Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 242 of 335
Found at i:73433269 original size:32 final size:32
Alignment explanation
Indices: 73433226--73433292 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
73433216 TACTCAATTG
73433226 AATTTTCGTACATACCCGTACCATATCGTACC
1 AATTTTCGTACATACCCGTACCATATCGTACC
* * * *
73433258 AATTTTTGTACATACCTGTATCATCTCGTACC
1 AATTTTCGTACATACCCGTACCATATCGTACC
73433290 AAT
1 AAT
73433293 CTCATACTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.28, C:0.27, G:0.09, T:0.36
Consensus pattern (32 bp):
AATTTTCGTACATACCCGTACCATATCGTACC
Found at i:73433383 original size:28 final size:28
Alignment explanation
Indices: 73433342--73433553 Score: 135
Period size: 28 Copynumber: 7.6 Consensus size: 28
73433332 TCAATGTCTC
* *
73433342 GCACACT-AGATGCCATACCCGATACCTT
1 GCACACTAAG-TGCCATACTCGATACTTT
* * *
73433370 GCACACTAAGTGCCATTCTGGAT-GTTT
1 GCACACTAAGTGCCATACTCGATACTTT
* * *
73433397 CGCACA-TTAGATGACATACTCGATACCTT
1 -GCACACTAAG-TGCCATACTCGATACTTT
* * * * * **
73433426 ACACACTAAGTGTCGTTCTGGATGTTTT
1 GCACACTAAGTGCCATACTCGATACTTT
* *
73433454 GCACACT-AGATGCCATACCCGATACCTT
1 GCACACTAAG-TGCCATACTCGATACTTT
* * * **
73433482 GCACACTAAGTGCCGTTCTGGATGTTTT
1 GCACACTAAGTGCCATACTCGATACTTT
** *
73433510 GCACACTAAGTGCCACCCTCGCTACTTT
1 GCACACTAAGTGCCATACTCGATACTTT
73433538 GCACACTAAGTGCCAT
1 GCACACTAAGTGCCAT
73433554 TCTGGATGTA
Statistics
Matches: 133, Mismatches: 44, Indels: 14
0.70 0.23 0.07
Matches are distributed among these distances:
27 7 0.05
28 117 0.88
29 9 0.07
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (28 bp):
GCACACTAAGTGCCATACTCGATACTTT
Found at i:73433408 original size:56 final size:56
Alignment explanation
Indices: 73433335--73433562 Score: 307
Period size: 56 Copynumber: 4.1 Consensus size: 56
73433325 TGAATATTCA
*
73433335 ATGTCTCGCACACTAGATGCCATACCCGATACCTTGCACACTAAGTGCCATTCTGG
1 ATGTTTCGCACACTAGATGCCATACCCGATACCTTGCACACTAAGTGCCATTCTGG
* * * * * *
73433391 ATGTTTCGCACATTAGATGACATACTCGATACCTTACACACTAAGTGTCGTTCTGG
1 ATGTTTCGCACACTAGATGCCATACCCGATACCTTGCACACTAAGTGCCATTCTGG
* *
73433447 ATGTTTTGCACACTAGATGCCATACCCGATACCTTGCACACTAAGTGCCGTTCTGG
1 ATGTTTCGCACACTAGATGCCATACCCGATACCTTGCACACTAAGTGCCATTCTGG
* * * *
73433503 ATGTTTTGCACACTA-AGTGCCA-CCCTCGCTACTTTGCACACTAAGTGCCATTCTGG
1 ATGTTTCGCACACTAGA-TGCCATACC-CGATACCTTGCACACTAAGTGCCATTCTGG
73433559 ATGT
1 ATGT
73433563 ATCACACGTT
Statistics
Matches: 153, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
55 3 0.02
56 150 0.98
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (56 bp):
ATGTTTCGCACACTAGATGCCATACCCGATACCTTGCACACTAAGTGCCATTCTGG
Found at i:73433576 original size:56 final size:56
Alignment explanation
Indices: 73433342--73433608 Score: 294
Period size: 56 Copynumber: 4.8 Consensus size: 56
73433332 TCAATGTCTC
* *
73433342 GCACACTAGATGCCATACCCGATACCTTGCACACTAAGTGCCATTCTGGATGTTTC
1 GCACACTAGATGCCATCCCCGATACCTTGCACACTAAGTGCCATTCTGGATGTTTT
* * * * * * *
73433398 GCACATTAGATGACATACTCGATACCTTACACACTAAGTGTCGTTCTGGATGTTTT
1 GCACACTAGATGCCATCCCCGATACCTTGCACACTAAGTGCCATTCTGGATGTTTT
* *
73433454 GCACACTAGATGCCATACCCGATACCTTGCACACTAAGTGCCGTTCTGGATGTTTT
1 GCACACTAGATGCCATCCCCGATACCTTGCACACTAAGTGCCATTCTGGATGTTTT
* * *
73433510 GCACACTA-AGTGCCA-CCCTCGCTACTTTGCACACTAAGTGCCATTCTGGATG-TAT
1 GCACACTAGA-TGCCATCCC-CGATACCTTGCACACTAAGTGCCATTCTGGATGTTTT
**
73433565 -CACACGTTA-AGTGCCATCCCCGATA-CTTCGCACGTTAAGTGCCA
1 GCACAC--TAGA-TGCCATCCCCGATACCTT-GCACACTAAGTGCCA
73433609 CATATAAATA
Statistics
Matches: 184, Mismatches: 21, Indels: 12
0.85 0.10 0.06
Matches are distributed among these distances:
54 5 0.03
55 7 0.04
56 169 0.92
57 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (56 bp):
GCACACTAGATGCCATCCCCGATACCTTGCACACTAAGTGCCATTCTGGATGTTTT
Found at i:73436649 original size:26 final size:26
Alignment explanation
Indices: 73436620--73436730 Score: 91
Period size: 27 Copynumber: 4.2 Consensus size: 26
73436610 GGTCGTTAAG
*
73436620 ACCCTGGATTTTAAAGTTACTGAAAT
1 ACCCTGGATTTTAAAATTACTGAAAT
* *
73436646 ACCCTCGATTCATAAAATTACCT-AAAT
1 ACCCTGGATT-TTAAAATTA-CTGAAAT
*
73436673 ACCCTAGG-TTTGTAAAATTATTGAAAT
1 ACCCT-GGATTT-TAAAATTACTGAAAT
* * * *
73436700 ACCCTTGTAATGTAAAATTACCGAAAT
1 ACCC-TGGATTTTAAAATTACTGAAAT
73436727 ACCC
1 ACCC
73436731 CTATAAGGTA
Statistics
Matches: 67, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
26 10 0.15
27 52 0.78
28 5 0.07
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (26 bp):
ACCCTGGATTTTAAAATTACTGAAAT
Found at i:73436741 original size:27 final size:27
Alignment explanation
Indices: 73436684--73436743 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
73436674 CCCTAGGTTT
** * * *
73436684 GTAAAATTATTGAAATACCCTTGTAAT
1 GTAAAATTACCGAAATACCCCTATAAG
73436711 GTAAAATTACCGAAATACCCCTATAAG
1 GTAAAATTACCGAAATACCCCTATAAG
73436738 GTAAAA
1 GTAAAA
73436744 GGACTATTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCCTATAAG
Found at i:73437238 original size:28 final size:28
Alignment explanation
Indices: 73437193--73437254 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
73437183 ATTACACTGT
* * * *
73437193 ACTGATACTGTTTTGGGCTTAGGCCCAC
1 ACTGTTACTGTATAGGGCTAAGGCCCAC
*
73437221 ACTGTTACTGTATAGGGCTAAGGCCCAG
1 ACTGTTACTGTATAGGGCTAAGGCCCAC
73437249 ACTGTT
1 ACTGTT
73437255 TTGCATATTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.31
Consensus pattern (28 bp):
ACTGTTACTGTATAGGGCTAAGGCCCAC
Found at i:73437673 original size:27 final size:27
Alignment explanation
Indices: 73437642--73437814 Score: 256
Period size: 27 Copynumber: 6.4 Consensus size: 27
73437632 CCCCAAAATA
* *
73437642 GGTAAAATGATCATAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
73437669 GGTAAAATGACCATAATGCCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
73437696 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
73437723 GGTAAAATGACTGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
73437750 AGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
73437777 GGTAAAATGATCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
73437804 GGTAAAATGAC
1 GGTAAAATGAC
73437815 AATTATGCCA
Statistics
Matches: 131, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:73442940 original size:11 final size:11
Alignment explanation
Indices: 73442924--73442954 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
73442914 TTATGATATG
73442924 ATTTCGTGAAA
1 ATTTCGTGAAA
73442935 ATTTCGTGAAA
1 ATTTCGTGAAA
73442946 ATTTCGTGA
1 ATTTCGTGA
73442955 TGAAATTCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (11 bp):
ATTTCGTGAAA
Found at i:73456383 original size:18 final size:18
Alignment explanation
Indices: 73456350--73456384 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73456340 AGGATTGCAA
*
73456350 ATTTCCATTTTAATTTTC
1 ATTTCCATTTCAATTTTC
*
73456368 ATTTCCATTTCCATTTT
1 ATTTCCATTTCAATTTT
73456385 TGGAAACCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTCCATTTCAATTTTC
Found at i:73468108 original size:34 final size:33
Alignment explanation
Indices: 73468061--73468125 Score: 78
Period size: 34 Copynumber: 1.9 Consensus size: 33
73468051 ATTTTAGCTA
* *
73468061 GGGCCTTAGCCCAT-TACAGTATCAGTATCAGTGT
1 GGGCCTAAGCCCATCT-CAGTAACAGTA-CAGTGT
*
73468095 GGGCCTAATCCCATCTCAGTAACAGTACAGT
1 GGGCCTAAGCCCATCTCAGTAACAGTACAGT
73468126 ACATATATGC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 4 0.15
34 22 0.81
35 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (33 bp):
GGGCCTAAGCCCATCTCAGTAACAGTACAGTGT
Found at i:73469013 original size:3 final size:3
Alignment explanation
Indices: 73469005--73469030 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
73468995 AATTTGGATG
73469005 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
73469031 TCGTATGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:73471227 original size:27 final size:26
Alignment explanation
Indices: 73471169--73471270 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
73471159 CTAGTAGCTA
* *
73471169 TGCCACAAATATCTGTTTCTGGTGGCTA
1 TGCCAC-AATATCTG-TTCTGGTGACTC
73471197 TGCCACGAATATCTGTTCTGGTGACTC
1 TGCCAC-AATATCTGTTCTGGTGACTC
*
73471224 TGCCACAATATCTATATCTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGACTC
*
73471251 TGTCACAATATCTGTTCTGG
1 TGCCACAATATCTGTTCTGG
73471271 CAGCCATGCT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 13 0.19
27 40 0.60
28 14 0.21
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:73475888 original size:42 final size:43
Alignment explanation
Indices: 73475769--73475909 Score: 105
Period size: 43 Copynumber: 3.3 Consensus size: 43
73475759 CATAGGACTC
* * **
73475769 CGATATGTGATTTTGTGTAAGACCACATCT-GGG-ATGTTGGCAT
1 CGATATATGATTTTGAGTAAGACCATGTCTGGGGCA-G-TGGCAT
* * *
73475812 CGATTTGA-GATTTACGTGTAAGACCATGTCTGGGGCA-TCGGCAT
1 CGATAT-ATGATTT-TGAGTAAGACCATGTCTGGGGCAGT-GGCAT
*
73475856 CG-TATATGATTTTGAGTAAGACCCT-TCTTGGGGCAGTGGCAT
1 CGATATATGATTTTGAGTAAGACCATGTC-TGGGGCAGTGGCAT
*
73475898 CGATATTTGATT
1 CGATATATGATT
73475910 ACATGTAAGA
Statistics
Matches: 79, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
41 2 0.03
42 25 0.32
43 27 0.34
44 21 0.27
45 3 0.04
46 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.34
Consensus pattern (43 bp):
CGATATATGATTTTGAGTAAGACCATGTCTGGGGCAGTGGCAT
Found at i:73478338 original size:43 final size:43
Alignment explanation
Indices: 73478277--73478378 Score: 177
Period size: 43 Copynumber: 2.4 Consensus size: 43
73478267 AATGAACTCA
73478277 CACACTTAGTGCCAATTAATTAGCTGAAACTATAATTGTAACG
