Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 244 of 335
Found at i:74068256 original size:45 final size:45
Alignment explanation
Indices: 74068207--74068296 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
74068197 ATTAATAGGT
74068207 ATAAACATACAATTCAAACTTAATAATAGAATATAGAAAGTTCCA
1 ATAAACATACAATTCAAACTTAATAATAGAATATAGAAAGTTCCA
* **
74068252 ATAAACATACAATTCAAACTTAATTATAGAATATAGTTAGTTCCA
1 ATAAACATACAATTCAAACTTAATAATAGAATATAGAAAGTTCCA
74068297 TATGACTTAC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (45 bp):
ATAAACATACAATTCAAACTTAATAATAGAATATAGAAAGTTCCA
Found at i:74070876 original size:51 final size:50
Alignment explanation
Indices: 74070790--74070888 Score: 135
Period size: 51 Copynumber: 2.0 Consensus size: 50
74070780 CTACCTCATA
* * * *
74070790 ACATGTATACATCCATAATGAACTCGGACCTCTCAACGAGCTTGGATGTT
1 ACATGAATACATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGTT
* *
74070840 ACATGAATCACATCCATTATGAATTCAGACCACTCAACGAGCTCGGATG
1 ACATGAAT-ACATCCATAATGAACTCAGACCACTCAACGAGCTCGGATG
74070889 CTCGCATCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
50 7 0.17
51 35 0.83
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (50 bp):
ACATGAATACATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGTT
Found at i:74070919 original size:43 final size:43
Alignment explanation
Indices: 74070847--74071015 Score: 151
Period size: 43 Copynumber: 4.0 Consensus size: 43
74070837 GTTACATGAA
* * * * *
74070847 TCACATCCATTATGAATTCAGACCACTCAACGAGCTCGGATGC
1 TCACATACATCATGAACTCGGACCACTCAACGAGCTCAGATGC
* * * * * *
74070890 TCGCATCCATAATGAACTCGGACCTCTCAATGAGTTCAGATGC
1 TCACATACATCATGAACTCGGACCACTCAACGAGCTCAGATGC
* * * * *
74070933 -CACATAGATCATGAACTTGAACCACTCAACGAGTTCAGATTC
1 TCACATACATCATGAACTCGGACCACTCAACGAGCTCAGATGC
* * * *
74070975 TCACATATATCACGAACTCGGACCGCTCAACGAGCTTAGAT
1 TCACATACATCATGAACTCGGACCACTCAACGAGCTCAGAT
74071016 TTTTAAATTC
Statistics
Matches: 101, Mismatches: 24, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
42 33 0.33
43 68 0.67
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
TCACATACATCATGAACTCGGACCACTCAACGAGCTCAGATGC
Found at i:74072160 original size:16 final size:16
Alignment explanation
Indices: 74072139--74072189 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
74072129 CCTTTTGTTT
74072139 TAATATTTTTAACATA
1 TAATATTTTTAACATA
* * *
74072155 TAATATTATTAATTAAA
1 TAATATTTTTAA-CATA
*
74072172 TAA-AATTTTAACATA
1 TAATATTTTTAACATA
74072187 TAA
1 TAA
74072190 AATCTTTATA
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
15 5 0.19
16 17 0.63
17 5 0.19
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (16 bp):
TAATATTTTTAACATA
Found at i:74075178 original size:18 final size:18
Alignment explanation
Indices: 74075155--74075189 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
74075145 GACTTGGGTT
74075155 TTGCTTGTGGACTTTAAA
1 TTGCTTGTGGACTTTAAA
74075173 TTGCTTGTGGACTTTAA
1 TTGCTTGTGGACTTTAA
74075190 TAGTGAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.20, C:0.11, G:0.23, T:0.46
Consensus pattern (18 bp):
TTGCTTGTGGACTTTAAA
Found at i:74075620 original size:24 final size:26
Alignment explanation
Indices: 74075584--74075637 Score: 67
Period size: 24 Copynumber: 2.1 Consensus size: 26
74075574 CATATTCCCA
74075584 AATTTCACCCAA-TATTAAATT-GAT
1 AATTTCACCCAATTATTAAATTAGAT
**
74075608 AATTTCATTCAATTTATTAAATTAGAT
1 AATTTCACCCAA-TTATTAAATTAGAT
74075635 AAT
1 AAT
74075638 AAAACAATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 10 0.40
26 9 0.36
27 6 0.24
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.43
Consensus pattern (26 bp):
AATTTCACCCAATTATTAAATTAGAT
Found at i:74081033 original size:130 final size:130
Alignment explanation
Indices: 74080798--74081169 Score: 395
Period size: 130 Copynumber: 2.9 Consensus size: 130
74080788 AAAATTCTTC
* * *
74080798 AAAATGAAGACGAAATTTGATGTTTGGCGATTCGCAGAATCGTGCCTTAACGTGTTGGGTTGCAA
1 AAAATGAAGATGAAATTTGATGTTTGGCAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAA
** * * * * *
74080863 TTTCGTATTTGCTCAAAATAATCGAATTTCCCTTCGAAATTTCATTCATATCTTTTAAAATCCCT
66 TTTCACATTTGTTCAAAATAATCGAATATCACTTCAAAATTTCACTCATATCTTTTAAAATCCCT
* * *
74080928 TAAATGAAGATGAGATTTGATGTTTGGCAATTCGCAGAATTGTGCCCTAACGTGTTGGGTTGCAA
1 AAAATGAAGATGAAATTTGATGTTTGGCAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * ** * * *
74080993 TTTCACATTTGTTCAAAATAATCGAATATCATTTTAAAATTTTGCTCGTGTCTTTTAAAATCTCT
66 TTTCACATTTGTTCAAAATAATCGAATATCACTTCAAAATTTCACTCATATCTTTTAAAATCCCT
** * * * * * * * * *
74081058 AAAACAAAGGTGATATGTGATATTTGGCAATTCGCGGGATCGTGCCCTGACGTGTTGGGTAGCGA
1 AAAATGAAGATGAAATTTGATGTTTGGCAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAA
* * ** * *
74081123 TTTCTCGA-TTGTTTAAAATAATTAAATACCCCTTCAAAATTTCACTC
66 TTTCAC-ATTTGTTCAAAATAATCGAATATCACTTCAAAATTTCACTC
74081170 GGCTCTTCTA
Statistics
Matches: 198, Mismatches: 43, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
130 197 0.99
131 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (130 bp):
AAAATGAAGATGAAATTTGATGTTTGGCAATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAA
TTTCACATTTGTTCAAAATAATCGAATATCACTTCAAAATTTCACTCATATCTTTTAAAATCCCT
Found at i:74092976 original size:44 final size:44
Alignment explanation
Indices: 74092927--74093371 Score: 563
Period size: 44 Copynumber: 10.1 Consensus size: 44
74092917 TGAATTCTGT
* * *
74092927 AGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCAAAGACAGC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGC
**
74092971 AGATTTGGTGTCTCTGTATTGGCGGAGAGCAGATCAAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGC
* * *
74093015 AGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAGGATAGC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGC
* * *
74093059 AGATTTGGCGTCTCTGTATTGGCAGAGAGTAGATCAAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGC
* * * *
74093103 AGATCTGGCATCTCTGTATTGACGGAGAGCAGATCGAGGATAGC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGC
* *
74093147 AGATTTGGCGTCTCTGTATTGGCGGAGAACAGATCAAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGC
* * * *
74093191 AGATCTGGCATCTTTATATTGACGGAGAGCAGATCAAAGATAGC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGC
* ** *
74093235 AGATCTGGCATCTCTGTATTGGCGGAGAGCAGATTGAAGA-CGAC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAG-C
* * *
74093279 AGATTTGGCATCTCTGTATTAGCGGAGAGCAGATCGAAGA-CGAC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAG-C
* * *
74093323 AGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAA-ATAAC
1 AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATC-AAAGATAGC
74093367 AGATT
1 AGATT
74093372 GGTGTTCCCG
Statistics
Matches: 352, Mismatches: 46, Indels: 6
0.87 0.11 0.01
Matches are distributed among these distances:
43 1 0.00
44 349 0.99
45 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (44 bp):
AGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATAGC
Found at i:74096210 original size:130 final size:130
Alignment explanation
Indices: 74096023--74096389 Score: 369
Period size: 130 Copynumber: 2.8 Consensus size: 130
74096013 AAAATTCTTC
* * * * *
74096023 AAAACGAAGACGAAATTTGATGTTCGGCGATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAA
1 AAAACGAAGACGATATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACATGTTGGGTTGCAA
* * * * * * *
74096088 TTTCGTATTTGCTCAAAATAATCGAATTTCCCTTCGAAATTTCT-TTCATATCTTTTAAAATCCC
66 TTTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTT-TGCTCATACCTTTTAAAATCCC
74096152 T
130 T
* * * * * *
74096153 TAAATGAAGATGATATTTGATGTTTGGCAATTCGCGGAATTGTGCCTTAACATGTTGGGTTGTAA
1 AAAACGAAGACGATATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACATGTTGGGTTGCAA
* * * * * * *
74096218 TTTTGCATTTGTTCAAAATAATCAAATATCATTTTAAAATTTTGCTCGTGCCTTTTAAAATCTCT
66 TTTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTTGCTCATACCTTTTAAAATCCCT
* * * * * *
74096283 AAAACGAAGGCGATATGTGATATTTGGCAGTTCGCGGGATCGTGCCCTAACATGTTGGGTAGCAA
1 AAAACGAAGACGATATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACATGTTGGGTTGCAA
* * * * * *
74096348 TTTCCCGA-TTGTTTAAAATAATTAAATACCCCTTCAAAATTT
66 TTTCGC-ATTTGCTCAAAATAATCAAATATCACTTCAAAATTT
74096390 CACTCGGCTC
Statistics
Matches: 190, Mismatches: 45, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
129 1 0.01
130 188 0.99
131 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (130 bp):
AAAACGAAGACGATATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACATGTTGGGTTGCAA
TTTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTTGCTCATACCTTTTAAAATCCCT
Found at i:74106036 original size:24 final size:24
Alignment explanation
Indices: 74105999--74106045 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
74105989 TATATATACC
74105999 AATTCAATCAATA-TAAATTCAATA
1 AATTCAATCAATATTAAA-TCAATA
74106023 AATTC-ATCACATATTAAATCAAT
1 AATTCAATCA-ATATTAAATCAAT
74106046 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (24 bp):
AATTCAATCAATATTAAATCAATA
Found at i:74109103 original size:2 final size:2
Alignment explanation
Indices: 74109096--74109130 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
74109086 TCGATCGGAG
*
74109096 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
74109131 GAGTACGCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:74109255 original size:29 final size:29
Alignment explanation
Indices: 74109223--74109295 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
74109213 CTTCGAGCTC
*
74109223 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
74109252 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
74109281 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
74109296 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:74117235 original size:29 final size:29
Alignment explanation
Indices: 74117203--74117275 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
74117193 CTTCGAGCTC
*
74117203 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
74117232 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
