Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 246 of 335
Found at i:74811749 original size:43 final size:43
Alignment explanation
Indices: 74811701--74811812 Score: 188
Period size: 43 Copynumber: 2.6 Consensus size: 43
74811691 CCGGCATTAC
74811701 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
74811744 GCCTGCTAGGCACGAAGGCCAGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
74811787 GCCTACTAGGCATGAAGGCCCAAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
74811813 TAATACCAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.32, C:0.32, G:0.25, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:74811861 original size:38 final size:38
Alignment explanation
Indices: 74811810--74811905 Score: 138
Period size: 38 Copynumber: 2.5 Consensus size: 38
74811800 GAAGGCCCAA
* * * *
74811810 ATATAATACCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGAAGCATGCGGGATTTAACCCGG
74811848 ATATAATACCAGCACGAAGCATGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCATGCGGGATTTAACCCGG
**
74811886 ATATTTTACCAGCACGAAGC
1 ATATAATACCAGCACGAAGC
74811906 CTACGGGTCT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCATGCGGGATTTAACCCGG
Found at i:74821481 original size:42 final size:43
Alignment explanation
Indices: 74821435--74821547 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 43
74821425 TCTCATATCG
*
74821435 ATGCCAATGTCCCAAACATGGTCTTACACGAAATCATA-TA-A
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATAGTACA
* * *
74821476 CATGCCAATGTCCCAGACATGGTGTTACATGTAATCATAGTACA
1 -ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATAGTACA
* *
74821520 ATGCCAATGTCCCAGGCATGTTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
74821548 TGTAATCCCA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
42 34 0.55
43 27 0.44
44 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATAGTACA
Found at i:74821551 original size:43 final size:42
Alignment explanation
Indices: 74821393--74821554 Score: 168
Period size: 43 Copynumber: 3.8 Consensus size: 42
74821383 AGCTCATACA
* * * * *
74821393 ATGCC-ATATCCCAGATATAGTCTTACATGTTATC-TCATATC
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAT-ATAAC
* * *
74821434 GATGCCAATGTCCCAAACATGGTCTTACACGAAATCATATAAC
1 -ATGCCAATGTCCCAGACATGGTCTTACATGTAATCATATAAC
*
74821477 ATGCCAATGTCCCAGACATGGTGTTACATGTAATCATAGT-AC
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCATA-TAAC
* *
74821519 AATGCCAATGTCCCAGGCATGTTCTTACATGTAATC
1 -ATGCCAATGTCCCAGACATGGTCTTACATGTAATC
74821555 CCATCTCGGT
Statistics
Matches: 101, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 41 0.41
43 59 0.58
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCATATAAC
Found at i:74832737 original size:26 final size:26
Alignment explanation
Indices: 74832703--74832770 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 26
74832693 CGTAGCAAGT
* *
74832703 CTACTAGTAACAGTATCATAGAAAAG
1 CTACCAGTAACAGTATCACAGAAAAG
* * * *
74832729 CTGCCAGTAACAATATCGCAGCAAAG
1 CTACCAGTAACAGTATCACAGAAAAG
74832755 CTACCAGTAACAGTAT
1 CTACCAGTAACAGTAT
74832771 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21
Consensus pattern (26 bp):
CTACCAGTAACAGTATCACAGAAAAG
Found at i:74832787 original size:27 final size:27
Alignment explanation
Indices: 74832749--74832813 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
74832739 CAATATCGCA
* *
74832749 GCAAAGCTACCAGTAACAGTATATGTG
1 GCAAAGCCACCAGAAACAGTATATGTG
