Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 243 of 335
Found at i:73767755 original size:48 final size:51
Alignment explanation
Indices: 73767628--73767774 Score: 176
Period size: 48 Copynumber: 2.9 Consensus size: 51
73767618 CAATTCCTGT
* *
73767628 TTTTTCAAAAATCAACTCACATTGCAAGAGGTGAGTTGAGCCTGTTAATTTCTG
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT-ATTTCTG
* *
73767682 TCTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CC-T-TTT-TG
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTTATTTCTG
**
73767730 TTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTTA
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTA
73767775 GGTCATATGT
Statistics
Matches: 81, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
47 1 0.01
48 38 0.47
49 4 0.05
51 1 0.01
54 36 0.44
55 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (51 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTATTTCTG
Found at i:73768525 original size:35 final size:35
Alignment explanation
Indices: 73768479--73768584 Score: 194
Period size: 35 Copynumber: 3.0 Consensus size: 35
73768469 CACTTGCCTC
73768479 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
73768514 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
* *
73768549 CTCCCACTCTCCCATGCTGTCTGCCGCCAGCACCA
1 TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
73768584 T
1 T
73768585 CACACACCCA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.16, C:0.49, G:0.12, T:0.23
Consensus pattern (35 bp):
TTCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
Found at i:73769029 original size:33 final size:33
Alignment explanation
Indices: 73768987--73769061 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
73768977 AGAGGGGAAG
*
73768987 CAAAAAAAAAAATCCAGCAAAAAA-TTCCAGCA
1 CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
**
73769019 CCAAAAAAAAATTTCCAGAAAAAAATTTCCAGCA
1 -CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
73769053 -AAAAAAAAA
1 CAAAAAAAAA
73769062 CCAAAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 9 0.24
33 21 0.55
34 8 0.21
ACGTcount: A:0.64, C:0.19, G:0.05, T:0.12
Consensus pattern (33 bp):
CAAAAAAAAAAATCCAGAAAAAAATTTCCAGCA
Found at i:73769352 original size:22 final size:22
Alignment explanation
Indices: 73769324--73769373 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
73769314 CGACCGGATT
73769324 TCCCTTC-CTCCTCCCTTCTCTC
1 TCCCTTCTCTCCTCCC-TCTCTC
*
73769346 TCCCTTCTCTCTTCCCTCTCTC
1 TCCCTTCTCTCCTCCCTCTCTC
*
73769368 TTCCTT
1 TCCCTT
73769374 TTTTTCTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 18 0.72
23 7 0.28
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (22 bp):
TCCCTTCTCTCCTCCCTCTCTC
Found at i:73769900 original size:22 final size:23
Alignment explanation
Indices: 73769882--73770008 Score: 89
Period size: 22 Copynumber: 5.2 Consensus size: 23
73769872 CTAATATGTA
73769882 TATATATATATATATATATTATG
1 TATATATATATATATATATTATG
*
73769905 TGTAT-TATATATATATATTATG
1 TATATATATATATATATATTATG
*
73769927 TATATATGCCATTAGTTATATATTTCTTATG
1 TATATAT---A-TA--TATATA--TATTATG
* * *
73769958 TATATAT-TCTTAAATACTATTATA
1 TATATATAT-ATATATA-TATTATG
*
73769982 TACATATATATATATATA-TATG
1 TATATATATATATATATATTATG
73770004 TATAT
1 TATAT
73770009 TTTAAATTCC
Statistics
Matches: 80, Mismatches: 13, Indels: 23
0.69 0.11 0.20
Matches are distributed among these distances:
22 28 0.35
23 7 0.09
24 16 0.20
25 6 0.08
26 2 0.03
27 2 0.03
29 6 0.08
31 13 0.16
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.51
Consensus pattern (23 bp):
TATATATATATATATATATTATG
Found at i:73769949 original size:2 final size:2
Alignment explanation
Indices: 73769875--73769933 Score: 61
Period size: 2 Copynumber: 31.0 Consensus size: 2
73769865 ATCATTTCTA
* * *
73769875 AT AT GT AT AT AT AT AT AT AT AT AT AT -T AT GT GT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
73769915 AT AT AT AT -T AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
73769934 GCCATTAGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
1 3 0.06
2 45 0.94
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.53
Consensus pattern (2 bp):
AT
Found at i:73770114 original size:2 final size:2
Alignment explanation
Indices: 73770097--73770149 Score: 88
Period size: 2 Copynumber: 26.5 Consensus size: 2
73770087 GTGTATATTT
* *
73770097 TA TA TA CA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
73770139 TA TA TA TA TA T
1 TA TA TA TA TA T
73770150 TTGCACATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:73771904 original size:26 final size:24
Alignment explanation
Indices: 73771859--73771906 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
73771849 GTATCATTTT
*
73771859 TATTTGTTTTTATGTTTTTAAATA
1 TATTTGTTTTTATATTTTTAAATA
73771883 TATTTGATTTATTATATTTTTAAA
1 TATTTG-TTT-TTATATTTTTAAA
73771907 ATTTTTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (24 bp):
TATTTGTTTTTATATTTTTAAATA
Found at i:73774391 original size:23 final size:22
Alignment explanation
Indices: 73774364--73774419 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
73774354 TTTAAACTTT
73774364 TAAATTTAAAAAAATAATAAAAC
1 TAAATTTAAAAAAATAA-AAAAC
** *
73774387 TAAATTTTTAAAAATAAAAAAT
1 TAAATTTAAAAAAATAAAAAAC
73774409 TAAATATTAAA
1 TAAAT-TTAAA
73774420 TTTCAAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 9 0.33
23 18 0.67
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (22 bp):
TAAATTTAAAAAAATAAAAAAC
Found at i:73779629 original size:23 final size:23
Alignment explanation
Indices: 73779598--73779652 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
73779588 CAATGATGTG
73779598 AATAATAAAATAT-ATAAATATAA
1 AATAATAAAATATCA-AAATATAA
* *
73779621 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATA-TAA
73779645 AATAATAA
1 AATAATAA
73779653 TAATTAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.63
24 10 0.37
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (23 bp):
AATAATAAAATATCAAAATATAA
Found at i:73779638 original size:8 final size:7
Alignment explanation
Indices: 73779602--73779641 Score: 53
Period size: 8 Copynumber: 5.3 Consensus size: 7
73779592 GATGTGAATA
73779602 ATAAAAT
1 ATAAAAT
73779609 ATATAAAT
1 ATA-AAAT
73779617 ATAAAAT
1 ATAAAAT
73779624 ATTAAAAT
1 A-TAAAAT
73779632 ATCAAAAT
1 AT-AAAAT
73779640 AT
1 AT
73779642 TAGAATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 9 0.30
8 21 0.70
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (7 bp):
ATAAAAT
Found at i:73779640 original size:16 final size:15
Alignment explanation
Indices: 73779602--73779648 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
73779592 GATGTGAATA
73779602 ATAAAATA-TATAAAT
1 ATAAAATATTA-AAAT
73779617 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
73779632 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
73779648 A
1 A
73779649 ATAATAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 14 0.48
16 15 0.52
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:73779648 original size:8 final size:8
Alignment explanation
Indices: 73779598--73779648 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
73779588 CAATGATGTG
*
73779598 AATAATAA
1 AATATTAA
73779606 AATA-TATA
1 AATATTA-A
73779614 AATA-TAA
1 AATATTAA
73779621 AATATTAA
1 AATATTAA
*
73779629 AATATCAA
1 AATATTAA
*
73779637 AATATTAG
1 AATATTAA
73779645 AATA
1 AATA
73779649 ATAATAATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
7 7 0.18
8 31 0.82
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:73779866 original size:22 final size:24
Alignment explanation
Indices: 73779803--73779867 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
73779793 CGTGATAATA
*
73779803 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
73779828 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
73779851 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
73779868 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:73779929 original size:14 final size:14
Alignment explanation
Indices: 73779890--73779951 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 14
73779880 GAAAAAAATT
73779890 ATATATATAAAT-A
1 ATATATATAAATAA
*
73779903 ATATA-AT-ATTAA
1 ATATATATAAATAA
*
73779915 AGATATATAAATAA
1 ATATATATAAATAA
*
73779929 A-ATAGTATAAATAT
1 ATATA-TATAAATAA
73779943 ATATATATA
1 ATATATATA
73779952 CGTAATATAG
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
11 2 0.05
12 7 0.17
13 10 0.25
14 18 0.45
15 3 0.08
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (14 bp):
ATATATATAAATAA
Found at i:73780024 original size:23 final size:25
Alignment explanation
Indices: 73779981--73780026 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73779971 TATACCTAAT
73779981 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
73780006 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
73780027 ACAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:73780026 original size:45 final size:49
Alignment explanation
Indices: 73779892--73780026 Score: 120
Period size: 51 Copynumber: 2.8 Consensus size: 49
73779882 AAAAAATTAT
* * * *
73779892 ATATATAAATAATATAATATTAAAGATATATAAATAAAATAGTATAAATAT
1 ATATATATATAATATAATATT-AAGAAATAT-AATAATATAGTATAAATAG
* *
73779943 ATATATATACGTAATATAGA-ATTTA-AAATATACCTAATATA-T-TAAA-AG
1 ATATATATA--TAATATA-ATATTAAGAAATATA-ATAATATAGTATAAATAG
73779991 A-ATATATATAATATAATATTAAGAAATATAATAATA
1 ATATATATATAATATAATATTAAGAAATATAATAATA
73780027 ACAAAAAAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
44 1 0.01
45 16 0.23
46 7 0.10
47 7 0.10
48 2 0.03
49 4 0.06
50 2 0.03
51 19 0.27
52 1 0.01
53 10 0.14
54 1 0.01
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (49 bp):
ATATATATATAATATAATATTAAGAAATATAATAATATAGTATAAATAG
Found at i:73780589 original size:30 final size:30
Alignment explanation
Indices: 73780511--73780645 Score: 157
Period size: 30 Copynumber: 4.5 Consensus size: 30
73780501 TAGGTACAAG
* *
73780511 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
73780541 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
*
73780571 TGGTGGTGGAAAATGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
73780601 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