74117261 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
74117276 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:74127116 original size:24 final size:24
Alignment explanation
Indices: 74127079--74127125 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
74127069 TATATATACC
74127079 AATTCAATCAATA-TAAATTCAATA
1 AATTCAATCAATATTAAA-TCAATA
74127103 AATTC-ATCACATATTAAATCAAT
1 AATTCAATCA-ATATTAAATCAAT
74127126 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (24 bp):
AATTCAATCAATATTAAATCAATA
Found at i:74130354 original size:130 final size:130
Alignment explanation
Indices: 74130167--74130533 Score: 369
Period size: 130 Copynumber: 2.8 Consensus size: 130
74130157 AAAATTCTTC
* * * * *
74130167 AAAACGAAGACGAAATTTGATGTTCGGCGATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAA
1 AAAACGAAGACGATATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACATGTTGGGTTGCAA
* * * * * * *
74130232 TTTCGTATTTGCTCAAAATAATCGAATTTCCCTTCGAAATTTCT-TTCATATCTTTTAAAATCCC
66 TTTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTT-TGCTCATACCTTTTAAAATCCC
74130296 T
130 T
* * * * * *
74130297 TAAATGAAGATGATATTTGATGTTTGGCAATTCGCGGAATTGTGCCTTAACATGTTGGGTTGTAA
1 AAAACGAAGACGATATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACATGTTGGGTTGCAA
* * * * * * *
74130362 TTTTGCATTTGTTCAAAATAATCAAATATCATTTTAAAATTTTGCTCGTGCCTTTTAAAATCTCT
66 TTTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTTGCTCATACCTTTTAAAATCCCT
* * * * * *
74130427 AAAACGAAGGCGATATGTGATATTTGGCAGTTCGCGGGATCGTGCCCTAACATGTTGGGTAGCAA
1 AAAACGAAGACGATATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACATGTTGGGTTGCAA
* * * * * *
74130492 TTTCCCGA-TTGTTTAAAATAATTAAATACCCCTTCAAAATTT
66 TTTCGC-ATTTGCTCAAAATAATCAAATATCACTTCAAAATTT
74130534 CACTCGGCTC
Statistics
Matches: 190, Mismatches: 45, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
129 1 0.01
130 188 0.99
131 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (130 bp):
AAAACGAAGACGATATTTGATGTTTGGCAATTCGCGGAATCGTGCCCTAACATGTTGGGTTGCAA
TTTCGCATTTGCTCAAAATAATCAAATATCACTTCAAAATTTTGCTCATACCTTTTAAAATCCCT
Found at i:74140180 original size:24 final size:24
Alignment explanation
Indices: 74140143--74140189 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
74140133 TATATATACC
74140143 AATTCAATCAATA-TAAATTCAATA
1 AATTCAATCAATATTAAA-TCAATA
74140167 AATTC-ATCACATATTAAATCAAT
1 AATTCAATCA-ATATTAAATCAAT
74140190 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (24 bp):
AATTCAATCAATATTAAATCAATA
Found at i:74143246 original size:2 final size:2
Alignment explanation
Indices: 74143239--74143269 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
74143229 TCGATCGGAG
*
74143239 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
74143270 GAGTACGCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:74143393 original size:29 final size:29
Alignment explanation
Indices: 74143361--74143433 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
74143351 CTTCGAGCTC
*
74143361 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
74143390 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
74143419 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
74143434 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:74151408 original size:29 final size:29
Alignment explanation
Indices: 74151376--74151448 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
74151366 CTTCGAGCTC
*
74151376 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
74151405 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
74151434 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
74151449 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:74156789 original size:40 final size:38
Alignment explanation
Indices: 74156740--74156879 Score: 122
Period size: 40 Copynumber: 3.6 Consensus size: 38
74156730 AACACACCAG
*
74156740 TTTGGCACCCAGTGCCTCATCGGATAATTCGAAGTACTAA
1 TTTGACACCCAGTGCCTCATCGGATAA-TCGAAGTA-TAA
* * *
74156780 TTTGACACCCAGTGTCTCATCGGCTAAATCAAAGTA-AA
1 TTTGACACCCAGTGCCTCATCGGAT-AATCGAAGTATAA
* * *
74156818 -TTGGCACCTAGTGCCTCATCGAATTAATCTGAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGA-TAATC-GAAGT-ATAA
* * *
74156858 ATTGACACTCAGTGTCTCATCG
1 TTTGACACCCAGTGCCTCATCG
74156880 ACTCAAAGTC
Statistics
Matches: 80, Mismatches: 14, Indels: 11
0.76 0.13 0.10
Matches are distributed among these distances:
37 22 0.28
38 7 0.09
39 1 0.01
40 31 0.39
41 19 0.24
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (38 bp):
TTTGACACCCAGTGCCTCATCGGATAATCGAAGTATAA
Found at i:74156873 original size:78 final size:79
Alignment explanation
Indices: 74156741--74156894 Score: 215
Period size: 78 Copynumber: 2.0 Consensus size: 79
74156731 ACACACCAGT
* * * *
74156741 TTGGCACCCAGTGCCTCATCGGATAATTCGAAGTACTAATTTGACACCCAGTGTCTCATCGGCT-
1 TTGGCACCCAGTGCCTCATCGAATAATTCGAAGTAATAAATTGACACCCAGTGTCTCATCGACTC
74156805 AAA-TCAAAGTAAA
66 AAAGTCAAAGTAAA
* *
74156818 TTGGCACCTAGTGCCTCATCGAATTAA-TCTGAAGTAATAAATTGACACTCAGTGTCTCATCGAC
1 TTGGCACCCAGTGCCTCATCGAA-TAATTC-GAAGTAATAAATTGACACCCAGTGTCTCATCGAC
74156882 TCAAAGTCAAAGT
64 TCAAAGTCAAAGT
74156895 GATCCCTGAG
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
77 23 0.34
78 34 0.51
79 3 0.04
80 7 0.10
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (79 bp):
TTGGCACCCAGTGCCTCATCGAATAATTCGAAGTAATAAATTGACACCCAGTGTCTCATCGACTC
AAAGTCAAAGTAAA
Found at i:74157074 original size:24 final size:24
Alignment explanation
Indices: 74157037--74157083 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
74157027 TATATATACC
74157037 AATTCAATCAATA-TAAATTCAATA
1 AATTCAATCAATATTAAA-TCAATA
74157061 AATTC-ATCACATATTAAATCAAT
1 AATTCAATCA-ATATTAAATCAAT
74157084 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (24 bp):
AATTCAATCAATATTAAATCAATA
Found at i:74157929 original size:19 final size:20
Alignment explanation
Indices: 74157886--74157924 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
74157876 ATTAATAAGC
74157886 AATACATAT-TTTATTATTA
1 AATACATATGTTTATTATTA
74157905 AATACATATGTTTATTATTA
1 AATACATATGTTTATTATTA
74157925 TTACACATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (20 bp):
AATACATATGTTTATTATTA
Found at i:74159258 original size:22 final size:23
Alignment explanation
Indices: 74159198--74159301 Score: 122
Period size: 22 Copynumber: 4.6 Consensus size: 23
74159188 CGATAAGATC
* * *
74159198 TATTCTATAATGACTTTGTGGCA
1 TATTCTGTAATGCCTTCGTGGCA
* *
74159221 TATTCTGTAATACCTTCGTGGAA
1 TATTCTGTAATGCCTTCGTGGCA
74159244 TATT-TGTAATGCCTTCGTGGCA
1 TATTCTGTAATGCCTTCGTGGCA
* * *
74159266 TA-TCTATGATGCCTTTGTGGCA
1 TATTCTGTAATGCCTTCGTGGCA
74159288 TATTCTGTAATGCC
1 TATTCTGTAATGCC
74159302 CTCAAGGAAA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
21 1 0.01
22 35 0.52
23 31 0.46
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.41
Consensus pattern (23 bp):
TATTCTGTAATGCCTTCGTGGCA
Found at i:74159300 original size:45 final size:46
Alignment explanation
Indices: 74159198--74159301 Score: 122
Period size: 45 Copynumber: 2.3 Consensus size: 46
74159188 CGATAAGATC
* * * *
74159198 TATTCTATAATGACTTTGTGGCATATTCTGTAATACCTTCGTGGAA
1 TATTCTGTAATGCCTTCGTGGCATATTCTATAATACCTTCGTGGAA
* * * *
74159244 TATT-TGTAATGCCTTCGTGGCATA-TCTATGATGCCTTTGTGGCA
1 TATTCTGTAATGCCTTCGTGGCATATTCTATAATACCTTCGTGGAA
74159288 TATTCTGTAATGCC
1 TATTCTGTAATGCC
74159302 CTCAAGGAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
44 19 0.39
45 26 0.53
46 4 0.08
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.41
Consensus pattern (46 bp):
TATTCTGTAATGCCTTCGTGGCATATTCTATAATACCTTCGTGGAA
Found at i:74161981 original size:28 final size:29
Alignment explanation
Indices: 74161950--74162006 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
74161940 ATCCGAAATA
74161950 CTGATAT-CATGGCCTGAAGCCAAATCAG
1 CTGATATGCATGGCCTGAAGCCAAATCAG
*
74161978 CTGATATGCATGGCTTGAAGCCAAATCAG
1 CTGATATGCATGGCCTGAAGCCAAATCAG
74162007 TTTATCTCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 7 0.26
29 20 0.74
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (29 bp):
CTGATATGCATGGCCTGAAGCCAAATCAG
Found at i:74164712 original size:209 final size:209
Alignment explanation
Indices: 74164351--74164752 Score: 732
Period size: 209 Copynumber: 1.9 Consensus size: 209
74164341 GTTTACAAGC
74164351 CAATACATTTGGCCAAAGCATAATAACACATGTCATAAAACTAGATCCCTATACATGCCACTCAC
1 CAATACATTTGGCCAAAGCATAATAACACATGTCATAAAACTAGATCCCTATACATGCCACTCAC
*
74164416 TTGAAATTTCTAATATATGCTTCATTATTCCAAAGGTAGTGACTTGATAGTGTGATGATGCCTCC
66 TTGAAATTTCTAATATATGCTTCATTATTCCAAAGGTAGTGACTTGATAGTGTAATGATGCCTCC
* *
74164481 GACGATCTCCAACTCTGAGCTAACCTAACAAGCTAAAAGAAATGGAAATGAGGGAGTAAGCTTAT
131 GACGATCTCCAACTCCGAGCTAACCTAACAAGCTAAAAGAAATGGAAAGGAGGGAGTAAGCTTAT
74164546 AACTCAATATAAGG
196 AACTCAATATAAGG
* * *
74164560 CAATACATTTGGCCAAAGCATAATAACATATGTCATAAAACTAGATCTCTATACATGCTACTCAC
1 CAATACATTTGGCCAAAGCATAATAACACATGTCATAAAACTAGATCCCTATACATGCCACTCAC
74164625 TTGAAATTTCTAATATATGCTTCATTATTCCAAAGGTAGTGACTTGATAGTGTAATGATGCCTCC
66 TTGAAATTTCTAATATATGCTTCATTATTCCAAAGGTAGTGACTTGATAGTGTAATGATGCCTCC
* *
74164690 GATGATCTCCAACTCCGAGCTAACCTGACAAGCTAAAAGAAATGGAAAGGAGGGAGTAAGCTT
131 GACGATCTCCAACTCCGAGCTAACCTAACAAGCTAAAAGAAATGGAAAGGAGGGAGTAAGCTT
74164753 CATGCTTAGT
Statistics
Matches: 185, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
209 185 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (209 bp):
CAATACATTTGGCCAAAGCATAATAACACATGTCATAAAACTAGATCCCTATACATGCCACTCAC
TTGAAATTTCTAATATATGCTTCATTATTCCAAAGGTAGTGACTTGATAGTGTAATGATGCCTCC
GACGATCTCCAACTCCGAGCTAACCTAACAAGCTAAAAGAAATGGAAAGGAGGGAGTAAGCTTAT
AACTCAATATAAGG
Found at i:74169318 original size:20 final size:18
Alignment explanation
Indices: 74169281--74169331 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
74169271 CCATAGCAAC
74169281 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
74169298 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
74169318 TTACAACTTTACAA
1 TCACAA-TTTACAA
