAAAATTATAAAAATTATTAGAAATTAATTAAAAACCAAAA
1 AATTTA-TAAAAAATTATATAAAAATTATAAAAATTATTAGAAATTAATTAAAAACCAAAA
72905607 AATTTATAAAAAATTATATAAAAATTATAAAAATTATTAGAAATTAATTAAAAACCAAAA
1 AATTTATAAAAAATTATATAAAAATTATAAAAATTATTAGAAATTAATTAAAAACCAAAA
*
72905667 ATTTTATAAAAAAATTAT
1 AATTTAT-AAAAAATTAT
72905685 CTTATTAAAT
Statistics
Matches: 73, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
58 7 0.10
59 6 0.08
60 50 0.68
61 10 0.14
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (60 bp):
AATTTATAAAAAATTATATAAAAATTATAAAAATTATTAGAAATTAATTAAAAACCAAAA
Found at i:72905645 original size:12 final size:10
Alignment explanation
Indices: 72905566--72905643 Score: 63
Period size: 9 Copynumber: 7.9 Consensus size: 10
72905556 AAAAAAAGAT
72905566 AAAAATTAT-
1 AAAAATTATA
*
72905575 AAAAATTATT
1 AAAAATTATA
* *
72905585 AGAAATTAATT
1 AAAAATT-ATA
**
72905596 AAAAACCA-A
1 AAAAATTATA
*
72905605 AAAATTTATA
1 AAAAATTATA
72905615 AAAAATTATA
1 AAAAATTATA
72905625 TAAAAATTAT-
1 -AAAAATTATA
72905635 AAAAATTAT
1 AAAAATTAT
72905644 TAGAAATTAA
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
9 23 0.41
10 17 0.30
11 16 0.29
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (10 bp):
AAAAATTATA
Found at i:72905650 original size:10 final size:10
Alignment explanation
Indices: 72905565--72905660 Score: 83
Period size: 11 Copynumber: 9.6 Consensus size: 10
72905555 TAAAAAAAGA
72905565 TAAAAATTA-
1 TAAAAATTAT
72905574 TAAAAATTAT
1 TAAAAATTAT
*
72905584 TAGAAATTAAT
1 TAAAAATT-AT
**
72905595 TAAAAACCA-
1 TAAAAATTAT
72905604 -AAAAATTTAT
1 TAAAAA-TTAT
*
72905614 AAAAAATTAT
1 TAAAAATTAT
72905624 ATAAAAATTA-
1 -TAAAAATTAT
72905634 TAAAAATTAT
1 TAAAAATTAT
*
72905644 TAGAAATTAAT
1 TAAAAATT-AT
72905655 TAAAAA
1 TAAAAA
72905661 CCAAAAATTT
Statistics
Matches: 70, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
8 5 0.07
9 19 0.27
10 19 0.27
11 27 0.39
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:72906026 original size:18 final size:19
Alignment explanation
Indices: 72906003--72906042 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
72905993 AAAATTATTG
72906003 TTTGA-TTTTTTTAATTTT
1 TTTGATTTTTTTTAATTTT
72906021 TTTGATTTTTTTTTAATTTT
1 TTTGA-TTTTTTTTAATTTT
72906041 TT
1 TT
72906043 GCTGACATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.25
20 15 0.75
ACGTcount: A:0.15, C:0.00, G:0.05, T:0.80
Consensus pattern (19 bp):
TTTGATTTTTTTTAATTTT
Found at i:72907831 original size:127 final size:124
Alignment explanation
Indices: 72907675--72907904 Score: 329
Period size: 127 Copynumber: 1.8 Consensus size: 124
72907665 GTCATTTTTA
* *
72907675 TATAATCTAAAAAATAGAGAGACAAAATTGCAATTTAACCATTATTGTTAATAATGTAAAAAA-A
1 TATAATCTAAAAAATAGAGAGACAAAATTGCAATTTAACCATTATTATTAATAATATAAAAAAGA
* * * *
72907739 GAATAAAGAAAGGACATGTGATTAAAGAAGGAAGGTCTTAGGGCCTTCTTTTTATATATAT
66 -AAGAAAGAAAGGACATAT-ATCAAAGAAGGAAGGCCTTAGGGCCTTCTTTTTATATATAT
* *
72907800 TATAATCTAAAAAAATAGAG-GTACCATAATTGCAATTTAATCATTATTATTAATAATATAAAAA
1 TATAATCT-AAAAAATAGAGAG-A-CAAAATTGCAATTTAACCATTATTATTAATAATATAAAAA
72907864 AGAAAGAAAGAAAGGACATATATCAAAGAAGGAAGGCCTTA
63 AGAAAGAAAGAAAGGACATATATCAAAGAAGGAAGGCCTTA
72907905 AGAAGTAGTA
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
125 9 0.10
126 30 0.32
127 53 0.57
128 1 0.01
ACGTcount: A:0.49, C:0.08, G:0.15, T:0.28
Consensus pattern (124 bp):
TATAATCTAAAAAATAGAGAGACAAAATTGCAATTTAACCATTATTATTAATAATATAAAAAAGA
AAGAAAGAAAGGACATATATCAAAGAAGGAAGGCCTTAGGGCCTTCTTTTTATATATAT
Found at i:72910560 original size:27 final size:26
Alignment explanation
Indices: 72910507--72910560 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
72910497 AGCTTAATCA
* * * *
72910507 TTTAATTAATTTGACTTTTATCTTTT
1 TTTAATTAATTTCACCTTTAACATTT
72910533 TTTAATTAAATTTCACCTTTAACATTT
1 TTTAATT-AATTTCACCTTTAACATTT
72910560 T
1 T
72910561 AAAAATAGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.59
Consensus pattern (26 bp):
TTTAATTAATTTCACCTTTAACATTT
Found at i:72911216 original size:6 final size:6
Alignment explanation
Indices: 72911205--72911230 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
72911195 CAAACCAAAT
72911205 AGAAAA AGAAAA AGAAAA AGAAAA AG
1 AGAAAA AGAAAA AGAAAA AGAAAA AG
72911231 CTTACCTCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:72913331 original size:15 final size:16
Alignment explanation
Indices: 72913311--72913340 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72913301 ACAAAACACA