*
74832776 GCAAAGCCACCAGAAATAGTATATGTG
1 GCAAAGCCACCAGAAACAGTATATGTG
**
74832803 GCGGAGCCACC
1 GCAAAGCCACC
74832814 GGTATCATAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
GCAAAGCCACCAGAAACAGTATATGTG
Found at i:74834016 original size:20 final size:20
Alignment explanation
Indices: 74833991--74834028 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74833981 GTTTATTCGC
*
74833991 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
74834011 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
74834029 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:74841927 original size:20 final size:20
Alignment explanation
Indices: 74841902--74841939 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74841892 GTTTATTCGC
*
74841902 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
74841922 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
74841940 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:74846462 original size:27 final size:24
Alignment explanation
Indices: 74846432--74846480 Score: 62
Period size: 27 Copynumber: 1.9 Consensus size: 24
74846422 AAAATTATTT
*
74846432 TCTGTGATTATTTTGTGTGAATTTATA
1 TCTGTGA-AATTTT-TGTG-ATTTATA
74846459 TCTGTGAAATTTTTGTGATTTA
1 TCTGTGAAATTTTTGTGATTTA
74846481 ATTTTGTCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 5 0.24
25 4 0.19
26 5 0.24
27 7 0.33
ACGTcount: A:0.22, C:0.04, G:0.18, T:0.55
Consensus pattern (24 bp):
TCTGTGAAATTTTTGTGATTTATA
Found at i:74852491 original size:30 final size:30
Alignment explanation
Indices: 74852457--74852517 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74852447 TCCTTAACTC
74852457 AAACTTTGAAAAAATTACAATTTTGCCCCT
1 AAACTTTGAAAAAATTACAATTTTGCCCCT
* * * * *
74852487 AAACTTTTACATATTTACACTTTTGCCCCT
1 AAACTTTGAAAAAATTACAATTTTGCCCCT
74852517 A
1 A
74852518 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (30 bp):
AAACTTTGAAAAAATTACAATTTTGCCCCT
Found at i:74853655 original size:43 final size:41
Alignment explanation
Indices: 74853607--74853761 Score: 125
Period size: 42 Copynumber: 3.6 Consensus size: 41
74853597 TCCCGAACGT
* * *
74853607 GGTCTTATATGTAATTCAGTATCGATGCCTTTGTCCTAGACAG
1 GGTCTTATACGTAATTCAG-ATCGATGCCTATGTCC-AGACAC
* * *
74853650 GGTCTTATACG-AAATCAGATACGATGCCGATGTCCCAGACAT
1 GGTCTTATACGTAATTCAGAT-CGATGCCTATGT-CCAGACAC
* * * *
74853692 GGTCTTACACGTAAATTTCAAATCGAGGCCTGTGTCCAGACAC
1 GGTCTTATACGT-AA-TTCAGATCGATGCCTATGTCCAGACAC
*
74853735 GGTCTTACACG-ATATCTCAGATCGATG
1 GGTCTTATACGTA-AT-TCAGATCGATG
74853762 TCAACGTTCC
Statistics
Matches: 91, Mismatches: 14, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
41 4 0.04
42 41 0.45
43 30 0.33
44 11 0.12
45 5 0.05
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (41 bp):
GGTCTTATACGTAATTCAGATCGATGCCTATGTCCAGACAC
Found at i:74855017 original size:23 final size:23
Alignment explanation
Indices: 74854978--74855026 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
74854968 GTTTGGTATG
*
74854978 TATTTTATGTTAAATGTA-ATCAT
1 TATTTTATGGTAAATGTATAT-AT
74855001 TATTTTA-GGTAAGATGTATATAT
1 TATTTTATGGTAA-ATGTATATAT
74855024 TAT
1 TAT
74855027 ATGTATGCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 4 0.17
23 17 0.74
24 2 0.09
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.51
Consensus pattern (23 bp):
TATTTTATGGTAAATGTATATAT
Found at i:74856756 original size:33 final size:33
Alignment explanation