74169332 AATTGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:74176189 original size:45 final size:45
Alignment explanation
Indices: 74176129--74176310 Score: 222
Period size: 45 Copynumber: 4.0 Consensus size: 45
74176119 AAATCAAGTA
* * * * * *
74176129 CGATGCCGATGTCCCAGACATGGTCTTAC-ATGTAACCATATATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACTA-GAAAACACATATAT
* *
74176174 CGATGCCAATGTCCCAGACGTGGTCTTACTAAAAAACACATATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACTAGAAAACACATATAT
* *
74176219 CGATGCCAACGTCCCAGACGTGGTCTTACTCGAAAATACATATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACTAGAAAACACATATAT
* * * *
74176264 CGATGCCAACGTCCCAGATGTGGTTTTAATCGAAAACACATATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACTAGAAAACACATATAT
74176309 CG
1 CG
74176311 GAATCCTACT
Statistics
Matches: 122, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 121 0.99
46 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (45 bp):
CGATGCCAACGTCCCAGACGTGGTCTTACTAGAAAACACATATAT
Found at i:74180089 original size:29 final size:29
Alignment explanation
Indices: 74179999--74180158 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
74179989 TACTCATTTC
* * **
74179999 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
74180028 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
74180056 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
74180086 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
74180115 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
74180144 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
74180159 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:74188136 original size:29 final size:29
Alignment explanation
Indices: 74188046--74188205 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
74188036 ACTCGATTTC
* * **
74188046 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
74188075 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
74188103 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
74188133 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
74188162 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
74188191 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
74188206 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:74192165 original size:84 final size:82
Alignment explanation
Indices: 74192051--74192252 Score: 237
Period size: 84 Copynumber: 2.4 Consensus size: 82
74192041 CAAGTTGGAT
* * * * *
74192051 AGCTTTAAGGTTGAATTAAAAATAAGAGAGTCGATTAACTTGAAATTT-TTA-CCTTTAAAGAGG
1 AGCTTTAAGGTTG-ATTGAAACTAAGAGAGTCAATTAAATGGAAATTTATTATCCTTTAAAGAGG
* *
74192114 AACTGAAGTGTTATAATTTAG
65 AACTCAA--GTTACAA-TTAG
* * *
74192135 AGTTTTAAGGTTGCATTGAAACTAAAAGAGTCAATTAAATGGAAATTTAATTATCCTTTAATGAG
1 AGCTTTAAGGTTG-ATTGAAACTAAGAGAGTCAATTAAATGGAAATTT-ATTATCCTTTAAAGAG
74192200 GAACTCAAGTTACAATTAG
64 GAACTCAAGTTACAATTAG
74192219 AGCTTTAAGGTTGATTTGAAACTAAGAGAGTCAA
1 AGCTTTAAGGTTGA-TTGAAACTAAGAGAGTCAA
74192253 ATTGAAAATT
Statistics
Matches: 101, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
83 1 0.01
84 74 0.73
85 6 0.06
86 3 0.03
87 17 0.17
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33
Consensus pattern (82 bp):
AGCTTTAAGGTTGATTGAAACTAAGAGAGTCAATTAAATGGAAATTTATTATCCTTTAAAGAGGA
ACTCAAGTTACAATTAG
Found at i:74192422 original size:82 final size:83
Alignment explanation
Indices: 74192321--74192501 Score: 249
Period size: 82 Copynumber: 2.2 Consensus size: 83
74192311 CTTAAAGAGT
*
74192321 GAAGTTAGAATTTAGAGCTTTCAGGTGGAATTGAAACTAAAAGAGTCAATTA-AGTTGAAAATTT
1 GAAGTTAGAATTTAGAGCTTTAAGGTGGAATTGAAACTAAAAGAGTCAATTACA-TTGAAAATTT
*
74192385 TA-CCTTTAATGAGGAACC
65 TATCCTATAATGAGGAACC
* * * * * *
74192403 GAAGTTAGAATTTAGAGCTTTAAGGTTGAATTGAAACTTAAAGATTGAATTACATTTAAAGTTTT
1 GAAGTTAGAATTTAGAGCTTTAAGGTGGAATTGAAACTAAAAGAGTCAATTACATTGAAAATTTT
*
74192468 ATCCTATAATGAGGAACT
66 ATCCTATAATGAGGAACC
*
74192486 GAAGCTAGAATTTAGA
1 GAAGTTAGAATTTAGA
74192502 AGTTTCAAAA
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
82 57 0.66
83 30 0.34
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (83 bp):
GAAGTTAGAATTTAGAGCTTTAAGGTGGAATTGAAACTAAAAGAGTCAATTACATTGAAAATTTT
ATCCTATAATGAGGAACC
Found at i:74194199 original size:17 final size:17
Alignment explanation
Indices: 74194167--74194214 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
74194157 TGTTAATAAG
*
74194167 ATAATTAAATATAAAATT
1 ATAATAAAATA-AAAATT
*
74194185 TTAATAAAATAAAAATT
1 ATAATAAAATAAAAATT
*
74194202 ATAA-AACATAAAA
1 ATAATAAAATAAAA
74194215 TTAAAAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 8 0.31
17 9 0.35
18 9 0.35
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (17 bp):
ATAATAAAATAAAAATT
Found at i:74194216 original size:15 final size:15
Alignment explanation
Indices: 74194177--74194236 Score: 50
Period size: 17 Copynumber: 3.7 Consensus size: 15
74194167 ATAATTAAAT
*
74194177 ATAAAATTTTAATAAA
1 ATAAAATTATAA-AAA
*
74194193 ATAAAAATTATAAAAC
1 AT-AAAATTATAAAAA
74194209 ATAAAATTA-AAAATA
1 ATAAAATTATAAAA-A
74194224 ATATAAATATATA
1 ATA-AAAT-TATA
74194237 TTTTTAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 4 0.11
15 10 0.28
16 10 0.28
17 11 0.31
18 1 0.03
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (15 bp):
ATAAAATTATAAAAA
Found at i:74199503 original size:26 final size:27
Alignment explanation
Indices: 74199467--74199519 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
74199457 TGTCAGCTAG
* *
74199467 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
74199493 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
74199520 CAGAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:74200865 original size:48 final size:47
Alignment explanation
Indices: 74200786--74200933 Score: 197
Period size: 48 Copynumber: 3.1 Consensus size: 47
74200776 TTGATGTACA
* * *
74200786 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATATATG
1 AGATATATATATGTGGTAAAG-CGAAAGGCTAATGTGAAATATGTATG
74200834 AGATATATATATGTGGTAAAGTCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAG-CGAAAGGCTAATGTGAAATATGTATG
** ** *
74200882 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCGAAA-GGCTAATGTGAAATATGTATG
74200930 AGAT
1 AGAT
74200934 GTGTATATAT
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 4 0.05
48 84 0.95
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (47 bp):
AGATATATATATGTGGTAAAGCGAAAGGCTAATGTGAAATATGTATG
Found at i:74204018 original size:45 final size:45
Alignment explanation
Indices: 74203944--74204042 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
74203934 GATTTCGAAA
* * *
74203944 GCCCGAATAGTATCTCACCGGCATTATAGCATGCTAGGCTCAAAG
1 GCCCGAATAGTATCTCACCAGCATCATAGCATGCTAGGCACAAAG
* *
74203989 GCCCGAATAGTAT-TCCACCAGCATCATAGCCTGCTAGGCACGAAG
1 GCCCGAATAGTATCT-CACCAGCATCATAGCATGCTAGGCACAAAG
*
74204034 GCCTGAATA
1 GCCCGAATA
74204043 CACATCACTG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 1 0.02
45 46 0.98
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.20
Consensus pattern (45 bp):
GCCCGAATAGTATCTCACCAGCATCATAGCATGCTAGGCACAAAG
Found at i:74204076 original size:43 final size:43
Alignment explanation
Indices: 74204016--74204171 Score: 240
Period size: 43 Copynumber: 3.6 Consensus size: 43
74204006 CCAGCATCAT
* * * *
74204016 AGCCTGCTAGGCACGAAGGCCTGAATACACATCACTGACACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAA
*
74204059 AGCCTGCTAGGCGCGAAGGCCCGAATACACATCACCGGCACAA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAA
74204102 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAA
** *
74204145 AGCCTATTAGGCACGAAGGCCCAAATA
1 AGCCTGCTAGGCACGAAGGCCCGAATA
74204172 TAATACCAGC
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 104 1.00
ACGTcount: A:0.33, C:0.32, G:0.24, T:0.12
Consensus pattern (43 bp):
AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAA
Found at i:74209348 original size:50 final size:50
Alignment explanation
Indices: 74209289--74209392 Score: 192
Period size: 50 Copynumber: 2.1 Consensus size: 50
74209279 TTTGACTCAA
74209289 ATATAGGTACTAAAGGTCAATAAGCAAGGTTGGCTTTTTGGCTCTATGTT
1 ATATAGGTACTAAAGGTCAATAAGCAAGGTTGGCTTTTTGGCTCTATGTT
*
74209339 ATATAGGTACTAAAGGTCAATAAGTAAGGTTGGCTTTTTGGCTCTATGTT
1 ATATAGGTACTAAAGGTCAATAAGCAAGGTTGGCTTTTTGGCTCTATGTT
74209389 -TATA
1 ATATA
74209393 CCAGATCACT
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 4 0.08
50 49 0.92
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.38
Consensus pattern (50 bp):
ATATAGGTACTAAAGGTCAATAAGCAAGGTTGGCTTTTTGGCTCTATGTT
Found at i:74213372 original size:34 final size:34
Alignment explanation
Indices: 74213334--74213404 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
74213324 ATCCACAGAG
* * * *
74213334 AAAGTTCGCTGGGACAGTAGACACAAAATAGAAA
1 AAAGTTCACTAGGACAGTAAACAAAAAATAGAAA
* *
74213368 AAAGTTCACTAGGATAGTAAACAAAAAATAGAGA
1 AAAGTTCACTAGGACAGTAAACAAAAAATAGAAA
74213402 AAA
1 AAA
74213405 CACATTGGGA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.54, C:0.11, G:0.20, T:0.15
Consensus pattern (34 bp):
AAAGTTCACTAGGACAGTAAACAAAAAATAGAAA
Found at i:74215918 original size:42 final size:43
Alignment explanation
Indices: 74215856--74215976 Score: 131
Period size: 42 Copynumber: 2.9 Consensus size: 43
74215846 AACTAAGGAG
* * * **
74215856 TCCGAACTCGTTGAGTGGTCCGGGTTCATGA-GATATG-TGGCA
1 TCCGAGCTCGTTGAGAGGTCCGGGTTCATGATG-GATGCAAGCA
* *
74215898 TCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGCAAGCA
1 TCCGAGCTCGTTGAGAGGTCCGGGTTCATGATGGATGCAAGCA
* *
74215941 TACGAGCTCGTTGAGA-GTCCGGGTTCATGGTGGATG
1 TCCGAGCTCGTTGAGAGGTCCGGGTTCATGATGGATG
74215977 TGATTCATGT
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 47 0.71
43 19 0.29
ACGTcount: A:0.20, C:0.19, G:0.34, T:0.27
Consensus pattern (43 bp):
TCCGAGCTCGTTGAGAGGTCCGGGTTCATGATGGATGCAAGCA
Found at i:74217859 original size:31 final size:31
Alignment explanation
Indices: 74217821--74217884 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
74217811 CCTTTTCATA