73780631 TGGTGGTGGAAAAGG
1 TGGTGGTGGAAAAGG
73780646 CTAAGATTTA
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 2 0.02
30 90 0.98
ACGTcount: A:0.22, C:0.04, G:0.47, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:73781541 original size:79 final size:77
Alignment explanation
Indices: 73781428--73781979 Score: 342
Period size: 78 Copynumber: 7.0 Consensus size: 77
73781418 AAACAGAATC
** * * * *
73781428 TGAAAAACAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAATGT
1 TGAAAAACAGAAATTGAAAATACCTCAG-CGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
73781492 GAGTTGATTTTTT
65 GAGTTGATTTTTT
* * * * *
73781505 TGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATA
1 TGAAAAACAGAAATTG--AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
73781570 TGAGTTGATTTTTT
64 TGAGTTGATTTTTT
* * * *
73781584 TGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATAT
73781648 GAGTTGATTTTTTTTT
65 GAGTTGA---TTTTTT
** ** *** * * *
73781664 TGAAAGGCAGAAATTGAAAA-A-CGAAAATTGAAAAT-ACCTCGGCGTGTGACCTGAGGCTCAAC
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTG----TGACCT----GAG-G--CTCA-ACTC-AC
* * ** *
73781726 TCGCCTCTCACAAT-A--CGAGTTGATTTT
53 -C-TCTCGCAATATGAGTTGA-TT--TTTT
* *
73781753 TTTG-ACAACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATA
1 --TGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
73781815 TGAGTTGATTTTTT
64 TGAGTTGATTTTTT
* * ** *
73781829 TGAAAAACAGAAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCACAATATG
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
73781892 AGTTGATTTTTTTTT
66 AGTTGA---TTTTTT
* * * **
73781907 TGAAAAACAGAAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTAATTTCTCGCAATATG
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
*
73781970 AGCTGATTTT
66 AGTTGATTTT
73781980 GAAAAAGTAG
Statistics
Matches: 375, Mismatches: 64, Indels: 74
0.73 0.12 0.14
Matches are distributed among these distances:
74 2 0.01
75 63 0.17
76 11 0.03
77 61 0.16
78 80 0.21
79 71 0.19
80 31 0.08
81 1 0.00
82 2 0.01
83 2 0.01
85 1 0.00
86 1 0.00
87 5 0.01
88 4 0.01
89 9 0.02
90 15 0.04
91 5 0.01
92 11 0.03
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (77 bp):
TGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTT
Found at i:73781635 original size:77 final size:78
Alignment explanation
Indices: 73781467--73781683 Score: 276
Period size: 77 Copynumber: 2.7 Consensus size: 78
73781457 ATGTGACCCG
* * * * *
73781467 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG--AAAATACCT
* * * *
73781532 CAGTGTGTGATCTGA
64 CAGCGCGTGAGCTCA
*
73781547 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
73781611 GCGCGTGAGC-CA
66 GCGCGTGAGCTCA
*
73781623 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGGCAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAGACAGAAATTGAAAA
73781684 ACGAAAATTG
Statistics
Matches: 122, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
76 2 0.02
77 47 0.39
79 47 0.39
80 26 0.21
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA
GCGCGTGAGCTCA
Found at i:73781727 original size:171 final size:168
Alignment explanation
Indices: 73781523--73781829 Score: 463
Period size: 171 Copynumber: 1.8 Consensus size: 168
73781513 ATAAATTGAA
* * * *
73781523 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
*
73781588 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
66 A-ACAGAAATTGAAAATACCTCA--GCGTG-GCCTAAGGCTCAACTCACCTCTCGCAATATGAGT
73781652 TGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
127 TGATTTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
* * * *
73781694 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
* * *
73781759 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
73781824 TTTTTT
131 TTTTTT
73781830 GAAAAACAGA
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
167 2 0.02
168 44 0.36
170 19 0.15
171 58 0.47
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.30
Consensus pattern (168 bp):
AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
AACAGAAATTGAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTTTTGAAAGGCAGAAATTGAAAAACGAAAATTG
Found at i:73781850 original size:245 final size:247
Alignment explanation
Indices: 73781357--73781926 Score: 725
Period size: 250 Copynumber: 2.3 Consensus size: 247
73781347 ATTAAAACAG
* *
73781357 AAATAGCTCAGCACGTGAGCTAAGGCTCAACTCACCTTTCACAATATGAGTTGA-----TTTTTG
1 AAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTTTG
**
73781417 AAAACAG-AATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACA
66 AAAACAGAAAT-TGAAAAACAGAAATTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACA
* ** * * * *
73781481 TCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTG
130 TCTCACAATACGAGTTGATTTTTTTGAAAAACAGAAATTG-AAAAATACCTCAGCGTGT-ACCTG
*
73781546 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGA
193 AAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGA
* *
73781601 AAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTG
1 AAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTTTG
* * * * *
73781666 AAAGGCAGAAATTGAAAAAC-GAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGC
66 AAA-ACAGAAATTGAAAAACAG-AAATTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCAC
* * *
73781730 CTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATTG-AAATTACCTCAGCGTGT-CCTGA
129 ATCTCACAATACGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATACCTCAGCGTGTACCTGA
*
73781792 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGA
194 AGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGA
* * * * **
73781846 AAATACCTCA--GCATG-TCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTTTT
1 AAATAGCTCAGCGCGTGAGC-TAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTTT
73781908 GAAAAACAGAAATTGAAAA
65 G-AAAACAGAAATTGAAAA
73781927 TACCTCAGCA
Statistics
Matches: 284, Mismatches: 32, Indels: 21
0.84 0.09 0.06
Matches are distributed among these distances:
242 1 0.00
243 57 0.20
244 53 0.19
245 65 0.23
247 15 0.05
249 20 0.07
250 70 0.25
251 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (247 bp):
AAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTTTG
AAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACAT
CTCACAATACGAGTTGATTTTTTTGAAAAACAGAAATTGAAAAATACCTCAGCGTGTACCTGAAG
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGA
Found at i:73781934 original size:78 final size:75
Alignment explanation
Indices: 73781677--73781979 Score: 385
Period size: 78 Copynumber: 4.0 Consensus size: 75
73781667 AAGGCAGAAA
* * *
73781677 TTGAAAAAC-GAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAG-AAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACCTCTCACAATA
*
73781741 CGAGTTGATTTTT
63 TGAGTTGATTTTT
* * * *
73781754 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
73781818 GTTGATTTTT
66 GTTGATTTTT
* **
73781828 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
73781893 GTTGATTTTTTTT
66 GTTGA---TTTTT
* * ** *
73781906 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
*
73781971 GCTGATTTT
66 GTTGATTTT
73781980 GAAAAAGTAG
Statistics
Matches: 205, Mismatches: 16, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
74 41 0.20
75 63 0.31
76 25 0.12
77 4 0.02
78 72 0.35
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTTT
Found at i:73782114 original size:140 final size:138
Alignment explanation
Indices: 73781909--73782273 Score: 455
Period size: 140 Copynumber: 2.6 Consensus size: 138
73781899 TTTTTTTTTG
* * ** * **
73781909 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGCT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGCT
73781974 GATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAAC
66 GATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA-T-TT-AAC
73782039 AACAT-AAATT
128 AACATGAAATT
* * *
73782049 GAAAACAGAAATTAAAAATACTTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGCT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGCT
* *****
73782114 GATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTTATTTTT
66 GATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTAACAAC
*
73782179 TTGAAATT
131 ATGAAATT
* * * * * *
73782187 AAAACACAAAAATTGACAATTCCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGT
1 AAAA-ACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGC
*
73782252 TGATTTTTGAAAAA-CAGAAATT
65 TGA-TTTTGAAAAAGTAGAAATT
73782274 GAAATTACCT
Statistics
Matches: 195, Mismatches: 27, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
137 2 0.01
138 10 0.05
139 63 0.32
140 120 0.62
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (138 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGCT
GATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTTAACAAC
ATGAAATT
Found at i:73782569 original size:86 final size:86
Alignment explanation
Indices: 73782423--73782757 Score: 329
Period size: 86 Copynumber: 4.0 Consensus size: 86
73782413 TTGACAATAG
* * *
73782423 AAATTG-CAATTACCTCAACATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGACAA-TACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
73782487 GAAAAACATAAATTGAAACACAA
65 GAAAAACAGAAATTGAAA-ACAA
73782510 AAATTGACAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGACAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
73782574 AAAAACAGAAATT--------
66 AAAAACAGAAATTGAAAACAA
* * * *
73782587 TAA---A-AATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGACAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TT
* ** *
73782648 TTTTACGAACAGAAATTGAAAAACAT
62 TTTGAAAAACAGAAATTG-AAAACAA
* * *
73782674 AAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGACAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* **
73782739 TGACAAATTGAAATTGAAA
64 TGAAAAACAGAAATTGAAA
73782758 TTACCTCAGC
Statistics
Matches: 208, Mismatches: 19, Indels: 41
0.78 0.07 0.15
Matches are distributed among these distances:
73 13 0.06
74 36 0.17
77 2 0.01
78 16 0.08
86 54 0.26
87 18 0.09
88 6 0.03
89 16 0.08
90 1 0.00
91 9 0.04
93 37 0.18
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (86 bp):
AAATTGACAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAACAGAAATTGAAAACAA
Found at i:73782867 original size:75 final size:73
