Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 245 of 335
Found at i:74465033 original size:24 final size:24
Alignment explanation
Indices: 74464971--74465042 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 24
74464961 GAGGAAGTGA
*
74464971 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
* *
74464995 GAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
*
74465019 AAAAGAGGC-TAGGCCTCCAATTAT
1 AAAAG-GGCTTAGGCC-CCAGTTAT
74465043 ATGATAAAGC
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
24 30 0.75
25 10 0.25
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTAGGCCCCAGTTATT
Found at i:74465272 original size:31 final size:31
Alignment explanation
Indices: 74465234--74465297 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
74465224 CATTTACAGT
*
74465234 AAAGGCTTCGGCGCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
74465265 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
74465296 AA
1 AA
74465298 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:74466794 original size:26 final size:26
Alignment explanation
Indices: 74466758--74466810 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
74466748 AAGTGTTTCT
74466758 TAAAGTTTCACCTCGGAAAAAAATGC
1 TAAAGTTTCACCTCGGAAAAAAATGC
**
74466784 TAAAGTTTCACCTTTGAAAAAAATGC
1 TAAAGTTTCACCTCGGAAAAAAATGC
74466810 T
1 T
74466811 CAGATTTGGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (26 bp):
TAAAGTTTCACCTCGGAAAAAAATGC
Found at i:74468984 original size:40 final size:40
Alignment explanation
Indices: 74468929--74469040 Score: 163
Period size: 40 Copynumber: 2.8 Consensus size: 40
74468919 TATTTGGATG
74468929 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
* *
74468969 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
* * *
74469009 ATAACCGGGCTAAG-TCCCGAAGGCATTCGTGC
1 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGC
74469041 GGGTTATTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.02
40 64 0.98
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
Found at i:74469047 original size:40 final size:40
Alignment explanation
Indices: 74468945--74469097 Score: 175
Period size: 40 Copynumber: 3.8 Consensus size: 40
74468935 GGACTAAGAT
* * * * *
74468945 CCGAAGGCATTTGTGCTAGTTACTATATCCGGACTAAGAT-
1 CCGAAGGCATTCGTGCGAGTTATTATAACCGGGCTAAG-TC
*
74468985 CCGAAGGCAATT-GTGCTAGTTATTATAACCGGGCTAAGTC
1 CCGAAGGC-ATTCGTGCGAGTTATTATAACCGGGCTAAGTC
* *
74469025 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTATAACCGGGCTAAGTC
* * *
74469065 CCGAAGGTATTCATGCGGGTTATTATAACCGGG
1 CCGAAGGCATTCGTGCGAGTTATTATAACCGGG
74469098 TTGTAACACC
Statistics
Matches: 102, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 4 0.04
40 95 0.93
41 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTATAACCGGGCTAAGTC
Found at i:74470506 original size:40 final size:41
Alignment explanation
Indices: 74470461--74470627 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
74470451 CGGAATATAA
*
74470461 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
74470501 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
74470541 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74470581 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
74470620 CCGGATAT
1 CCGGATAT
74470628 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74471469 original size:17 final size:19
Alignment explanation
Indices: 74471446--74471491 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
74471436 AAGAAGCATG
74471446 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
74471464 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
74471482 AATCATGCTC
1 AATCATGCTC
74471492 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:74476552 original size:40 final size:40
Alignment explanation
Indices: 74476507--74476673 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74476497 CGGAATATAA
74476507 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74476547 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74476587 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74476627 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74476666 CCGGATAT
1 CCGGATAT
74476674 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74477519 original size:17 final size:19
Alignment explanation
Indices: 74477496--74477541 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
74477486 AAGAAGCATG
74477496 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
74477514 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
74477532 AATCATGCTC
1 AATCATGCTC
74477542 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:74481603 original size:55 final size:54
Alignment explanation
Indices: 74481467--74481666 Score: 233
Period size: 55 Copynumber: 3.7 Consensus size: 54
74481457 TTTTCCTGTT
* * * * * **
74481467 GAACTTACCATTGCTATGTCTTCACATGGTCTTACATGGTATTTTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATA
* * *
74481520 GAACTCACCAATGCCATGCCTTGGCATGGTATTACATGGGACCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATA
* * * *
74481574 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCC-TTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTTGCCTTATA
*
74481629 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATG
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATG
74481667 ATATCCTTAT
Statistics
Matches: 124, Mismatches: 20, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
53 43 0.35
54 35 0.28
55 44 0.35
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTTGCCTTATA
Found at i:74481812 original size:46 final size:46
Alignment explanation
Indices: 74481632--74481814 Score: 244
Period size: 47 Copynumber: 4.0 Consensus size: 46
74481622 CCTTATAGAA
* * * *
74481632 CTTACC-AATGCCATGCCTTGACATGGTCTTACATGATATCCTTAT
1 CTTACCAAATGCCATGTCTTAACATGGTCTTACATGGTATCCTTGT
* *
74481677 CTTACCAAATGTCATGT-TTCAAACATTGTCTTACATGGTATCCTTGT
1 CTTACCAAATGCCATGTCTT--AACATGGTCTTACATGGTATCCTTGT
**
74481724 CTTACCAAATGCCATGTTCCAAACATGGTCTTACATGGTATCCTTGT
1 CTTACCAAATGCCATG-TCTTAACATGGTCTTACATGGTATCCTTGT
*
74481771 CTTACCAAATACCATGTCTTAACATGGTCTTACATGGTATCCTT
1 CTTACCAAATGCCATGTCTTAACATGGTCTTACATGGTATCCTT
74481815 AACCGTCAAT
Statistics
Matches: 120, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
45 8 0.07
46 34 0.28
47 77 0.64
48 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.37
Consensus pattern (46 bp):
CTTACCAAATGCCATGTCTTAACATGGTCTTACATGGTATCCTTGT
Found at i:74481899 original size:44 final size:44
Alignment explanation
Indices: 74481819--74481903 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
74481809 ATCCTTAACC
* * *
74481819 GTCAATTCCTCCTTAAATGTCATGTTATGAACATGGACTTTTCT
1 GTCAATTCCTCCTTAAATGCCATGGTATCAACATGGACTTTTCT
* *
74481863 GTCAATTCTTCCTTAATTGCCATGGTA-CAACTATGGACTTT
1 GTCAATTCCTCCTTAAATGCCATGGTATCAAC-ATGGACTTT
74481904 AAGATATCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTATCAACATGGACTTTTCT
Found at i:74484280 original size:56 final size:56
Alignment explanation
Indices: 74484219--74484383 Score: 249
Period size: 56 Copynumber: 2.9 Consensus size: 56
74484209 CATGACATCG
* *
74484219 ATATATGTGTGCGAGTAAGACAACGTTTAATATGTTGGCATCGATATGTGATTCCA
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCA
* * * *
74484275 ATATATGTATGTGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCA
* * *
74484331 ATATATGTGTGCGAGTAAGACCACGTCTAGTACGTTGGCATTGATATGTGATT
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
74484384 ACATGTAAGA
Statistics
Matches: 98, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 98 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCA
Found at i:74489816 original size:47 final size:45
Alignment explanation
Indices: 74489717--74489970 Score: 183
Period size: 47 Copynumber: 5.5 Consensus size: 45
74489707 GTGCTTGTGC
* * *
74489717 ATGTCCTAGACATGTCTTACACTAGCATAACTCT-TA-GCCAATGT
1 ATGTCCCAGACATGTCTTACACTAGC-TATCTCTGTAGGCCGATGT
*
74489761 ATGTCCCAGACACGTCTTACACTAGCTATCTCTGTCGAGGCCGATGT
1 ATGTCCCAGACATGTCTTACACTAGCTATCTCTGT--AGGCCGATGT
* * * * *
74489808 ATGTCCCAGACATGTCTTATACTGGCTAT-TACAGTATGGCTGATGC
1 ATGTCCCAGACATGTCTTACACTAGCTATCT-CTGTA-GGCCGATGT
* ** * * *
74489854 ATGTCCCAGACATGTCATACACTAGCCCTCGTCTGGATGCCGATGCC
1 ATGTCCCAGACATGTCTTACACTAGCTATC-TCTGTAGGCCGATG-T
* * * * * *
74489901 ATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGT-GGCCGAAGC
1 ATGTCCCAGACAT-GTCTTACACTAGCTATC-T-CTGTAGGCCGATGT
* *
74489948 ATATCCTAGACATGTCTTACACT
1 ATGTCCCAGACATGTCTTACACT
74489971 GGCACACAAA
Statistics
Matches: 168, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
43 6 0.04
44 25 0.15
45 1 0.01
46 49 0.29
47 63 0.38
48 22 0.13
49 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (45 bp):
ATGTCCCAGACATGTCTTACACTAGCTATCTCTGTAGGCCGATGT
Found at i:74489963 original size:94 final size:92
Alignment explanation
Indices: 74489764--74489970 Score: 209
Period size: 94 Copynumber: 2.2 Consensus size: 92