1 CACACTTAGTGCCAATTAATTAGCTGAAACTATAATTGTAACG
** *
73478320 CACACTTAGTGCCAATTAATTAGCTGAGGCTATAATTGTATCG
1 CACACTTAGTGCCAATTAATTAGCTGAAACTATAATTGTAACG
73478363 CACACTTAGTGCCAAT
1 CACACTTAGTGCCAAT
73478379 ACATTAAACC
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (43 bp):
CACACTTAGTGCCAATTAATTAGCTGAAACTATAATTGTAACG
Found at i:73483290 original size:40 final size:40
Alignment explanation
Indices: 73483235--73483444 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
73483225 AACATTGGAA
73483235 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73483275 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73483315 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
73483355 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
73483394 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
73483435 CTATATCCGG
1 ATATATCCGG
73483445 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:73487636 original size:39 final size:40
Alignment explanation
Indices: 73487578--73487678 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
73487568 AAATTGAATG
*
73487578 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAATT
* * * * *
73487617 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAATT
*
73487657 AAATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
73487679 GCATTTGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAATT
Found at i:73487671 original size:40 final size:39
Alignment explanation
Indices: 73487580--73487688 Score: 137
Period size: 40 Copynumber: 2.8 Consensus size: 39
73487570 ATTGAATGAT
* * * *
73487580 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGAAATTAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAAATTAA
* * *
73487619 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCT-GAAATTAA
*
73487659 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
73487689 AAATCGTGAT
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 27 0.45
40 33 0.55
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAAATTAA
Found at i:73487703 original size:40 final size:39
Alignment explanation
Indices: 73487576--73487719 Score: 125
Period size: 40 Copynumber: 3.7 Consensus size: 39
73487566 AGAAATTGAA
* *
73487576 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * *
73487616 T-ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
73487655 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
73487695 TGATATCCGGG-TAAGTCCCGTAGGC
1 TGATATCCGGGCTAAGACCCGAAGGC
73487720 CTTGGTGCGG
Statistics
Matches: 84, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
36 2 0.02
37 4 0.05
38 2 0.02
39 34 0.40
40 42 0.50
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:73490073 original size:17 final size:17
Alignment explanation
Indices: 73490051--73490112 Score: 65
Period size: 17 Copynumber: 3.7 Consensus size: 17
73490041 CGGTAACAGA
73490051 AACAGAATACCAATAGG
1 AACAGAATACCAATAGG
* **
73490068 AACAGAATACTAAGCGG
1 AACAGAATACCAATAGG
*
73490085 ATCA-ACA-ACCAATAGG
1 AACAGA-ATACCAATAGG
73490101 AACAGAATACCA
1 AACAGAATACCA
73490113 GCATCACACA
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
16 11 0.32
17 23 0.68
ACGTcount: A:0.52, C:0.21, G:0.16, T:0.11
Consensus pattern (17 bp):
AACAGAATACCAATAGG
Found at i:73491498 original size:27 final size:27
Alignment explanation
Indices: 73491444--73491501 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
73491434 AGCATGGCTG
* *
73491444 CCAG-TACAGATATTGTGATAGAGACA
1 CCAGATACAGATATTGTGACAAAGACA
* *
73491470 CCAGATACAGATATTGTGGCAAAGCCA
1 CCAGATACAGATATTGTGACAAAGACA
73491497 CCAGA
1 CCAGA
73491502 ACGCTTCCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (27 bp):
CCAGATACAGATATTGTGACAAAGACA
Found at i:73491700 original size:43 final size:43
Alignment explanation
Indices: 73491639--73491724 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
73491629 CACCTAGGGG
73491639 TATAATGGTAATTTTCATACTTAGGGGTATTTTAGTAAATTTA
1 TATAATGGTAATTTTCATACTTAGGGGTATTTTAGTAAATTTA
73491682 TATAATGGTAATTTTCATACTTAGGGGTATTTTAGTAAATTTA
1 TATAATGGTAATTTTCATACTTAGGGGTATTTTAGTAAATTTA
73491725 CTATTTTAGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.47
Consensus pattern (43 bp):
TATAATGGTAATTTTCATACTTAGGGGTATTTTAGTAAATTTA
Found at i:73491974 original size:8 final size:8
Alignment explanation
Indices: 73491958--73491989 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
73491948 CACAAAATGC
73491958 CGGCTTTT
1 CGGCTTTT
*
73491966 CGGCATTT
1 CGGCTTTT
73491974 CGGCTTTT
1 CGGCTTTT
73491982 CGGCTTTT
1 CGGCTTTT
73491990 GCCAATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:73498606 original size:58 final size:57
Alignment explanation
Indices: 73498552--73498673 Score: 174
Period size: 58 Copynumber: 2.1 Consensus size: 57
73498542 CCGCACACAC
* * *
73498552 AGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCAT-GCACACTCAGTGCCATAT-TTTCCAGCATGCACACTT
* *
73498610 AGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTCCAGCATGCACACTT
1 AGTGCCATACACTTCCAGCATGCACACTCAGTGCCATATTTTCCAGCATGCACACTT
73498667 AGTGCCA
1 AGTGCCA
73498674 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
57 25 0.43
58 32 0.55
59 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (57 bp):
AGTGCCATACACTTCCAGCATGCACACTCAGTGCCATATTTTCCAGCATGCACACTT
Found at i:73498661 original size:28 final size:29
Alignment explanation
Indices: 73498573--73498673 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
73498563 CTTCGAGCTC
73498573 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
73498602 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
*
73498631 GCACACTCAGTGCCATAT-TTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
73498659 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
73498674 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
28 24 0.34
29 46 0.66
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:73509480 original size:23 final size:24
Alignment explanation
Indices: 73509450--73509495 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
73509440 AGAACTTTTA
* *
73509450 ATCAGGAA-GCTCACGAAGAGCCT
1 ATCAGGAATACTCACAAAGAGCCT
73509473 ATCAGGAATACTCACAAAGAGCC
1 ATCAGGAATACTCACAAAGAGCC
73509496 ATGTAACAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.39, C:0.26, G:0.22, T:0.13
Consensus pattern (24 bp):
ATCAGGAATACTCACAAAGAGCCT
Found at i:73509727 original size:25 final size:24
Alignment explanation
Indices: 73509699--73509754 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 24
73509689 TACCAATCAA
73509699 GATGCTCGCAAGA-ACTATATAACAG
1 GATGCTC-CAAGAGACT-TATAACAG
*
73509724 GATGCT-CAAGAGGCTTATAACAG
1 GATGCTCCAAGAGACTTATAACAG
73509747 GATTGCTC
1 GA-TGCTC
73509755 ATCCGATCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 15 0.56
24 6 0.22
25 6 0.22
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (24 bp):
GATGCTCCAAGAGACTTATAACAG
Found at i:73516787 original size:28 final size:27
Alignment explanation
Indices: 73516724--73516793 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
73516714 ATAGTGAGTC
73516724 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
73516751 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
*
73516779 CGTACACTTAGTGCT
1 CGCACACTTAGTGCT
73516794 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:73524670 original size:28 final size:27
Alignment explanation
Indices: 73524607--73524676 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
73524597 ATAGTGAGTC
73524607 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
73524634 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
73524662 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73524677 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:73527095 original size:44 final size:44
Alignment explanation
Indices: 73527046--73527137 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
73527036 TGTTTATGGA
* * *
73527046 TACTTCGACCTT-GAGTCGATGAGGCACTATAAGTGTCGTACTGC
1 TACTTCGA-CTTCAAGTCAATGAGGCACCATAAGTGTCGTACTGC
** *
73527090 TACTTCGACTTCAAGTCAATGAGGCACCATGTGTGTCGTACTGT
1 TACTTCGACTTCAAGTCAATGAGGCACCATAAGTGTCGTACTGC
73527134 TACT
1 TACT
73527138 GTTACTTAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 3 0.07
44 38 0.93
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (44 bp):
TACTTCGACTTCAAGTCAATGAGGCACCATAAGTGTCGTACTGC
Found at i:73528674 original size:40 final size:40
Alignment explanation
Indices: 73528595--73528776 Score: 233
Period size: 40 Copynumber: 4.6 Consensus size: 40
73528585 AACCCAAGTA
* * * **
73528595 CCTTCGGGATTTAG-CCAGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCATGAATG
*
73528634 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATGAATG
73528674 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATGAATG
* ** * **
73528714 CCTTTGGGACTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATGAATG
73528754 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
73528777 CATCCGAATA
Statistics
Matches: 127, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 12 0.09
40 114 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATGAATG
Found at i:73533390 original size:17 final size:18
Alignment explanation
Indices: 73533368--73533408 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
73533358 ATGCGAGTGA
73533368 GAGGAATG-TTGAGAAAT
1 GAGGAATGATTGAGAAAT
*
73533385 GAGGAATGATTTGAGAAGT
1 GAGGAATGA-TTGAGAAAT
73533404 GAGGA
1 GAGGA
73533409 TGGCAAGGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.38
19 13 0.62
ACGTcount: A:0.39, C:0.00, G:0.39, T:0.22