Alignment explanation
Indices: 73782663--73782888 Score: 301
Period size: 75 Copynumber: 3.0 Consensus size: 73
73782653 CGAACAGAAA
* * *
73782663 TTGAAAAACATAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
73782727 TGAGTTGATTT
63 TGAGTTGATTT
* ** * * *
73782738 TTGACAAATTGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
73782803 GTTGATTTT
66 GTTGA-TTT
*
73782812 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
73782877 AGTTGACTTT
65 AGTTGA-TTT
73782887 TT
1 TT
73782889 TTTTTTTACG
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
72 2 0.02
73 35 0.27
74 14 0.11
75 81 0.61
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:73782918 original size:14 final size:14
Alignment explanation
Indices: 73782899--73782927 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
73782889 TTTTTTTACG
73782899 AACAGAAATTGAAA
1 AACAGAAATTGAAA
73782913 AACAGAAATTGAAA
1 AACAGAAATTGAAA
73782927 A
1 A
73782928 GACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:73782968 original size:244 final size:242
Alignment explanation
Indices: 73782510--73783128 Score: 1086
Period size: 244 Copynumber: 2.6 Consensus size: 242
73782500 TGAAACACAA
73782510 AAATTGACAA-TACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGA-AATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
73782573 GAAAAACAGAAATTTAAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
65 GAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
73782638 TTGA--TTTTTTTTTTACGAACAGAAATTGAAAAACATAAATTGAAAAGACCTCAGCATGTGAGC
130 TTGATTTTTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGC
* **
73782701 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAATTG
195 CGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAG
*
73782749 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
73782814 GAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
65 GAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
73782879 TTGACTTTTTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAG
130 TTGA-TTTTTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAG
73782944 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAG
194 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAG
73782993 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * * *
73783058 ACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGT
66 AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
73783122 TGATTTT
131 TGATTTT
73783129 GAAAAACAAA
Statistics
Matches: 363, Mismatches: 11, Indels: 10
0.95 0.03 0.03
Matches are distributed among these distances:
238 2 0.01
239 19 0.05
240 35 0.10
241 77 0.21
242 53 0.15
243 16 0.04
244 161 0.44
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (242 bp):
AAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTTTTTTACGAACAGAAATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCC
GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAG
Found at i:73783027 original size:169 final size:168
Alignment explanation
Indices: 73782748--73783199 Score: 515
Period size: 169 Copynumber: 2.8 Consensus size: 168
73782738 TTGACAAATT
** * * *
73782748 GAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTT
1 GAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
*
73782813 TGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
66 TGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
73782878 GTTGACTTTTTTTTTTTTACGAACAGAAATTGAAAAACA
131 GTTGA-TTTTTTTTTTTTACGAACAGAAATTGAAAAACA
*
73782917 GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATT
1 GAAATTGAAAAGACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT
* * *
73782981 TTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
64 TTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
* *
73783045 GAGTTGA------TTTTTGACAAACAGAAATT--------
129 GAGTTGATTTTTTTTTTTTACGAACAGAAATTGAAAAACA
* * *
73783071 GAAATT------ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-A-TTT
1 GAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
* * ** *
73783128 TGAAAAACA-AAAATT-AAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGA
66 TGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
73783191 GTTGATTTT
131 GTTGATTTT
73783200 CCTTGAAAAG
Statistics
Matches: 253, Mismatches: 22, Indels: 37
0.81 0.07 0.12
Matches are distributed among these distances:
144 51 0.20
145 13 0.05
146 35 0.14
148 8 0.03
154 6 0.02
162 17 0.07
169 71 0.28
170 17 0.07
171 35 0.14
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (168 bp):
GAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
TGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTTTTTTACGAACAGAAATTGAAAAACA
Found at i:73783185 original size:144 final size:147
Alignment explanation
Indices: 73782907--73783199 Score: 423
Period size: 144 Copynumber: 2.0 Consensus size: 147
73782897 CGAACAGAAA
*
73782907 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTAGCAATAT
* * * *
73782972 GAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCT
65 GAGTTAATTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCT
73783037 CGCAATATGAGTTGATTT
130 CGCAATATGAGTTGATTT
* ** *
73783055 TTGACAAACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTAGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTAGCAATAT
* ** *
73783118 GAGTTGA-TTTTGAAAAACAAAAATT-AAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCT
65 GAGTTAATTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCT
73783181 CGCAATATGAGTTGATTT
130 CGCAATATGAGTTGATTT
73783199 T
1 T
73783200 CCTTGAAAAG
Statistics
Matches: 131, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
144 52 0.40
145 18 0.14
146 34 0.26
148 27 0.21
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (147 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTAGCAATATG
AGTTAATTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTT
Found at i:73783186 original size:71 final size:73
Alignment explanation
Indices: 73782907--73783199 Score: 421
Period size: 73 Copynumber: 4.0 Consensus size: 73
73782897 CGAACAGAAA
* ** *
73782907 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGACAAACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
*
73782971 TGAGTTAATTT
63 TGAGTTGATTT
*
73782982 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
73783047 GTTGATTT
66 GTTGATTT
*
73783055 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
73783120 GTTGA-TT
66 GTTGATTT
* * * * * *
73783127 TTGAAAAACAAAAATT-AAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGA
1 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
73783191 GTTGATTT
66 GTTGATTT
73783199 T
1 T
73783200 CCTTGAAAAG
Statistics
Matches: 202, Mismatches: 14, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
71 48 0.24
72 21 0.10
73 106 0.52
75 27 0.13
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (73 bp):
TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:73793092 original size:16 final size:15
Alignment explanation
Indices: 73793071--73793118 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
73793061 GATGTGAATA
73793071 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
73793087 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
73793102 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
73793118 A
1 A
73793119 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:73793101 original size:8 final size:8
Alignment explanation
Indices: 73793067--73793118 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
73793057 CAATGATGTG
*
73793067 AATAATAA
1 AATATTAA
73793075 AATATATAA
1 AATAT-TAA
73793084 AATA-TAA
1 AATATTAA
73793091 AATATTAA
1 AATATTAA
*
73793099 AATATCAA
1 AATATTAA
*
73793107 AATATTAG
1 AATATTAA
73793115 AATA
1 AATA
73793119 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:73793118 original size:24 final size:24
Alignment explanation
Indices: 73793066--73793122 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
73793056 ACAATGATGT
*
73793066 GAATAATAAAATATATAAAATATA
1 GAATAATAAAATATACAAAATATA
* *
73793090 AAATATTAAAATAT-CAAAATATTA
1 GAATAATAAAATATACAAAATA-TA
73793114 GAATAATAA
1 GAATAATAA
73793123 TAATTAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (24 bp):
GAATAATAAAATATACAAAATATA
Found at i:73793337 original size:22 final size:24
Alignment explanation
Indices: 73793274--73793338 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
73793264 CGTGATAATA
*
73793274 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
73793299 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
73793322 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
73793339 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:73793391 original size:25 final size:25
Alignment explanation
Indices: 73793363--73793498 Score: 81
Period size: 25 Copynumber: 5.6 Consensus size: 25
73793353 AAAAATTTAT
73793363 ATATATAAATAATATAATATTAAAG
1 ATATATAAATAATATAATATTAAAG
* * * *
73793388 ATATATAAATAAAATAGTATAAAAT
1 ATATATAAATAATATAATATTAAAG
*
73793413 ATATATATATACGTAATATAGA-ATTTAA-
1 ATATATA-A-A--TAATATA-ATATTAAAG
** *
73793441 A-ATATACCTAATAT-AT-TAAAAG
1 ATATATAAATAATATAATATTAAAG
*
73793463 A-ATATATATAATATAATATT-AAG
1 ATATATAAATAATATAATATTAAAG
*
73793486 AAATAT-AATAATA
1 ATATATAAATAATA
73793499 ACAAAAAAAA
Statistics
Matches: 85, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
21 4 0.05
22 12 0.14
23 18 0.21
24 5 0.06
25 28 0.33
26 1 0.01
27 6 0.07
28 1 0.01
29 10 0.12
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATATAAATAATATAATATTAAAG
Found at i:73794060 original size:30 final size:30
Alignment explanation
Indices: 73794026--73794116 Score: 146
Period size: 30 Copynumber: 3.0 Consensus size: 30
73794016 AATAGAGCAA
* *
73794026 GTGTGGCTAGTGGATTTGGTGGTGGAAAAT
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
73794056 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
* *
73794086 GAGTGGCTAGTGGAGTTGATGGTGGAAAAG
1 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
73794116 G
1 G
73794117 CTAAGATTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.22, C:0.03, G:0.47, T:0.27
Consensus pattern (30 bp):
GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
Found at i:73794963 original size:47 final size:45