74217821 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
**
74217852 TTTCATAATTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
74217883 TT
1 TT
74217885 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:74218124 original size:24 final size:24
Alignment explanation
Indices: 74218091--74218242 Score: 245
Period size: 24 Copynumber: 6.4 Consensus size: 24
74218081 CTGGAGGCCT
* *
74218091 AGCCTCTTTTAATAACAGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
74218116 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
74218140 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
74218163 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
74218187 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
74218211 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
74218234 AGCCCTTTT
1 AGCCCTTTT
74218243 GCACTTCCTC
Statistics
Matches: 121, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
23 45 0.37
24 72 0.60
25 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:74218177 original size:71 final size:71
Alignment explanation
Indices: 74218091--74218243 Score: 261
Period size: 71 Copynumber: 2.1 Consensus size: 71
74218081 CTGGAGGCCT
*
74218091 AGCCTCTTTTAATAACAGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCC-CTTTTGATAACAGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
74218156 GGGCATA
65 GGGCATA
* * *
74218163 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTGATAACAGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
74218228 GGCATA
66 GGCATA
74218234 AGCCCTTTTG
1 AGCCCTTTTG
74218244 CACTTCCTCC
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
71 73 0.95
72 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (71 bp):
AGCCCTTTTGATAACAGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGG
GGCATA
Found at i:74218243 original size:47 final size:48
Alignment explanation
Indices: 74218091--74218242 Score: 245
Period size: 47 Copynumber: 3.2 Consensus size: 48
74218081 CTGGAGGCCT
* *
74218091 AGCCTCTTTTAATAACAGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
74218140 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
74218187 AGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
74218234 AGCCCTTTT
1 AGCCCTTTT
74218243 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
47 70 0.72
48 23 0.24
49 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:74218316 original size:20 final size:20
Alignment explanation
Indices: 74218288--74218358 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
74218278 GCATTTATGA
*
74218288 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
74218308 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
74218328 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
74218348 ACATACCATGT
1 ACATATCATGT
74218359 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:74218323 original size:11 final size:11
Alignment explanation
Indices: 74218293--74218347 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
74218283 TATGAACATC
74218293 TCATGTGCATA
1 TCATGTGCATA
*
74218304 TCA--TACATA
1 TCATGTGCATA
74218313 TCATGTGCATA
1 TCATGTGCATA
* *
74218324 TCA--TACATG
1 TCATGTGCATA
74218333 TCATGTGCATA
1 TCATGTGCATA
74218344 TCAT
1 TCAT
74218348 ACATACCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:74220383 original size:28 final size:29
Alignment explanation
Indices: 74220343--74220397 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
74220333 CATGGGCGAT
74220343 GACACGGGCGTGT-CTAGGCCGTGTGAGG
1 GACACGGGCGTGTGCTAGGCCGTGTGAGG
* *
74220371 GACACGGGCGTGTGCTCGGTCGTGTGA
1 GACACGGGCGTGTGCTAGGCCGTGTGA
74220398 AAACCCCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.13, C:0.22, G:0.45, T:0.20
Consensus pattern (29 bp):
GACACGGGCGTGTGCTAGGCCGTGTGAGG
Found at i:74220480 original size:20 final size:20
Alignment explanation
Indices: 74220455--74220500 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
74220445 CGGGTAAGGG
74220455 ACACGGGAATGTCCCAAAGC
1 ACACGGGAATGTCCCAAAGC
**
74220475 ACACGGGCGTGTCCCAAAGC
1 ACACGGGAATGTCCCAAAGC
74220495 ACACGG
1 ACACGG
74220501 CGTGTGCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.33, G:0.28, T:0.09
Consensus pattern (20 bp):
ACACGGGAATGTCCCAAAGC
Found at i:74220504 original size:19 final size:20
Alignment explanation
Indices: 74220464--74220505 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
74220454 GACACGGGAA
74220464 TGTCCCAAAGCACACGGGCG
1 TGTCCCAAAGCACACGGGCG
74220484 TGTCCCAAAGCACAC-GGCG
1 TGTCCCAAAGCACACGGGCG
74220503 TGT
1 TGT
74220506 GCATTGCCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.24, C:0.33, G:0.29, T:0.14
Consensus pattern (20 bp):
TGTCCCAAAGCACACGGGCG
Found at i:74222156 original size:55 final size:57
Alignment explanation
Indices: 74222034--74222161 Score: 154
Period size: 55 Copynumber: 2.3 Consensus size: 57
74222024 AAATAGACAG
* * * * *
74222034 AAATGAAAAATGAAAATGGAGAAATGAAAACATTTGGACATGATTTTTATTTCTTCCA
1 AAAT-AAAAATGAAAATGGAGAAATGAAAACATTTAGAAATGAATGTGATTTCTTCCA
* *
74222092 AAATGAAAATGAAAATGGAG-AATG-GAACATTTAGAAATGAATGTGATTT-TCTCCA
1 AAATAAAAATGAAAATGGAGAAATGAAAACATTTAGAAATGAATGTGATTTCT-TCCA
74222147 AAATAAAAATGAAAA
1 AAATAAAAATGAAAA
74222162 AGACTTGAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
54 1 0.02
55 37 0.61
56 4 0.07
57 15 0.25
58 4 0.07
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.27
Consensus pattern (57 bp):
AAATAAAAATGAAAATGGAGAAATGAAAACATTTAGAAATGAATGTGATTTCTTCCA
Found at i:74226090 original size:40 final size:40
Alignment explanation
Indices: 74226008--74226218 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 40
74225998 TCTTCGAGAT
** * *
74226008 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * * * *
74226046 TTAGCCCGAATATGGTCACTAGCATAAATGCCTTTGGGGC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
74226086 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
74226126 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
74226166 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
74226206 TTAGCCCGGATAT
1 TTAGCCCGGATAT
74226219 CATTCGAATA
Statistics
Matches: 144, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
38 4 0.03
39 15 0.10
40 124 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:74228836 original size:43 final size:43
Alignment explanation
Indices: 74228770--74228959 Score: 292
Period size: 43 Copynumber: 4.4 Consensus size: 43
74228760 ATTTATTTGA
* *
74228770 AAACGCCGCTAAAGGTCAGGACCTTTAGCAGCGCTTTTCGCAC
1 AAACGCCGCTAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCAC
* * *
74228813 AAACGCTGCTAAAGGTCAAGACCTTTAGCGGCGCTTTT-CCATA
1 AAACGCCGCTAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCA-C
* *
74228856 AAACGCCGCTAAAGGTCAGGGCCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCAC
*
74228899 AAACGCCGCTAAAGGTCAGGGCCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCAC
74228942 AAACGCCGCTAAAGGTCA
1 AAACGCCGCTAAAGGTCA
74228960 AAAAATAAAA
Statistics
Matches: 134, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
42 2 0.01
43 129 0.96
44 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCAC
Found at i:74233754 original size:21 final size:21
Alignment explanation
Indices: 74233728--74233806 Score: 76
Period size: 21 Copynumber: 3.8 Consensus size: 21
74233718 CTCCTAAACT
*
74233728 TTAAACCCTAAACCATATATC
1 TTAAACCATAAACCATATATC
*
74233749 TTAAACCATAGTTAA-C-T-CAT-
1 TTAAACCATA---AACCATATATC
*
74233769 TTAAACCCTAAACCATATATC
1 TTAAACCATAAACCATATATC
74233790 TTAAACCATAAACCATA
1 TTAAACCATAAACCATA
74233807 AACTATAATG
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
17 2 0.04
18 1 0.02
19 1 0.02
20 11 0.24
21 27 0.59
22 1 0.02
23 1 0.02
24 2 0.04
ACGTcount: A:0.44, C:0.25, G:0.01, T:0.29
Consensus pattern (21 bp):
TTAAACCATAAACCATATATC
Found at i:74234066 original size:40 final size:40
Alignment explanation
Indices: 74233971--74234138 Score: 185
Period size: 41 Copynumber: 4.1 Consensus size: 40
74233961 GTTATATGAC
*
74233971 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAACGCTCTGGT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCT-GT
*
74234012 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTAT
1 TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGT
* ** * *
74234052 TTTTCGCGGCGTTTTAGTAAAAAACGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTT-GCCAAAAGCGCCGCTAATGCTCTGT
* ** * *
74234093 TTTTAGTGGCGTTTTTGGTAAAA-CGCCGCTATTGCTATGT
1 TTTTAGCGGCG-TTTTGCCAAAAGCGCCGCTAATGCTCTGT
74234133 ATTTTA
1 -TTTTA
74234139 CAATTTTTGC
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
40 31 0.28
41 76 0.68
42 4 0.04
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.36
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGT
Found at i:74234177 original size:12 final size:12
Alignment explanation
Indices: 74234162--74234187 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74234152 GTTTTTTGAT
74234162 AAAACGCCGCTA
1 AAAACGCCGCTA
74234174 AAAACGCCGCTA
1 AAAACGCCGCTA
74234186 AA
1 AA
74234188 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:74239791 original size:40 final size:40
Alignment explanation
Indices: 74239710--74239920 Score: 248
Period size: 40 Copynumber: 5.3 Consensus size: 40
74239700 TCTTCGAGAT
** * *
74239710 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * * * *
74239748 TTAGCCCGGATATGGTCACTAGTATAAATGCCTTTGGGGC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
74239788 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* *
74239828 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
74239868 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
74239908 TTAGCCCGGATAT
1 TTAGCCCGGATAT
74239921 CATTCGAATA
Statistics
Matches: 144, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
38 4 0.03
39 15 0.10
40 124 0.86
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:74243849 original size:46 final size:44
Alignment explanation
Indices: 74243753--74243969 Score: 186
Period size: 46 Copynumber: 4.7 Consensus size: 44