Consensus pattern (18 bp):
GAGGAATGATTGAGAAAT
Found at i:73536519 original size:40 final size:40
Alignment explanation
Indices: 73536464--73536667 Score: 304
Period size: 40 Copynumber: 5.1 Consensus size: 40
73536454 CGGATGATAA
* * * *
73536464 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
73536504 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
73536544 CTGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73536584 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
73536624 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
73536664 CCGG
1 CCGG
73536668 CAAAATCTCG
Statistics
Matches: 151, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 148 0.98
41 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:73540344 original size:37 final size:37
Alignment explanation
Indices: 73540274--73540482 Score: 233
Period size: 37 Copynumber: 5.7 Consensus size: 37
73540264 AGTACACAAA
* * *
73540274 TAATCCAACCGA-AACATGCC-AATCGCTCGTAAGAGC
1 TAATCCATCCGATAACACGCCAAAT-GCTCATAAGAGC
* * * * *
73540310 TAATCCAACCTATAACAGGCCAAATGTTCATAAGAAC
1 TAATCCATCCGATAACACGCCAAATGCTCATAAGAGC
* ** *
73540347 TAATCCACCCGATAACATTCTAAATGCTCATAAGAGC
1 TAATCCATCCGATAACACGCCAAATGCTCATAAGAGC
* * *
73540384 TAATCCATCCAATAATACGCCAAATACTCATAAGAGC
1 TAATCCATCCGATAACACGCCAAATGCTCATAAGAGC
*
73540421 TAATCCATCCGATAACACACCAAATGCTCATAAGAGC
1 TAATCCATCCGATAACACGCCAAATGCTCATAAGAGC
* *
73540458 TAATCCATTCGATAACATGCCAAAT
1 TAATCCATCCGATAACACGCCAAAT
73540483 CAGGGAGTAT
Statistics
Matches: 145, Mismatches: 26, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
36 11 0.08
37 131 0.90
38 3 0.02
ACGTcount: A:0.40, C:0.27, G:0.11, T:0.22
Consensus pattern (37 bp):
TAATCCATCCGATAACACGCCAAATGCTCATAAGAGC
Found at i:73547128 original size:28 final size:28
Alignment explanation
Indices: 73547092--73547145 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
73547082 CTCTCTTGTC
* * *
73547092 CATTTTATATTTCTTTTAGTTTTATATT
1 CATTCTATACTTCTTTTAATTTTATATT
73547120 CATTCTATACTTCTTTTAATTTTATA
1 CATTCTATACTTCTTTTAATTTTATA
73547146 ACACGTTATC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.11, G:0.02, T:0.63
Consensus pattern (28 bp):
CATTCTATACTTCTTTTAATTTTATATT
Found at i:73552535 original size:19 final size:19
Alignment explanation
Indices: 73552511--73552548 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
73552501 AAATTGAACC
73552511 ATCATTAGACAAAGTCAAT
1 ATCATTAGACAAAGTCAAT
73552530 ATCATTAGACAAAGTCAAT
1 ATCATTAGACAAAGTCAAT
73552549 CTCGTACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
ATCATTAGACAAAGTCAAT
Found at i:73557543 original size:39 final size:39
Alignment explanation
Indices: 73557489--73557601 Score: 172
Period size: 39 Copynumber: 2.9 Consensus size: 39
73557479 AACGTTCGAG
73557489 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCCA
***
73557528 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCCA
* *
73557567 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
73557602 GGTTACCATA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 51 0.75
40 17 0.25
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCCA
Found at i:73557643 original size:79 final size:78
Alignment explanation
Indices: 73557487--73557669 Score: 174
Period size: 79 Copynumber: 2.3 Consensus size: 78
73557477 TGAACGTTCG
* ** *
73557487 AGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCCATGATATCCGGGCTAAGCCCGAAGG
1 AGTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGCCACCATATACGGGCTAAGCCCGAAGG
**
73557552 CAATTGTGCGAGT
66 CAATTGAACGAGT
* * * ** *
73557565 TGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATA-ACGGGCTATGTCCCGAA
1 AGTGATATCCGGGTTAAG-CCCGAAGGCAATTGTGCGAGCCACCATATACGGGCTAAG-CCCGAA
**
73557629 GGCGTTTGAACGAGT
64 GGCAATTGAACGAGT
*
73557644 AGCT-ATATCC-GGTTAAACTCCGAAGG
1 AG-TGATATCCGGGTTAAGC-CCGAAGG
73557670 TATGTGATTC
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
77 1 0.01
78 37 0.44
79 46 0.54
80 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.23
Consensus pattern (78 bp):
AGTGATATCCGGGTTAAGCCCGAAGGCAATTGTGCGAGCCACCATATACGGGCTAAGCCCGAAGG
CAATTGAACGAGT
Found at i:73565622 original size:40 final size:39
Alignment explanation
Indices: 73565511--73565624 Score: 165
Period size: 39 Copynumber: 2.9 Consensus size: 39
73565501 GAATGTTCGA
*
73565511 GTGATATCCGGGCTAAGCCCGAAGGAAATTGTGCGAGCC
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCC
* **
73565550 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCC
* *
73565589 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
73565625 GGTTACCATA
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
39 50 0.75
40 17 0.25
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCC
Found at i:73569276 original size:49 final size:49
Alignment explanation
Indices: 73569110--73569347 Score: 305
Period size: 49 Copynumber: 4.8 Consensus size: 49
73569100 GTGAGGTGCA
* * ** * * *
73569110 TGTGTAGTACTAAGTGCAGACTACTATGCATACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* **
73569161 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
73569211 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
73569260 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
73569309 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
73569348 GCTTTGGCTA
Statistics
Matches: 166, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 89 0.54
50 46 0.28
51 31 0.19
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:73569283 original size:99 final size:100
Alignment explanation
Indices: 73569108--73569347 Score: 331
Period size: 99 Copynumber: 2.4 Consensus size: 100
73569098 TTGTGAGGTG
* * * *
73569108 CATGTGTAGTACTAAGTGCAGACTACTATGCATACCCGAAAACTGTGATCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAGTACTA
* **
73569173 AGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA
66 AGTGCAGGCTACTACGTGTACCAGATAATT-GGTCA
* * * *
73569209 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAGTACTA
* *
73569272 AGTGCAGGCTACTACGTGTACCGGATAATTGGTCG
66 AGTGCAGGCTACTACGTGTACCAGATAATTGGTCA
*
73569307 CATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
73569348 GCTTTGGCTA
Statistics
Matches: 122, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 41 0.34
99 45 0.37
100 1 0.01
101 35 0.29
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (100 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAGTACTA
AGTGCAGGCTACTACGTGTACCAGATAATTGGTCA
Found at i:73576443 original size:39 final size:39
Alignment explanation
Indices: 73576389--73576501 Score: 172
Period size: 39 Copynumber: 2.9 Consensus size: 39
73576379 AATGTTCGAG
73576389 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCCA
***
73576428 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCCA
* *
73576467 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
73576502 GGTTACCATA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 51 0.75
40 17 0.25
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCCA
Found at i:73576517 original size:40 final size:40
Alignment explanation
Indices: 73576395--73576530 Score: 134
Period size: 39 Copynumber: 3.5 Consensus size: 40
73576385 CGAGTGATAT
** ** *
73576395 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCCATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*** *
73576434 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
73576473 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
73576513 CCGGGCTATGT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73576531 TGTTTGAACG
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 52 0.62
40 32 0.38
ACGTcount: A:0.23, C:0.24, G:0.32, T:0.21
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:73587381 original size:40 final size:39
Alignment explanation
Indices: 73587253--73587395 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
73587243 AATGTTCGAG
*
73587253 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
73587292 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
73587331 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
73587371 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
73587396 TGTTTTGAAC
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 52 0.57
40 40 0.43
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:73591016 original size:49 final size:49
Alignment explanation
Indices: 73590850--73591087 Score: 305
Period size: 49 Copynumber: 4.8 Consensus size: 49
73590840 TGAGGTTGCA
* * ** * * *
73590850 TGTGTAGTACTAAGTGCAGACTACTATGCATACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* **
73590901 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
73590951 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
73591000 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
73591049 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
73591088 GCTTTGGCTA
Statistics
Matches: 166, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 89 0.54
50 46 0.28
51 31 0.19
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:73591023 original size:99 final size:100
Alignment explanation
Indices: 73590848--73591087 Score: 331
Period size: 99 Copynumber: 2.4 Consensus size: 100
73590838 TGTGAGGTTG
* * * *
73590848 CATGTGTAGTACTAAGTGCAGACTACTATGCATACCCGAAAACTGTGATCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAGTACTA
* **
73590913 AGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA
66 AGTGCAGGCTACTACGTGTACCAGATAATT-GGTCA
* * * *