72913311 TTCTTTT-CATTTTTT
1 TTCTTTTGCATTTTTT
72913326 TTCTTTTGCATTTTT
1 TTCTTTTGCATTTTT
72913341 ATCTGATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.07, C:0.13, G:0.03, T:0.77
Consensus pattern (16 bp):
TTCTTTTGCATTTTTT
Found at i:72917329 original size:41 final size:41
Alignment explanation
Indices: 72917284--72917366 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
72917274 ATCTTATGTT
72917284 AGCCAATTTAAGATTGTCTCACCCAACTGAAAAACAAATAA
1 AGCCAATTTAAGATTGTCTCACCCAACTGAAAAACAAATAA
72917325 AGCCAATTTAAGATTGTCTCACCCAACTGAAAAACAAATAA
1 AGCCAATTTAAGATTGTCTCACCCAACTGAAAAACAAATAA
72917366 A
1 A
72917367 TAAACAATGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.47, C:0.22, G:0.10, T:0.22
Consensus pattern (41 bp):
AGCCAATTTAAGATTGTCTCACCCAACTGAAAAACAAATAA
Found at i:72925108 original size:42 final size:42
Alignment explanation
Indices: 72925062--72925172 Score: 163
Period size: 42 Copynumber: 2.7 Consensus size: 42
72925052 CCTTGTGCTG
72925062 GTGTATTAAGTCGGGCTTTATTGCCTAGCAGGCTTTATGCCA
1 GTGTATTAAGTCGGGCTTTATTGCCTAGCAGGCTTTATGCCA
*
72925104 GTGTATTATA-TCGGGCTTTATTGCCTAGTAGGCTTTATGCCA
1 GTGTATTA-AGTCGGGCTTTATTGCCTAGCAGGCTTTATGCCA
* * *
72925146 GTGTATTATGTCAGGC-CTATTGCCTAG
1 GTGTATTAAGTCGGGCTTTATTGCCTAG
72925173 TAGGTTCTGT
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
41 10 0.16
42 52 0.83
43 1 0.02
ACGTcount: A:0.19, C:0.18, G:0.25, T:0.38
Consensus pattern (42 bp):
GTGTATTAAGTCGGGCTTTATTGCCTAGCAGGCTTTATGCCA
Found at i:72932370 original size:30 final size:29
Alignment explanation
Indices: 72932329--72932386 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
72932319 AACGGAAGTT
*
72932329 TTGGTACTAAGTGTGCGATTTAAACTAGCC
1 TTGGCACTAAGTGTGCGATTT-AACTAGCC
72932359 TTGGCACTAAGTGTGCGATTTAACTAGC
1 TTGGCACTAAGTGTGCGATTTAACTAGC
72932387 TTCGGCTACT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (29 bp):
TTGGCACTAAGTGTGCGATTTAACTAGCC
Found at i:72942681 original size:42 final size:42
Alignment explanation
Indices: 72942591--72942681 Score: 110
Period size: 42 Copynumber: 2.2 Consensus size: 42
72942581 TTGTGCTGGG
* * * * * *
72942591 GTATTAAATTGGGCTTTGTTGCCTAGCAGACTTTATGCCGGT
1 GTATTATATCGGGCTTTATTACCTAGCAAACTTTATGCCAGT
* *
72942633 GTATTATATCGGGCTTTATTACCTAGTAAACTTTATGCTAGT
1 GTATTATATCGGGCTTTATTACCTAGCAAACTTTATGCCAGT
72942675 GTATTAT
1 GTATTAT
72942682 GTCAGGCCTA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.23, C:0.14, G:0.21, T:0.42
Consensus pattern (42 bp):
GTATTATATCGGGCTTTATTACCTAGCAAACTTTATGCCAGT
Found at i:72945415 original size:34 final size:34
Alignment explanation
Indices: 72945370--72945458 Score: 144
Period size: 34 Copynumber: 2.6 Consensus size: 34
72945360 GATTGAATCC
72945370 ACTAGCTTTTGGATTAATTGTTCTTTTAGTCCTA
1 ACTAGCTTTTGGATTAATTGTTCTTTTAGTCCTA
*
72945404 ATTAGCTTTTGGATTAATTGTTCTTTTAGTCCTA
1 ACTAGCTTTTGGATTAATTGTTCTTTTAGTCCTA
*
72945438 ACTAG-TTTGGGATTAAATTGT
1 ACTAGCTTTTGGATT-AATTGT
72945459 AAATAAGTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
33 8 0.16
34 43 0.84
ACGTcount: A:0.22, C:0.11, G:0.17, T:0.49
Consensus pattern (34 bp):
ACTAGCTTTTGGATTAATTGTTCTTTTAGTCCTA
Found at i:72945429 original size:17 final size:17
Alignment explanation
Indices: 72945375--72945430 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
72945365 AATCCACTAG
72945375 CTTTTGGATTAATTGTT
1 CTTTTGGATTAATTGTT
*
72945392 CTTTTAG-TCCTAATTAG--
1 CTTTTGGAT--TAATT-GTT
72945409 CTTTTGGATTAATTGTT
1 CTTTTGGATTAATTGTT
72945426 CTTTT
1 CTTTT
72945431 AGTCCTAACT
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
15 1 0.03
16 6 0.19
17 17 0.55
18 6 0.19
19 1 0.03
ACGTcount: A:0.18, C:0.11, G:0.14, T:0.57
Consensus pattern (17 bp):
CTTTTGGATTAATTGTT
Found at i:72946586 original size:25 final size:24
Alignment explanation
Indices: 72946525--72946590 Score: 69
Period size: 25 Copynumber: 2.7 Consensus size: 24
72946515 ACTAATATTC
* * *
72946525 AGCTCGTATGAGCTTACCGTTTAT
1 AGCTCGTATGAGCATACCATTTAG
* * *
72946549 AGTTCTTAAGAGCATACCAATTTAG
1 AGCTCGTATGAGCATACC-ATTTAG
72946574 AGCTCGTATGAGCATAC
1 AGCTCGTATGAGCATAC
72946591 ATGTACAGGA
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
24 14 0.44
25 18 0.56
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (24 bp):
AGCTCGTATGAGCATACCATTTAG
Found at i:72947670 original size:30 final size:30
Alignment explanation
Indices: 72947636--72947693 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
72947626 AATCAATTTT