Indices: 74856696--74856758 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
74856686 AGTGACAGTC
* *
74856696 TGGGCCTGAGCCCTATTCAGAAACAATACAAAG
1 TGGGCCTGAGCCCAATACAGAAACAATACAAAG
* * *
74856729 TGGGCCTTAGCCCAATACAGTATCAATACA
1 TGGGCCTGAGCCCAATACAGAAACAATACA
74856759 GTACAATAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (33 bp):
TGGGCCTGAGCCCAATACAGAAACAATACAAAG
Found at i:74856894 original size:26 final size:26
Alignment explanation
Indices: 74856863--74856938 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 26
74856853 ACCAATATTG
* *
74856863 CAGCAAGGCTGCCAATAACAGTATCA
1 CAGCAAAGCTGCTAATAACAGTATCA
* *
74856889 TAGCAAAGC-GACTAGTAACAGTATCA
1 CAGCAAAGCTG-CTAATAACAGTATCA
*
74856915 CAACAAAGCTGCTAATAACAGTAT
1 CAGCAAAGCTGCTAATAACAGTAT
74856939 ATGTGGCAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
25 1 0.02
26 39 0.95
27 1 0.02
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.18
Consensus pattern (26 bp):
CAGCAAAGCTGCTAATAACAGTATCA
Found at i:74859288 original size:13 final size:13
Alignment explanation
Indices: 74859272--74859304 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74859262 TTTAATTAAA
*
74859272 TTAGTTAATTAGT
1 TTAGATAATTAGT
74859285 TTAGATAATTAGT
1 TTAGATAATTAGT
74859298 TTA-ATAA
1 TTAGATAA
74859305 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:74865179 original size:28 final size:29
Alignment explanation
Indices: 74865147--74865244 Score: 94
Period size: 28 Copynumber: 3.4 Consensus size: 29
74865137 TAATAAGCCT
*
74865147 GCACACTTAGTGCTTA-ATAGTCGAACTC
1 GCACACTTAGTGCTTACATAATCGAACTC
* * *
74865175 GCACACTTAGTGC-TATATAATCAAACTT
1 GCACACTTAGTGCTTACATAATCGAACTC
* * * *
74865203 GCATACTTAGTGCTGTACA-ATTTGAACCC
1 GCACACTTAGTGCT-TACATAATCGAACTC
74865232 GCACACTTAGTGC
1 GCACACTTAGTGC
74865245 CAATTTGTGA
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
27 2 0.04
28 34 0.61
29 17 0.30
30 3 0.05
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCTTACATAATCGAACTC
Found at i:74877022 original size:44 final size:44
Alignment explanation
Indices: 74876974--74877111 Score: 140
Period size: 44 Copynumber: 3.1 Consensus size: 44
74876964 GATTAGACAA
74876974 AGCTATAATAATTTTGCACACTTAGTGCCATCTCAATTAACCGG
1 AGCTATAATAATTTTGCACACTTAGTGCCATCTCAATTAACCGG
* * * * * * **
74877018 AGCTAT-TTCAGTATCGCACACTTAGTG-C-TTTAAAGATTAGA-CAA
1 AGCTATAAT-AATTTTGCACACTTAGTGCCATCT-CA-ATTA-ACCGG
74877062 AGCTATAATAATTTTGCACACTTAGTGCCATCTCAATTAACCGG
1 AGCTATAATAATTTTGCACACTTAGTGCCATCTCAATTAACCGG
74877106 AGCTAT
1 AGCTAT
74877112 TTCAGTATCG
Statistics
Matches: 70, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 58 0.83
45 4 0.06
46 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (44 bp):
AGCTATAATAATTTTGCACACTTAGTGCCATCTCAATTAACCGG
Found at i:74877094 original size:88 final size:88
Alignment explanation
Indices: 74876945--74877133 Score: 369
Period size: 88 Copynumber: 2.1 Consensus size: 88
74876935 TTAAACATCT
74876945 GCACACTTAGTGCTTCAAAGATTAGACAAAGCTATAATAATTTTGCACACTTAGTGCCATCTCAA
1 GCACACTTAGTGCTTCAAAGATTAGACAAAGCTATAATAATTTTGCACACTTAGTGCCATCTCAA
74877010 TTAACCGGAGCTATTTCAGTATC
66 TTAACCGGAGCTATTTCAGTATC
*
74877033 GCACACTTAGTGCTTTAAAGATTAGACAAAGCTATAATAATTTTGCACACTTAGTGCCATCTCAA
1 GCACACTTAGTGCTTCAAAGATTAGACAAAGCTATAATAATTTTGCACACTTAGTGCCATCTCAA
74877098 TTAACCGGAGCTATTTCAGTATC
66 TTAACCGGAGCTATTTCAGTATC
74877121 GCACACTTAGTGC
1 GCACACTTAGTGC
74877134 CTCATATAGC