Alignment explanation
Indices: 73794844--73794970 Score: 150
Period size: 46 Copynumber: 2.8 Consensus size: 45
73794834 GGGATATTTG
* *
73794844 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GGATGCGA
* *
73794891 -GCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA-GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATG---CGA
*
73794937 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
73794971 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
43 4 0.06
45 2 0.03
46 33 0.47
47 31 0.44
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (45 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGCGA
Found at i:73806171 original size:40 final size:41
Alignment explanation
Indices: 73806145--73806378 Score: 302
Period size: 40 Copynumber: 5.9 Consensus size: 41
73806135 GCCCGGTCAC
*
73806145 AGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTT
1 AGTAACTCGCACAAATGCCTTCGGGATCTTAGCCCGGATTT
*
73806185 AGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTT
1 AGTAACTCGCACAAATGCCTTCGGGATCTTAGCCCGGATTT
* *
73806225 AGTAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGATTT
1 AGTAACTCGCACAAATGCCTTCGGGATCTTAGCCCGGATTT
* * *
73806265 AGTAACTCGCACGAATGCCTTC-GGATCTTGGTCCGGATTT
1 AGTAACTCGCACAAATGCCTTCGGGATCTTAGCCCGGATTT
* * *
73806305 AGTAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGATAT
1 AGTAACTCGCACAAATGCCTTCGGGATCTTAGCCCGGATTT
* *
73806345 AGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGCCC
1 AGTAAC-TCGCACAAATGCCTTCGGGATCTTAGCCC
73806379 AGACATCATT
Statistics
Matches: 181, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 3 0.02
40 168 0.93
41 10 0.06
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.27
Consensus pattern (41 bp):
AGTAACTCGCACAAATGCCTTCGGGATCTTAGCCCGGATTT
Found at i:73806229 original size:80 final size:80
Alignment explanation
Indices: 73806145--73806368 Score: 344
Period size: 80 Copynumber: 2.8 Consensus size: 80
73806135 GCCCGGTCAC
* **
73806145 AGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 AGTAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGG
73806209 ATCTTAGTCCGGATTT
65 ATCTTAGTCCGGATTT
*
73806225 AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACGAATGCCTTCGGA
1 AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGA
*
73806290 TCTTGGTCCGGATTT
66 TCTTAGTCCGGATTT
* * *
73806305 AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGG
1 AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCACAAATGCCTTCGG
73806369 GACTTAGCCC
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
79 3 0.02
80 123 0.92
81 7 0.05
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (80 bp):
AGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGA
TCTTAGTCCGGATTT
Found at i:73806375 original size:120 final size:120
Alignment explanation
Indices: 73806145--73806368 Score: 335
Period size: 120 Copynumber: 1.9 Consensus size: 120
73806135 GCCCGGTCAC
73806145 AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGA
1 AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGA
* * *
73806210 TCTTAGTCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATTT
66 TCTTAGTCCGGATATAGTAACTAGCACGAAAGCCTTCGGATCTTAGTCCGGATTT
* *** *
73806265 AGTAACTCGCACGAATGCCTTC-GGATCTTGGTCCGGATTTAGTAACTCGCACGAATGCCTTCGG
1 AGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG
*
73806329 ATCTTAGTCCGGATATAGTCACTTAGCAC-AAAGCCTTCGG
65 ATCTTAGTCCGGATATAGTAAC-TAGCACGAAAGCCTTCGG
73806369 GACTTAGCCC
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
119 3 0.03
120 85 0.91
121 5 0.05
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (120 bp):
AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGA
TCTTAGTCCGGATATAGTAACTAGCACGAAAGCCTTCGGATCTTAGTCCGGATTT
Found at i:73808281 original size:43 final size:44
Alignment explanation
Indices: 73808228--73808338 Score: 118
Period size: 43 Copynumber: 2.5 Consensus size: 44
73808218 GGTGTGGATT
* * * *
73808228 AACCATTCATTGGTGCATATAAAAGCT-ACTAATATG-GTGAATA
1 AACCACTCATTGGTGCAGATAAAACCTGA-TAATACGAGTGAATA
* * *
73808271 AACCACTCATTGTTGCAGATATAACCTGATAATACGATGTGGATA
1 AACCACTCATTGGTGCAGATAAAACCTGATAATACGA-GTGAATA
*
73808316 AACCACTCAATGGTGCAGATAAA
1 AACCACTCATTGGTGCAGATAAA
73808339 CTGCTCACAC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
43 28 0.51
44 1 0.02
45 26 0.47
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (44 bp):
AACCACTCATTGGTGCAGATAAAACCTGATAATACGAGTGAATA
Found at i:73810347 original size:16 final size:17
Alignment explanation
Indices: 73810314--73810352 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
73810304 CTTTTTTTTG
*
73810314 TTTTTTATTGTTAAATA
1 TTTTTTATTATTAAATA
*
73810331 TTTTTTATTATT-TATA
1 TTTTTTATTATTAAATA
73810347 TTTTTT
1 TTTTTT
73810353 TACTGAGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTTTTATTATTAAATA
Found at i:73813956 original size:20 final size:18
Alignment explanation
Indices: 73813927--73813977 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
73813917 TAATTTGTTT
*
73813927 CATGCGAACCCTAGATTAAA
1 CATGCAAACCCTAGATT--A
* *
73813947 CATGCAAACCTTAGGTTA
1 CATGCAAACCCTAGATTA
73813965 CATGCAAACCCTA
1 CATGCAAACCCTA
73813978 TATATGTTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 13 0.48
20 14 0.52
ACGTcount: A:0.37, C:0.27, G:0.14, T:0.22
Consensus pattern (18 bp):
CATGCAAACCCTAGATTA
Found at i:73814025 original size:22 final size:22
Alignment explanation
Indices: 73813976--73814036 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
73813966 ATGCAAACCC
*
73813976 TATATATGTTACATATGAATTCTA
1 TATATATGTT--ATATGAATCCTA
73814000 TATATATGTTATATGAAATCCT-
1 TATATATGTTATATG-AATCCTA
* *
73814022 TATATAGGATATATG
1 TATATATGTTATATG
73814037 TGAACCACTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 18 0.55
23 5 0.15
24 10 0.30
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.44
Consensus pattern (22 bp):
TATATATGTTATATGAATCCTA
Found at i:73814025 original size:24 final size:23
Alignment explanation
Indices: 73813976--73814027 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
73813966 ATGCAAACCC
*
73813976 TATATATGTTACATATGAATTCTA
1 TATATATGTTA-ATATGAATCCTA
73814000 TATATATGTT-ATATGAAATCCT-
1 TATATATGTTAATATG-AATCCTA
73814022 TATATA
1 TATATA
73814028 GGATATATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 11 0.42
23 5 0.19
24 10 0.38
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (23 bp):
TATATATGTTAATATGAATCCTA
Found at i:73814999 original size:26 final size:26
Alignment explanation
Indices: 73814970--73815077 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
73814960 TGGTACAAAT
73814970 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
73814996 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
73815022 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
73815048 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
73815074 TGAT
1 TGAT
73815078 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 75 0.97
27 2 0.03
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:73825468 original size:23 final size:24
Alignment explanation
Indices: 73825441--73825487 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
73825431 CATGGATCAA
*
73825441 AGTTGT-AAATTAAATCTTTAAAC
1 AGTTGTGAAATTAAATCCTTAAAC
**
73825464 AGTTGTGTCATTAAATCCTTAAAC
1 AGTTGTGAAATTAAATCCTTAAAC
73825488 CTGAAATCAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (24 bp):
AGTTGTGAAATTAAATCCTTAAAC
Found at i:73832413 original size:40 final size:40
Alignment explanation
Indices: 73832353--73832450 Score: 169
Period size: 40 Copynumber: 2.5 Consensus size: 40
73832343 CGGAAGTTTT
*
73832353 GGCACTAAGTGTGCGATTTAAATTAGCTTCGGCTACTTGA
1 GGCACTAAGTGTGCGATTTAAACTAGCTTCGGCTACTTGA
* *
73832393 GGCACTAAGTGTGTGCTTTAAACTAGCTTCGGCTACTTGA
1 GGCACTAAGTGTGCGATTTAAACTAGCTTCGGCTACTTGA
73832433 GGCACTAAGTGTGCGATT
1 GGCACTAAGTGTGCGATT
73832451 CTGACTTAGT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (40 bp):
GGCACTAAGTGTGCGATTTAAACTAGCTTCGGCTACTTGA
Found at i:73837908 original size:73 final size:73
Alignment explanation
Indices: 73837789--73837933 Score: 211
Period size: 73 Copynumber: 2.0 Consensus size: 73
73837779 AACAATAGAT
*
73837789 AAATAAAAGAGACTTGATAGAGTTCAAAATGTTGATGTACAAAGGATCTCGCAACCTAACATAAT
1 AAATAAAAGAGACTTCATAGAGTTCAAAATGTTGATGTACAAAGGATCTCGCAACCTAACATAAT
73837854 GGTTAAGA
66 GGTTAAGA
* ** * * *
73837862 AAAT-AAAGAAGACTTCATAGATTTTGAAATGTTGATGTCCAAAGGATCTTGCAACCTAACATAC
1 AAATAAAAG-AGACTTCATAGAGTTCAAAATGTTGATGTACAAAGGATCTCGCAACCTAACATAA
73837926 TGGTTAAG
65 TGGTTAAG
73837934 TCAGGTAAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
72 4 0.06
73 60 0.94
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (73 bp):
AAATAAAAGAGACTTCATAGAGTTCAAAATGTTGATGTACAAAGGATCTCGCAACCTAACATAAT
GGTTAAGA
Found at i:73840686 original size:22 final size:21
Alignment explanation
Indices: 73840650--73840692 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
73840640 GAAAGTAAAA
* *
73840650 TTTAATTAATTTATATAATAT
1 TTTAATTAATATATAAAATAT
73840671 TTTAATATAATATATAAAATAT
1 TTTAAT-TAATATATAAAATAT
73840693 AAATTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTTAATTAATATATAAAATAT
Found at i:73840705 original size:13 final size:14
Alignment explanation
Indices: 73840662--73840705 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 14
73840652 TAATTAATTT
73840662 ATATAATATTTT-A
1 ATATAATATTTTAA
* *
73840675 ATATAATATATAAA
1 ATATAATATTTTAA
73840689 ATATAA-ATTTTAA
1 ATATAATATTTTAA
73840702 ATAT
1 ATAT
73840706 CATTTAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 19 0.73
14 7 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATATAATATTTTAA
Found at i:73843240 original size:30 final size:29
Alignment explanation
Indices: 73843183--73843240 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
73843173 CTCATCAATA
* **
73843183 TTCAATTTCCACATACATGTATTTATCAC
1 TTCAATTTCCACAAACATGTACATATCAC
*
73843212 TTCAATTGTCCATAAACATGTACATATCA
1 TTCAATT-TCCACAAACATGTACATATCA
73843241 TATCTTTGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.34, C:0.22, G:0.05, T:0.38
Consensus pattern (29 bp):
TTCAATTTCCACAAACATGTACATATCAC
Found at i:73843447 original size:27 final size:27