* * *
72947636 AAAGTCTAGGGGTAAAATGGTTATTTTGTG
1 AAAGTCTAGGGGCAAAATGATCATTTTGTG
72947666 AAAGTCTAGGGGCAAAATGATCATTTTG
1 AAAGTCTAGGGGCAAAATGATCATTTTG
72947694 CCCAATTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.33
Consensus pattern (30 bp):
AAAGTCTAGGGGCAAAATGATCATTTTGTG
Found at i:72948193 original size:48 final size:46
Alignment explanation
Indices: 72948031--72948197 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
72948021 TGATATGTGT
* **
72948031 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC-TACAGCACGGGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTCAG-ACAAGA
* *
72948077 GCAAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACAAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTCAGACAAGA
* * *
72948123 GCTAGTATAAGACATGTCTGGGACATGCATC-GACCTCTCAGTATACA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CAT-TCAG-ACA-AGA
*
72948171 GCTAGTGTAAGACTTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
72948198 GCGTCAACTT
Statistics
Matches: 104, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
45 1 0.01
46 68 0.65
47 6 0.06
48 28 0.27
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTCAGACAAGA
Found at i:72953982 original size:42 final size:42
Alignment explanation
Indices: 72953921--72954081 Score: 189
Period size: 42 Copynumber: 3.7 Consensus size: 42
72953911 TCTTTTTCTT
** *
72953921 GATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAAT-
1 GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACAT-ATC
* *
72953963 GATGCCATAGCCTAGCTATGGTCTTACACATGTTCACATATC
1 GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATATC
* *
72954005 GATGCCATAGCCCAGCTATGGTCTTATATGGATCACATATCACATATC
1 GATGCCATAGCCCAGCTATGGTCTTACA--CAT--C-T-TCACATATC
72954053 GATGCCATAGCCCAGCTATGGTCTTACAC
1 GATGCCATAGCCCAGCTATGGTCTTACAC
72954082 GAATCACATA
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
41 2 0.02
42 60 0.59
44 2 0.02
47 1 0.01
48 36 0.36
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (42 bp):
GATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATATC
Found at i:72954048 original size:48 final size:48
Alignment explanation
Indices: 72953996--72954093 Score: 169
Period size: 48 Copynumber: 2.0 Consensus size: 48
72953986 TTACACATGT
* * *
72953996 TCACATATCGATGCCATAGCCCAGCTATGGTCTTATATGGATCACATA
1 TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATA
72954044 TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATA
1 TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATA
72954092 TC
1 TC
72954094 TCACTGATGC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (48 bp):
TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATA
Found at i:72954233 original size:53 final size:53
Alignment explanation
Indices: 72954134--72954235 Score: 143
Period size: 53 Copynumber: 1.9 Consensus size: 53
72954124 ATATATCACA
* *
72954134 CCGATGACATATCCCAGATATGGTCTTATACGGAAGCAGATAATCACATCTCT
1 CCGATGACATAGCCCAGATATGGTCTTATACGGAAGCACATAATCACATCTCT
* * *
72954187 CCGATGCCATAGCCCAGCTATGGTCTTATACGGAAATCACAT-ATCACAT
1 CCGATGACATAGCCCAGATATGGTCTTATACGG-AAGCACATAATCACAT
72954236 GTTGCCATGG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
53 37 0.86
54 6 0.14
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (53 bp):
CCGATGACATAGCCCAGATATGGTCTTATACGGAAGCACATAATCACATCTCT
Found at i:72960242 original size:30 final size:30
Alignment explanation
Indices: 72960208--72960276 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
72960198 TACAATTTTG
* * *
72960208 TTTTATTTTTATTTTAATTCGGTCCTAATA
1 TTTTATATTTATTTCAATTCAGTCCTAATA
* *
72960238 TTTTATATTTGTTTCAATTTAGTCCTAATA
1 TTTTATATTTATTTCAATTCAGTCCTAATA
72960268 GTTATTATA
1 -TT-TTATA
72960277 ACTTATTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 25 0.78
31 2 0.06
32 5 0.16
ACGTcount: A:0.26, C:0.09, G:0.07, T:0.58
Consensus pattern (30 bp):
TTTTATATTTATTTCAATTCAGTCCTAATA
Found at i:72960699 original size:16 final size:18
Alignment explanation
Indices: 72960670--72960703 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
72960660 TCAATATATG
72960670 TTTTATTCATTATATTAT
1 TTTTATTCATTATATTAT
72960688 TTTTATT-A-TATATTAT
1 TTTTATTCATTATATTAT
72960704 ATTATATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 1 0.06
18 7 0.44
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTATTCATTATATTAT
Found at i:72960720 original size:21 final size:21
Alignment explanation