73590949 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAGTACTA
* *
73591012 AGTGCAGGCTACTACGTGTACCGGATAATTGGTCG
66 AGTGCAGGCTACTACGTGTACCAGATAATTGGTCA
*
73591047 CATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
73591088 GCTTTGGCTA
Statistics
Matches: 122, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 41 0.34
99 45 0.37
100 1 0.01
101 35 0.29
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (100 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAGTACTA
AGTGCAGGCTACTACGTGTACCAGATAATTGGTCA
Found at i:73593686 original size:40 final size:40
Alignment explanation
Indices: 73593631--73593722 Score: 139
Period size: 40 Copynumber: 2.3 Consensus size: 40
73593621 ATTCGTACAA
*
73593631 GGCACTTAGTGTGTGATTTGACATAGCTTCGGCTATAGAT
1 GGCACTTAGTGTGTGATTTGACATAGCTTCAGCTATAGAT
* * *
73593671 GGCACTTAGTGTGTGATTTGAGATAGCTTCATCTATATAT
1 GGCACTTAGTGTGTGATTTGACATAGCTTCAGCTATAGAT
*
73593711 GACACTTAGTGT
1 GGCACTTAGTGT
73593723 ACAAGATATC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (40 bp):
GGCACTTAGTGTGTGATTTGACATAGCTTCAGCTATAGAT
Found at i:73599276 original size:47 final size:46
Alignment explanation
Indices: 73599222--73599416 Score: 175
Period size: 47 Copynumber: 4.1 Consensus size: 46
73599212 TTAGGATTTT
*
73599222 ATGTGATGAATGTGA-ATGTATATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGACATG-ATATATGTG-GATAAGGCCGAATGGCCA
*
73599269 ATGTGATGAATGTGAGCATG-CATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGA-CATGATATATGTG-GATAAGGCCGAATGGCCA
* * *
73599316 ATGTGGTGAATGTGAACATGCATATATGTGG-TAAAGCCGAATGGCTA
1 ATGTGATGAATGTG-ACATG-ATATATGTGGATAAGGCCGAATGGCCA
* * * * *
73599363 ATGTGAAATATGTATGAGATATG-TATATGTGG-TAAAGCCGAATGGCTA
1 ATGTG----ATGAATGTGACATGATATATGTGGATAAGGCCGAATGGCCA
73599411 ATGTGA
1 ATGTGA
73599417 AATATGTATG
Statistics
Matches: 128, Mismatches: 11, Indels: 21
0.80 0.07 0.13
Matches are distributed among these distances:
44 1 0.01
47 75 0.59
48 32 0.25
49 10 0.08
50 4 0.03
51 6 0.05
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (46 bp):
ATGTGATGAATGTGACATGATATATGTGGATAAGGCCGAATGGCCA
Found at i:73599324 original size:25 final size:25
Alignment explanation
Indices: 73599251--73599324 Score: 59
Period size: 23 Copynumber: 3.1 Consensus size: 25
73599241 ATATATATGA
*
73599251 GATAAGGCCGAATGGCCAATGTGAT
1 GATAAGGCCGAATGGCCAATGTGGT
* * *
73599276 GA-ATGTG-AGCAT-G-CATATGT-GT
1 GATAAG-GCCGAATGGCCA-ATGTGGT
73599298 GATAAGGCCGAATGGCCAATGTGGT
1 GATAAGGCCGAATGGCCAATGTGGT
73599323 GA
1 GA
73599325 ATGTGAACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 14
0.62 0.12 0.25
Matches are distributed among these distances:
22 6 0.17
23 10 0.29
24 10 0.29
25 9 0.26
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.23
Consensus pattern (25 bp):
GATAAGGCCGAATGGCCAATGTGGT
Found at i:73599401 original size:48 final size:48
Alignment explanation
Indices: 73599338--73599472 Score: 261
Period size: 48 Copynumber: 2.8 Consensus size: 48
73599328 TGAACATGCA
73599338 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
73599386 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
73599434 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
73599473 GGCGATGTGC
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:73599727 original size:37 final size:37
Alignment explanation
Indices: 73599619--73599733 Score: 176
Period size: 37 Copynumber: 3.1 Consensus size: 37
73599609 GGAAATATAT
* *
73599619 TCTGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
73599656 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
73599693 TCTGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
73599730 TCTG
1 TCTG
73599734 AGCTAAAGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (37 bp):
TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:73601315 original size:40 final size:40
Alignment explanation
Indices: 73600994--73601303 Score: 484
Period size: 40 Copynumber: 7.8 Consensus size: 40
73600984 GAGAATTGAG
*
73600994 AGTGATATATCCAGG-CTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCC-GGACTAAGTCCCGAAGAGCATTCGTGCT
*
73601034 AGTGATGTATCCAGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
73601074 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
73601114 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
73601154 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
73601194 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
73601233 AGTGATATATCCGTG-CTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCG-GACTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
73601272 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
73601304 ATCATGCTGG
Statistics
Matches: 255, Mismatches: 10, Indels: 10
0.93 0.04 0.04
Matches are distributed among these distances:
38 1 0.00
39 67 0.26
40 187 0.73
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:73605225 original size:47 final size:48
Alignment explanation
Indices: 73605167--73605360 Score: 222
Period size: 47 Copynumber: 4.1 Consensus size: 48
73605157 TTAGGATTTT
* *
73605167 ATGTGATGAATGTGA-ATGTATATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGACATGTACATATATGTGATAAGGCCGAATGGCCA
*
73605214 ATGCGATGAATGTGAACATG--CATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTG-ACATGTACATATATGTGATAAGGCCGAATGGCCA
* *
73605261 ATGTGATAAATGTGAGCATG--CATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGA-CATGTACATATATGTGATAAGGCCGAATGGCCA
* * * * *
73605308 ATGTGGTGAATGTGAACATG--CATATATATGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTG-ACATGTACATATATGTGATAAGGCCGAATGGCCA
73605355 ATGTGA
1 ATGTGA
73605361 AATATGTATG
Statistics
Matches: 129, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
46 1 0.01
47 123 0.95
48 2 0.02
49 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (48 bp):
ATGTGATGAATGTGACATGTACATATATGTGATAAGGCCGAATGGCCA
Found at i:73605265 original size:94 final size:93
Alignment explanation
Indices: 73605188--73605360 Score: 265
Period size: 94 Copynumber: 1.8 Consensus size: 93
73605178 GTGAATGTAT
* *
73605188 ATATATGAGATAAGGCCGAATGGCCAATGCGATGAATGTGAACATGCATATATGTGATAAGGCCG
1 ATATATGAGATAAGGCCGAATGGCCAATGCGATGAATGTGAACATGCATATATATGATAAAGCCG
73605253 AATGGCCAATGTGATAAATGTGAGCATGC
66 AATGGCCAATGTGATAAATGTGA-CATGC
* * * * *
73605282 ATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATGTGAACATGCATATATATGGTAAAGCCG
1 ATATATGAGATAAGGCCGAATGGCCAATGCGATGAATGTGAACATGCATATATATGATAAAGCCG
*
73605347 AATGGCTAATGTGA
66 AATGGCCAATGTGA
73605361 AATATGTATG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 71 1.00
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (93 bp):
ATATATGAGATAAGGCCGAATGGCCAATGCGATGAATGTGAACATGCATATATATGATAAAGCCG
AATGGCCAATGTGATAAATGTGACATGC
Found at i:73605394 original size:48 final size:48
Alignment explanation
Indices: 73605330--73605512 Score: 330
Period size: 48 Copynumber: 3.8 Consensus size: 48
73605320 TGAACATGCA
*
73605330 TATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
73605378 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
73605426 TATATGTGGTAAAGTCGAATGGCTAATGTGAAATGTGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
73605474 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
73605513 GGCGATGTGC
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 129 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:73605951 original size:37 final size:37
Alignment explanation
Indices: 73605659--73605950 Score: 505
Period size: 37 Copynumber: 7.9 Consensus size: 37
73605649 GGAAATATAT
*
73605659 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
73605696 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73605733 TCCGGGTAAGACCCGATGACTACGTGTGGTGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
73605770 TCCGGGTAAGACCCGATGACTACTTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
73605807 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
73605844 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
73605881 TCCGGGTAAGA-CCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
73605917 TCCGGGTAAGACCCGATAACTTCGTGTAGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
73605951 TCGTCTGAGC
Statistics
Matches: 243, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
36 34 0.14
37 209 0.86
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:73607007 original size:17 final size:19
Alignment explanation
Indices: 73606975--73607009 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
73606965 GACCCCTGTT
73606975 TTGTGAAAATTTTTCTAAG
1 TTGTGAAAATTTTTCTAAG
73606994 TTGTG-AAA-TTTTCTAA
1 TTGTGAAAATTTTTCTAA
73607010 AGGTCTCGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 3 0.19
19 5 0.31
ACGTcount: A:0.31, C:0.06, G:0.14, T:0.49
Consensus pattern (19 bp):
TTGTGAAAATTTTTCTAAG
Found at i:73607268 original size:11 final size:10
Alignment explanation
Indices: 73607242--73607275 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
73607232 GGAGAGCACC
*
73607242 AAGAGTCAAA
1 AAGAGCCAAA
73607252 AAGAGCCAAA
1 AAGAGCCAAA
73607262 AACGAGCCAAA
1 AA-GAGCCAAA
73607273 AAG
1 AAG
73607276 GGACAAAACG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.59, C:0.18, G:0.21, T:0.03
Consensus pattern (10 bp):
AAGAGCCAAA
Found at i:73612095 original size:27 final size:28
Alignment explanation
Indices: 73612039--73612108 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
73612029 AAATTTGTAC
73612039 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
73612067 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