Alignment explanation
Indices: 73843407--73843532 Score: 107
Period size: 27 Copynumber: 4.8 Consensus size: 27
73843397 AATGCTCATA
73843407 CGAGCACATA-AACGGGAAGCTCTCTCT
1 CGAGC-CATATAACGGGAAGCTCTCTCT
* *
73843434 CGAGCCATATAACGAGAAACTCTCTCT
1 CGAGCCATATAACGGGAAGCTCTCTCT
* * * *
73843461 TGAGCCATATAATGAGAAACTCTCTCT
1 CGAGCCATATAACGGGAAGCTCTCTCT
* * * * *
73843488 TGAGCAATATAACAGAAAG--CTCTGT
1 CGAGCCATATAACGGGAAGCTCTCTCT
*
73843513 -GAGCCATGTAACGGGAAGCT
1 CGAGCCATATAACGGGAAGCT
73843533 TATCTGGGCT
Statistics
Matches: 81, Mismatches: 15, Indels: 7
0.79 0.15 0.07
Matches are distributed among these distances:
24 14 0.17
25 5 0.06
26 4 0.05
27 58 0.72
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (27 bp):
CGAGCCATATAACGGGAAGCTCTCTCT
Found at i:73843483 original size:25 final size:26
Alignment explanation
Indices: 73843428--73843525 Score: 110
Period size: 27 Copynumber: 3.8 Consensus size: 26
73843418 ACGGGAAGCT
*
73843428 CTCTCTCGAGCCATATAACGAGAAAC
1 CTCTCTTGAGCCATATAACGAGAAAC
*
73843454 TCTCTCTTGAGCCATATAATGAGAAAC
1 -CTCTCTTGAGCCATATAACGAGAAAC
* *
73843481 TCTCTCTTGAGCAATATAAC-AGAAAG
1 -CTCTCTTGAGCCATATAACGAGAAAC
* *
73843507 CTCT-GTGAGCCATGTAACG
1 CTCTCTTGAGCCATATAACG
73843526 GGAAGCTTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
24 11 0.18
25 4 0.06
26 5 0.08
27 42 0.68
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (26 bp):
CTCTCTTGAGCCATATAACGAGAAAC
Found at i:73845915 original size:47 final size:47
Alignment explanation
Indices: 73845844--73846066 Score: 147
Period size: 47 Copynumber: 4.8 Consensus size: 47
73845834 GGTAAGGTGC
* * *
73845844 CGATGCCATATCCTAGACACGGTCTTACATTGGCTCATATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCATATCTCAAGT
* ** *
73845891 TGATGCCATGTCCCAGACATGGTCTTACACTAAT-TATCATATCGT--AGC
1 CGATGCCATGTCCCAGACATGGTCTTACA-T--TGGCTCATATC-TCAAGT
* * ** *
73845939 CGATG-CATGTCTCAGACAT-GTCTTACATTGGCTTACGTCTCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCATATCTC-AAGT
* * * * *
73845985 CGATG-CATGTCCCAGACAT-GTCTTACACTAGC-CCTCGTCTCAATGG
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCAT-ATCTCAA-GT
* * *
73846031 AGATGCCATGCCCCAGACATGGTCTTACACTGGCTC
1 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTC
73846067 TCATAATGTG
Statistics
Matches: 136, Mismatches: 27, Indels: 24
0.73 0.14 0.13
Matches are distributed among these distances:
43 2 0.01
44 4 0.03
45 2 0.01
46 48 0.35
47 51 0.38
48 19 0.14
49 8 0.06
50 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCATATCTCAAGT
Found at i:73846024 original size:46 final size:45
Alignment explanation
Indices: 73845892--73846106 Score: 155
Period size: 46 Copynumber: 4.6 Consensus size: 45
73845882 ATCTCAAGTT
**** * * *
73845892 GATGCCATGTCCCAGACATGGTCTTACACTAATTATCATATCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCTCG-AGGC
* * * *
73845940 GATGCATGTCTCAGACATGTCTTACA-TTGGCTTACGTCTCGAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCCCT-CGTCTCGAGG-C
* *
73845986 GATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGGA
1 GATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCGA-GGC
* * * * * *
73846032 GATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCGT-CTCGAGGC
73846079 TGATGCATGTCCCAGACATGTCTTACAC
1 -GATGCATGTCCCAGACATGTCTTACAC
73846107 CAGCTCACAC
Statistics
Matches: 135, Mismatches: 24, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
45 4 0.03
46 59 0.44
47 47 0.35
48 24 0.18
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCGAGGC
Found at i:73849889 original size:99 final size:99
Alignment explanation
Indices: 73849714--73849912 Score: 346
Period size: 99 Copynumber: 2.0 Consensus size: 99
73849704 CTCAGTACAT
* *
73849714 AATTCACATAGATACTTTCACACAAATAAGGGTCTAAGTAGTGCTTGTCGACCCTACGGAAGGTT
1 AATTCACATAGATACTTTCACACAAATAAGGGTCTAAGTAGTGCTTCTCGACCCTACGAAAGGTT
* *
73849779 CACAGTTGACTTGGGCGACCCGTGCAACCTTAAC
66 CACAGTCGACTTGGGCAACCCGTGCAACCTTAAC
73849813 AATTCACATAGATACTTTCACACAAATAAGGGTCTAAGTAGTGCTTACT-GACCCTACGAAAGGT
1 AATTCACATAGATACTTTCACACAAATAAGGGTCTAAGTAGTGCTT-CTCGACCCTACGAAAGGT
73849877 TCACAGTCGACTTGGGCAACCCGTGCAACCTTAAC
65 TCACAGTCGACTTGGGCAACCCGTGCAACCTTAAC
73849912 A
1 A
73849913 GTCACTTCCG
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
99 94 0.99
100 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (99 bp):
AATTCACATAGATACTTTCACACAAATAAGGGTCTAAGTAGTGCTTCTCGACCCTACGAAAGGTT
CACAGTCGACTTGGGCAACCCGTGCAACCTTAAC
Found at i:73853524 original size:17 final size:18
Alignment explanation
Indices: 73853502--73853535 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73853492 CTATCCTCGG
73853502 TAATGGAT-ACTTGTTCT
1 TAATGGATAACTTGTTCT
*
73853519 TAATGGTTAACTTGTTC
1 TAATGGATAACTTGTTC
73853536 AGTTGCCGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.47
Consensus pattern (18 bp):
TAATGGATAACTTGTTCT
Found at i:73854563 original size:14 final size:14
Alignment explanation
Indices: 73854544--73854571 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73854534 TAATGCGATG
73854544 TTCCAACGACCCAC
1 TTCCAACGACCCAC
73854558 TTCCAACGACCCAC
1 TTCCAACGACCCAC
73854572 ATCTCAAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.50, G:0.07, T:0.14
Consensus pattern (14 bp):
TTCCAACGACCCAC
Found at i:73860994 original size:15 final size:15
Alignment explanation
Indices: 73860974--73861015 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
73860964 GTTTGATAAA
73860974 CTGAAAAATTAAATG
1 CTGAAAAATTAAATG
**
73860989 CTGAAAAAAGAAATG
1 CTGAAAAATTAAATG
*
73861004 TTGAAAAATTAA
1 CTGAAAAATTAA
73861016 GTATTGAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.57, C:0.05, G:0.14, T:0.24
Consensus pattern (15 bp):
CTGAAAAATTAAATG
Found at i:73861025 original size:14 final size:15
Alignment explanation
Indices: 73861004--73861038 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
73860994 AAAAGAAATG
*
73861004 TTGAAAAATTAAGTA
1 TTGAAAATTTAAGTA
73861019 TTGAAAATTTAAGTA
1 TTGAAAATTTAAGTA
73861034 TTGAA
1 TTGAA
73861039 TTTAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (15 bp):
TTGAAAATTTAAGTA
Found at i:73864931 original size:9 final size:9
Alignment explanation
Indices: 73864917--73864966 Score: 73
Period size: 9 Copynumber: 5.6 Consensus size: 9
73864907 ATAAGTACAA
73864917 AATTAACCG
1 AATTAACCG
*
73864926 AATTAATCG
1 AATTAACCG
*
73864935 AATTAAACG
1 AATTAACCG
*
73864944 AATTACCCG
1 AATTAACCG
73864953 AATTAACCG
1 AATTAACCG
73864962 AATTA
1 AATTA
73864967 TTTGTATAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.46, C:0.18, G:0.10, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:73865001 original size:5 final size:6
Alignment explanation
Indices: 73864986--73865026 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
73864976 AATTATATGC
*
73864986 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
73865027 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:73871906 original size:9 final size:9
Alignment explanation
Indices: 73871889--73871925 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
73871879 TGAGTTTTCG
73871889 AATTCGAAT
1 AATTCGAAT
*
73871898 AACTCGAAT
1 AATTCGAAT
73871907 AATTCGAAT
1 AATTCGAAT
73871916 AATTCGAAT
1 AATTCGAAT
73871925 A
1 A
73871926 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:73875268 original size:20 final size:20
Alignment explanation
Indices: 73875230--73875268 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
73875220 CATAGGGGCA
**
73875230 AAATGGTCATTTTGTCAAAC
1 AAATGGTCATTTTACCAAAC
73875250 AAATGGTCATTTTACCAAA
1 AAATGGTCATTTTACCAAA
73875269 GACGTGAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (20 bp):
AAATGGTCATTTTACCAAAC
Found at i:73875676 original size:47 final size:48
Alignment explanation
Indices: 73875594--73875856 Score: 208
Period size: 47 Copynumber: 5.6 Consensus size: 48
73875584 TTTGTGCACT
* * * *
73875594 AGTGTAAGACGTGTCTGGGACAT-GCTTCAGCCACAG-TATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCAGACACAGAGATGAGAGCC
* *
73875640 AGTGTAAGACCATGTTTGGGACATGGCATC-GACACAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCAGACACAGAGATGAGAGCC
* * * * * * *
73875688 AGTGTAAGACATGTCTGGGACAT-GTATCGGCCTC-GACAAGGATAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCAGACACAGA-GATGAGAGCC
* * * *
73875735 AGAGTAAGACATGTCTGGGACAT-GCATCAG-CTA-AGAG-T-TGTGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCAGAC-ACAGAGATGAGAGCC
* *
73875779 AGTGTAAGACATGTCTGGGACAT-GCATCAG-CACGCGTATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCAGACAC-AG-AGATGAGAGCC
*
73875827 AGTGTAAAACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACATGGCATC
73875857 GGTAATATAA
Statistics
Matches: 172, Mismatches: 31, Indels: 24
0.76 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 32 0.19
45 1 0.01
46 17 0.10
47 70 0.41
48 32 0.19
49 14 0.08
50 5 0.03
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGGCATCAGACACAGAGATGAGAGCC
Found at i:73882322 original size:20 final size:20
Alignment explanation
Indices: 73882284--73882322 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
73882274 CATAGGGGCA
**
73882284 AAATGGTCATTTTGTCAAAC
1 AAATGGTCATTTTACCAAAC
73882304 AAATGGTCATTTTACCAAA
1 AAATGGTCATTTTACCAAA
73882323 GACGTGAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (20 bp):
AAATGGTCATTTTACCAAAC
Found at i:73882773 original size:47 final size:46
Alignment explanation
Indices: 73882663--73882929 Score: 179
Period size: 47 Copynumber: 5.7 Consensus size: 46
73882653 TGATTTGTGC
* * * * *
73882663 GCCAGTATAAGACGTGTCTGGGACATGCTTCGGCTACAG-TATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGAGATGAGT
*
73882709 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAGAGATGAGT
* * * * ** *
73882757 GCCAGTGTAAGACATGTTTGGGATACGCATTGGC-C-TCGATAGGGAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAGAGAT-GAG-T
* * * *
73882803 AGCCAGAGTAAGACGTGTCTGGGACACGCATCGGCTA-AGAG-T-TGT
1 -GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGAGATGAGT
* ** * * *
73882848 GCTAGTGTAAGACATGTCTGGGACATGCATCAACACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-AG-AGATGAGT
73882896 GCCAGTGTAAGACCATGTCT-GGACATGGCATCGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