Indices: 72960678--72960728 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
72960668 TGTTTTATTC
* **
72960678 ATTATATTATTTTTATTATAT
1 ATTATATTATATACATTATAT
*
72960699 ATTATATTATATACATTTTAT
1 ATTATATTATATACATTATAT
72960720 ATATATATT
1 AT-TATATT
72960729 TTCTATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 19 0.76
22 6 0.24
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTATATTATATACATTATAT
Found at i:72960738 original size:13 final size:12
Alignment explanation
Indices: 72960679--72960738 Score: 59
Period size: 13 Copynumber: 4.7 Consensus size: 12
72960669 GTTTTATTCA
72960679 TTATAT-TATTT
1 TTATATATATTT
72960690 TTATTATATATTAT
1 TTA-TATATATT-T
*
72960704 ATTATATACATTT
1 -TTATATATATTT
72960717 TATATATATATTT
1 T-TATATATATTT
72960730 TCTATATAT
1 T-TATATAT
72960739 TACTTATCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
11 3 0.07
12 4 0.10
13 23 0.56
14 8 0.20
15 3 0.07
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATATATATTT
Found at i:72961629 original size:21 final size:21
Alignment explanation
Indices: 72961603--72961652 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
72961593 TTTCTGTTTG
72961603 TCTAAATACATAAAATATCCT
1 TCTAAATACATAAAATATCCT
*
72961624 TCTAAATACCTAAAATATCCT
1 TCTAAATACATAAAATATCCT
72961645 TCTAAATA
1 TCTAAATA
72961653 AGTTTTGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (21 bp):
TCTAAATACATAAAATATCCT
Found at i:72968594 original size:18 final size:19
Alignment explanation
Indices: 72968550--72968594 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
72968540 TTTAGAGGAA
*
72968550 TCTCAGGATTTTGAAGATG
1 TCTCAGGATTGTGAAGATG
72968569 TC-CAGGATTGTGAAG-TG
1 TCTCAGGATTGTGAAGATG
*
72968586 TCTCTGGAT
1 TCTCAGGAT
72968595 CTGTTTAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 4 0.17
18 17 0.74
19 2 0.09
ACGTcount: A:0.22, C:0.13, G:0.29, T:0.36
Consensus pattern (19 bp):
TCTCAGGATTGTGAAGATG
Found at i:72973280 original size:220 final size:220
Alignment explanation
Indices: 72972892--72973367 Score: 799
Period size: 220 Copynumber: 2.2 Consensus size: 220
72972882 CAGGCTAAAG
* * * * *
72972892 CATAGCAGATCTGACCTTCAGGTGTTTACGCTGAAGCAGATCCAAGATGATTTGGCATCTCCGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCCAAGATGATTTGGCATCTCCGTA
* * *
72972957 TTGTCAGAGAACAAATCAAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 TTGTCAGAGAACAAATCAAAGAAACAGATTCGGCATCTCCATATTCGACGGAGAGCAAATCGAAG
*
72973022 ACATAGTAGATCTAACCTTCGGATGTTTTCATATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGTAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
*
72973087 GCTATTACAAGGAGCAGATCGAAGA
196 GCTATTACAAGGAGCAAATCGAAGA
* *
72973112 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCCAAGATGATTTGGCATCTCCGTA
*
72973177 TTGTCAGAGAACAAATCGAAGAAACAGATTCGGCATCTCCATATTCGACGGAGAGCAAATCGAAG
66 TTGTCAGAGAACAAATCAAAGAAACAGATTCGGCATCTCCATATTCGACGGAGAGCAAATCGAAG
72973242 ACATAGTAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGTAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
72973307 GCTATTACAAGGAGCAAATCGAAGA
196 GCTATTACAAGGAGCAAATCGAAGA
* * * *
72973332 TATAGTAGATTTAGCTTTCACGTGTTTACGATGAAG
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAG
72973368 TAGATCGAAG
Statistics
Matches: 239, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
220 239 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (220 bp):
CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATCCAAGATGATTTGGCATCTCCGTA
TTGTCAGAGAACAAATCAAAGAAACAGATTCGGCATCTCCATATTCGACGGAGAGCAAATCGAAG
ACATAGTAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
GCTATTACAAGGAGCAAATCGAAGA
Found at i:72973458 original size:44 final size:43
Alignment explanation
Indices: 72973364--72973484 Score: 118
Period size: 44 Copynumber: 2.8 Consensus size: 43
72973354 TGTTTACGAT
* * * *
72973364 GAAGTAGATCGAAGATAGCAGATTTGGCGTTTCTGTATTGTAA
1 GAAGTAGATCGAAGATAGCAAATTTGGCATTCCTGTATTGCAA
* *
72973407 GAGAGTAGATCGAAGATAACAAATTTGGTATTCCTAAGT-TTGCAA
1 GA-AGTAGATCGAAGATAGCAAATTTGGCATTCCT--GTATTGCAA
* * * *
72973452 GAAGTAGGTTGAAGATAGCCAATTTGACATTCC
1 GAAGTAGATCGAAGATAGCAAATTTGGCATTCC
72973485 CAAAGCTATC
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
43 2 0.03
44 52 0.83
45 7 0.11
46 2 0.03
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.30
Consensus pattern (43 bp):
GAAGTAGATCGAAGATAGCAAATTTGGCATTCCTGTATTGCAA
Found at i:72974213 original size:10 final size:12
Alignment explanation