73612094 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73612109 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:73612119 original size:27 final size:27
Alignment explanation
Indices: 73612039--73612120 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
73612029 AAATTTGTAC
* *
73612039 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
73612067 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
73612094 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
73612121 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:73619812 original size:27 final size:28
Alignment explanation
Indices: 73619756--73619825 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
73619746 AAATTTGTAC
73619756 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
73619784 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
73619811 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73619826 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:73619836 original size:27 final size:27
Alignment explanation
Indices: 73619756--73619837 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
73619746 AAATTTGTAC
* *
73619756 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
73619784 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
73619811 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
73619838 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:73621943 original size:118 final size:119
Alignment explanation
Indices: 73621775--73621992 Score: 300
Period size: 118 Copynumber: 1.8 Consensus size: 119
73621765 GGACTAAGAT
* *
73621775 CCGAAGGCATTTGTGCGAGTTACTAAATCCGAACTAAGATCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTGGTGCGAGTTACTAAATCCGAACTAAGATCCGAAGGCATTTGTGCGAGCTACTA
* *
73621840 -ATCCCAGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTAATCCCGGGCTAAGC
66 TA-ACCAGGCTAAGTCCCGAAGGCATTGGAACGAGTTACTAATCCCGGGCTAAGC
**
73621893 CCGAAGGCATTGGTGCGAGTTACTAAATCC-AGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTAC
1 CCGAAGGCATTGGTGCGAGTTACTAAATCCGA-ACTAAGAT-CCGAAGGCATTTGTGCGAGCTAC
* * *
73621956 TATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
64 TATAACCAGGCTAAGTCCCGAAGGCATTGGAACGAGT
73621993 AGCTATATCT
Statistics
Matches: 87, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
117 2 0.02
118 65 0.75
119 20 0.23
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (119 bp):
CCGAAGGCATTGGTGCGAGTTACTAAATCCGAACTAAGATCCGAAGGCATTTGTGCGAGCTACTA
TAACCAGGCTAAGTCCCGAAGGCATTGGAACGAGTTACTAATCCCGGGCTAAGC
Found at i:73621949 original size:40 final size:39
Alignment explanation
Indices: 73621726--73621985 Score: 266
Period size: 40 Copynumber: 6.6 Consensus size: 39
73621716 ATGATGTCCG
* * *
73621726 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
73621765 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
73621805 GAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AATCCC
1 G-GCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT-CC
* *
73621845 AGGCTAAG-CCCGAAGGCATTGGTACGAGTTACT-AATCCC
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT-CC
*
73621884 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCC
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
73621923 AGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CC
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
73621963 GGGCTATGTCCCGAAGGCATTTG
1 -GGCTAAGTCCCGAAGGCATTTG
73621986 AACGAGTAGC
Statistics
Matches: 195, Mismatches: 16, Indels: 19
0.85 0.07 0.08
Matches are distributed among these distances:
39 72 0.37
40 112 0.57
41 11 0.06
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:73622008 original size:79 final size:78
Alignment explanation
Indices: 73621723--73621985 Score: 286
Period size: 79 Copynumber: 3.3 Consensus size: 78
73621713 CGAATGATGT
* * *
73621723 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCC-GGACTAAGAT-CCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-ATCCAGG-TTAAG-TCCCGAAGGCAT
73621785 TTGTGCGAGTTACTAAA
62 TTGTGCGAGTTACTAAA
** *
73621802 TCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATCCCAGGCTAAG-CCCGAAGGCATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT-CCAGGTTAAGTCCCGAAGGCATT
* * *
73621865 GGTACGAGTTACTAATC
63 TGTGCGAGTTACTAA-A
*
73621882 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCAGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AATCCAGGTTAAGTCCCGAAGGCATTTG
*
73621946 TGCGAGCTACTATAA
65 TGCGAGTTACTA-AA
*
73621961 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
73621986 AACGAGTAGC
Statistics
Matches: 155, Mismatches: 17, Indels: 22
0.80 0.09 0.11
Matches are distributed among these distances:
78 32 0.21
79 69 0.45
80 44 0.28
81 10 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCCAGGTTAAGTCCCGAAGGCATTTGT
GCGAGTTACTAAA
Found at i:73622016 original size:79 final size:79
Alignment explanation
Indices: 73621775--73622018 Score: 185
Period size: 79 Copynumber: 3.1 Consensus size: 79
73621765 GGACTAAGAT
* * * ** * * **
73621775 CCGAAGGCATTTGTGCGAGTTACTAA-ATCCGAACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 CCGAAGGCATTGGTACGAGCTACTAATA-CCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTACT
* *
73621839 -AATCCCAGGCT-AAGC
64 AAAT-CCAGGTTAAATC
* * **
73621854 CCGAAGGCATTGGTACGAGTTACTAATCCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTGGTACGAGCTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
73621919 ATCCAGGTTAAGTC
66 ATCCAGGTTAAATC
* * * *
73621933 CCGAAGGCATTTGTGCGAGCTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTGGTACGAGCTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
73621996 TATAT-CTGGTTAAATT
63 TAAATCCAGGTTAAATC
73622012 CCGAAGG
1 CCGAAGG
73622019 TACGTGATTC
Statistics
Matches: 137, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
78 31 0.23
79 84 0.61
80 22 0.16
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTGGTACGAGCTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCAGGTTAAATC
Found at i:73630187 original size:40 final size:40
Alignment explanation
Indices: 73630125--73630352 Score: 237
Period size: 40 Copynumber: 5.5 Consensus size: 40
73630115 AAGCCACGTA
* * *
73630125 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
*
73630164 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
73630204 CCTTCGGGACTTAGCGGATATAGTCTCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGC---------C-CGGATATAGTAACTCGCACGAATG
* *
73630254 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * * *
73630294 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
73630334 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73630353 TTATCATCCA
Statistics
Matches: 165, Mismatches: 11, Indels: 25
0.82 0.05 0.12
Matches are distributed among these distances:
39 13 0.08
40 111 0.67
41 1 0.01
49 1 0.01
50 39 0.24
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:73630255 original size:50 final size:51
Alignment explanation
Indices: 73630180--73630279 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 51
73630170 GGACATAGCC
73630180 CGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAG-CGGATATAGTCT
1 CGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCGGATATAGTCT
73630230 CGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAGT
1 CGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAG-CCGGATATAGT
73630280 AACTCACACA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
50 38 0.79
52 10 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (51 bp):
CGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCGGATATAGTCT
Found at i:73630294 original size:90 final size:90
Alignment explanation
Indices: 73630140--73630308 Score: 286
Period size: 90 Copynumber: 1.9 Consensus size: 90
73630130 GGGATTTAAC
* * *
73630140 CGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACGAATGC
1 CGGATATAGCTACTCGCACGAATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGC
73630205 CTTCGGGACTTAGCGGATATAGTCT
66 CTTCGGGACTTAGCGGATATAGTCT
*
73630230 CGGATATAG-TAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CGGATATAGCT-ACTCGCACGAATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATG
73630294 CCTTCGGGACTTAGC
65 CCTTCGGGACTTAGC
73630309 CCGGAACTAG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
89 1 0.01
90 73 0.99
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (90 bp):
CGGATATAGCTACTCGCACGAATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGC
CTTCGGGACTTAGCGGATATAGTCT
Found at i:73638365 original size:51 final size:51
Alignment explanation
Indices: 73638282--73638387 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 51
73638272 CCTTCGGGAC
73638282 ATAG-CCCGATATAGTAACTCGCACGAATGCCTTC-GGACTTAGCCCGGAT
1 ATAGTCCCGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGAT
73638331 ATAGTCCCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGAT
1 ATAGTCCC-GATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGAT
73638383 ATAGT
1 ATAGT
73638388 AACTCGCACA
Statistics
Matches: 54, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
49 4 0.07
50 3 0.06
51 27 0.50
52 20 0.37
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (51 bp):
ATAGTCCCGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGCCCGGAT
Found at i:73638391 original size:40 final size:40
Alignment explanation
Indices: 73638336--73638460 Score: 189
Period size: 40 Copynumber: 3.1 Consensus size: 40
73638326 CGGATATAGT
*
73638336 CCCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAG
1 CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG
73638376 CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG
1 CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG
* * * *
73638416 CCCAGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAG
1 CCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAG
73638456 CCCGG
1 CCCGG
73638461 TTATCATCCA
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 77 0.99
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.21
Consensus pattern (40 bp):
CCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG
Found at i:73641848 original size:36 final size:36
Alignment explanation
Indices: 73641797--73641869 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
73641787 AAATGTATGT
*
73641797 TTTATATTATTTTTTTACGGTAATACTTCGTAACCC
1 TTTATATTATATTTTTACGGTAATACTTCGTAACCC
*
73641833 TTTATATTATATTTTTACGGTAATATTTCGTAACCC
1 TTTATATTATATTTTTACGGTAATACTTCGTAACCC
73641869 T
1 T
73641870 ATTTCGACGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.26, C:0.15, G:0.08, T:0.51
Consensus pattern (36 bp):
TTTATATTATATTTTTACGGTAATACTTCGTAACCC
Found at i:73644841 original size:23 final size:24
Alignment explanation
Indices: 73644815--73644865 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
73644805 AGTATGATTT
73644815 TAATTG-AAATGATAAATTTAAAA
1 TAATTGAAAATGATAAATTTAAAA
* **
73644838 TAA-TGAAAATTATAAATTTTTAA
1 TAATTGAAAATGATAAATTTAAAA
73644861 TAATT
1 TAATT
73644866 TTAGAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 2 0.09
23 20 0.87
24 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (24 bp):
TAATTGAAAATGATAAATTTAAAA
Found at i:73645960 original size:19 final size:18
Alignment explanation
Indices: 73645918--73645963 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
73645908 ATTGATAAAT
*
73645918 GAATATTTTATTAATTTAT
1 GAATA-TTTATTAATTTAA
*
73645937 CAATATTTATTAATTTAGA
1 GAATATTTATTAATTTA-A
73645956 GAATATTT
1 GAATATTT
73645964 CATACTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (18 bp):
GAATATTTATTAATTTAA
Found at i:73646079 original size:35 final size:37
Alignment explanation
Indices: 73646037--73646109 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 37
73646027 GAATCAAAGC
*
73646037 TAATTGGTTCATGTAA-C-AAAGAAAAAAGAGTTAAT
1 TAATTGGTTCATGTAACCAAAAGAAAAAAAAGTTAAT
73646072 TAATTGGTTCATGTAACCAAAAAGAAAAAAAAGTTAAT
1 TAATTGGTTCATGTAACC-AAAAGAAAAAAAAGTTAAT
73646110 GGTTTCAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 16 0.47
36 1 0.03
38 17 0.50
ACGTcount: A:0.51, C:0.07, G:0.15, T:0.27
Consensus pattern (37 bp):
TAATTGGTTCATGTAACCAAAAGAAAAAAAAGTTAAT
Found at i:73646676 original size:53 final size:53
Alignment explanation
Indices: 73646596--73646701 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
73646586 ATTTAACTTC
73646596 TTAATTGGTTGGCTAGAACAGTTCAAGGCAAGATATGGGATTAAGTCTTATAG
1 TTAATTGGTTGGCTAGAACAGTTCAAGGCAAGATATGGGATTAAGTCTTATAG
*
73646649 TTAATTGGTTGGCTAGAACGGTTCAAGGCAAGATATGGGATTAAGTCTTATAG
1 TTAATTGGTTGGCTAGAACAGTTCAAGGCAAGATATGGGATTAAGTCTTATAG
73646702 AAGATTTGGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.31, C:0.09, G:0.27, T:0.32
Consensus pattern (53 bp):
TTAATTGGTTGGCTAGAACAGTTCAAGGCAAGATATGGGATTAAGTCTTATAG
Found at i:73658964 original size:6 final size:6
Alignment explanation
Indices: 73658955--73658985 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
73658945 CTCTCCTTGA
*
73658955 TTTTCC TTTTCT TTTTCT TTTTCT TTTTCT T
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT T
73658986 CTATTGGGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTCT
Found at i:73660297 original size:88 final size:88
Alignment explanation
Indices: 73660095--73660285 Score: 283
Period size: 88 Copynumber: 2.2 Consensus size: 88
73660085 TCTGATATAG
* * *
73660095 CAGTTTAACTGCAAACTTATCAGTACAGTAGTTTACCATACTGTACCACATGTACGATAGCTTTG
1 CAGTTTAACTGCAAACTTATCAGTACAGTAGTTTACCACACTATACCACATGTACGAAAGCTTTG
* *
73660160 CTATGTACTATTATCTGACCTGG
66 CTACGTACTATTATCTGACCTGA
* *
73660183 CAATTTAACTGCAAACTTATCAGTACAGTAGTTTACCACACTATACCGCATGTACGAAAGCTTTG
1 CAGTTTAACTGCAAACTTATCAGTACAGTAGTTTACCACACTATACCACATGTACGAAAGCTTTG
* * *
73660248 TTGCGTACTATTATCTGATCTGA
66 CTACGTACTATTATCTGACCTGA
73660271 CAGTTTAAACTGCAA
1 CAGTTT-AACTGCAA
73660286 CATGTCTGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
88 83 0.91
89 8 0.09
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (88 bp):
CAGTTTAACTGCAAACTTATCAGTACAGTAGTTTACCACACTATACCACATGTACGAAAGCTTTG
CTACGTACTATTATCTGACCTGA
Found at i:73662463 original size:14 final size:14
Alignment explanation
Indices: 73662444--73662470 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73662434 ATAATTAGTT
73662444 TTTTTTATTGTTAA
1 TTTTTTATTGTTAA
73662458 TTTTTTATTGTTA
1 TTTTTTATTGTTA
73662471 CTTCTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (14 bp):
TTTTTTATTGTTAA
Found at i:73662544 original size:13 final size:13
Alignment explanation
Indices: 73662526--73662551 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73662516 TTGGTTTTTC
73662526 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
73662539 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
73662552 CTGTTGGGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTCTTTTTCTT
Found at i:73675805 original size:28 final size:29
Alignment explanation
Indices: 73675773--73675871 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
73675763 GTAATAAGCC
*
73675773 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
73675801 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
73675829 TGCACACTTAGTGCTGTACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
73675858 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73675872 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:73686415 original size:41 final size:41
Alignment explanation
Indices: 73686370--73686487 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
73686360 TGAAAGATAA
73686370 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
73686411 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73686441 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73686482 ATGTAG
1 ATGTAG
73686488 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:73686426 original size:71 final size:71
Alignment explanation
Indices: 73686338--73686501 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73686328 GAGATGTATC
73686338 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73686403 AGGACA
66 AGGACA
73686409 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73686474 AGGACA
66 AGGACA
73686480 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73686502 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73694843 original size:79 final size:80
Alignment explanation
Indices: 73694712--73694908 Score: 267
Period size: 79 Copynumber: 2.5 Consensus size: 80
73694702 TCGAATGATG
* * * *
73694712 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
73694776 T-TGCAAGTTACTAAA
65 TGTGCAAGTTACTAAA
73694791 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
* *
73694855 TGTGCGAGTTATTAAA
65 TGTGCAAGTTACTAAA
* *
73694871 TACGGGA-TAAGTCCCGAAGGCATTTGTGCGAGCTACTA
1 T-CCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
73694909 TAACCGGGCT
Statistics
Matches: 105, Mismatches: 8, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
79 52 0.50
80 49 0.47
81 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCAAGTTACTAAA
Found at i:73694930 original size:40 final size:40
Alignment explanation
Indices: 73694712--73694908 Score: 251
Period size: 40 Copynumber: 5.0 Consensus size: 40
73694702 TCGAATGATG
* * * *
73694712 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
73694752 TCCGGACTAAGATCCGAAGGCATTT-TGCAAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
73694791 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
73694831 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73694871 TACGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 T-CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
73694909 TAACCGGGCT
Statistics
Matches: 144, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
39 35 0.24
40 101 0.70
41 8 0.06
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73694936 original size:40 final size:40
Alignment explanation
Indices: 73694712--73694936 Score: 246
Period size: 40 Copynumber: 5.7 Consensus size: 40
73694702 TCGAATGATG
* * *
73694712 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
73694752 TCCGGACTAAGAT-CCGAAGGCATTT-TGCAAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73694791 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73694831 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
73694871 TACGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
73694912 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73694937 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 125 0.75
41 6 0.04
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73703016 original size:79 final size:79
Alignment explanation
Indices: 73702885--73703074 Score: 258
Period size: 79 Copynumber: 2.4 Consensus size: 79
73702875 ATGTCCGGGC
* * * * *
73702885 TAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTCCGAG
73702950 TTACTAAATCC-GAA
65 TTACTAAATCCGGAA
73702964 CTAAGAT-CCGAAGGATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTCCGA
1 -TAAG-TCCCGAAGGATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTCCGA
* *
73703028 GTTATTAAATCCGGGA
64 GTTACTAAATCCGGAA
*