74489754 CCAATGTATG
* * ** * * * *
74489764 TCCCAGACACGTCTTACACTAGCTATC-TCTGTCGAGGCCGATGTATGTCCCAGACATGTCTTAT
1 TCCCAGACATGTCATACACTAGCCCTCGTCTG--GATGCCGATGCATGTCCCAAACATGTCTTAC
* * * * *
74489828 ACTGGCTATTACAGTATGGCTGATGCATG
64 ACTGGCTATCACAATATGGCCGAAGCATA
74489857 TCCCAGACATGTCATACACTAGCCCTCGTCTGGATGCCGATGCCATGTCCCAAACATGGTCTTAC
1 TCCCAGACATGTCATACACTAGCCCTCGTCTGGATGCCGATG-CATGTCCCAAACAT-GTCTTAC
* * *
74489922 ACTGGCTCTCATAATGTGGCCGAAGCATA
64 ACTGGCTATCACAATATGGCCGAAGCATA
* *
74489951 TCCTAGACATGTCTTACACT
1 TCCCAGACATGTCATACACT
74489971 GGCACACAAA
Statistics
Matches: 93, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
92 9 0.10
93 35 0.38
94 49 0.53
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
TCCCAGACATGTCATACACTAGCCCTCGTCTGGATGCCGATGCATGTCCCAAACATGTCTTACAC
TGGCTATCACAATATGGCCGAAGCATA
Found at i:74491575 original size:22 final size:21
Alignment explanation
Indices: 74491542--74491583 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
74491532 GAAAATGGTG
74491542 AATTTTAGTTAATTTTGTACTT
1 AATTTTAGTTAATTTT-TACTT
74491564 AATTTT-GATTAATTTTTACT
1 AATTTTAG-TTAATTTTTACT
74491584 ATTCTCGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.60
Consensus pattern (21 bp):
AATTTTAGTTAATTTTTACTT
Found at i:74498339 original size:15 final size:15
Alignment explanation
Indices: 74498319--74498354 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
74498309 ACATACGAGA
*
74498319 CACCTTTAGGGATGT
1 CACCTTTAAGGATGT
74498334 CACCTTTAAGGATGT
1 CACCTTTAAGGATGT
74498349 CACCTT
1 CACCTT
74498355 ACAGGTTGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.33
Consensus pattern (15 bp):
CACCTTTAAGGATGT
Found at i:74499947 original size:17 final size:16
Alignment explanation
Indices: 74499913--74499947 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
74499903 TTTTAATTTT
*
74499913 TTTTTCAATTAGTTAA
1 TTTTTCAATTAATTAA
74499929 TTTTTCAATTAATTGAA
1 TTTTTCAATTAATT-AA
74499946 TT
1 TT
74499948 ATTAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (16 bp):
TTTTTCAATTAATTAA
Found at i:74502833 original size:10 final size:11
Alignment explanation
Indices: 74502808--74502841 Score: 52
Period size: 10 Copynumber: 3.1 Consensus size: 11
74502798 TGAATTTCAG
74502808 TTAATTTTGTAC
1 TTAATTTTG-AC
74502820 TTAATTTTGA-
1 TTAATTTTGAC
74502830 TTAATTTTGAC
1 TTAATTTTGAC
74502841 T
1 T
74502842 ATTTTCGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.48
11 2 0.10
12 9 0.43
ACGTcount: A:0.26, C:0.06, G:0.09, T:0.59
Consensus pattern (11 bp):
TTAATTTTGAC
Found at i:74510999 original size:25 final size:25
Alignment explanation
Indices: 74510970--74511017 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74510960 TTATATAATG
* * *
74510970 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
74510995 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74511018 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:74511086 original size:20 final size:20
Alignment explanation
Indices: 74511061--74511119 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
74511051 TAAATATGGT
74511061 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
74511081 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
74511101 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
74511120 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:74511237 original size:25 final size:24
Alignment explanation
Indices: 74511170--74511241 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
74511160 GAGGAAGTGA
*
74511170 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
* *
74511194 GAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
74511218 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTAGGCC-CCAGTTAT
74511242 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 30 0.73
25 11 0.27
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTAGGCCCCAGTTATT
Found at i:74511484 original size:38 final size:38
Alignment explanation
Indices: 74511433--74511526 Score: 161
Period size: 38 Copynumber: 2.4 Consensus size: 38
74511423 CGTTTACAGT
74511433 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
74511471 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
74511509 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
74511527 GCATGATTGA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
38 40 0.75
39 13 0.25
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:74519265 original size:25 final size:25
Alignment explanation
Indices: 74519236--74519283 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74519226 TTATACCATG
* * *
74519236 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
74519261 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74519284 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:74519352 original size:20 final size:20
Alignment explanation
Indices: 74519327--74519385 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
74519317 TAAATATGGT
74519327 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
74519347 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
74519367 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
74519386 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:74519466 original size:23 final size:24
Alignment explanation
Indices: 74519436--74519530 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
74519426 GAGGAAGTGA
74519436 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
74519459 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
74519483 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
74519507 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
74519531 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:74519504 original size:47 final size:49
Alignment explanation
Indices: 74519437--74519530 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
74519427 AGGAAGTGAA
*
74519437 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
74519484 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
74519531 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:74524264 original size:15 final size:13
Alignment explanation
Indices: 74524242--74524336 Score: 63
Period size: 14 Copynumber: 7.2 Consensus size: 13
74524232 TCAATCTTAT
74524242 TTTAATTAATATAA
1 TTTAATTAAT-TAA
* *
74524256 TTTGGATTAATTTA
1 TTT-AATTAATTAA
74524270 TTTAATT-ATT-A
1 TTTAATTAATTAA
74524281 TTTAATTAATATAA
1 TTTAATTAAT-TAA
* *
74524295 TTTGGATTAATTTA
1 TTT-AATTAATTAA
*
74524309 TTTAAAT-ATT-A
1 TTTAATTAATTAA
*
74524320 TTAAATTAATATAA
1 TTTAATTAAT-TAA
74524334 TTT
1 TTT
74524337 TTATAAATAT
Statistics
Matches: 63, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
11 14 0.22
12 10 0.16
13 7 0.11
14 20 0.32
15 12 0.19
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (13 bp):
TTTAATTAATTAA
Found at i:74524267 original size:19 final size:18
Alignment explanation
Indices: 74524243--74524336 Score: 73
Period size: 19 Copynumber: 4.9 Consensus size: 18
74524233 CAATCTTATT
74524243 TTAATTAATATAATTTGGA
1 TTAATTAATATAATTT-GA
* * *
74524262 TTAATTTATTTAATTATTA
1 TTAATTAATATAATT-TGA
74524281 TTTAATTAATATAATTTGGA
1 -TTAATTAATATAATTT-GA
* *
74524301 TTAATTTATTTAAATATT-A
1 TTAATTAATAT-AAT-TTGA
74524320 TTAAATTAATATAATTT
1 TT-AATTAATATAATTT
74524337 TTATAAATAT
Statistics
Matches: 59, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
18 2 0.03
19 30 0.51
20 25 0.42
21 2 0.03
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.54
Consensus pattern (18 bp):
TTAATTAATATAATTTGA
Found at i:74524286 original size:39 final size:39
Alignment explanation
Indices: 74524242--74524356 Score: 176
Period size: 39 Copynumber: 2.9 Consensus size: 39
74524232 TCAATCTTAT
74524242 TTTAATTAATATAATTTGGATTAATTTATTTAATTATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAATTATTA
*
74524281 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAATTATTA
* ** *
74524320 TTAAATTAATATAATTTTTATAAATATTATTTAATTA
1 TTTAATTAATATAATTTGGATTAAT-TTATTTAATTA
74524357 AAATAAAATT
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 59 0.86
40 10 0.14
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (39 bp):
TTTAATTAATATAATTTGGATTAATTTATTTAATTATTA
Found at i:74524287 original size:20 final size:19
Alignment explanation
Indices: 74524261--74524356 Score: 77
Period size: 20 Copynumber: 4.9 Consensus size: 19
74524251 TATAATTTGG
74524261 ATTAATTTATTTAATTATT
1 ATTAATTTATTTAATTATT
* * *
74524280 ATTTAATTAATATAATT-TGG
1 A-TTAATTTATTTAATTAT-T
*
74524300 ATTAATTTATTTAAATATT
1 ATTAATTTATTTAATTATT
* * *
74524319 ATTAAATTAATATAATTTTT
1 ATT-AATTTATTTAATTATT
*
74524339 ATAAATATTATTTAATTA
1 ATTAAT-TTATTTAATTA
74524357 AAATAAAATT
Statistics
Matches: 57, Mismatches: 15, Indels: 9
0.70 0.19 0.11
Matches are distributed among these distances:
19 20 0.35
20 37 0.65
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
ATTAATTTATTTAATTATT
Found at i:74524344 original size:29 final size:29
Alignment explanation