Indices: 72974188--72974212 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72974178 TTTTGGATAC
72974188 ATACGAAAATAT
1 ATACGAAAATAT
72974200 ATACGAAAATAT
1 ATACGAAAATAT
72974212 A
1 A
72974213 CAGATATTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (12 bp):
ATACGAAAATAT
Found at i:72974754 original size:30 final size:30
Alignment explanation
Indices: 72974720--72974779 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
72974710 TACAATTTTG
* * *
72974720 TTTTATTTTTATTTTAATTCGGTCCTAATA
1 TTTTATATTTATTTCAATTCAGTCCTAATA
* *
72974750 TTTTATATTTGTTTCAATTTAGTCCTAATA
1 TTTTATATTTATTTCAATTCAGTCCTAATA
72974780 GCTATTATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.10, G:0.07, T:0.58
Consensus pattern (30 bp):
TTTTATATTTATTTCAATTCAGTCCTAATA
Found at i:72975209 original size:16 final size:18
Alignment explanation
Indices: 72975180--72975213 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
72975170 TCAATATATG
72975180 TTTTATTCATTATATTAT
1 TTTTATTCATTATATTAT
72975198 TTTTATT-A-TATATTAT
1 TTTTATTCATTATATTAT
72975214 ATTATATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 1 0.06
18 7 0.44
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTATTCATTATATTAT
Found at i:72975217 original size:26 final size:27
Alignment explanation
Indices: 72975183--72975246 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 27
72975173 ATATATGTTT
* *
72975183 TATTCATTATATTA-TTTTTAT-TATA
1 TATTTATTATATTACATTTTATATATA
72975208 TATTATATTATA-TACATTTTATATATA
1 TATT-TATTATATTACATTTTATATATA
*
72975235 TATTTTTTATAT
1 TATTTATTATAT
72975247 ATTACTTATC
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
25 6 0.19
26 18 0.56
27 8 0.25
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (27 bp):
TATTTATTATATTACATTTTATATATA
Found at i:72975234 original size:15 final size:15
Alignment explanation
Indices: 72975210--72975248 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
72975200 TTATTATATA
72975210 TTATATTATATACATT
1 TTATA-TATATACATT
**
72975226 TTATATATATATTTT
1 TTATATATATACATT
72975241 TTATATAT
1 TTATATAT
72975249 TACTTATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTATATATATACATT
Found at i:72975277 original size:40 final size:38
Alignment explanation
Indices: 72975189--72975272 Score: 95
Period size: 38 Copynumber: 2.2 Consensus size: 38
72975179 GTTTTATTCA
*
72975189 TTATATTAT-TTTTATTATATATTATATTATATACATT
1 TTATATTATATTTTATTATATATTATATCATATACATT
*
72975226 TTATATATATATTTT-TTATATATTACTTATCATAT-C-GT
1 TTATAT-TATATTTTATTATATATTA--TATCATATACATT
72975264 TTATATTAT
1 TTATATTAT
72975273 TATATACTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
37 9 0.22
38 20 0.49
39 5 0.12
40 7 0.17
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (38 bp):
TTATATTATATTTTATTATATATTATATCATATACATT
Found at i:72981723 original size:39 final size:39
Alignment explanation
Indices: 72981642--72981804 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
72981632 TATGGTAACC
** *
72981642 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
72981682 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72981721 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72981760 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
72981799 CGCACA
1 CGCACA
72981805 TTCATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:72983859 original size:18 final size:18
Alignment explanation
Indices: 72983836--72983886 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
72983826 AATATAAATA
72983836 AATTAATTTAATTTTCCC
1 AATTAATTTAATTTTCCC
* *
72983854 AATTAAATT-ATTTTCTC
1 AATTAATTTAATTTTCCC
72983871 AATTCAATTATAATTT
1 AATT-AATT-TAATTT
72983887 CGTTAAAGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 11 0.41
18 11 0.41
19 1 0.04
20 4 0.15
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (18 bp):
AATTAATTTAATTTTCCC
Found at i:72986486 original size:40 final size:40
Alignment explanation
Indices: 72986442--72986624 Score: 219
Period size: 39 Copynumber: 4.7 Consensus size: 40
72986432 GTTCAAAACA
* * ***
72986442 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
72986482 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
** *
72986522 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
** *
72986561 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
72986600 CCTTCGGG-CTTAGCCCGGATATCAC
1 CCTTCGGGACTTAGCCCGGATATCAC
72986625 TCGAACATTC
Statistics
Matches: 133, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 93 0.70