74243743 GCATATCTTT
* * *
74243753 GCCGATGCCATGTTCCAGACATGGTCTTACACTGACACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTCATCTTG-AG
*
74243799 GCCGATGCATGTCCCAGACATGTCTTACACTGACTTACGTCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC-T-CATCTTGAG
* * * * *
74243845 GCCGAGGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-ACTCATCTTGAG
* * * *
74243891 GCCGATGCTGTGTCCTAGACATGGTCTTACACTGGCTC-TCATAATGTG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTGACTCATC-T--TGAG
*
74243939 GCCGATGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
74243970 AGCTCACAAT
Statistics
Matches: 144, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
44 13 0.09
45 16 0.11
46 69 0.48
47 25 0.17
48 21 0.15
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTCATCTTGAG
Found at i:74243918 original size:94 final size:92
Alignment explanation
Indices: 74243799--74243972 Score: 224
Period size: 94 Copynumber: 1.9 Consensus size: 92
74243789 ACATCTCGTA
* **
74243799 GCCGATGCATGTCCCAGACATGTCTTACACTGACT-TACGTCTTGAGGCCGAGGCATGTCCCAAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGACTCT-CATAATGAGGCCGAGGCATGTCCCAAA
74243863 CATGTCTTACACTAGCACTCGTCTTAAT
65 CATGTCTTACACTAGCACTCGTCTTAAT
* * * * * * *
74243891 GCCGATGCTGTGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCTAG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTGACTCTCATAATGAGGCCGAGGCATGTCCCAA
74243956 ACATGTCTTACACTAGC
64 ACATGTCTTACACTAGC
74243973 TCACAATAAC
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
92 8 0.12
93 11 0.16
94 49 0.71
95 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTCTCATAATGAGGCCGAGGCATGTCCCAAAC
ATGTCTTACACTAGCACTCGTCTTAAT
Found at i:74251550 original size:46 final size:44
Alignment explanation
Indices: 74251451--74251565 Score: 160
Period size: 46 Copynumber: 2.5 Consensus size: 44
74251441 GCACCGATGC
* *
74251451 CATGTCCCAGACATGGTCTTACACTGACACATCTTCTAGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTTCGAGCTGAGG
*
74251496 CATGTCCCAGACATGTCTTACACTGACTTACGTC-TCGAGGCTGAGG
1 CATGTCCCAGACATGTCTTACACTGAC--ACATCTTCGA-GCTGAGG
74251542 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
74251566 AGCACTCGTG
Statistics
Matches: 64, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
44 13 0.20
45 17 0.27
46 34 0.53
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTTCGAGCTGAGG
Found at i:74252746 original size:26 final size:26
Alignment explanation
Indices: 74252716--74252800 Score: 75
Period size: 26 Copynumber: 3.3 Consensus size: 26
74252706 AGATAAACTA
74252716 GAATCTAAGTATTGTTAAACAATATT
1 GAATCTAAGTATTGTTAAACAATATT
* ** ** * *
74252742 GAATCCATTTTATCATTGACCAACTA--
1 GAATCTA-AGTATTGTTAAACAA-TATT
74252768 GAATCTAAGTATTGTTAAACAATATT
1 GAATCTAAGTATTGTTAAACAATATT
74252794 GAATCTA
1 GAATCTA
74252801 TTTTATTGAA
Statistics
Matches: 41, Mismatches: 14, Indels: 8
0.65 0.22 0.13
Matches are distributed among these distances:
24 2 0.05
25 9 0.22
26 19 0.46
27 9 0.22
28 2 0.05
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (26 bp):
GAATCTAAGTATTGTTAAACAATATT
Found at i:74252809 original size:14 final size:14
Alignment explanation
Indices: 74252790--74252820 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
74252780 TGTTAAACAA
*
74252790 TATTGAATCTATTT
1 TATTGAATCCATTT
74252804 TATTGAATCCATTT
1 TATTGAATCCATTT
74252818 TAT
1 TAT
74252821 CATTGACCGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.29, C:0.10, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTGAATCCATTT
Found at i:74259949 original size:46 final size:46
Alignment explanation
Indices: 74259888--74260062 Score: 147
Period size: 46 Copynumber: 3.8 Consensus size: 46
74259878 TATTTGGGCA
* *
74259888 TCCGAACT-GTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *** * * ** *
74259933 TCCAAACTCGTTGAGTTGAGTCCGATTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
74259980 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
74260026 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74260063 GCAGGTTACA
Statistics
Matches: 97, Mismatches: 29, Indels: 7
0.73 0.22 0.05
Matches are distributed among these distances:
45 7 0.07
46 58 0.60
47 32 0.33
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:74288293 original size:40 final size:40
Alignment explanation
Indices: 74288248--74288414 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
74288238 CGGAATATAA
74288248 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
74288288 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74288328 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
74288368 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
74288407 CCGGATAT
1 CCGGATAT
74288415 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74288398 original size:80 final size:79
Alignment explanation
Indices: 74288264--74288412 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
74288254 ATAACCACGT
*
74288264 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
74288329 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
74288344 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
74288407 CCGGAT
64 CCGGAT
74288413 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:74296288 original size:40 final size:40
Alignment explanation
Indices: 74296243--74296410 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
74296233 CGGAATATAA
74296243 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
74296283 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74296323 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
74296363 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
74296403 CCGGATAT
1 CCGGATAT
74296411 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74296393 original size:80 final size:80
Alignment explanation
Indices: 74296259--74296408 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
74296249 ATAACCACGT
* *
74296259 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
74296324 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
74296339 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
74296402 CCCGGAT
64 CCCGGAT
74296409 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:74299676 original size:3 final size:3
Alignment explanation
Indices: 74299668--74299693 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
74299658 CCAACTTACA
74299668 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
74299694 CATCATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:74309830 original size:39 final size:39
Alignment explanation
Indices: 74309783--74309965 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
74309773 AATGTTCGAG
74309783 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
74309822 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
74309861 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
74309900 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
74309940 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
74309966 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:74315096 original size:86 final size:86
Alignment explanation
Indices: 74314966--74315250 Score: 324
Period size: 86 Copynumber: 3.3 Consensus size: 86
74314956 ATTTTCAGCT
* * * * * *
74314966 TGTTACCCTACTGCTTATGGGATTAAGGCTT-GTCATCTTTGATCTGTTTCC-CTACTGCTTAGG
1 TGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-CTCCACTACTGCTTAGG
** * * *
74315029 G-TTTTAGATCTGTATACTCATCC
64 GAGATAAGATCTGCA-ACTCAACC
*
74315052 TGTTACCCTACTGCTTGGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
* *
74315117 GATAAGATCTGCAATTTAACC
66 GATAAGATCTGCAACTCAACC
* *
74315138 TGTTACCCTACTGCTTAGAGGTTTAAGGTTCTTCGTCTTCGATCTACTCCACTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
* ****
74315203 GATAAGATCTGCAATTTGGTC
66 GATAAGATCTGCAACTCAACC
*
74315224 TGTTTCCCTACTGCTTAGGGGTTTAAG
1 TGTTACCCTACTGCTTAGGGGTTTAAG
74315251 ACCCTATGAA
Statistics
Matches: 174, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
85 5 0.03
86 160 0.92
87 9 0.05
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (86 bp):
TGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
GATAAGATCTGCAACTCAACC
Found at i:74315458 original size:44 final size:43
Alignment explanation
Indices: 74315399--74315642 Score: 240
Period size: 44 Copynumber: 5.6 Consensus size: 43
74315389 AAATCTAGCT
* * * *
74315399 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATC
1 TGTTTCCCTACTGCTTAGGGGGTT-AAGACCTTCATCTTCGATC
* *
74315443 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTTTATCTTCGATC
1 TGTTTCCCTACTGCTTAGGGGGTTAAGACCTTCATCTTCGATC
* * * * * *
74315486 TGTTTCCCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGGTC
1 TGTTTCCCTACTGCTTAGGGGGTTAAGACCTTCATCTTCGATC
* * * *
74315528 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTCGATC
1 TGTTTCCCTACTGCTTAGGGGGTTAAGA-CCTTCATCTTCGATC
* * * *
74315572 TGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATCTTC-AGCC
1 TGTTTCCCTACTGCTTAGGGGGTTAAGACCT-T-CATCTTCGA-TC
*
74315617 TGTTACCCTACTGCTTAGGGGGTTAA
1 TGTTTCCCTACTGCTTAGGGGGTTAA
74315643 AGCTCGTTGC
Statistics
Matches: 163, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
42 28 0.17
43 50 0.31
44 54 0.33
45 31 0.19
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (43 bp):
TGTTTCCCTACTGCTTAGGGGGTTAAGACCTTCATCTTCGATC
Found at i:74315555 original size:42 final size:42
Alignment explanation
Indices: 74314966--74315603 Score: 185
Period size: 44 Copynumber: 14.7 Consensus size: 42
74314956 ATTTTCAGCT
* * * * *
74314966 TGTTACCCTACTGCTTATGGGATTAAG-GCTTGTCATCTTTGATC
1 TGTTTCCCTACTGCTTA-GGGGTTAAGATC-TG-CATATTCGATC
* * * *
74315010 TGTTTCCCTACTGCTTAGGGTTTTAGATCTGTATACTC-ATCC
1 TGTTTCCCTACTGCTTAGGGGTTAAGATCTGCATATTCGAT-C
* * * * * *
74315052 TGTTACCCTACTGCTTGGGGGTTTAAGGTTCTTCGTCTTCGATC
1 TGTTTCCCTACTGCTTAGGGG-TTAA-GATCTGCATATTCGATC
* * ** *
74315096 TG-CTCCACTACTGCTTAGGGAGATAAGATCTGCA-ATTTAACC
1 TGTTTCC-CTACTGCTTAGGG-GTTAAGATCTGCATATTCGATC
* * * * * *