73882930 AAATATAACC
Statistics
Matches: 172, Mismatches: 33, Indels: 29
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.01
44 31 0.18
45 5 0.03
46 21 0.12
47 58 0.34
48 43 0.25
49 13 0.08
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAGAGATGAGT
Found at i:73887502 original size:28 final size:28
Alignment explanation
Indices: 73887437--73887537 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
73887427 ATAGTGAATC
*
73887437 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
73887466 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73887494 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
73887524 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73887538 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73895458 original size:28 final size:28
Alignment explanation
Indices: 73895393--73895493 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
73895383 ATAGTGAATC
*
73895393 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
73895422 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73895450 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
73895480 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73895494 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73899770 original size:28 final size:28
Alignment explanation
Indices: 73899705--73899805 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
73899695 ATAGTGAATC
*
73899705 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
73899734 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73899762 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
73899792 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73899806 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73903214 original size:48 final size:48
Alignment explanation
Indices: 73903159--73903254 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
73903149 TAAAGGTGTT
73903159 AAATAGCTATGTTTTATTAAAGTTAAGGTCCTTATGATGATATTAGAC
1 AAATAGCTATGTTTTATTAAAGTTAAGGTCCTTATGATGATATTAGAC
73903207 AAATAGCTATGTTTTATTAAAGTTAAGGTCCTTATGATGATATTAGAC
1 AAATAGCTATGTTTTATTAAAGTTAAGGTCCTTATGATGATATTAGAC
73903255 CATTTTAAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (48 bp):
AAATAGCTATGTTTTATTAAAGTTAAGGTCCTTATGATGATATTAGAC
Found at i:73906446 original size:28 final size:28
Alignment explanation
Indices: 73906410--73906523 Score: 102
Period size: 28 Copynumber: 4.0 Consensus size: 28
73906400 GTGAGCATGA
* * *
73906410 ATATCAATGTAACTGGGCCTAATGGGGC
1 ATATAAATGTAATTGGGCCTAATGGGCC
*
73906438 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGT-AATTGGGCCTAATGGGCC
* * * *
73906467 ATATATAGGTGATTGGGCCTAATGGGCT
1 ATATAAATGTAATTGGGCCTAATGGGCC
* * * * *
73906495 ATATGAATATGATTGGGCTTAGTGGGCC
1 ATATAAATGTAATTGGGCCTAATGGGCC
73906523 A
1 A
73906524 GATACAGGTA
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
28 46 0.67
29 23 0.33
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.30
Consensus pattern (28 bp):
ATATAAATGTAATTGGGCCTAATGGGCC
Found at i:73906460 original size:29 final size:28
Alignment explanation
Indices: 73906423--73906532 Score: 112
Period size: 28 Copynumber: 3.9 Consensus size: 28
73906413 TCAATGTAAC
* *
73906423 TGGGCCTAATGGGGCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGA-T
*
73906452 TGGGCCTAATGGGCCATATATAGGTGAT
1 TGGGCCTAATGGGCCATATAAAGGTGAT
* * **
73906480 TGGGCCTAATGGGCTATATGAATATGAT
1 TGGGCCTAATGGGCCATATAAAGGTGAT
* * * *
73906508 TGGGCTTAGTGGGCCAGATACAGGT
1 TGGGCCTAATGGGCCATATAAAGGT
73906533 ATGTGAAATT
Statistics
Matches: 65, Mismatches: 16, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
28 41 0.63
29 24 0.37
ACGTcount: A:0.25, C:0.13, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGGCCTAATGGGCCATATAAAGGTGAT
Found at i:73911599 original size:124 final size:122
Alignment explanation
Indices: 73911379--73911600 Score: 293
Period size: 124 Copynumber: 1.8 Consensus size: 122
73911369 GAATTATGTG
* * * *
73911379 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
73911444 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTCGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTCGAGCCTTAGTAACGA
* * *
73911501 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
73911565 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
73911601 TCCGGGTTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 16 0.19
124 65 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTCGAGCCTTAGTAACGA
Found at i:73911644 original size:40 final size:40
Alignment explanation
Indices: 73911559--73911709 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
73911549 AATTGAATGA
* * * *
73911559 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
73911599 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
73911640 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
73911679 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
73911710 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:73911723 original size:40 final size:40
Alignment explanation
Indices: 73911596--73911725 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
73911586 ATGCTGGAAA
* * *
73911596 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
73911636 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
73911676 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
73911716 TTATATCCGG
1 TTATATCCGG
73911726 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:73911724 original size:80 final size:80
Alignment explanation
Indices: 73911558--73911725 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
73911548 AAATTGAATG
* *
73911558 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
73911623 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
73911638 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
73911701 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
73911718 ATATCCGG
1 ATATCCGG
73911726 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:73915897 original size:37 final size:37
Alignment explanation
Indices: 73915844--73915934 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
73915834 TATAAAAGAA
*
73915844 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAAGCTCCACACGTAGTCATCGG
*
73915881 GTCTTACCCGGTCATAAGCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAAGCTCCACACGTAGTCATCGG
*
73915918 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
73915935 TTCCAAGTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 45 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAAGCTCCACACGTAGTCATCGG
Found at i:73916090 original size:49 final size:49
Alignment explanation
Indices: 73916030--73916146 Score: 180
Period size: 49 Copynumber: 2.4 Consensus size: 49
73916020 TTTTACATTA
*
73916030 GCCAGTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * *
73916079 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
73916128 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
73916147 CATATATGTA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 61 1.00
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.28
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:73918482 original size:40 final size:39
Alignment explanation
Indices: 73918424--73918500 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 39
73918414 ACTTAATTCA
* * * *
73918424 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCT-AACCCAGATACAATC
*
73918464 CCAGCATGAAGCCAGCGGGTCTCTAACCCAGATACAA
1 CCAGCATGAAGCCAGCGGGACTCTAACCCAGATACAA
73918501 ACTCCGCACA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
39 12 0.38
40 20 0.62
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.17
Consensus pattern (39 bp):
CCAGCATGAAGCCAGCGGGACTCTAACCCAGATACAATC
Found at i:73918711 original size:47 final size:46
Alignment explanation
Indices: 73918581--73918736 Score: 134
Period size: 47 Copynumber: 3.3 Consensus size: 46
73918571 TGCACACTTT
* * * *
73918581 TCACAATTGGTCATTCGGCCTTGTCACATAT-TCACTTACACATATA
1 TCAC-ATTGGCCATTCGGCCTTATCACATATAACACTTACACATACA
** * * * * * *
73918627 TCACATTAACAATCCGGCCTTATCACATGTATGCACTTCCACATCCA
1 TCACATTGGCCATTCGGCCTTATCACATATA-ACACTTACACATACA
* *
73918674 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATA-ACACTTACACATACA
**
73918721 TCATGTTGGCCATTCG
1 TCACATTGGCCATTCG
73918737 ATCTTAAGCC
Statistics
Matches: 86, Mismatches: 22, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
45 19 0.22
46 4 0.05
47 63 0.73
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATAACACTTACACATACA
Found at i:73922603 original size:40 final size:40
Alignment explanation
Indices: 73922555--73922874 Score: 496
Period size: 40 Copynumber: 8.0 Consensus size: 40
73922545 CCGAATACAC
* *
73922555 ATCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * *
73922595 AACACCAGCACGAATGCTCTTCGGGACTTAGCCCTGTTAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * *
73922635 AACTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
73922675 AACACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
73922715 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
73922755 ATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
73922795 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* *
73922835 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
73922875 CTAACTCTCA
Statistics
Matches: 262, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 262 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:73939541 original size:47 final size:47
Alignment explanation
Indices: 73939392--73939545 Score: 152
Period size: 47 Copynumber: 3.3 Consensus size: 47
73939382 TGCACACTTT
* * * * *
73939392 TCACAATTGGTCATTCTGCCTTGTCACATAT--TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACACTTCCACAT-TCA
** * * **
73939438 TCACATTAACCATCCGGCCTTATCACATGTATGCACTTCCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTCCACATTCA
*
73939485 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATACACACTTCCACATTCA
*
73939532 TCACGTTGGCCATT
1 TCACATTGGCCATT
73939546 TGATCTTAAG
Statistics
Matches: 88, Mismatches: 17, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
45 19 0.22
46 5 0.06
47 64 0.73
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACACTTCCACATTCA
Found at i:73942868 original size:28 final size:29
Alignment explanation
Indices: 73942832--73942893 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
73942822 GTGAGCATGA
*
73942832 ATATGAATGT-AACTGGGCCTAACAGGCC
1 ATATAAATGTGAACTGGGCCTAACAGGCC
** **
73942860 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGAACTGGGCCTAACAGGCC
73942889 ATATA
1 ATATA
73942894 TAGTTGATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 9 0.32
29 19 0.68
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27
Consensus pattern (29 bp):
ATATAAATGTGAACTGGGCCTAACAGGCC
Found at i:73942882 original size:29 final size:29
Alignment explanation
Indices: 73942845--73942935 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 29
73942835 TGAATGTAAC
**
73942845 TGGGCCTAACAGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
73942874 TGGGCCTAATGGGCCATATATA-GTTGATT
1 TGGGCCTAATGGGCCATATAAATG-TGATT
* *
73942903 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
73942931 TGGGC
1 TGGGC
73942936 TTAGTGGTCC
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
28 7 0.13
29 47 0.87
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:73957354 original size:18 final size:18
Alignment explanation
Indices: 73957331--73957366 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
73957321 AAATTCCATG
73957331 TTCATATATTACCATCTC
1 TTCATATATTACCATCTC
*
73957349 TTCATATATTATCATCTC
1 TTCATATATTACCATCTC
73957367 GTATTTCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (18 bp):
TTCATATATTACCATCTC
Found at i:73960524 original size:20 final size:18
Alignment explanation
Indices: 73960377--73960525 Score: 59
Period size: 17 Copynumber: 8.5 Consensus size: 18
73960367 ACTATGATTA
73960377 AAATTAATCATTTTAATATT
1 AAATTAAT-A-TTTAATATT
73960397 AAATTAATA--TAATATT
1 AAATTAATATTTAATATT
* * * *
73960413 -TATCAAGA-TAAATATT
1 AAATTAATATTTAATATT
* *
73960429 AGATTAA-ATTTCATATT
1 AAATTAATATTTAATATT
* *
73960446 AAATT-TTA-TTAA-AAT
1 AAATTAATATTTAATATT
* * *
73960461 -AATAGAATGTTTAAACATT
1 AAAT-TAATATTT-AATATT
73960480 AAATTAA-ATTTAATATT
1 AAATTAATATTTAATATT
73960497 AAGA-TAATCACTTTAATATT
1 AA-ATTAAT-A-TTTAATATT
73960517 AAATTAATA
1 AAATTAATA
73960526 AAATACTATT
Statistics
Matches: 95, Mismatches: 19, Indels: 31
0.66 0.13 0.21
Matches are distributed among these distances:
14 3 0.03
15 7 0.07
16 18 0.19
17 27 0.28
18 6 0.06
19 8 0.08
20 26 0.27
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (18 bp):
AAATTAATATTTAATATT
Found at i:73961581 original size:26 final size:26
Alignment explanation
Indices: 73961549--73961656 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
73961539 TGATACAAAT
73961549 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
73961575 TGGTAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
73961601 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
73961627 TAATAATGGGTTAGGTAAATGTTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
73961653 TGAT
1 TGAT
73961657 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.31, C:0.05, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:73964901 original size:36 final size:36
Alignment explanation
Indices: 73964861--73964935 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
73964851 ATCACAGCAT
73964861 GAACGTCACAAGTGAATTAATTCACAACTAGATTCA
1 GAACGTCACAAGTGAATTAATTCACAACTAGATTCA
73964897 GAACGTCACAAGTGAATTAATTCACAACTAGATTCA
1 GAACGTCACAAGTGAATTAATTCACAACTAGATTCA
73964933 GAA
1 GAA
73964936 TTAATTAATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.24
Consensus pattern (36 bp):
GAACGTCACAAGTGAATTAATTCACAACTAGATTCA
Found at i:73965276 original size:16 final size:16
Alignment explanation
Indices: 73965255--73965285 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73965245 CTATACATAC
*
73965255 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
73965271 AAAATACAAAAGACA
1 AAAATACAAAAGACA
73965286 TAACAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:73970328 original size:2 final size:2
Alignment explanation
Indices: 73970321--73970362 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
73970311 AGATCATCTC
73970321 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73970363 CACAATTATG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73971339 original size:16 final size:16
Alignment explanation
Indices: 73971318--73971389 Score: 65
Period size: 16 Copynumber: 4.4 Consensus size: 16
73971308 TATGATTAAC
*
73971318 TTAAATCACTTTAATA
1 TTAAATCAATTTAATA
* *
73971334 TTAAATTAATATAATA
1 TTAAATCAATTTAATA
*
73971350 TT-AATCAATATAAATA
1 TTAAATCAAT-TTAATA
* *
73971366 TTAGATTAAATTTAATA
1 TTA-AATCAATTTAATA
73971383 TTAAATC
1 TTAAATC
73971390 TTATTAAAAT
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
15 6 0.14
16 23 0.55
17 8 0.19
18 5 0.12
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.43
Consensus pattern (16 bp):
TTAAATCAATTTAATA
Found at i:73971468 original size:37 final size:35
Alignment explanation
Indices: 73971427--73971533 Score: 92
Period size: 37 Copynumber: 2.9 Consensus size: 35
73971417 TAAGATGAAC
73971427 ATTAAATTTAATTTAATATTAAGATAATCACTTTAAT
1 ATTAAATTTAATTTAATATTAAGATAAT-A-TTTAAT
** *
73971464 ATTAAATTAATAAAATATTATTAAGATAAATATTTAAT
1 ATTAAATT--TAATTTAATATTAAGAT-AATATTTAAT
*
73971502 -TT-AATTTAATATTAAATTATTAAAATAATATT
1 ATTAAATTTAAT-TT-AA-TATTAAGATAATATT
73971534 ATTTTTGAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
34 3 0.05
35 1 0.02
36 11 0.19
37 18 0.32
38 6 0.11
39 15 0.26
40 3 0.05
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (35 bp):
ATTAAATTTAATTTAATATTAAGATAATATTTAAT
Found at i:73973164 original size:16 final size:16
Alignment explanation
Indices: 73973143--73973176 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
73973133 CTATGCATGC
*
73973143 AAAATATAAAAGATAT
1 AAAATACAAAAGATAT
73973159 AAAATACAAAAGATAT
1 AAAATACAAAAGATAT
73973175 AA
1 AA
73973177 CAGTGAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.21
Consensus pattern (16 bp):
AAAATACAAAAGATAT
Found at i:73976857 original size:103 final size:103
Alignment explanation
Indices: 73976678--73976983 Score: 400
Period size: 103 Copynumber: 3.0 Consensus size: 103
73976668 AATTATTAAG
* * **
73976678 GTTAGAAGAGTTAAGCGCGCAACTCCCAGACAGCTAGCGGACCTATGGTCCCAGTTGATTATTAA
1 GTTAGAAGAGTTAAGCTCGCAACTCCCAGACAGCTAGCGGACCTATGCTCCCAACTGATTATTAA
* *
73976743 GGTTAGAAGAGTTAAGCTTGCAAGCTCTGATCTTTTGA
66 GGTTAGTAGAGTTAAGCTTGCAACCTCTGATCTTTTGA
* * * * * * * *
73976781 GTTAGAAGAGTTAAGCTCGTAACTTCTAAACAACTAGTGGACCTACGCTCCTAACTGATTATTAA
1 GTTAGAAGAGTTAAGCTCGCAACTCCCAGACAGCTAGCGGACCTATGCTCCCAACTGATTATTAA
*
73976846 TGTTAGTAGAGTTAAGCTTGCAACCTCT-AGTCTTTTGA
66 GGTTAGTAGAGTTAAGCTTGCAACCTCTGA-TCTTTTGA
* *
73976884 GTTAGCAA-AGTTAAGCTTGCAACTCCCAGACAGCTAGCGAACCTATGCTCCCAACTGATTATTA
1 GTTAG-AAGAGTTAAGCTCGCAACTCCCAGACAGCTAGCGGACCTATGCTCCCAACTGATTATT-
* *
73976948 AAGGTTAGTAGAGTTAAGCTCGCAACCTCCGATCTT
64 AAGGTTAGTAGAGTTAAGCTTGCAACCTCTGATCTT
73976984 ATTTACAAAC
Statistics
Matches: 171, Mismatches: 28, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
102 1 0.01
103 136 0.80
104 33 0.19
105 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (103 bp):
GTTAGAAGAGTTAAGCTCGCAACTCCCAGACAGCTAGCGGACCTATGCTCCCAACTGATTATTAA
GGTTAGTAGAGTTAAGCTTGCAACCTCTGATCTTTTGA
Found at i:73978932 original size:20 final size:20
Alignment explanation
Indices: 73978907--73978957 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 20
73978897 AATTCTTGCC
73978907 AAAATGTATTTTGAAAT-TAA
1 AAAATGTATTTT-AAATGTAA
73978927 AAAATGTA--TTAAATGTAA
1 AAAATGTATTTTAAATGTAA
73978945 AAAATGTGATTTT
1 AAAATGT-ATTTT
73978958 TTTAATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
17 4 0.15
18 12 0.44
19 1 0.04
20 8 0.30
21 2 0.07
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (20 bp):
AAAATGTATTTTAAATGTAA
Found at i:73989907 original size:34 final size:35
Alignment explanation
Indices: 73989859--73989934 Score: 91
Period size: 36 Copynumber: 2.2 Consensus size: 35
73989849 TTTCAAATCT
* *
73989859 GAATATTATATTTTCATAA-ACATATATCAGACCA
1 GAATGTTATATTTTCAGAACACATATATCAGACCA
* * *
73989893 GAATGTTATGTTTTCAGAAGCACATATATCATATCA
1 GAATGTTATATTTTCAGAA-CACATATATCAGACCA
73989929 GAATGT
1 GAATGT
73989935 CACATCAGAC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 16 0.46
36 19 0.54
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (35 bp):
GAATGTTATATTTTCAGAACACATATATCAGACCA
Found at i:73990788 original size:12 final size:12
Alignment explanation
Indices: 73990771--73990795 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73990761 AACTCTGTAA
73990771 CTAGTTTAAATT
1 CTAGTTTAAATT
73990783 CTAGTTTAAATT
1 CTAGTTTAAATT
73990795 C
1 C
73990796 AATTTTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (12 bp):
CTAGTTTAAATT
Found at i:73990836 original size:23 final size:23
Alignment explanation
Indices: 73990805--73990879 Score: 105
Period size: 23 Copynumber: 3.3 Consensus size: 23
73990795 CAATTTTTAA
* *
73990805 ATTTTGAATTATTTAGTAATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
73990828 ATTTAGAATTATTTAGTGATGAT
1 ATTTAGAATTATTTAGTGATAAT
* *
73990851 ATTTAAAATTATTTGGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
73990874 ATTTAG
1 ATTTAG
73990880 GAAAAATCTA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.49
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:73998785 original size:22 final size:21
Alignment explanation
Indices: 73998750--73998808 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 21
73998740 AATTATTTTC
*
73998750 AATAATTTATTAATTTATTAA
1 AATAATTAATTAATTTATTAA
*
73998771 TATAATTAATATAATTTATTAA
1 AATAATTAAT-TAATTTATTAA
*
73998793 AATAATAAATT-ATTTA
1 AATAATTAATTAATTTA
73998809 ATATTAAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 5 0.15
21 9 0.27
22 19 0.58
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
AATAATTAATTAATTTATTAA
Found at i:74005153 original size:32 final size:32
Alignment explanation
Indices: 74005112--74005174 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
74005102 TTAAAAGCTG
74005112 GATCTAGCATTCTTTTGATGTTATTTAACATA
1 GATCTAGCATTCTTTTGATGTTATTTAACATA
74005144 GATCTAGCATTCTTTTGATGTTATTTAACAT