Indices: 74524302--74524362 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
74524292 TAATTTGGAT
*
74524302 TAATTTATTTAAATATTATTAAATTAATA
1 TAATTTATTTAAATATTATTAAATTAAAA
*
74524331 TAATTT-TTATAAATATTATTTAATTAAAA
1 TAATTTATT-TAAATATTATTAAATTAAAA
74524360 TAA
1 TAA
74524363 AATTTTTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (29 bp):
TAATTTATTTAAATATTATTAAATTAAAA
Found at i:74524578 original size:9 final size:9
Alignment explanation
Indices: 74524561--74524750 Score: 212
Period size: 9 Copynumber: 21.7 Consensus size: 9
74524551 TATATACTTG
74524561 AACTTACAT
1 AACTTACAT
*
74524570 AACTCACAT
1 AACTTACAT
74524579 AACTTACAT
1 AACTTACAT
74524588 AACTTACAT
1 AACTTACAT
*
74524597 AACTTATAT
1 AACTTACAT
74524606 AACTTACAT
1 AACTTACAT
74524615 AACTTACAT
1 AACTTACAT
*
74524624 AACTCACAT
1 AACTTACAT
74524633 AACTTACAT
1 AACTTACAT
74524642 AACTT--AT
1 AACTTACAT
* *
74524649 -ATTTAGAT
1 AACTTACAT
*
74524657 AACTCACAT
1 AACTTACAT
*
74524666 AACTCACAT
1 AACTTACAT
*
74524675 AACTTACAA
1 AACTTACAT
74524684 AACTTACAT
1 AACTTACAT
*
74524693 AATTTACAT
1 AACTTACAT
74524702 AACTTACAT
1 AACTTACAT
74524711 AA--TACAT
1 AACTTACAT
* *
74524718 AA-ATATAT
1 AACTTACAT
* *
74524726 ATCATATCAT
1 AACTTA-CAT
74524736 AACTTACAT
1 AACTTACAT
74524745 AACTTA
1 AACTTA
74524751 ATTAGAGTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
6 3 0.02
7 9 0.06
8 7 0.05
9 130 0.84
10 6 0.04
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.33
Consensus pattern (9 bp):
AACTTACAT
Found at i:74527246 original size:32 final size:32
Alignment explanation
Indices: 74527210--74527274 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
74527200 TGTATGCATT
74527210 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74527242 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74527274 T
1 T
74527275 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:74528776 original size:26 final size:26
Alignment explanation
Indices: 74528742--74528794 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
74528732 TTTATAGTTT
74528742 TACCACTAGGAGATAAATT-ACCGAAA
1 TACCACTAGG-GATAAATTGACCGAAA
* * *
74528768 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCACTAGGGATAAATTGACCGAAA
74528794 T
1 T
74528795 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCACTAGGGATAAATTGACCGAAA
Found at i:74530384 original size:12 final size:12
Alignment explanation
Indices: 74530367--74530397 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
74530357 ACTCGGGGAA
74530367 GAGGCCGTGGTC
1 GAGGCCGTGGTC
74530379 GAGGCCGTGGTC
1 GAGGCCGTGGTC
74530391 GAGGCCG
1 GAGGCCG
74530398 AGGTAGTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:74535265 original size:32 final size:32
Alignment explanation
Indices: 74535229--74535293 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
74535219 TGTATGCATT
74535229 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74535261 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
74535293 T
1 T
74535294 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:74536791 original size:26 final size:26
Alignment explanation
Indices: 74536762--74536814 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
74536752 TTTACAGTTT
74536762 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
74536788 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
74536814 T
1 T
74536815 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:74541900 original size:43 final size:42
Alignment explanation
Indices: 74541853--74542008 Score: 197
Period size: 43 Copynumber: 3.6 Consensus size: 42
74541843 AAAAAAGCAC
* * *
74541853 CGCTAAAAGTCAT-AGCTTTTAGCGGTGCTTCCCCAACAAACG
1 CGCTAAAAGCCATGA-CTTTTAGCGGCGCTTCCCCTACAAACG
* *
74541895 TCGCTAAAAGCCATGACTTTTAGTGGCACTTCCCCTACAAACG
1 -CGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCTACAAACG
*
74541938 CTGCTAAAAGCCATGACTTTTAGCGACGCTTCCCCTACAAACG
1 C-GCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCTACAAACG
* *
74541981 CCACTAAAACCCATGACTTTTAGCGGCG
1 -CGCTAAAAGCCATGACTTTTAGCGGCG
74542009 TTTTTCTCAC
Statistics
Matches: 99, Mismatches: 11, Indels: 6
0.85 0.09 0.05
Matches are distributed among these distances:
42 1 0.01
43 96 0.97
44 2 0.02
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (42 bp):
CGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCTACAAACG
Found at i:74542021 original size:43 final size:43
Alignment explanation
Indices: 74541868--74542032 Score: 179
Period size: 43 Copynumber: 3.8 Consensus size: 43
74541858 AAAGTCATAG
** * * *
74541868 CTTTTAGCGGTGCTTCCCCAACAAACGTCGCTAAAAGCCATGA
1 CTTTTAGCGACGCTTCCCCTACAAACGCCGCTAAAACCCATGA
* * * * *
74541911 CTTTTAGTGGCACTTCCCCTACAAACGCTGCTAAAAGCCATGA
1 CTTTTAGCGACGCTTCCCCTACAAACGCCGCTAAAACCCATGA
*
74541954 CTTTTAGCGACGCTTCCCCTACAAACGCCACTAAAACCCATGA
1 CTTTTAGCGACGCTTCCCCTACAAACGCCGCTAAAACCCATGA
* ***
74541997 CTTTTAGCGGCG-TTTTTCTCACAAACGCCGCTAAAA
1 CTTTTAGCGACGCTTCCCCT-ACAAACGCCGCTAAAA
74542033 GTCTTGATCT
Statistics
Matches: 104, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
42 4 0.04
43 100 0.96
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.25
Consensus pattern (43 bp):
CTTTTAGCGACGCTTCCCCTACAAACGCCGCTAAAACCCATGA
Found at i:74542021 original size:86 final size:86
Alignment explanation
Indices: 74541852--74542033 Score: 215
Period size: 86 Copynumber: 2.1 Consensus size: 86
74541842 GAAAAAAGCA
* ** * * *
74541852 CCGCTAAAAGTCATAGCTTTTAGCGGTGCTTCCCCAACAAACGTCGCTAAAAGCCATGACTTTTA
1 CCGCTAAAAGCCATAGCTTTTAGCGACGCTTCCCCAACAAACGCCACTAAAACCCATGACTTTTA
*
74541917 GTGGCACTTCCCCTACAAACG
66 GCGGCACTTCCCCTACAAACG
* *
74541938 CTGCTAAAAGCCAT-GACTTTTAGCGACGCTTCCCCTACAAACGCCACTAAAACCCATGACTTTT
1 CCGCTAAAAGCCATAG-CTTTTAGCGACGCTTCCCCAACAAACGCCACTAAAACCCATGACTTTT
* ***
74542002 AGCGGC-GTTTTTCTCACAAACG
65 AGCGGCACTTCCCCT-ACAAACG
74542024 CCGCTAAAAG
1 CCGCTAAAAG
74542034 TCTTGATCTT
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
85 5 0.06
86 75 0.94
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (86 bp):
CCGCTAAAAGCCATAGCTTTTAGCGACGCTTCCCCAACAAACGCCACTAAAACCCATGACTTTTA
GCGGCACTTCCCCTACAAACG
Found at i:74549472 original size:26 final size:28
Alignment explanation
Indices: 74549440--74549508 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
74549430 ATATAGTGAG
74549440 TCGCACACTTAGTGC-ATATAATC-AAC
1 TCGCACACTTAGTGCTATATAATCAAAC
*
74549466 TCGCACACTTAGTGCTATATGATCAAAC
1 TCGCACACTTAGTGCTATATAATCAAAC
74549494 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
74549509 CATTCTCATG
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 15 0.38
27 7 0.17
28 18 0.45
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATATAATCAAAC
Found at i:74558029 original size:39 final size:40
Alignment explanation
Indices: 74557970--74558079 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
74557960 CTGGAAATTA
* * *
74557970 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCG-TAC
*
74558011 -ATCC-GGCTAAGACCCGAAGGC-ATTCGTGCGAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCGTAC
*
74558049 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
74558080 ACGTGGTTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
38 5 0.08
39 28 0.47
40 25 0.42
41 2 0.03
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCGTAC
Found at i:74559667 original size:28 final size:27
Alignment explanation
Indices: 74559605--74559671 Score: 95
Period size: 28 Copynumber: 2.6 Consensus size: 27
74559595 ATAGTGAGTC
74559605 CGCACACTTAGTGC-ATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
74559631 --CACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
74559657 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74559672 GTACAAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
24 12 0.33
25 7 0.19
26 4 0.11
28 13 0.36
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:74561353 original size:48 final size:48
Alignment explanation
Indices: 74561281--74561457 Score: 185
Period size: 48 Copynumber: 3.9 Consensus size: 48
74561271 GTACTAAGAA
* *
74561281 GCCAATGCCATATCCC-GTATATGGTCTTACATGGGATCACATATCGAT
1 GCCAATGCCATGTCCCAG-ACATGGTCTTACATGGGATCACATATCGAT
*
74561329 GCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT---ATGTCGAT
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGAT
**** *
74561374 GCCAAT---A-G-CCCAG-CTATGGTCTTACACAAAATTACATATCGAT
1 GCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATCGAT
*
74561417 GCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 GCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
74561458 CATAACCCTA
Statistics
Matches: 104, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
39 1 0.01
40 18 0.17
41 1 0.01
42 1 0.01
43 12 0.12
45 13 0.12
46 1 0.01
47 1 0.01
48 54 0.52
49 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (48 bp):
GCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGAT
Found at i:74569761 original size:22 final size:22
Alignment explanation