40 40 0.30
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:72986554 original size:39 final size:39
Alignment explanation
Indices: 72986472--72986624 Score: 270
Period size: 39 Copynumber: 3.9 Consensus size: 39
72986462 TATGGTAACC
* * *
72986472 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
72986512 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
72986551 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
72986590 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
72986625 TCGAACATTC
Statistics
Matches: 110, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 93 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:72997288 original size:4 final size:4
Alignment explanation
Indices: 72997279--72997346 Score: 136
Period size: 4 Copynumber: 17.0 Consensus size: 4
72997269 AGTTTATGCA
72997279 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
72997327 TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG
72997347 CAGTCAAATG
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 64 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:72997727 original size:21 final size:21
Alignment explanation
Indices: 72997692--72997755 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
72997682 GTGAAGGGTA
* *
72997692 GCACACGGCCGTGTGATAG-AG
1 GCACACGACCATGTGA-AGCAG
*
72997713 GCACACGACTATGTGAAGCAG
1 GCACACGACCATGTGAAGCAG
* *
72997734 GGACACGACCATGTCAA-CAG
1 GCACACGACCATGTGAAGCAG
72997754 GC
1 GC
72997756 CGTGTAACTT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
20 6 0.17
21 29 0.83
ACGTcount: A:0.30, C:0.27, G:0.31, T:0.12
Consensus pattern (21 bp):
GCACACGACCATGTGAAGCAG
Found at i:72998431 original size:15 final size:14
Alignment explanation
Indices: 72998409--72998441 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
72998399 TAAAGATATG
72998409 AAAAAAAATTAAAT
1 AAAAAAAATTAAAT
72998423 AAAATAAAATTAAAT
1 AAAA-AAAATTAAAT
72998438 AAAA
1 AAAA
72998442 CACTAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAAAAAATTAAAT
Found at i:72999316 original size:11 final size:11
Alignment explanation
Indices: 72999300--72999325 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
72999290 CTCGTAACAA
72999300 TCTTAACTCAT
1 TCTTAACTCAT
72999311 TCTTAACTCAT
1 TCTTAACTCAT
72999322 TCTT
1 TCTT
72999326 GTTTTTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.27, G:0.00, T:0.50
Consensus pattern (11 bp):
TCTTAACTCAT
Found at i:72999473 original size:28 final size:29
Alignment explanation
Indices: 72999442--72999497 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
72999432 ACGAAATATT
*
72999442 GATAT-CATGGCCCGATGCCAAATCAGTC
1 GATATGCATGGCCCGAAGCCAAATCAGTC
*
72999470 GATATGCATGGCCTGAAGCCAAATCAGT
1 GATATGCATGGCCCGAAGCCAAATCAGT
72999498 TTATCTCGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.21
Consensus pattern (29 bp):
GATATGCATGGCCCGAAGCCAAATCAGTC
Found at i:73005646 original size:2 final size:2
Alignment explanation
Indices: 73005639--73005673 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
73005629 TCGATCGGAG
*
73005639 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73005674 GAGTACGCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:73005798 original size:29 final size:29
Alignment explanation
Indices: 73005766--73005838 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
73005756 CTTCGAGCTC
*
73005766 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
73005795 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
73005824 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
73005839 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:73013628 original size:2 final size:2
Alignment explanation
Indices: 73013621--73013651 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
73013611 TCGATCGGAG
*
73013621 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73013652 GAGTACGCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:73013776 original size:29 final size:29
Alignment explanation
Indices: 73013744--73013816 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
73013734 CTTCGAGCTC
*
73013744 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
73013773 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
73013802 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
73013817 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:73016529 original size:2 final size:2
Alignment explanation