1 GATCTAGCATTCTTTTGATGTTATTTAACAT
74005175 GGATTTTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.48
Consensus pattern (32 bp):
GATCTAGCATTCTTTTGATGTTATTTAACATA
Found at i:74008388 original size:17 final size:18
Alignment explanation
Indices: 74008366--74008399 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
74008356 TTGTTACTAA
74008366 AATTTTATT-TTTAATTG
1 AATTTTATTATTTAATTG
74008383 AATTTTATTATTTAATT
1 AATTTTATTATTTAATT
74008400 TTAATTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (18 bp):
AATTTTATTATTTAATTG
Found at i:74015316 original size:40 final size:40
Alignment explanation
Indices: 74015231--74015381 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
74015221 AATTGAATGA
* * *
74015231 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
74015271 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
74015312 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
74015351 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
74015382 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:74015395 original size:40 final size:40
Alignment explanation
Indices: 74015268--74015397 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
74015258 ATGCTGGAAA
* * * *
74015268 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
74015308 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
74015348 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
74015388 TTATATCCGG
1 TTATATCCGG
74015398 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:74016845 original size:38 final size:40
Alignment explanation
Indices: 74016794--74016874 Score: 148
Period size: 38 Copynumber: 2.1 Consensus size: 40
74016784 AACTAGCATN
74016794 TATCAACTCGCACGAATG-CTTCGGGTCTTAGCCC-GATA
1 TATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATA
74016832 TATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATA
1 TATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATA
74016872 TAT
1 TAT
74016875 TTCCAATGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 18 0.44
39 16 0.39
40 7 0.17
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
TATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATA
Found at i:74024905 original size:40 final size:40
Alignment explanation
Indices: 74024797--74025006 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
74024787 CGGGATTTAA
* * * * *
74024797 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
74024837 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74024877 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74024917 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74024957 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74024997 CCGGATATAT
1 CCGGATATAT
74025007 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:74030690 original size:47 final size:49
Alignment explanation
Indices: 74030568--74030747 Score: 200
Period size: 47 Copynumber: 3.8 Consensus size: 49
74030558 TGTAACCCGC
* * * *
74030568 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
74030614 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
74030664 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
74030708 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
74030748 TCAACCATTC
Statistics
Matches: 114, Mismatches: 7, Indels: 22
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 37 0.32
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:74030736 original size:94 final size:93
Alignment explanation
Indices: 74030576--74030747 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 93
74030566 GCCCATAAGT
* * *
74030576 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
74030641 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
74030669 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATT-CACATCCATAAGTGAACTCGGACTCAACTCA
74030734 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
74030748 TCAACCATTC
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
93 30 0.41
94 44 0.59
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74033406 original size:26 final size:26
Alignment explanation
Indices: 74033377--74033484 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
74033367 TGGTACAAAT
74033377 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
74033403 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74033429 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74033455 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74033481 TGAT
1 TGAT
74033485 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74034115 original size:22 final size:22
Alignment explanation
Indices: 74034087--74034131 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
74034077 ATAAGTTGTG
74034087 AGAGATGAATTAGAAGCTGAAT
1 AGAGATGAATTAGAAGCTGAAT
74034109 AGAGATGAATTAGAAGCTGAAT
1 AGAGATGAATTAGAAGCTGAAT
74034131 A
1 A
74034132 AATTATGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.04, G:0.27, T:0.22
Consensus pattern (22 bp):
AGAGATGAATTAGAAGCTGAAT
Found at i:74040496 original size:26 final size:26
Alignment explanation
Indices: 74040467--74040574 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
74040457 TGGTACAAAT
74040467 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
74040493 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74040519 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74040545 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74040571 TGAT
1 TGAT
74040575 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74046480 original size:79 final size:81
Alignment explanation
Indices: 74046342--74046524 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
74046332 TCGAATGATG
* * * *
74046342 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCTGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATT
74046406 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* **
74046421 TTCCGGGCTAAG-CCCGAAGGCATTGGTG-TGAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCA
74046483 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
74046501 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
74046525 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.67
80 29 0.32
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:74046533 original size:40 final size:39
Alignment explanation
Indices: 74046343--74046526 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
74046333 CGAATGATGT
* * *
74046343 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
74046383 CCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* * *
74046423 CCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTCACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
74046461 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
74046502 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
74046527 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.26
40 79 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:74046548 original size:79 final size:79
Alignment explanation
Indices: 74046397--74046559 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 79
74046387 ACTAAGATCT
* ***
74046397 GAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTCACTAAAT
1 GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAAAT
*
74046462 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* *
74046476 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGT-AGCTA
1 GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTCA-CTA
* *
74046539 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
74046555 GAAGG
1 GAAGG
74046560 TACGTGATTC
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAAAT
CCGGGTTAAATCCC
Found at i:74054383 original size:48 final size:47
Alignment explanation
Indices: 74054288--74054499 Score: 214
Period size: 48 Copynumber: 4.4 Consensus size: 47
74054278 GGGTGTTACA
* * * * **
74054288 ATGGCCCGAAGCCAACTCAA-TAAATCTCGTACCCAAAGAGCTAATATC
1 ATGGCCCGAAGCCAAATCAAGT-AA-CTCGCACCCGAAGTGCCGATATC
* * *
74054336 ATGGCCCGTAGCCAAATC-AGTGAAGCTCGCAGCCGAAGTGTCGATATC
1 ATGGCCCGAAGCCAAATCAAGT-AA-CTCGCACCCGAAGTGCCGATATC
* * *
74054384 ATTGCCCGAAGCAAAATCAAAGTAACTAGCACCCGAAGTGCCGATATC
1 ATGGCCCGAAGCCAAATC-AAGTAACTCGCACCCGAAGTGCCGATATC
*
74054432 -TAGGCCCGAAGCCAAATCAAAGTAACTCGCACCCAAAGTGCCGATATC
1 AT-GGCCCGAAGCCAAATC-AAGTAACTCGCACCCGAAGTGCCGATATC
*
74054480 ATGGCCAGAAGCCAAATCAA
1 ATGGCCCGAAGCCAAATCAA
74054500 TATATCCCCT
Statistics
Matches: 137, Mismatches: 22, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
47 4 0.03
48 127 0.93
49 3 0.02
50 3 0.02
ACGTcount: A:0.35, C:0.28, G:0.20, T:0.17
Consensus pattern (47 bp):
ATGGCCCGAAGCCAAATCAAGTAACTCGCACCCGAAGTGCCGATATC
Found at i:74058953 original size:26 final size:26
Alignment explanation
Indices: 74058924--74059031 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
74058914 TGATACAAAT
74058924 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
74058950 TGATAATAGATTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74058976 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74059002 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74059028 TGAT
1 TGAT
74059032 GGGAATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74067811 original size:25 final size:25
Alignment explanation
Indices: 74067770--74067817 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
74067760 AGGACAAGGT
74067770 TGCTCACACAAGATGTAAAAATAAA
1 TGCTCACACAAGATGTAAAAATAAA
* *
74067795 TGCTCACACGAGCTGTAAAAATA
1 TGCTCACACAAGATGTAAAAATA
74067818 GGCCTACTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.21
Consensus pattern (25 bp):
TGCTCACACAAGATGTAAAAATAAA
Found at i:74067835 original size:27 final size:25
Alignment explanation
Indices: 74067772--74067837 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
74067762 GACAAGGTTG
* *
74067772 CTCACACAAGATGTAAAAATAAATG
1 CTCACACAAGCTGTAAAAATAAATA
* **
74067797 CTCACACGAGCTGTAAAAATAGGCCTA
1 CTCACACAAGCTGTAAAAATA--AATA
74067824 CTCACACAAGCTGT
1 CTCACACAAGCTGT
74067838 GGGCCAGGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
25 19 0.58
27 14 0.42
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (25 bp):
CTCACACAAGCTGTAAAAATAAATA
Done.