Indices: 74569719--74569762 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
74569709 AATTATTTAC
* *
74569719 GACTAAAGTATAGTGTTCATAT
1 GACTAAAGAATAGTGTGCATAT
74569741 GACTAAATGAATAGT-TGCATAT
1 GACTAAA-GAATAGTGTGCATAT
74569763 ACGATATTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (22 bp):
GACTAAAGAATAGTGTGCATAT
Found at i:74570060 original size:40 final size:40
Alignment explanation
Indices: 74569986--74570204 Score: 297
Period size: 40 Copynumber: 5.6 Consensus size: 40
74569976 AACCCAAGTA
* *
74569986 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
74570025 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
74570065 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
74570105 CCTTCGGGACTTAGCCCGG-TATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
74570144 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
74570183 CCTTCGGG-CTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
74570205 CATCCGAATA
Statistics
Matches: 161, Mismatches: 14, Indels: 11
0.87 0.08 0.06
Matches are distributed among these distances:
38 14 0.09
39 56 0.35
40 90 0.56
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:74570137 original size:79 final size:79
Alignment explanation
Indices: 74569986--74570204 Score: 320
Period size: 79 Copynumber: 2.8 Consensus size: 79
74569976 AACCCAAGTA
*
74569986 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATATAG
*
74570050 TCACTAGCACAAAAG
65 TCAATAGCACAAAAG
*
74570065 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGG-TATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATATAG
**
74570129 TCAATAGCACAACTG
65 TCAATAGCACAAAAG
* *
74570144 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCAC-CATGCCTTCGGGCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATAT
74570205 CATCCGAATA
Statistics
Matches: 128, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
77 10 0.08
78 13 0.10
79 62 0.48
80 43 0.34
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATATAGT
CAATAGCACAAAAG
Found at i:74578471 original size:40 final size:40
Alignment explanation
Indices: 74578397--74578617 Score: 270
Period size: 40 Copynumber: 5.6 Consensus size: 40
74578387 AACCCAAGTA
* * *
74578397 CCTTCGAGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
** * *
74578436 CCTTTAGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
74578476 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
74578516 CCTTCGGGACTTAGCCCGGGTATAGTCAATAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
74578556 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
74578595 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
74578618 CATCCGAATA
Statistics
Matches: 155, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.77
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:74592251 original size:44 final size:43
Alignment explanation
Indices: 74592200--74592346 Score: 156
Period size: 43 Copynumber: 3.4 Consensus size: 43
74592190 ATATGTGTTA
*
74592200 TCATGTAAGACCACGTCTGGGACATTGACATCGACT-TATGATT
1 TCATGTAAGACCACGTCTGGGACATTGGCATCGA-TATATGATT
* * *
74592243 TACATGTAAGACCATGTCTGGGACGTTGGCATC-ATATTTGATT
1 T-CATGTAAGACCACGTCTGGGACATTGGCATCGATATATGATT
* * * *
74592286 TCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGAGT
1 TCATGTAAGACCAC-GTCTGGGACATTGGCATCGATATATGATT
* *
74592329 GCATGTAAGAACACGTCT
1 TCATGTAAGACCACGTCT
74592347 AGGATGTTGG
Statistics
Matches: 87, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
42 27 0.31
43 31 0.36
44 29 0.33
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
TCATGTAAGACCACGTCTGGGACATTGGCATCGATATATGATT
Found at i:74592303 original size:42 final size:44
Alignment explanation
Indices: 74592201--74592326 Score: 145
Period size: 42 Copynumber: 2.9 Consensus size: 44
74592191 TATGTGTTAT
* * *
74592201 CATGTAAGACCAC-GTCTGGGACATTGACATCGACT-TATGATTTA
1 CATGTAAGACC-CTGTCTGGGACGTTGGCATCGA-TATTTGATTTA
*
74592245 CATGTAAGACCATGTCTGGGACGTTGGCATC-ATATTTGATTT-
1 CATGTAAGACCCTGTCTGGGACGTTGGCATCGATATTTGATTTA
*
74592287 CGTGTAAGACCCTGTCTGGGACAG-TGGCATCGATATTTGA
1 CATGTAAGACCCTGTCTGGGAC-GTTGGCATCGATATTTGA
74592327 GTGCATGTAA
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
42 28 0.39
43 17 0.24
44 27 0.38
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (44 bp):
CATGTAAGACCCTGTCTGGGACGTTGGCATCGATATTTGATTTA
Found at i:74592358 original size:43 final size:42
Alignment explanation
Indices: 74592245--74592359 Score: 108
Period size: 43 Copynumber: 2.7 Consensus size: 42
74592235 TTATGATTTA
* * * * *
74592245 CATGTAAGACCATGTCTGGGACGTTGGCATCATATTTGATTT
1 CATGTAAGAACACGTCTGGGAAGTTGGCATCATATTTGAGTG
* *
74592287 CGTGTAAG-ACCCTGTCTGGGACAG-TGGCATCGATATTTGAGTG
1 CATGTAAGAACAC-GTCTGGGA-AGTTGGCATC-ATATTTGAGTG
* *
74592330 CATGTAAGAACACGTCTAGGATGTTGGCAT
1 CATGTAAGAACACGTCTGGGAAGTTGGCAT
74592360 TGTACCAGCT
Statistics
Matches: 57, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
41 1 0.02
42 23 0.40
43 30 0.53
44 3 0.05
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (42 bp):
CATGTAAGAACACGTCTGGGAAGTTGGCATCATATTTGAGTG
Found at i:74594104 original size:40 final size:41
Alignment explanation
Indices: 74594060--74594285 Score: 243
Period size: 40 Copynumber: 5.7 Consensus size: 41
74594050 GCTACTCGTT
* * *
74594060 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATT-TAGTAACTCGCA
* ** *
74594100 CAAATGCCTTC-GGAACTTAATCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* *
74594140 CAAATGCCTTC-AGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
*
74594180 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * *
74594220 CAAATGCCTTC-GGATGTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAAC-TCGCA
74594261 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGGATCTTAGCCCGGA
74594286 CATCATTCGA
Statistics
Matches: 165, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 149 0.90
41 13 0.08
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (41 bp):
CAAATGCCTTCGGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:74594178 original size:80 final size:80
Alignment explanation
Indices: 74594081--74594278 Score: 281
Period size: 80 Copynumber: 2.5 Consensus size: 80
74594071 GGGACATAGC
* *
74594081 CCGGTTATAGTAGCTCGCACAAATGCCTTCGGAACTTAATCCAGATTTAGTAACTCGCACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGAACTTAATCCAGATTTAGTAACTCGCACAAATG
74594146 CCTTCAGATCTTAGT
66 CCTTCAGATCTTAGT
* * * *
74594161 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGAACTTAATCCAGATTTAGTAACTCGCACAAATG
* *
74594226 CCTTCGGATGTTAGT
66 CCTTCAGATCTTAGT
* * *
74594241 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGAACTTA
74594279 GCCCGGACAT
Statistics
Matches: 104, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 96 0.92
81 8 0.08
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (80 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGAACTTAATCCAGATTTAGTAACTCGCACAAATG
CCTTCAGATCTTAGT
Found at i:74600675 original size:24 final size:24
Alignment explanation
Indices: 74600624--74600766 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
74600614 GTTTTATCAT
*
74600624 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
74600649 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
74600673 ATAACTGGGGCATAAGCCTTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
74600697 ATAACTGGGGCA-AAACCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
74600720 GTAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
74600744 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
74600767 GCACTTCCTC
Statistics
Matches: 106, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
23 20 0.19
24 74 0.70
25 12 0.11
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:74600841 original size:20 final size:20
Alignment explanation
Indices: 74600816--74600882 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
74600806 TTATGAATAC
*
74600816 ATCATGTGCATATCACACAT
1 ATCATGTGCATATCATACAT
74600836 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
74600856 GTCATGTGCATACCATACAT
1 ATCATGTGCATATCATACAT
*
74600876 ACCATGT
1 ATCATGT
74600883 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74604793 original size:27 final size:26
Alignment explanation
Indices: 74604749--74604800 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
74604739 CTCACTGCAA
*
74604749 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
74604776 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
74604801 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:74611898 original size:68 final size:67
Alignment explanation
Indices: 74611826--74611975 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
74611816 CATCATGTGT
* * * *
74611826 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
74611888 ATGTAG
62 ATGTAG
** * *
74611894 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
74611959 AG
66 AG
74611961 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