73703044 TAAGTCCCGAAGGCATTTGTGCGAGCTACTA
1 TAAGTCCCGAAGG-ATTTGTGCGAGTTACTA
73703075 TAACCGGGCT
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.61
80 36 0.37
81 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTCCGAGT
TACTAAATCCGGAA
Found at i:73703102 original size:40 final size:40
Alignment explanation
Indices: 73702878--73703074 Score: 251
Period size: 40 Copynumber: 5.0 Consensus size: 40
73702868 TCGAATGATG
* * * *
73702878 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
73702918 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
73702958 TCCGAACTAAGATCCGAAGG-ATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
* *
73702997 TCCGGACTAAGATCCGAAGGCATTTGTCCGAGTTATTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
73703037 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
73703075 TAACCGGGCT
Statistics
Matches: 141, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
39 39 0.28
40 91 0.65
41 11 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73703116 original size:40 final size:40
Alignment explanation
Indices: 73703010--73703121 Score: 102
Period size: 40 Copynumber: 2.8 Consensus size: 40
73703000 GGACTAAGAT
** * *
73703010 CCGAAGGCATTTGTCCGAGTTATTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
73703050 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
73703090 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
73703122 TTAAACTCCG
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
39 2 0.03
40 57 0.93
41 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:73707110 original size:19 final size:19
Alignment explanation
Indices: 73707086--73707132 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
73707076 ACTGTTATTG
73707086 TTTTAAATTAAAGGCATAA
1 TTTTAAATTAAAGGCATAA
73707105 TTTTAAATTAAAGGCATAA
1 TTTTAAATTAAAGGCATAA
*
73707124 TTCTAAATT
1 TTTTAAATT
73707133 TAGTCTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (19 bp):
TTTTAAATTAAAGGCATAA
Found at i:73707353 original size:16 final size:17
Alignment explanation
Indices: 73707332--73707363 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
73707322 ATTTCATATT
73707332 AATTTTTTTT-ATTTTG
1 AATTTTTTTTAATTTTG
73707348 AATTTTTTTTAATTTT
1 AATTTTTTTTAATTTT
73707364 TAAATTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (17 bp):
AATTTTTTTTAATTTTG
Found at i:73707781 original size:20 final size:20
Alignment explanation
Indices: 73707756--73707795 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
73707746 AAAATATTAA
73707756 TTTTTTAGTGATGTTGGTGT
1 TTTTTTAGTGATGTTGGTGT
73707776 TTTTTTAGTGATGTTGGTGT
1 TTTTTTAGTGATGTTGGTGT
73707796 GGCAACCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.00, G:0.30, T:0.60
Consensus pattern (20 bp):
TTTTTTAGTGATGTTGGTGT
Found at i:73707914 original size:10 final size:10
Alignment explanation
Indices: 73707899--73707926 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
73707889 TATAAATTAT
73707899 AAAAAAATTC
1 AAAAAAATTC
73707909 AAAAAAATTC
1 AAAAAAATTC
73707919 AAAAAAAT
1 AAAAAAAT
73707927 AGCATGAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:73710101 original size:22 final size:22
Alignment explanation
Indices: 73710071--73710115 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
73710061 TTCACTATTA
*
73710071 CCAATACAATGAGTGCATTGAG
1 CCAAGACAATGAGTGCATTGAG
73710093 CCAAGACAATGAGTGCATTGAG
1 CCAAGACAATGAGTGCATTGAG
73710115 C
1 C
73710116 ACATACTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (22 bp):
CCAAGACAATGAGTGCATTGAG
Found at i:73719448 original size:24 final size:24
Alignment explanation
Indices: 73719377--73719449 Score: 94
Period size: 24 Copynumber: 3.0 Consensus size: 24
73719367 ATAAATAGCA
* *
73719377 AAAGAGTTACAAGAAGATGAAAGAT
1 AAAGAGTTA-AGGAAGATGAAAGGT
73719402 AAAGAGTTAAGGAAGATGAAAGGT
1 AAAGAGTTAAGGAAGATGAAAGGT
*
73719426 GAAAG-GTTAAGGAAGAGGAAAGGT
1 -AAAGAGTTAAGGAAGATGAAAGGT
73719450 TGAACATCCA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
24 31 0.70
25 13 0.30
ACGTcount: A:0.51, C:0.01, G:0.33, T:0.15
Consensus pattern (24 bp):
AAAGAGTTAAGGAAGATGAAAGGT
Found at i:73720375 original size:11 final size:11
Alignment explanation
Indices: 73720361--73720424 Score: 76
Period size: 11 Copynumber: 5.9 Consensus size: 11
73720351 AATATTCCCT
*
73720361 TCAAAAATCTA
1 TCAAAATTCTA
*
73720372 TCAAATTTC-A
1 TCAAAATTCTA
* * *
73720382 TCAAATTTTTC
1 TCAAAATTCTA
73720393 TCAAAATTCTA
1 TCAAAATTCTA
73720404 TCAAAATTCTA
1 TCAAAATTCTA
73720415 TCAAAATTCT
1 TCAAAATTCT
73720425 TTGTTTAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
10 9 0.20
11 36 0.80
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (11 bp):
TCAAAATTCTA
Found at i:73720665 original size:48 final size:47
Alignment explanation
Indices: 73720557--73720689 Score: 162
Period size: 47 Copynumber: 2.8 Consensus size: 47
73720547 AGTAATAATT
* * *
73720557 TTAAATTTTCAATACTATTAGATATTTTTTAATTTATGCAAATTTAA
1 TTAAAATTTCAATACTATTTGATATTTTTTCATTTATGCAAATTTAA
73720604 TT-AAATTTGCAATACTATTTGATATTTTATTCATTTATGC-AATTATAA
1 TTAAAATTT-CAATACTATTTGATATTTT-TTCATTTATGCAAATT-TAA
* ** *
73720652 TTAAAATTTCAATATTGCTTGATTTTTTTTCATTTATG
1 TTAAAATTTCAATACTATTTGATATTTTTTCATTTATG
73720690 ATGTTTGTAT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
46 5 0.07
47 34 0.45
48 30 0.40
49 6 0.08
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.53
Consensus pattern (47 bp):
TTAAAATTTCAATACTATTTGATATTTTTTCATTTATGCAAATTTAA
Found at i:73720737 original size:15 final size:15
Alignment explanation
Indices: 73720717--73720747 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
73720707 TTTATGCAAT
*
73720717 TTTTATTAATTTTTA
1 TTTTATAAATTTTTA
73720732 TTTTATAAATTTTTA
1 TTTTATAAATTTTTA
73720747 T
1 T
73720748 AATAGTCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTATAAATTTTTA
Found at i:73721683 original size:7 final size:7
Alignment explanation
Indices: 73721661--73721717 Score: 87
Period size: 7 Copynumber: 8.0 Consensus size: 7
73721651 CGTAATAAAA
73721661 TAGTAGTT
1 TAGTA-TT
*
73721669 TCGTATT
1 TAGTATT
73721676 TAGTATT
1 TAGTATT
*
73721683 TAGCATT
1 TAGTATT
73721690 TAGTATT
1 TAGTATT
73721697 TAGTATT
1 TAGTATT
73721704 TAGTATT
1 TAGTATT
73721711 TAGTATT
1 TAGTATT
73721718 ATGTATTATG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
7 41 0.91
8 4 0.09
ACGTcount: A:0.26, C:0.04, G:0.16, T:0.54
Consensus pattern (7 bp):
TAGTATT
Found at i:73721723 original size:7 final size:7
Alignment explanation
Indices: 73721713--73721737 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
73721703 TTAGTATTTA
73721713 GTATTAT
1 GTATTAT
73721720 GTATTAT
1 GTATTAT
73721727 GTATTAT
1 GTATTAT
73721734 GTAT
1 GTAT
73721738 ATAAGAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (7 bp):
GTATTAT
Found at i:73722343 original size:18 final size:18
Alignment explanation
Indices: 73722317--73722358 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
73722307 GCCAGGTGCA
73722317 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
* *
73722335 TATCTTAACCTTTATATG
1 TATCCTAACCCTTATATG
*
73722353 TTTCCT
1 TATCCT
73722359 TTTCCTAGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.05, T:0.48
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:73726996 original size:18 final size:18
Alignment explanation
Indices: 73726973--73727012 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
73726963 TGGTGTGCAT
73726973 GCATTCGGTTAGAGGCAA
1 GCATTCGGTTAGAGGCAA
73726991 GCATTCGGTTAGAGGCAA
1 GCATTCGGTTAGAGGCAA
73727009 GCAT
1 GCAT
73727013 ATTGATGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.23
Consensus pattern (18 bp):
GCATTCGGTTAGAGGCAA
Found at i:73727699 original size:40 final size:40
Alignment explanation
Indices: 73727644--73727832 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
73727634 TGAATGATAC
* * *
73727644 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTATTATAT
* * * *
73727684 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTATTATAT
* * *
73727724 CCGGGCTAAGACCTGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTTATTATAT
* * ** *
73727764 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTATTATAT
*
73727804 CCGGGTTAAGACCCGAAGGCAATTGTGCT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCT
73727833 TGTGGTTATA
Statistics
Matches: 128, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 124 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTATTATAT
Found at i:73727841 original size:80 final size:80
Alignment explanation
Indices: 73727644--73727845 Score: 244
Period size: 80 Copynumber: 2.5 Consensus size: 80
73727634 TGAATGATAC
* * * *
73727644 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTTATATCCGGGCTAAGACCCGAAGGCATTTA
* ** *
73727709 TGCTAGTGATTATAT
66 TGCAAGTGACCAAAT
* * *
73727724 CCGGGCTAAGACCTGAAGGC-ATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTTATATCCGGGCTAAGACCCGAAGGCATTT
* *
73727788 GTGCAAGTTACCAAAT
65 ATGCAAGTGACCAAAT
* * *
73727804 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTTATATCC
73727846 AGTTAAATTC
Statistics
Matches: 102, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
79 3 0.03
80 96 0.94
81 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCAAGTGACCAAAT
Found at i:73735767 original size:40 final size:40
Alignment explanation
Indices: 73735712--73735875 Score: 184
Period size: 40 Copynumber: 4.1 Consensus size: 40
73735702 TGAATGATAC
* *
73735712 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
* *