74315138 TGTTACCCTACTGCTTAGAGGTTTAAGGTTCTTCGTCTTCGATC
1 TGTTTCCCTACTGCTTAG-GGGTTAA-GATCTGCATATTCGATC
** * * *
74315182 T-ACTCCACTACTGCTTAGGGAGATAAGATCTGCA-ATTTGGTC
1 TGTTTCC-CTACTGCTTAGGG-GTTAAGATCTGCATATTCGATC
* * * *
74315224 TGTTTCCCTACTGCTTAGGGGTTTAAGACCCTATGAACA-TC-AGC
1 TGTTTCCCTACTGCTTAGGGG-TTAAGA---TCTGCATATTCGATC
* * * * *
74315268 TTGTTACCCTTCTGCTTAGGGGGTTAA-AGCTTG-ATGGTTTGAATC
1 -TGTTTCCCTACTGCTTA-GGGGTTAAGATC-TGCAT-ATTCG-ATC
* * * * * *
74315313 TGCTT--C-ACTGCATTCGAGGAGG-CAAGATCTGTAATTTTCAACC
1 TGTTTCCCTACTGC-TT--AGG-GGTTAAGATCTG-CATATTCGATC
* * * * * * * * *
74315356 TATTACCCTACTACCTAGGGGGTTAAGGTCTGTA-AATCTAGC
1 TGTTTCCCTACTGCTTA-GGGGTTAAGATCTGCATATTCGATC
* ** * *
74315398 TTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTTGATC
1 -TGTTTCCCTACTGCTTA-GGGGTT-AAGATC-TGCATATTCGATC
** *
74315443 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTTTATCTTCGATC
1 TGTTTCCCTACTGCTTA-GGGGTTAAGATCTGCATATTCGATC
* *
74315486 TGTTTCCCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGGTC
1 TGTTTCCCTACTGCTTAGGG-GTTAAGATCTGCATATTCGATC
* * * * * *
74315528 TGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTCGATC
1 TGTTTCCCTACTGCTTAGGGG-TTAAGA-TCTGCATATTCGATC
*
74315572 TGTTTCCCTACTACTTAGGGGGTTAAGATCTG
1 TGTTTCCCTACTGCTTA-GGGGTTAAGATCTG
74315604 TAAATCTTCA
Statistics
Matches: 423, Mismatches: 123, Indels: 97
0.66 0.19 0.15
Matches are distributed among these distances:
41 9 0.02
42 107 0.25
43 122 0.29
44 135 0.32
45 41 0.10
46 9 0.02
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (42 bp):
TGTTTCCCTACTGCTTAGGGGTTAAGATCTGCATATTCGATC
Found at i:74315564 original size:129 final size:131
Alignment explanation
Indices: 74315399--74315636 Score: 349
Period size: 129 Copynumber: 1.8 Consensus size: 131
74315389 AAATCTAGCT
* * * *
74315399 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTTGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACCGATTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTACTTAGGGG
* * *
74315464 GTTAAGATCT-T-TATCTTC-GATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGG
66 GTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAGGGAGATAAGATCTGCAATTCGG
74315526 TC
130 TC
* *
74315528 TGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTACTTAGGG
1 TGTTACCCTACCGATTAGGGGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTACTTAGGG
74315592 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGG
65 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGG
74315637 GGTTAAAGCT
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
128 9 0.09
129 59 0.61
130 1 0.01
131 26 0.27
132 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (131 bp):
TGTTACCCTACCGATTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTACTTAGGGG
GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGT
C
Found at i:74315589 original size:86 final size:85
Alignment explanation
Indices: 74315441--74315642 Score: 242
Period size: 86 Copynumber: 2.3 Consensus size: 85
74315431 TCATCTTTGA
* * * * * *
74315441 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTTATCTTCGATCTGTTTCCCTACTGCTTAGGG
1 TCTGTTACCCTACCGATTAGGGGGTTAAGACCTTCATCTTCGATCTGTTTCCCTACTACTTAGGG
74315506 AGATAAGATCTGCAATTCGG
66 AGATAAGATCTGCAATTCGG
*
74315526 TCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCATCTTCGATCTGTTTCCCTACTACTTAGG
1 TCTGTTACCCTACCGATTAGGGGGTTAAGA-CCTTCATCTTCGATCTGTTTCCCTACTACTTAGG
* * * *
74315591 GGGTTAAGATCTGTAAATCTTCAG
65 GAGATAAGATCTG-CAA--TTCGG
* * *
74315615 CCTGTTACCCTACTGCTTAGGGGGTTAA
1 TCTGTTACCCTACCGATTAGGGGGTTAA
74315643 AGCTCGTTGC
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
85 26 0.27
86 42 0.43
87 2 0.02
89 28 0.29
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (85 bp):
TCTGTTACCCTACCGATTAGGGGGTTAAGACCTTCATCTTCGATCTGTTTCCCTACTACTTAGGG
AGATAAGATCTGCAATTCGG
Found at i:74315670 original size:89 final size:84
Alignment explanation
Indices: 74315442--74315698 Score: 239
Period size: 89 Copynumber: 3.0 Consensus size: 84
74315432 CATCTTTGAT
* * * *
74315442 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTTATCTTCGATCTGTTTCCCTACTGCTTAGGGA
1 CTGTTACCCTACTGCTTAGGGGGTTAAGCTCCTT-CCTTCGATCTGTTTCCCTACTGCTTAGGG-
* * * *
74315507 GATAAGATCTG-CAATTCGGT
64 GGTAAGATCTGTAAATTCAGC
* * * *
74315527 CTGTTACCCTACCGATTAGGGGTTTAAGAC-CCTTCATCTTCGATCTGTTTCCCTACTACTTAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG-CTCCTTC--CTTCGATCTGTTTCCCTACTGCTTAGG
74315591 GGGTTAAGATCTGTAAATCTTCAGC
63 GGG-TAAGATCTGTAAA--TTCAGC
* * * *
74315616 CTGTTACCCTACTGCTTAGGGGGTTAAAGCTCGTTGCCTTCAATCTATTCCCCTACTGCTTATGG
1 CTGTTACCCTACTGCTTAGGGGGTT-AAGCTCCTT-CCTTCGATCTGTTTCCCTACTGCTTA-GG
* *
74315681 GGGTAAGACCTGTGAATT
63 GGGTAAGATCTGTAAATT
74315699 TACTGATTCT
Statistics
Matches: 139, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
85 28 0.20
86 36 0.26
87 4 0.03
89 59 0.42
90 11 0.08
91 1 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (84 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGCTCCTTCCTTCGATCTGTTTCCCTACTGCTTAGGGGG
TAAGATCTGTAAATTCAGC
Found at i:74320513 original size:49 final size:49
Alignment explanation
Indices: 74320441--74320854 Score: 720
Period size: 49 Copynumber: 8.4 Consensus size: 49
74320431 ACATAATAAT
74320441 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
* *
74320490 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTATATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
74320539 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
74320588 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
* *
74320637 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
74320686 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
* * *
74320735 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
74320784 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAACTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
74320833 ATATGTGATAAGGCCGAATGGC
1 ATATGTGATAAGGCCTAATGGC
74320855 TAATGTGAAT
Statistics
Matches: 347, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 347 1.00
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
Found at i:74320958 original size:37 final size:36
Alignment explanation
Indices: 74320903--74320989 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
74320893 AACTTAAAAA
74320903 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
74320941 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
74320978 TATGTCCGGGTA
1 TATGTCCGGGTA
74320990 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:74335623 original size:10 final size:10
Alignment explanation
Indices: 74335608--74335667 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
74335598 TAATTTTAGG
74335608 ATTTAT-TTT
1 ATTTATCTTT
74335617 CATTTATCTTT
1 -ATTTATCTTT
74335628 ATTTATCTTT
1 ATTTATCTTT
* *
74335638 AATTATATTT
1 ATTTATCTTT
74335648 ATTTAT-TTGT
1 ATTTATCTT-T
74335658 ATTTATCTTT
1 ATTTATCTTT
74335668 TAGAATTTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.05
10 37 0.84
11 5 0.11
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:74335661 original size:30 final size:30
Alignment explanation
Indices: 74335610--74335667 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 30
74335600 ATTTTAGGAT
74335610 TTATTTTCATTTATCTTTATTTATCTTTAA
1 TTATTTTCATTTATCTTTATTTATCTTTAA
74335640 TTATATTT-ATTTAT-TTGTATTTATCTTT
1 TTAT-TTTCATTTATCTT-TATTTATCTTT
74335668 TAGAATTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 2 0.08
30 21 0.81
31 3 0.12
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.69
Consensus pattern (30 bp):
TTATTTTCATTTATCTTTATTTATCTTTAA
Found at i:74336415 original size:17 final size:18
Alignment explanation
Indices: 74336383--74336416 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74336373 TTTTCCTCAT
*
74336383 TTTAATTTCTGCAATTTA
1 TTTAACTTCTGCAATTTA
74336401 TTTAACTTC-GCAATTT
1 TTTAACTTCTGCAATTT
74336417 CAATTCACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.26, C:0.15, G:0.06, T:0.53
Consensus pattern (18 bp):
TTTAACTTCTGCAATTTA
Found at i:74338789 original size:28 final size:29
Alignment explanation
Indices: 74338753--74338814 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
74338743 GTATGTATGA
*
74338753 ATATGAATGTGA-CTAGGCCTAACGGGCC
1 ATATAAATGTGATCTAGGCCTAACGGGCC
* * *
74338781 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATCTAGGCCTAACGGGCC
74338810 ATATA
1 ATATA
74338815 CAGGTAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 11 0.38
29 18 0.62
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (29 bp):
ATATAAATGTGATCTAGGCCTAACGGGCC
Found at i:74338842 original size:32 final size:29
Alignment explanation
Indices: 74338768--74338833 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
74338758 AATGTGACTA
* * * *
74338768 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATACAGGTAATTTG
74338797 GGCCTAATGGGCCATATACAGGTAATTTG
1 GGCCTAATGGGCCATATACAGGTAATTTG
74338826 GGCCTAAT
1 GGCCTAAT
74338834 AATGGGCCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATACAGGTAATTTG
Found at i:74347378 original size:40 final size:40
Alignment explanation
Indices: 74347333--74347420 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 40
74347323 CGGAATTTAG
* *
74347333 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAAC
* *** ** *
74347373 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAAC
74347413 CCGGATAT
1 CCGGATAT
74347421 CTTAGCCCGG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAAC
Found at i:74347425 original size:14 final size:14
Alignment explanation
Indices: 74347406--74347434 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
74347396 TGCCTTCGGG
74347406 TCTTAGCCCGGATA
1 TCTTAGCCCGGATA
74347420 TCTTAGCCCGGATA
1 TCTTAGCCCGGATA
74347434 T
1 T
74347435 AATCACTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.31
Consensus pattern (14 bp):
TCTTAGCCCGGATA
Found at i:74347470 original size:94 final size:93
Alignment explanation
Indices: 74347329--74347508 Score: 225