74611976 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:74611931 original size:64 final size:64
Alignment explanation
Indices: 74611850--74612033 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
74611840 AGACATTATG
* *
74611850 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
74611914 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
74611979 AA
63 AA
* * * *
74611981 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
74612034 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:74613123 original size:2 final size:2
Alignment explanation
Indices: 74613116--74613144 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
74613106 TCATGACATG
74613116 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
74613145 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:74616354 original size:68 final size:67
Alignment explanation
Indices: 74616282--74616431 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
74616272 CATCATGTGT
* * * *
74616282 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
74616344 ATGTAG
62 ATGTAG
** * *
74616350 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
74616415 AG
66 AG
74616417 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
74616432 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:74616387 original size:64 final size:64
Alignment explanation
Indices: 74616306--74616489 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
74616296 AGACATTATG
* *
74616306 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
74616370 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
74616435 AA
63 AA
* * * *
74616437 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
74616490 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:74619558 original size:27 final size:27
Alignment explanation
Indices: 74619519--74619583 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
74619509 TGGATAAGTT
*
74619519 GTAGAATTGCCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
74619546 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
74619573 GTAAAATTACC
1 GTAGAATTACC
74619584 ATTTTGCCTC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:74624372 original size:40 final size:40
Alignment explanation
Indices: 74624328--74624403 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
74624318 AACAACCAGC
* *
74624328 ACGAATGCTTTCGGGACTTAGCCCGGTTATAATAACCCGT
1 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGT
74624368 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAAC
1 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAAC
74624404 TAGCACAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (40 bp):
ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCGT
Found at i:74624417 original size:40 final size:39
Alignment explanation
Indices: 74624325--74624461 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 39
74624315 TGTAACAACC
* *
74624325 AGCACGAATGCTTTCGGGACTTAGCCCGGTTATAATAACC
1 AGCAC-AATGCCTTCGGGACTTAGCCCGGTTATAATAACT
* * *
74624365 CGTACGAATGCCTTCGGGACTTAACCCGGTTATAATAACT
1 AGCAC-AATGCCTTCGGGACTTAGCCCGGTTATAATAACT
* * * * *
74624405 AGCACAATTGCCTTC-GGATCTTAGTCTGGATATAGTCACT
1 AGCACAA-TGCCTTCGGGA-CTTAGCCCGGTTATAATAACT
74624445 AGCACAAATGCCTTCGG
1 AGCAC-AATGCCTTCGG
74624462 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
39 5 0.06
40 72 0.90
41 3 0.04
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
AGCACAATGCCTTCGGGACTTAGCCCGGTTATAATAACT
Found at i:74624462 original size:40 final size:40
Alignment explanation
Indices: 74624371--74624477 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
74624361 AACCCGTACG
** * * *
74624371 AATGCCTTCGGGA-CTTAACCCGGTTATAATAACTAGCACA
1 AATGCCTTC-GGATCTTAGTCCGGATATAGTCACTAGCACA
* *
74624411 ATTGCCTTCGGATCTTAGTCTGGATATAGTCACTAGCACA
1 AATGCCTTCGGATCTTAGTCCGGATATAGTCACTAGCACA
74624451 AATGCCTTCGGATCTTAGTCCGGATAT
1 AATGCCTTCGGATCTTAGTCCGGATAT
74624478 CATCCGAATA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 3 0.05
40 54 0.95
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (40 bp):
AATGCCTTCGGATCTTAGTCCGGATATAGTCACTAGCACA
Found at i:74625996 original size:13 final size:13
Alignment explanation
Indices: 74625978--74626003 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74625968 ATTTTTATTT
74625978 TTAACATAAAATA
1 TTAACATAAAATA
74625991 TTAACATAAAATA
1 TTAACATAAAATA
74626004 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:74631910 original size:40 final size:40
Alignment explanation
Indices: 74631865--74632032 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74631855 CGGAATATAA
74631865 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74631905 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74631945 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
74631985 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74632025 CCGGATAT
1 CCGGATAT
74632033 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74639903 original size:40 final size:40
Alignment explanation
Indices: 74639858--74640025 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74639848 CGGAATATAA
74639858 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74639898 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74639938 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
74639978 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74640018 CCGGATAT
1 CCGGATAT
74640026 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74643858 original size:40 final size:40
Alignment explanation
Indices: 74643809--74643908 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 40
74643799 CGGATGTAAC
*
74643809 AACCAGTACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 AACCAGTACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
74643849 AACCCGTACGAATGCTTTTGGGACTTAACCCGGTTATAAT
1 AACCAGTACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
74643889 AACTAGCAC-AATTGCCTTCG
1 AACCAGTACGAA-TGCCTTCG
74643909 AATCTTAGTC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 2 0.04
40 48 0.96
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
AACCAGTACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:74643954 original size:40 final size:40
Alignment explanation
Indices: 74643890--74643965 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
74643880 GGTTATAATA
*
74643890 ACTAGCACAATTGCCTTCGAATCTTAGTCCGGATATAGTG
1 ACTAGCACAATTGCCCTCGAATCTTAGTCCGGATATAGTG
*
74643930 ACTAGCAC-ATATGCCCTCGGATCTTAGTCCGGATAT
1 ACTAGCACAAT-TGCCCTCGAATCTTAGTCCGGATAT
74643966 CATCCGAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 2 0.06
40 31 0.94
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (40 bp):
ACTAGCACAATTGCCCTCGAATCTTAGTCCGGATATAGTG
Found at i:74645486 original size:13 final size:13
Alignment explanation
Indices: 74645468--74645493 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74645458 AGTTTTATTT
74645468 TTAACATAAAATA
1 TTAACATAAAATA
74645481 TTAACATAAAATA
1 TTAACATAAAATA
74645494 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:74651078 original size:37 final size:38
Alignment explanation
Indices: 74651037--74651117 Score: 119
Period size: 37 Copynumber: 2.2 Consensus size: 38
74651027 AAAAGTTGTG
74651037 CTTCTGCATTGATTGCTATTCAAACCAAATTTGA-TTT
1 CTTCTGCATTGATTGCTATTCAAACCAAATTTGATTTT
* * * *
74651074 CTTCTGCATTGATTGTTGTTCAAATCATATTTGATTTT
1 CTTCTGCATTGATTGCTATTCAAACCAAATTTGATTTT
74651112 CTTCTG
1 CTTCTG
74651118 GGTTTAGATA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
37 30 0.77
38 9 0.23
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.48
Consensus pattern (38 bp):
CTTCTGCATTGATTGCTATTCAAACCAAATTTGATTTT
Found at i:74655276 original size:39 final size:39
Alignment explanation
Indices: 74655232--74655307 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
74655222 CTTTTTTAAC
74655232 ATAGAGGAAATAGACGATATCTAAGCTGATAACAAAGTA
1 ATAGAGGAAATAGACGATATCTAAGCTGATAACAAAGTA
74655271 ATAGAGGAAATAGACGATATCTAAGCTGATAACAAAG
1 ATAGAGGAAATAGACGATATCTAAGCTGATAACAAAG
74655308 AAAGGGTGTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.49, C:0.11, G:0.21, T:0.20
Consensus pattern (39 bp):
ATAGAGGAAATAGACGATATCTAAGCTGATAACAAAGTA
Found at i:74658386 original size:39 final size:39
Alignment explanation
Indices: 74658329--74658526 Score: 308
Period size: 39 Copynumber: 5.1 Consensus size: 39
74658319 ATTCAAGACA
* * *
74658329 CTGGAAATGTATTCGGGCTAAAGTCTCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
74658368 CTAGAAATGTATCCGGGCTAATGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
74658407 CTGGAAATGTATCTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
74658446 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
74658485 TTGGAAATGTATCC-GGCTAAAGTTCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
74658523 CTGG
1 CTGG
74658527 TAATATAATT
Statistics
Matches: 146, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 25 0.17