73735752 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
* * * * * ** *
73735792 TCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
* * * *
73735832 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
73735872 CCGG
1 CCGG
73735876 TTAAATTCCG
Statistics
Matches: 104, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCTAGTGATTATAT
Found at i:73737689 original size:125 final size:126
Alignment explanation
Indices: 73737296--73737790 Score: 744
Period size: 126 Copynumber: 3.9 Consensus size: 126
73737286 TTATAGCCTC
*
73737296 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAAAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACATGGGAGCTTTTTTCAAAAATTTTGCTG
*
73737361 ACAGTGTATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACAG-CTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAAC-GTCTACTCAGAATT
* * *
73737422 ATTTTTCTACGAACTACTGTAACAAAAGAGTGTCAACATGGGAGCTTTTTTCAAAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACATGGGAGCTTTTTTCAAAAATTTTGCTG
* * * * * **
73737487 ACAGTGCATCTTGCTTGAAGCGTTTTTGACACTATTTATTTAGAAATATCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * * * * *
73737548 ATTTTTCTACGAACTACTGTAGCAAAATAGTGTCCACGTGGGAGTTTTTTTCAGAAATTTTGCTA
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACATGGGAGCTTTTTTCAAAAATTTTGCTG
* * *
73737613 ACAGTGCATCCTAC-TGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTTAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* *
73737673 ATTTTTCTACGAACTACT-TAGCAAAAGAGCATCCACATGGGAGCTTTTTTCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACATGGGAGCTTTTTTCAAAAATTTTGCTG
*
73737737 ACAGTGTATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACT
73737791 GAAAATTGTT
Statistics
Matches: 331, Mismatches: 36, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
124 52 0.16
125 96 0.29
126 183 0.55
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACATGGGAGCTTTTTTCAAAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:73738353 original size:20 final size:19
Alignment explanation
Indices: 73738328--73738398 Score: 85
Period size: 19 Copynumber: 3.8 Consensus size: 19
73738318 ACGACTATGT
73738328 ATCAATTAACCTTAAGTTTA
1 ATCAATTAACCTTAA-TTTA
*
73738348 ATCAATTAAACTTAATTTA
1 ATCAATTAACCTTAATTTA
*
73738367 ATCAA-T--CCCTAATTTA
1 ATCAATTAACCTTAATTTA
*
73738383 ATCAATTAACCCTAAT
1 ATCAATTAACCTTAAT
73738399 ACCCTAAACT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
16 13 0.29
17 1 0.02
18 1 0.02
19 16 0.36
20 14 0.31
ACGTcount: A:0.42, C:0.18, G:0.01, T:0.38
Consensus pattern (19 bp):
ATCAATTAACCTTAATTTA
Found at i:73738368 original size:19 final size:20
Alignment explanation
Indices: 73738328--73738372 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
73738318 ACGACTATGT
*
73738328 ATCAATTAACCTTAAGTTTA
1 ATCAATTAAACTTAAGTTTA
73738348 ATCAATTAAACTTAA-TTTA
1 ATCAATTAAACTTAAGTTTA
73738367 ATCAAT
1 ATCAAT
73738373 CCCTAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.44, C:0.13, G:0.02, T:0.40
Consensus pattern (20 bp):
ATCAATTAAACTTAAGTTTA
Found at i:73739490 original size:30 final size:30
Alignment explanation
Indices: 73739456--73739521 Score: 71
Period size: 31 Copynumber: 2.2 Consensus size: 30
73739446 AAAAAAAAAT
* *
73739456 TTTAAC-CCAATTGTGAGAATAATTACCTAA
1 TTTAACTCCAA-TGTGAAAACAATTACCTAA
**
73739486 TTTAAACTTTAATGTGAAAACAATTACCTAA
1 TTT-AACTCCAATGTGAAAACAATTACCTAA
73739517 TTTAA
1 TTTAA
73739522 ATTTCAATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
30 5 0.17
31 23 0.77
32 2 0.07
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.36
Consensus pattern (30 bp):
TTTAACTCCAATGTGAAAACAATTACCTAA
Found at i:73739502 original size:31 final size:31
Alignment explanation
Indices: 73739467--73739536 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
73739457 TTAACCCAAT
* *
73739467 TGTGAGAATAATTACCTAATTTAAACTTT-AA
1 TGTGAAAACAATTACCTAATTTAAA-TTTCAA
73739498 TGTGAAAACAATTACCTAATTTAAATTTCAA
1 TGTGAAAACAATTACCTAATTTAAATTTCAA
*
73739529 TGTAAAAA
1 TGTGAAAA
73739537 AACCCAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
30 3 0.09
31 32 0.91
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.36
Consensus pattern (31 bp):
TGTGAAAACAATTACCTAATTTAAATTTCAA
Found at i:73740542 original size:30 final size:31
Alignment explanation
Indices: 73740483--73740542 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
73740473 ATTAGTAAAA
*
73740483 ATAAAATTGTACTTTAATCCCTATAAAAATG
1 ATAAAATTGTAATTTAATCCCTATAAAAATG
* *
73740514 ATAAAATTTTAATTTAAT-CCTTTAAAAAT
1 ATAAAATTGTAATTTAATCCCTATAAAAAT
73740543 TATATTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.40
Consensus pattern (31 bp):
ATAAAATTGTAATTTAATCCCTATAAAAATG
Found at i:73743867 original size:15 final size:16
Alignment explanation
Indices: 73743849--73743882 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
73743839 AAATACAAAA
*
73743849 TTATTAA-TCTTATTT
1 TTATTAATTATTATTT
73743864 TTATTAATTATTATTT
1 TTATTAATTATTATTT
73743880 TTA
1 TTA
73743883 AAGTAATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATTAATTATTATTT
Found at i:73752298 original size:6 final size:6
Alignment explanation
Indices: 73752287--73752313 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
73752277 ACAATTATAC
73752287 CAACAT CAACAT CAACAT CAACAT CAA
1 CAACAT CAACAT CAACAT CAACAT CAA
73752314 TTTAGTACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (6 bp):
CAACAT
Found at i:73753446 original size:35 final size:35
Alignment explanation
Indices: 73753400--73753468 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
73753390 ACTTGCCTCT
73753400 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
*
73753435 TCCCACTCTCCCATGCTGTCTGCCGCCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
73753469 TCACACACCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.16, C:0.51, G:0.13, T:0.20
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:73754224 original size:11 final size:11
Alignment explanation
Indices: 73754195--73754239 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
73754185 CGACCGGATT
* *
73754195 TCCCTTCCCCC
1 TCCCTTCTCTC
73754206 TCCCTTCTCTC
1 TCCCTTCTCTC
73754217 TCCCTTCTCTC
1 TCCCTTCTCTC
73754228 TTCCC-TCTCTC
1 -TCCCTTCTCTC
73754239 T
1 T
73754240 TCTTTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
10 1 0.03
11 26 0.84
12 4 0.13
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (11 bp):
TCCCTTCTCTC
Found at i:73754788 original size:23 final size:23
Alignment explanation
Indices: 73754762--73754818 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
73754752 TCATTTCTAA
73754762 TATGTATATATATATATATATAT
1 TATGTATATATATATATATATAT
*
73754785 TATGTGTATATATATATATATAT
1 TATGTATATATATATATATATAT
73754808 TATGTATATAT
1 TATGTATATAT
73754819 GCCATTAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (23 bp):
TATGTATATATATATATATATAT
Found at i:73754835 original size:2 final size:2
Alignment explanation
Indices: 73754761--73754818 Score: 66
Period size: 2 Copynumber: 30.0 Consensus size: 2
73754751 ATCATTTCTA
* * *
73754761 AT AT GT AT AT AT AT AT AT AT AT AT -T AT GT GT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
73754802 AT AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT
73754819 GCCATTAGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
1 2 0.04
2 46 0.96
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (2 bp):
AT
Found at i:73754994 original size:21 final size:21
Alignment explanation
Indices: 73754970--73755011 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
73754960 ATTATATTAG
73754970 TGTATAAAATATACATATATA
1 TGTATAAAATATACATATATA
* * *
73754991 TGTATTATATATATATATATA
1 TGTATAAAATATACATATATA
73755012 ATTTGCACAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (21 bp):
TGTATAAAATATACATATATA
Found at i:73766390 original size:73 final size:74
Alignment explanation
Indices: 73766285--73766432 Score: 289
Period size: 73 Copynumber: 2.0 Consensus size: 74
73766275 AATATTATGC
73766285 TTAGGATGAAAACCCGAAAAGGGCATCTAAAAAAAAAAA-GATCAGAGCGAAAACCCGAAAAGGG
1 TTAGGATGAAAACCCGAAAAGGGCATCTAAAAAAAAAAAGGATCAGAGCGAAAACCCGAAAAGGG
73766349 CGCTTTGGT
66 CGCTTTGGT
73766358 TTAGGATGAAAACCCGAAAAGGGCATCTAAAAAAAAAAAGGATCAGAGCGAAAACCCGAAAAGGG
1 TTAGGATGAAAACCCGAAAAGGGCATCTAAAAAAAAAAAGGATCAGAGCGAAAACCCGAAAAGGG
73766423 CGCTTTGGT
66 CGCTTTGGT
73766432 T
1 T
73766433 AAACATAAAA
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
73 39 0.53
74 35 0.47
ACGTcount: A:0.45, C:0.16, G:0.25, T:0.14
Consensus pattern (74 bp):
TTAGGATGAAAACCCGAAAAGGGCATCTAAAAAAAAAAAGGATCAGAGCGAAAACCCGAAAAGGG
CGCTTTGGT
Found at i:73767291 original size:70 final size:70
Alignment explanation
Indices: 73767204--73767568 Score: 685
Period size: 70 Copynumber: 5.2 Consensus size: 70
73767194 CAAGTGACAG
*
73767204 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
73767269 GTTTC
66 GTTTC
73767274 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
73767339 GTTTC
66 GTTTC
*
73767344 AAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
73767409 GTTTC
66 GTTTC
*
73767414 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAAACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
73767479 GTTTC
66 GTTTC
*
73767484 AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
73767549 GTTTC
66 GTTTC
73767554 AAAAATCAACTCATA
1 -AAAATCAACTCATA
73767569 GGTGAGTTGA
Statistics
Matches: 288, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
70 274 0.95
71 14 0.05
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
GTTTC
Done.