Indices: 73016522--73016552 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
73016512 TCGATCGGAG
*
73016522 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73016553 GAGTACGCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:73016677 original size:29 final size:29
Alignment explanation
Indices: 73016645--73016717 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
73016635 CTTCGAGCTC
*
73016645 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
73016674 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
73016703 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
73016718 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:73024649 original size:29 final size:29
Alignment explanation
Indices: 73024617--73024689 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
73024607 CTTCGAGCTC
*
73024617 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
73024646 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
73024675 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
73024690 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:73028454 original size:95 final size:97
Alignment explanation
Indices: 73028211--73028480 Score: 266
Period size: 95 Copynumber: 2.8 Consensus size: 97
73028201 AGGTGCCAAC
* * * * * *
73028211 GCCATGTCCTGGACATGGTCTTACACTGGCTCACACA-TCAAAGTCGATGCCATGTCCCAGGCAT
1 GCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATTCGAGGTCGATGCCATGTCCCAGACAT
* * * * *
73028275 GGTCTTACACTGACTCTCTTGTATTGAGGCCGAT
66 GGTCTTACACTGAC-CAC-TATATTCAAGCCGAA
* * *
73028309 GCCATGTTCC-AGACATGGTTTTACATTGGCTCTCATCTATT-G-GTGCCGATGCCATGTCCCAG
1 GCCATG-TCCTAGACATGGTCTTACACTGGCTCTCA--TATTCGAG-GTCGATGCCATGTCCCAG
*
73028371 ACATGGTCTTACACTGA-CAC-ATA-TCAAGCTGAA
62 ACATGGTCTTACACTGACCACTATATTCAAGCCGAA
* * *
73028404 GCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATCTCGAGGTCGATGCCATGTCCTAGAGA
1 GCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAT-TCGAGGTCGATGCCATGTCCCAGACA
73028469 TGGTCTTACACT
65 TGGTCTTACACT
73028481 AGCTCTCATA
Statistics
Matches: 142, Mismatches: 21, Indels: 21
0.77 0.11 0.11
Matches are distributed among these distances:
93 3 0.02
94 4 0.03
95 65 0.46
96 3 0.02
98 29 0.20
99 3 0.02
100 34 0.24
101 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (97 bp):
GCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATTCGAGGTCGATGCCATGTCCCAGACAT
GGTCTTACACTGACCACTATATTCAAGCCGAA
Found at i:73028472 original size:145 final size:148
Alignment explanation
Indices: 73028202--73028489 Score: 345
Period size: 145 Copynumber: 2.0 Consensus size: 148
73028192 CATAGGGTAA
** * *
73028202 GGTGCCAACGCCATGTCCTGGACATGGTCTTACACTGGCTCACACATCAAAGTCGATGCCATGTC
1 GGTGCCAACGCCATGTCCCAGACATGGTCTTACACTGGCACACACATCAAAGTCGAAGCCATGTC
* * * * *
73028267 CCAGGCATGGTCTTACACTGACTCTCTTGTATTGAGGCCGATGCCATGTTCCAGACATGGTTTTA
66 CCAGACATGGTCTTACACTGACTCTCATATATCGAGGCCGATGCCATGTTCCAGACATGGTCTTA
* *
73028332 CATTGGCTCTCATCTATT
131 CACTAGCTCTCATCTATT
* * *
73028350 GGTGCCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATATC-AAG-CTGAAGCCATGT
1 GGTGCCAACGCCATGTCCCAGACATGGTCTTACACTGGCACACACATCAAAGTC-GAAGCCATGT
* * * *
73028411 CCTAGACATGGTCTTACACT-AGCTCTCATATCTCGAGGTCGATGCCATG-TCCTAGAGATGGTC
65 CCCAGACATGGTCTTACACTGA-CTCTCATATATCGAGGCCGATGCCATGTTCC-AGACATGGTC
73028474 TTACACTAGCTCTCAT
128 TTACACTAGCTCTCAT
73028490 ATCTCTATAG
Statistics
Matches: 119, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
144 5 0.04
145 74 0.62
146 7 0.06
147 1 0.01
148 32 0.27
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (148 bp):
GGTGCCAACGCCATGTCCCAGACATGGTCTTACACTGGCACACACATCAAAGTCGAAGCCATGTC
CCAGACATGGTCTTACACTGACTCTCATATATCGAGGCCGATGCCATGTTCCAGACATGGTCTTA
CACTAGCTCTCATCTATT
Found at i:73028494 original size:50 final size:48
Alignment explanation
Indices: 73028211--73028491 Score: 227
Period size: 50 Copynumber: 5.8 Consensus size: 48
73028201 AGGTGCCAAC
* * * * *
73028211 GCCATGTCCTGGACATGGTCTTACACTGGCTCACACA-TCAAAGTCGAT
1 GCCATGTCCTAGACATGGTCTTACACT-GCTCTCATATTCGAGGTCGAT
* * * *
73028259 GCCATGTCCCAGGCATGGTCTTACACTGACTCTCTTGTATT-GAGGCCGAT
1 GCCATGTCCTAGACATGGTCTTACACTG-CTCTC--ATATTCGAGGTCGAT
* * *
73028309 GCCATGTTCC-AGACATGGTTTTACATTGGCTCTCATCTATT-G-GTGCCGAT
1 GCCATG-TCCTAGACATGGTCTTACACT-GCTCTCA--TATTCGAG-GTCGAT
* * * * * *
73028359 GCCATGTCCCAGACATGGTCTTACACTG-ACACATA-TCAAGCT-GAA
1 GCCATGTCCTAGACATGGTCTTACACTGCTCTCATATTCGAGGTCGAT