39 121 0.83
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:74660016 original size:18 final size:18
Alignment explanation
Indices: 74659993--74660038 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
74659983 TTATTTGCTT
74659993 AAGGCTTACTAAGTTTTC
1 AAGGCTTACTAAGTTTTC
74660011 AAGGCTTACTAAGTTTTC
1 AAGGCTTACTAAGTTTTC
*
74660029 AAAGCTTACT
1 AAGGCTTACT
74660039 CTGTGTGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.37
Consensus pattern (18 bp):
AAGGCTTACTAAGTTTTC
Found at i:74661865 original size:7 final size:7
Alignment explanation
Indices: 74661855--74661880 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
74661845 AAGAGAGAAT
74661855 GATGAGG
1 GATGAGG
74661862 GATGAGG
1 GATGAGG
74661869 GATGAGG
1 GATGAGG
74661876 GATGA
1 GATGA
74661881 TTAAGAATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.54, T:0.15
Consensus pattern (7 bp):
GATGAGG
Found at i:74665771 original size:32 final size:32
Alignment explanation
Indices: 74665729--74665817 Score: 99
Period size: 32 Copynumber: 2.8 Consensus size: 32
74665719 CCGATCACAG
* * * * * *
74665729 TATCAATTGGGCCTAGCCCATCTTAGAATCAA
1 TATCAGTTGGGCCTAACCCATATCAAAACCAA
74665761 TATCAGTTGGGCCTAACCCATATCAAAACCAA
1 TATCAGTTGGGCCTAACCCATATCAAAACCAA
* *
74665793 TATCAGTTGGG-CTATCCCATTTCAA
1 TATCAGTTGGGCCTAACCCATATCAA
74665818 CTTCAAACCC
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 12 0.24
32 37 0.76
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (32 bp):
TATCAGTTGGGCCTAACCCATATCAAAACCAA
Found at i:74666322 original size:27 final size:27
Alignment explanation
Indices: 74666284--74666343 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
74666274 CCTATTACTC
74666284 GGCCCAAGTGGGCACACACGCTCATGT
1 GGCCCAAGTGGGCACACACGCTCATGT
*
74666311 GGCCCAAGTGGGCACACACGCTCGTGT
1 GGCCCAAGTGGGCACACACGCTCATGT
74666338 GGCCCA
1 GGCCCA
74666344 TTTAGCCCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.20, C:0.35, G:0.32, T:0.13
Consensus pattern (27 bp):
GGCCCAAGTGGGCACACACGCTCATGT
Found at i:74670279 original size:36 final size:36
Alignment explanation
Indices: 74670239--74670356 Score: 87
Period size: 36 Copynumber: 3.1 Consensus size: 36
74670229 ATCCTGCACT
74670239 TGAATAAAGCTTTTGAGAAACAGAAATTGGGTTTTA
1 TGAATAAAGCTTTTGAGAAACAGAAATTGGGTTTTA
* * * * * *
74670275 TGAATTTAGGATTTTAGGTGAAAAAATTGAAGA-T-GGATTTA
1 TGAA-TAAAGCTTTT--GAG-AAACA--GAA-ATTGGGTTTTA
* *
74670316 TGAAAAAAGCTTTTGAAAAACAGAAATTGGGTTTTA
1 TGAATAAAGCTTTTGAGAAACAGAAATTGGGTTTTA
74670352 TGAAT
1 TGAAT
74670357 TTAGGATTTT
Statistics
Matches: 58, Mismatches: 15, Indels: 18
0.64 0.16 0.20
Matches are distributed among these distances:
34 1 0.02
35 4 0.07
36 14 0.24
37 11 0.19
38 1 0.02
39 2 0.03
40 10 0.17
41 10 0.17
42 4 0.07
43 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.22, T:0.34
Consensus pattern (36 bp):
TGAATAAAGCTTTTGAGAAACAGAAATTGGGTTTTA
Found at i:74674718 original size:23 final size:23
Alignment explanation
Indices: 74674692--74674751 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
74674682 TCCATATTCA
*
74674692 AAACATACCAAATCATGC-TTCTC
1 AAACATACCAAATCAT-CATCCTC
* *
74674715 AAACATATCAATTCATCATCCTC
1 AAACATACCAAATCATCATCCTC
74674738 AAATCATACCAAAT
1 AAA-CATACCAAAT
74674752 ATACCAACTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 1 0.03
23 21 0.70
24 8 0.27
ACGTcount: A:0.43, C:0.28, G:0.02, T:0.27
Consensus pattern (23 bp):
AAACATACCAAATCATCATCCTC
Found at i:74682278 original size:40 final size:40
Alignment explanation
Indices: 74682135--74682314 Score: 208
Period size: 40 Copynumber: 4.5 Consensus size: 40
74682125 ATGATGTCCA
* * * *
74682135 GGCTAAGTCCCGAAGGC-TTTTTGCTAAGTGACTATAT-CG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* *
74682174 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
74682214 GGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
74682253 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
74682293 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
74682315 AATGAGTAGC
Statistics
Matches: 120, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
39 56 0.47
40 62 0.52
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:74682336 original size:79 final size:79
Alignment explanation
Indices: 74682183--74682337 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
74682173 GGACTAAGAT
* **
74682183 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTCACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAA
74682248 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
74682262 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAGT-AGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTCA-C
*
74682325 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
74682338 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTCACTAA
ATCCGGGTTAAGTC
Found at i:74685000 original size:39 final size:39
Alignment explanation
Indices: 74684943--74685066 Score: 149
Period size: 39 Copynumber: 3.2 Consensus size: 39
74684933 GGACTTTAGC
* * * * * *
74684943 CCGGACATATTTCAAGCACGTAGCCTGCAGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* * *
74684982 CCGGTTATAATTCCAGCACATAGCCTGTGGACCCTAAAT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
74685021 CCGAATATAATTCCAGCACATAGCCTGCGGACCCTAAGC
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
74685060 CCGGATA
1 CCGGATA
74685067 AACATCACTG
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:74694864 original size:48 final size:48
Alignment explanation
Indices: 74694793--74694898 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
74694783 CAAGATAAAT
* * *
74694793 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
74694841 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
74694889 ATGTGTATAT
1 ATATGTATAT
74694899 ATTGTGGCCG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:74695079 original size:37 final size:37
Alignment explanation
Indices: 74695028--74695105 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
74695018 CTTGGAAATA
* *
74695028 TATT-CCGGGTAAGACCCGATGGCTACGTGTGGAGAT
1 TATTCCCGGATAAGACCCGATGACTACGTGTGGAGAT
*
74695064 TATTCCCGGATAAGACCCGATGACTACGTGTGGGGAT
1 TATTCCCGGATAAGACCCGATGACTACGTGTGGAGAT
74695101 TATTC
1 TATTC
74695106 GAGCTAAAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 4 0.11
37 34 0.89
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (37 bp):
TATTCCCGGATAAGACCCGATGACTACGTGTGGAGAT
Found at i:74697255 original size:39 final size:39
Alignment explanation
Indices: 74697202--74697295 Score: 116
Period size: 39 Copynumber: 2.4 Consensus size: 39
74697192 CCGGACATAT
** * **
74697202 TTCCAGCATGTAGCCTGTAGACCTTAAGTCCGAATATAA
1 TTCCAGCACATAGCCTGCAGACCCCAAGTCCGAATATAA
* * *
74697241 TTCTAGCACATAGCCTGCGGACCCCAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCAGACCCCAAGTCCGAATATAA
74697280 TTCCAGCACATAGCCT
1 TTCCAGCACATAGCCT
74697296 ACGGACCCTA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCAGACCCCAAGTCCGAATATAA
Found at i:74697301 original size:39 final size:39
Alignment explanation
Indices: 74697227--74697315 Score: 133
Period size: 39 Copynumber: 2.3 Consensus size: 39
74697217 TGTAGACCTT
* * *
74697227 AAGTCCGAATATAATTCTAGCACATAGCCTGCGGACCCC
1 AAGTCCGGATATAATTCCAGCACATAGCCTACGGACCCC
*
74697266 AAGTCCGGATATAATTCCAGCACATAGCCTACGGACCCT
1 AAGTCCGGATATAATTCCAGCACATAGCCTACGGACCCC
*
74697305 AAGTTCGGATA
1 AAGTCCGGATA
74697316 AACATCACTG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (39 bp):
AAGTCCGGATATAATTCCAGCACATAGCCTACGGACCCC
Found at i:74704536 original size:27 final size:28
Alignment explanation
Indices: 74704480--74704549 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
74704470 AAACTTGTAC
74704480 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
74704508 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
74704535 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74704550 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:74704560 original size:27 final size:27
Alignment explanation
Indices: 74704480--74704561 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
74704470 AAACTTGTAC
* *
74704480 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
74704508 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
74704535 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
74704562 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:74707670 original size:16 final size:16
Alignment explanation
Indices: 74707649--74707679 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
74707639 TTTTGGCCTT
74707649 GATGAATTTGATGTTC
1 GATGAATTTGATGTTC
74707665 GATGAATTTGATGTT
1 GATGAATTTGATGTT
74707680 ATTCTTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.45
Consensus pattern (16 bp):
GATGAATTTGATGTTC
Found at i:74712521 original size:27 final size:28
Alignment explanation
Indices: 74712465--74712534 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