Period size: 94 Copynumber: 1.9 Consensus size: 93
74347319 TCTTCGGAAT
* * * * *
74347329 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACA
1 TTAGCCGGATATAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACA
* *
74347394 AATGCCTTCGGGTCTTAGCCCGGATATC
66 AATGCCTTCAGGACTTAGCCCGGATATC
* * * * * * *
74347422 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATATTCACTAGCAT
1 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCAC
74347487 AAATGCCTTCAGGACTTAGCCC
65 AAATGCCTTCAGGACTTAGCCC
74347509 AGGTATTATT
Statistics
Matches: 72, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
93 4 0.06
94 68 0.94
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (93 bp):
TTAGCCGGATATAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACA
AATGCCTTCAGGACTTAGCCCGGATATC
Found at i:74347481 original size:40 final size:40
Alignment explanation
Indices: 74347421--74347508 Score: 158
Period size: 40 Copynumber: 2.2 Consensus size: 40
74347411 GCCCGGATAT
*
74347421 CTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGA
1 CTTAGCCCGGATATAATCACTAGCATAAATGCCTTCAGGA
*
74347461 CTTAGCCCGGATATATTCACTAGCATAAATGCCTTCAGGA
1 CTTAGCCCGGATATAATCACTAGCATAAATGCCTTCAGGA
74347501 CTTAGCCC
1 CTTAGCCC
74347509 AGGTATTATT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.26
Consensus pattern (40 bp):
CTTAGCCCGGATATAATCACTAGCATAAATGCCTTCAGGA
Found at i:74355488 original size:40 final size:40
Alignment explanation
Indices: 74355439--74355646 Score: 206
Period size: 40 Copynumber: 5.2 Consensus size: 40
74355429 TCTTCGGAAT
* * *
74355439 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
74355478 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
74355518 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
74355558 TTAGGCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
* * * * *
74355598 TTAGCCCAGATATATTC-ACTAGCATAAATGCCTTCAGGAC
1 TTAGCCCGGATATA-ACAACTAGCACAAATGCCTTCGGGTC
74355638 TTAGCCCGG
1 TTAGCCCGG
74355647 GTATTATTCA
Statistics
Matches: 140, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 3 0.02
40 136 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:74362906 original size:39 final size:39
Alignment explanation
Indices: 74362860--74363121 Score: 445
Period size: 39 Copynumber: 6.7 Consensus size: 39
74362850 TGTATGAGAT
* *
74362860 TTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
74362899 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTACTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
74362938 TTATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
74362977 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
74363016 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
74363055 TTATATCCGGGCTAAGTCCCGAAGGTATTCGTGCT-GTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
74363093 TTATATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
74363122 TGTGTTGGAA
Statistics
Matches: 212, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
38 31 0.15
39 181 0.85
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:74365857 original size:26 final size:26
Alignment explanation
Indices: 74365811--74365914 Score: 154
Period size: 26 Copynumber: 4.0 Consensus size: 26
74365801 ACAAATTGCG
*
74365811 AATGGGTTAGGTAAATGTTCCATGAT
1 AATGGATTAGGTAAATGTTCCATGAT
* *
74365837 AATCGATTAGGTAAATATTCCATGAT
1 AATGGATTAGGTAAATGTTCCATGAT
*
74365863 AATGGGTTAGGTAAATGTTCCATGAT
1 AATGGATTAGGTAAATGTTCCATGAT
* *
74365889 AATGGTTTACGTAAATGTTCCATGAT
1 AATGGATTAGGTAAATGTTCCATGAT
74365915 GGCCATTTCA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.36
Consensus pattern (26 bp):
AATGGATTAGGTAAATGTTCCATGAT
Found at i:74365873 original size:52 final size:52
Alignment explanation
Indices: 74365811--74365914 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
74365801 ACAAATTGCG
*
74365811 AATGGGTTAGGTAAATGTTCCATGATAATCGATTAGGTAAATATTCCATGAT
1 AATGGGTTAGGTAAATGTTCCATGATAATCGATTACGTAAATATTCCATGAT
* * *
74365863 AATGGGTTAGGTAAATGTTCCATGATAATGGTTTACGTAAATGTTCCATGAT
1 AATGGGTTAGGTAAATGTTCCATGATAATCGATTACGTAAATATTCCATGAT
74365915 GGCCATTTCA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.36
Consensus pattern (52 bp):
AATGGGTTAGGTAAATGTTCCATGATAATCGATTACGTAAATATTCCATGAT
Found at i:74370216 original size:28 final size:27
Alignment explanation
Indices: 74370153--74370222 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
74370143 ATAGTGAGTC
74370153 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
74370180 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74370208 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74370223 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74377831 original size:40 final size:40
Alignment explanation
Indices: 74377786--74377952 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
74377776 CGGAATATAA
74377786 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74377826 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74377866 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74377906 CCGGATATAATTC-C-AGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAA-TCACTAGCACAAATGCCTTCGGGTCTTAGC
74377945 CCGGATAT
1 CCGGATAT
74377953 CATTCAATTT
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 30 0.28
40 77 0.71
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74381327 original size:28 final size:27
Alignment explanation
Indices: 74381264--74381333 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
74381254 ATAGTGAGTC
74381264 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
74381291 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74381319 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74381334 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74389224 original size:28 final size:27
Alignment explanation
Indices: 74389161--74389230 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
74389151 ATAGTGAGTC
74389161 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
74389188 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74389216 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74389231 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74393259 original size:40 final size:38
Alignment explanation
Indices: 74393149--74393259 Score: 116
Period size: 39 Copynumber: 2.8 Consensus size: 38
74393139 TTTATGTTTT
* *
74393149 ATATCCGGGTTAAATCCCGCAGGCTTAATGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATG
* * * *
74393187 ATATCTGGACTTATAGT-CCGCAGGCCTAGTGCTGGTAATAG
1 ATATCCGG-GTTA-AATCCCGCAGGCTTAGTGCTGGT-AT-G
*
74393228 ATATCCGGGTTAAATCCCGCAGGCTTTGTGCT
1 ATATCCGGGTTAAATCCCGCAGGCTTAGTGCT
74393260 AGAAATTGGA
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
38 7 0.12
39 22 0.39
40 21 0.37
41 7 0.12
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATG
Found at i:74395443 original size:23 final size:25
Alignment explanation
Indices: 74395398--74395444 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
74395388 CTATACGAAT
* *
74395398 TAAAAAAACTCTTCAATCGAAATCA
1 TAAAAAAAATCTTCAATCCAAATCA
74395423 TAAAAAAAAT-TTCAA-CCAAATC
1 TAAAAAAAATCTTCAATCCAAATC
74395445 GGTATATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 5 0.25
25 9 0.45
ACGTcount: A:0.55, C:0.19, G:0.02, T:0.23
Consensus pattern (25 bp):
TAAAAAAAATCTTCAATCCAAATCA
Found at i:74395896 original size:2 final size:2
Alignment explanation
Indices: 74395889--74395915 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
74395879 TATCCTTATC
74395889 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
74395916 GCCTATAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:74397992 original size:24 final size:24
Alignment explanation
Indices: 74397965--74398019 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
74397955 AAGGTAGAAC
74397965 CCCTTTTAATAACTGGGGCAAAAG
1 CCCTTTTAATAACTGGGGCAAAAG
* *
74397989 CCCTTTTAATAATTGGGGCATAAG
1 CCCTTTTAATAACTGGGGCAAAAG
74398013 CCCTTTT
1 CCCTTTT
74398020 GCACTTCCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (24 bp):
CCCTTTTAATAACTGGGGCAAAAG
Found at i:74398095 original size:20 final size:20
Alignment explanation
Indices: 74398070--74398135 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
74398060 TATGAATACC
74398070 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
74398090 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
*
74398110 TCATGTGCATATCATATATA
1 TCATGTGCATATCATACATA
*
74398130 CCATGT
1 TCATGT
74398136 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:74398100 original size:11 final size:11
Alignment explanation
Indices: 74398070--74398124 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
74398060 TATGAATACC
74398070 TCATGTGCATA
1 TCATGTGCATA
*
74398081 TCA--TACATA
1 TCATGTGCATA
74398090 TCATGTGCATA
1 TCATGTGCATA
* *
74398101 TCA--TACATG
1 TCATGTGCATA
74398110 TCATGTGCATA
1 TCATGTGCATA
74398121 TCAT
1 TCAT
74398125 ATATACCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:74416733 original size:29 final size:29
Alignment explanation
Indices: 74416700--74416831 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
74416690 CCTTCGAGCT
** * *
74416700 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
74416729 TGCACATTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
74416758 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
74416787 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
74416816 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
74416832 ATCTCGTCAC
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 95 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:74416734 original size:58 final size:58
Alignment explanation
Indices: 74416671--74416831 Score: 178
Period size: 58 Copynumber: 2.8 Consensus size: 58
74416661 AATTTAAGCC
* * * * * *
74416671 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * * **
74416729 TGCACATTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * **
74416787 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCA
74416832 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
58 89 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:74416762 original size:87 final size:87
Alignment explanation
Indices: 74416671--74416831 Score: 214
Period size: 87 Copynumber: 1.9 Consensus size: 87
74416661 AATTTAAGCC
* * * * * * *
74416671 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCATGCACAT
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
74416736 TTAGTGCCATATATTTCCAGCA
66 TTAGTGCCATATATTTCCAGCA
* * * **
74416758 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
74416823 TTAGTGCCA
66 TTAGTGCCA
74416832 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
87 62 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (87 bp):
CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
TTAGTGCCATATATTTCCAGCA
Found at i:74424517 original size:29 final size:29
Alignment explanation
Indices: 74424484--74424615 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
74424474 CCTTCGAGCT
** * *
74424484 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
74424513 TGCACATTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
74424542 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
74424571 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
74424600 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
74424616 ATCTCGTCAC
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 95 1.00
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:74424518 original size:58 final size:58
Alignment explanation
Indices: 74424455--74424615 Score: 178
Period size: 58 Copynumber: 2.8 Consensus size: 58
74424445 AATTTAAGCC
* * * * * *
74424455 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * * * **
74424513 TGCACATTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
* * **
74424571 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCA
1 CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCA
74424616 ATCTCGTCAC
Statistics
Matches: 89, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
58 89 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCA
Found at i:74424546 original size:87 final size:87
Alignment explanation
Indices: 74424455--74424615 Score: 214
Period size: 87 Copynumber: 1.9 Consensus size: 87
74424445 AATTTAAGCC
* * * * * * *
74424455 CGCACACATAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCATGCACAT
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
74424520 TTAGTGCCATATATTTCCAGCA
66 TTAGTGCCATATATTTCCAGCA
* * * **
74424542 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCACGCACAC
1 CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
74424607 TTAGTGCCA
66 TTAGTGCCA
74424616 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
87 62 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (87 bp):
CGCACACATAGTGCCATACACTTCCAGCACGCACACCCAGTGCCATATATTTCCAGCACGCACAC
TTAGTGCCATATATTTCCAGCA
Found at i:74426524 original size:27 final size:27
Alignment explanation
Indices: 74426483--74426536 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
74426473 TGTCATGTGA
* *
74426483 AATTGAATGACAAATTATTGTTACATG
1 AATTGAATGACAAATTACTATTACATG
**
74426510 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGACAAATTACTATTACATG
74426537 GGTTGTATCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATTACATG
Found at i:74434242 original size:55 final size:54
Alignment explanation
Indices: 74434155--74434409 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
74434145 ATTAGGGTTT
* *
74434155 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
74434210 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
74434265 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
74434318 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
74434367 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
74434410 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 67 0.39
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:74434361 original size:108 final size:110
Alignment explanation
Indices: 74434165--74434362 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
74434155 AAGGATACCG
*
74434165 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
74434230 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
74434275 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
74434337 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
74434363 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:74434622 original size:16 final size:16
Alignment explanation
Indices: 74434601--74434631 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74434591 ATAAATTTGA
74434601 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
74434617 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
74434632 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:74441788 original size:55 final size:54
Alignment explanation
Indices: 74441702--74441955 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
74441692 ATTAGGGTTT
*
74441702 AAGGATACC-TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
74441756 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
74441811 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
74441864 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
74441913 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
74441956 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 22, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 41 0.24
54 19 0.11
55 60 0.35
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:74441907 original size:108 final size:110
Alignment explanation
Indices: 74441711--74441908 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
74441701 TAAGGATACC
*
74441711 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
74441776 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
74441821 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
74441883 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
74441909 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:74442168 original size:16 final size:16
Alignment explanation
Indices: 74442147--74442177 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74442137 ATAAATTTGA
74442147 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
74442163 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
74442178 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:74448096 original size:27 final size:28
Alignment explanation
Indices: 74448040--74448109 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
74448030 AAATTTGTAC
*
74448040 AGCACTAAGCGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
74448068 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
74448095 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74448110 GACTCACTAC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.60
28 16 0.40
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:74450247 original size:53 final size:54
Alignment explanation
Indices: 74450184--74450343 Score: 189
Period size: 55 Copynumber: 3.0 Consensus size: 54
74450174 TTTTGAACTT
* * *
74450184 ACCATTGCCATGTCTTGACATAGTCTTACGTGGTATCCTTGCCTTAT-GAACCC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACCC
* * * * *
74450237 ACCAATGCCATGCCTTGCCATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACCC
* * *
74450292 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAAC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC
74450344 TTATCAATGC
Statistics
Matches: 88, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
52 2 0.02
53 37 0.42
54 4 0.05
55 43 0.49
56 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (54 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACCC
Found at i:74450411 original size:47 final size:47
Alignment explanation
Indices: 74450353--74450515 Score: 247
Period size: 47 Copynumber: 3.5 Consensus size: 47
74450343 CTTATCAATG
*
74450353 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* *
74450400 CATGGTCTTACATGGTATTCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* * ***
74450447 CATGGTCTTACATGGTATCCTTGTCTTACCATATGCCATG-TCTTGA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
74450493 CATGGTCTTACATGGTATCCTTA
1 CATGGTCTTACATGGTATCCTTA
74450516 ACTGTCAATT
Statistics
Matches: 107, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 25 0.23
47 82 0.77
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:74456887 original size:40 final size:40
Alignment explanation
Indices: 74456836--74456984 Score: 160
Period size: 40 Copynumber: 3.7 Consensus size: 40
74456826 CGGATGATAT
* * *
74456836 CCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGACTAAG-TCCCGAAGGCATTCGTGCTAGTTATTATAA
*
74456876 CCGGACTAAGAT-CTGAAGGCAATT-GTGCTAGTTATTATAA
1 CCGGACTAAG-TCCCGAAGGC-ATTCGTGCTAGTTATTATAA
** **
74456916 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
**
74456956 CCGGGTTAAGTCCCGAAGGCATTCGTGCT
1 CCGGACTAAGTCCCGAAGGCATTCGTGCT
74456985 GGTTGTTACA
Statistics
Matches: 97, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
39 4 0.04
40 90 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
Found at i:74464818 original size:25 final size:25
Alignment explanation
Indices: 74464771--74464818 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
74464761 TTATACCATG
* * * *
74464771 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
74464796 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74464819 GTTTATGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:74464887 original size:20 final size:20
Alignment explanation
Indices: 74464862--74464920 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
74464852 TAAATATGGT
74464862 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
74464882 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
74464902 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
74464921 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Done.