73028404 GCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATCTCGAGGTCGAT
1 GCCATGTCCTAGACATGGTCTTACACT-GCTCTCATAT-TCGAGGTCGAT
*
73028454 GCCATGTCCTAGAGATGGTCTTACACTAGCTCTCATAT
1 GCCATGTCCTAGACATGGTCTTACACT-GCTCTCATAT
73028492 CTCTATAGCA
Statistics
Matches: 188, Mismatches: 28, Indels: 32
0.76 0.11 0.13
Matches are distributed among these distances:
45 29 0.15
46 3 0.02
47 7 0.04
48 31 0.16
49 10 0.05
50 103 0.55
51 5 0.03
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (48 bp):
GCCATGTCCTAGACATGGTCTTACACTGCTCTCATATTCGAGGTCGAT
Found at i:73030412 original size:11 final size:11
Alignment explanation
Indices: 73030375--73030411 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
73030365 TTTAACCTAT
*
73030375 TCAAAACATGA
1 TCAAAACATGC
73030386 TC-AAACATGC
1 TCAAAACATGC
73030396 TCAAAACATGC
1 TCAAAACATGC
73030407 -CAAAA
1 TCAAAA
73030412 ATATCATCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.51, C:0.24, G:0.08, T:0.16
Consensus pattern (11 bp):
TCAAAACATGC
Found at i:73036002 original size:29 final size:29
Alignment explanation
Indices: 73035969--73036033 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
73035959 GTGACGAGAT
73035969 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
73035998 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
73036027 CGGCACT
1 TGGCACT
73036034 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:73043971 original size:29 final size:29
Alignment explanation
Indices: 73043938--73044002 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
73043928 GTGACGAGAT
73043938 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
73043967 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
73043996 CGGCACT
1 TGGCACT
73044003 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:73044108 original size:2 final size:2
Alignment explanation
Indices: 73044103--73044133 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
73044093 GTGCGTACTC
*
73044103 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
73044134 CTCCGATCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:73048426 original size:40 final size:40
Alignment explanation
Indices: 73048341--73048491 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
73048331 ATTGAAATGA
* * *
73048341 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGATA-TAC
* * *
73048381 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT--ATAC
*
73048422 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATATAC
*
73048461 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
73048492 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 5 0.05
40 82 0.90
41 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATATAC
Found at i:73048440 original size:80 final size:80
Alignment explanation
Indices: 73048342--73048491 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
73048332 TTGAAATGAT
*
73048342 ATCCGGGCTAAATCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAATCCCGAAGAC-ATTCATGC-GAGAAATTATATCCGGGCTAAGACCCGAAGGCA
73048405 ATTGTGCTAGTGGCTAC
64 ATTGTGCTAGTGGCTAC
* * * * *
73048422 ATCCGGGCTAAGA-CCCGAAGGCATTCGTGCGAGATATTCTATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAA-ATCCCGAAGACATTCATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCAA
73048486 TTGTGC
65 TTGTGC
73048492 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 4 0.07
80 56 0.92
81 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAATCCCGAAGACATTCATGCGAGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCTAC
Found at i:73048505 original size:40 final size:40
Alignment explanation
Indices: 73048377--73048507 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
73048367 TATGCTGGAA
* * *
73048377 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * *
73048417 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TG
*
73048457 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
73048497 ATTATATCCGG
1 ATTATATCCGG
73048508 TTATATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:73054471 original size:12 final size:12
Alignment explanation
Indices: 73054454--73054492 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
73054444 CACGGTCTAG
*
73054454 CACGGCTTGGGA
1 CACGGCTTGGCA
73054466 CACGGCTTGGCA
1 CACGGCTTGGCA
*
73054478 CACCGCTTGGCA
1 CACGGCTTGGCA
73054490 CAC
1 CAC
73054493 AGGTGTGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.18, C:0.36, G:0.31, T:0.15
Consensus pattern (12 bp):
CACGGCTTGGCA
Done.