74712455 AAACTTGTAC
74712465 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
74712493 AGCACTAAGTGTGCTAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
74712520 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74712535 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:74712545 original size:27 final size:27
Alignment explanation
Indices: 74712465--74712546 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
74712455 AAACTTGTAC
* *
74712465 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * * *
74712493 AGCACTAAGTGTGCTAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
74712520 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
74712547 GCTTTTGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.62
28 17 0.36
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:74714399 original size:39 final size:39
Alignment explanation
Indices: 74714318--74714470 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
74714308 TATGGTAACC
* * * * *
74714318 CGCACAAATGCCTTTGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
74714358 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
74714397 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
74714436 CACACAATTGCCTTCGGGCTTAGCCCGGATATCAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAT
74714471 TCGAACATTC
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 89 0.85
40 16 0.15
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:74724240 original size:45 final size:44
Alignment explanation
Indices: 74724171--74724348 Score: 239
Period size: 45 Copynumber: 4.0 Consensus size: 44
74724161 GAATCAAATA
* * * *
74724171 CGATGCCAATGTCCCAGACATGGTCTTACACATAACCATATATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACACA-AAACACATATAT
*
74724216 CGATGCCAACGTCCTAGACGTGGTCTTACACGAAAACACATATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACAC-AAAACACATATAT
*
74724261 CGATGCCAACGTCCCAGACGTGGTCTTACATGAAAACACATATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACA-CAAAACACATATAT
* * *
74724306 CGATGCCAACGTCCCAAATGTGATCTTACACAAAAACACATAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACAC-AAAACACATAT
74724349 CAGAATCCTA
Statistics
Matches: 119, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
45 118 0.99
46 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (44 bp):
CGATGCCAACGTCCCAGACGTGGTCTTACACAAAACACATATAT
Found at i:74724753 original size:15 final size:15
Alignment explanation
Indices: 74724730--74724760 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
74724720 TCAAAAATTC
74724730 CAATACAAAACATAT
1 CAATACAAAACATAT
*
74724745 CAATCCAAAACATAT
1 CAATACAAAACATAT
74724760 C
1 C
74724761 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:74725292 original size:14 final size:15
Alignment explanation
Indices: 74725275--74725303 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
74725265 CACGAAAATT
74725275 TCACACAT-ATAAAC
1 TCACACATAATAAAC
74725289 TCACACATAATAAAC
1 TCACACATAATAAAC
74725304 ACAGAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (15 bp):
TCACACATAATAAAC
Found at i:74725755 original size:27 final size:27
Alignment explanation
Indices: 74725717--74725770 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
74725707 CACCATGAGA
74725717 TTGTTTGCTAGTAGCTCTGGTGATGGT
1 TTGTTTGCTAGTAGCTCTGGTGATGGT
74725744 TTGTTTGCTAGTAGCTCTGGTGATGGT
1 TTGTTTGCTAGTAGCTCTGGTGATGGT
74725771 GGGTCTTCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.11, C:0.11, G:0.33, T:0.44
Consensus pattern (27 bp):
TTGTTTGCTAGTAGCTCTGGTGATGGT
Found at i:74737070 original size:24 final size:24
Alignment explanation
Indices: 74737038--74737085 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
74737028 ACGACTTAGT
*
74737038 CTCGATTATTTGAGATGGTACTAA
1 CTCGATTATTTGAGATGGCACTAA
*
74737062 CTCGGTTATTTGAGATGGCACTAA
1 CTCGATTATTTGAGATGGCACTAA
74737086 GTGTGCGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (24 bp):
CTCGATTATTTGAGATGGCACTAA
Found at i:74739595 original size:27 final size:28
Alignment explanation
Indices: 74739541--74739596 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
74739531 CAAGGGAAAA
*
74739541 TTAAAATTTTGAAAACTGATCCAATATG
1 TTAAAATTTTGAAAACCGATCCAATATG
*
74739569 TTAAAATTTTG-AAACCGATCCAGTATG
1 TTAAAATTTTGAAAACCGATCCAATATG
74739596 T
1 T
74739597 GATATTCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 15 0.58
28 11 0.42
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (28 bp):
TTAAAATTTTGAAAACCGATCCAATATG
Found at i:74741627 original size:56 final size:55
Alignment explanation
Indices: 74741541--74741719 Score: 268
Period size: 56 Copynumber: 3.2 Consensus size: 55
74741531 CAATGGAATC
* * * *
74741541 GATATATGTGTGCGAGTAAAACCACATTTAATACGTTGGCATCGATATGTGATTT
1 GATATATGTGTGTGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTT
*
74741596 AGATATATGTGTGTAAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTT
1 -GATATATGTGTGTGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTT
*
74741652 CGATATATGTGTGTGAGTAAGACCACGTTTATTATGTTGGCATCGATATGTGATTCT
1 -GATATATGTGTGTGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATT-T
*
74741709 GATTTATGTGT
1 GATATATGTGT
74741720 ACCAGTAAGA
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
56 112 0.99
57 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (55 bp):
GATATATGTGTGTGAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATTT
Found at i:74741749 original size:112 final size:112
Alignment explanation
Indices: 74741539--74741762 Score: 263
Period size: 112 Copynumber: 2.0 Consensus size: 112
74741529 GACAATGGAA
74741539 TCGATATATGTGTGCGAGTAAAACCACATTTAATACGTTGGCATCGATATGTGATTTAGATATAT
1 TCGATATATGTGTGCGAGTAAAACCACATTTAATACGTTGGCATCGATATGTGATTTAGATATAT
** * * *** *
74741604 GTGTGTAAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATT
66 GTGTACAAGTAAGACCACGTCTAAGACAATGGCATCAATATGTGATT
* * * * * *
74741651 TCGATATATGTGTGTGAGTAAGACCACGTTTATTATGTTGGCATCGATATGTGATTCT-GATTTA
1 TCGATATATGTGTGCGAGTAAAACCACATTTAATACGTTGGCATCGATATGTGATT-TAGATATA
* **
74741715 TGTGTACCAGTAAGACC-CTGTCTGGGACAATGGCATCAATATGTGATT
65 TGTGTACAAGTAAGACCAC-GTCTAAGACAATGGCATCAATATGTGATT
74741763 ACATGTAAGA
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
111 1 0.01
112 91 0.98
113 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (112 bp):
TCGATATATGTGTGCGAGTAAAACCACATTTAATACGTTGGCATCGATATGTGATTTAGATATAT
GTGTACAAGTAAGACCACGTCTAAGACAATGGCATCAATATGTGATT
Found at i:74745272 original size:37 final size:37
Alignment explanation
Indices: 74745218--74745308 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
74745208 AACTTGGAAA
*
74745218 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
74745256 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
74745293 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
74745309 TTCGTAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:74761277 original size:50 final size:49
Alignment explanation
Indices: 74761152--74761378 Score: 219
Period size: 50 Copynumber: 4.6 Consensus size: 49
74761142 AGCTGAAGTT
* * * **
74761152 ATCTGATACGCATAGTAGCGTGCACTTAGTACTACACATGCAAC-CAAC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACTCAAC
* * *
74761200 AATC-CAGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTCATC
1 -ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CTCAAC
*
74761251 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACTC-AA--C
* * * *
74761302 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACTTAAC
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACATGTGACTCAAC
* *
74761351 AGTATGGTACACGTAGTAGCCTGCACTT
1 A-TCTGATACACGTAGTAGCCTGCACTT
74761379 TGATCTGCAC
Statistics
Matches: 147, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
48 3 0.02
49 37 0.25
50 62 0.42
51 44 0.30
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACTCAAC
Found at i:74776503 original size:29 final size:29
Alignment explanation
Indices: 74776469--74776658 Score: 89
Period size: 29 Copynumber: 6.6 Consensus size: 29
74776459 TACTCGATTT
* * *
74776469 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
74776498 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
74776527 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * *** * *
74776556 TGCACACTCAGTGCCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
74776585 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
74776614 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
74776643 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
74776659 ATCTCGTCAC
Statistics
Matches: 139, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
28 1 0.01
29 137 0.99
30 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:74776561 original size:58 final size:58
Alignment explanation
Indices: 74776528--74776658 Score: 244
Period size: 58 Copynumber: 2.3 Consensus size: 58
74776518 CTTCGAGCTC
*
74776528 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
*
74776586 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
74776644 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
74776659 ATCTCGTCAC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.30
Consensus pattern (58 bp):
GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
Found at i:74776590 original size:87 final size:87
Alignment explanation
Indices: 74776499--74776658 Score: 241
Period size: 87 Copynumber: 1.8 Consensus size: 87
74776489 ATTTAAGCCC
* *
74776499 GCACACACAGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACAC
1 GCACACACAGTGCCATACACTTCCAGCAT-GCACACTTAGTGCCATATATTTCCAGCATGCACAC
74776563 TCAGTGCCATATTTTTCCAGCAT
65 TCAGTGCCATATTTTTCCAGCAT
** * *
74776586 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
1 GCACACACAGTGCCATACACTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
*
74776651 TAGTGCCA
66 CAGTGCCA
74776659 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
87 64 0.98
88 1 0.02
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (87 bp):
GCACACACAGTGCCATACACTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
CAGTGCCATATTTTTCCAGCAT
Found at i:74784428 original size:29 final size:29
Alignment explanation
Indices: 74784396--74784554 Score: 291
Period size: 29 Copynumber: 5.5 Consensus size: 29
74784386 TTCGAGCTCA
74784396 CACACTTAGTGCCATATATTTCCAGCATG
1 CACACTTAGTGCCATATATTTCCAGCATG
* * *
74784425 CACACTCAGTGCCAAATTTTTCCAGCATG
1 CACACTTAGTGCCATATATTTCCAGCATG
74784454 CACACTTAGTGCCATATATTTCCAGCATG
1 CACACTTAGTGCCATATATTTCCAGCATG
74784483 CACACTTAGTGCCATATATTTCCAGCATG
1 CACACTTAGTGCCATATATTTCCAGCATG
74784512 CACACTTAGTGCCATATATTTCCAGCATG
1 CACACTTAGTGCCATATATTTCCAGCATG
74784541 CACACTTAGTGCCA
1 CACACTTAGTGCCA
74784555 ATCTCGTCAC
Statistics
Matches: 124, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 124 1.00
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
CACACTTAGTGCCATATATTTCCAGCATG
Found at i:74784457 original size:87 final size:87
Alignment explanation
Indices: 74784374--74784554 Score: 274
Period size: 87 Copynumber: 2.1 Consensus size: 87
74784364 CCGCACACAC
* *
74784374 AGTGCCATACCCTTCGAGC-TCACACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCC
1 AGTGCCATACACTTCCAGCAT-ACACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCC
*
74784438 AAATTTTTCCAGCATGCACACTT
65 AAATATTTCCAGCATGCACACTT
* * * *
74784461 AGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCA
1 AGTGCCATACACTTCCAGCATACACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCA
*
74784526 TATATTTCCAGCATGCACACTT
66 AATATTTCCAGCATGCACACTT
74784548 AGTGCCA
1 AGTGCCA
74784555 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
87 84 0.99
88 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (87 bp):
AGTGCCATACACTTCCAGCATACACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCA
AATATTTCCAGCATGCACACTT
Found at i:74791888 original size:29 final size:29
Alignment explanation
Indices: 74791855--74791919 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
74791845 GTGACGAGAT
*
74791855 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
74791884 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
74791913 CGGCACT
1 TGGCACT
74791920 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:74797538 original size:120 final size:122
Alignment explanation
Indices: 74797369--74797594 Score: 314
Period size: 122 Copynumber: 1.9 Consensus size: 122
74797359 TCAACCATAA
* * **
74797369 TAACAATGAGAATGAGAATAGAAATGTTATGGGTATGAGGTTTTACTAAT-CTCAATTTAACAC-
1 TAACAATGAGAATAAGAATAGAAATGTCATGGGTATGAGGTGCTACTAATACTCAATTTAACACG
* *
74797432 AGAATGTATGATAACTAACCTAGGAATGCAAATTAAATGATCGACATTGGCATGGTAC
66 A-AATGTATGATAACTAAACTAAGAATGCAAATTAAATGATCGACATTGGCATGGTAC
* * * **
74797490 TAAC-ATGAGAATAAGCATAGTAATGTCATGGGTATGAGGTGCTCCTAATAACTTGATTTAACAC
1 TAACAATGAGAATAAGAATAGAAATGTCATGGGTATGAGGTGCTACTAAT-ACTCAATTTAACAC
74797554 GAAATGTATGATAACTAAACTAAGAATGCAAATTAAATGAT
65 GAAATGTATGATAACTAAACTAAGAATGCAAATTAAATGAT
74797595 AGAAAAATGA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
120 38 0.42
121 4 0.04
122 48 0.53
123 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.29
Consensus pattern (122 bp):
TAACAATGAGAATAAGAATAGAAATGTCATGGGTATGAGGTGCTACTAATACTCAATTTAACACG
AAATGTATGATAACTAAACTAAGAATGCAAATTAAATGATCGACATTGGCATGGTAC
Found at i:74799024 original size:20 final size:20
Alignment explanation
Indices: 74798999--74799037 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74798989 AGATTTTCGT
* *
74798999 AATTTTTGAGAATTTGGTAA
1 AATTTTTAAAAATTTGGTAA
74799019 AATTTTTAAAAATTTGGTA
1 AATTTTTAAAAATTTGGTA
74799038 TTTGGTTGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (20 bp):
AATTTTTAAAAATTTGGTAA
Found at i:74800908 original size:5 final size:5
Alignment explanation
Indices: 74800892--74800958 Score: 55
Period size: 5 Copynumber: 13.2 Consensus size: 5
74800882 CATGAGATTT
* * * *
74800892 TGATA T-ATA TGATA TGACA TGATA TGACA TGATA TGCACA TGATA TGTTA
1 TGATA TGATA TGATA TGATA TGATA TGATA TGATA TG-ATA TGATA TGATA
* *
74800942 TGAGA TGCACA TGATA T
1 TGATA TG-ATA TGATA T
74800959 ACTCATTATA
Statistics
Matches: 48, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
4 4 0.08
5 36 0.75
6 8 0.17
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.34
Consensus pattern (5 bp):
TGATA
Found at i:74800915 original size:10 final size:10
Alignment explanation
Indices: 74800900--74800958 Score: 73
Period size: 10 Copynumber: 5.7 Consensus size: 10
74800890 TTTGATATAT
74800900 ATGATATGAC
1 ATGATATGAC
74800910 ATGATATGAC
1 ATGATATGAC
74800920 ATGATATGCAC
1 ATGATATG-AC
**
74800931 ATGATATGTT
1 ATGATATGAC
*
74800941 ATGAGATGCAC
1 ATGATATG-AC
74800952 ATGATAT
1 ATGATAT
74800959 ACTCATTATA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
10 25 0.61
11 16 0.39
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (10 bp):
ATGATATGAC
Found at i:74800934 original size:21 final size:21
Alignment explanation
Indices: 74800892--74800958 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
74800882 CATGAGATTT
74800892 TGATAT-ATATGATATG-ACA
1 TGATATGATATGATATGCACA
*
74800911 TGATATGACATGATATGCACA
1 TGATATGATATGATATGCACA
* *
74800932 TGATATGTTATGAGATGCACA
1 TGATATGATATGATATGCACA
74800953 TGATAT
1 TGATAT
74800959 ACTCATTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.14
20 9 0.21
21 27 0.64
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.34
Consensus pattern (21 bp):
TGATATGATATGATATGCACA
Found at i:74806996 original size:20 final size:20
Alignment explanation
Indices: 74806971--74807009 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74806961 GGATTTTTGT
*
74806971 AATTTTCAAGAATTTGGTAA
1 AATTTTCAAAAATTTGGTAA
*
74806991 AATTTTTAAAAATTTGGTA
1 AATTTTCAAAAATTTGGTA
74807010 TTTGGTTGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.44
Consensus pattern (20 bp):
AATTTTCAAAAATTTGGTAA
Found at i:74807541 original size:26 final size:26
Alignment explanation
Indices: 74807512--74807563 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
74807502 CTTTGTTTAA
74807512 ACATCAGAGAGTGATTCTTTTTCTCT
1 ACATCAGAGAGTGATTCTTTTTCTCT
74807538 ACATCAGAGAGTGATTCTTTTTCTCT
1 ACATCAGAGAGTGATTCTTTTTCTCT
74807564 CCTTCTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.42
Consensus pattern (26 bp):
ACATCAGAGAGTGATTCTTTTTCTCT
Found at i:74808852 original size:24 final size:26
Alignment explanation
Indices: 74808807--74808857 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
74808797 CTTAAAATAT
* * *
74808807 GAAAAATGACTATTTTGGCCC-TAGG
1 GAAAAATGACCATTATGACCCTTAGG
74808832 GAAAAATGACCATTAT-ACCCTTAGG
1 GAAAAATGACCATTATGACCCTTAGG
74808857 G
1 G
74808858 TTTAATTAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 3 0.14
25 19 0.86
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (26 bp):
GAAAAATGACCATTATGACCCTTAGG
Found at i:74808908 original size:10 final size:10
Alignment explanation
Indices: 74808887--74808932 Score: 76
Period size: 10 Copynumber: 4.6 Consensus size: 10
74808877 CATGAGATTT
74808887 TGATAT-ACA
1 TGATATGACA
74808896 TGATATGACA
1 TGATATGACA
74808906 TGATATGACA
1 TGATATGACA
74808916 TGATATGCACA
1 TGATATG-ACA
74808927 TGATAT
1 TGATAT
74808933 CTTATGAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.57
11 9 0.26
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (10 bp):
TGATATGACA
Found at i:74808929 original size:21 final size:20
Alignment explanation
Indices: 74808887--74808955 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 20
74808877 CATGAGATTT
74808887 TGATATACATGATATG-ACA
1 TGATATACATGATATGCACA
74808906 TGATATGACATGATATGCACA
1 TGATAT-ACATGATATGCACA
*
74808927 TGATAT-CTTATGAGATGCACA
1 TGATATAC--ATGATATGCACA
74808948 TGATATAC
1 TGATATAC
74808956 TCATTATATG
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
19 7 0.16
20 10 0.23
21 26 0.59
22 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (20 bp):
TGATATACATGATATGCACA
Done.