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 100 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (88 bp):
GCACACTTAGTGCTTCAAAGATTAGACAAAGCTATAATAATTTTGCACACTTAGTGCCATCTCAA
TTAACCGGAGCTATTTCAGTATC
Found at i:74877125 original size:44 final size:44
Alignment explanation
Indices: 74876989--74877134 Score: 156
Period size: 44 Copynumber: 3.3 Consensus size: 44
74876979 TAATAATTTT
74876989 GCACACTTAGTGCCATCTCAATTAACCGGAGCTATTTCAGTATC
1 GCACACTTAGTGCCATCTCAATTAACCGGAGCTATTTCAGTATC
* * ** * * * *
74877033 GCACACTTAGTG-C-TTTAAAGATTAGA-CAAAGCTATAAT-AATTTT
1 GCACACTTAGTGCCATCT-CA-ATTA-ACCGGAGCTAT-TTCAGTATC
74877077 GCACACTTAGTGCCATCTCAATTAACCGGAGCTATTTCAGTATC
1 GCACACTTAGTGCCATCTCAATTAACCGGAGCTATTTCAGTATC
74877121 GCACACTTAGTGCC
1 GCACACTTAGTGCC
74877135 TCATATAGCC
Statistics
Matches: 78, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 66 0.85
45 4 0.05
46 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (44 bp):
GCACACTTAGTGCCATCTCAATTAACCGGAGCTATTTCAGTATC
Found at i:74878446 original size:19 final size:20
Alignment explanation
Indices: 74878422--74878467 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
74878412 ATAACAATTA
74878422 ATAATTTATAT-ATTTTTTT
1 ATAATTTATATAATTTTTTT
*
74878441 ATAATTT-TCTAATTTTTTT
1 ATAATTTATATAATTTTTTT
*
74878460 ATATTTTA
1 ATAATTTA
74878468 GTAATTTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 21 0.91
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (20 bp):
ATAATTTATATAATTTTTTT
Found at i:74879121 original size:19 final size:21
Alignment explanation
Indices: 74879073--74879121 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 21
74879063 ATTTTTAATT
*
74879073 ATTTTTATATAATGTTCTATA
1 ATTTTTATAAAATGTTCTATA
*
74879094 A--TTTCTAAAATGTT-T-TA
1 ATTTTTATAAAATGTTCTATA
74879111 ATTTTTATAAA
1 ATTTTTATAAA
74879122 TTCTGAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 6
0.72 0.09 0.19
Matches are distributed among these distances:
17 3 0.13
18 1 0.04
19 18 0.78
21 1 0.04
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (21 bp):
ATTTTTATAAAATGTTCTATA
Found at i:74879135 original size:19 final size:20
Alignment explanation
Indices: 74879113--74879153 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
74879103 ATGTTTTAAT
74879113 TTTTATA-AAT-TCTGAAAAA
1 TTTTATATAATCTCT-AAAAA
74879132 TTTTATATAATCTCTAAAAA
1 TTTTATATAATCTCTAAAAA
74879152 TT
1 TT
74879154 AATTAAGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 10 0.50
21 3 0.15
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (20 bp):
TTTTATATAATCTCTAAAAA
Found at i:74879151 original size:21 final size:19
Alignment explanation
Indices: 74879113--74879151 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
74879103 ATGTTTTAAT
*
74879113 TTTTATAAATTCTGAAAAA
1 TTTTATAAATTCTAAAAAA
74879132 TTTTATATAATCTCTAAAAA
1 TTTTATA-AAT-TCTAAAAA
74879152 TTAATTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 3 0.18
21 7 0.41
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.44
Consensus pattern (19 bp):
TTTTATAAATTCTAAAAAA
Found at i:74879716 original size:3 final size:3
Alignment explanation
Indices: 74879708--74879733 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
74879698 TATCATCTAT
74879708 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
74879734 TCTCGATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:74888902 original size:26 final size:26
Alignment explanation
Indices: 74888873--74888980 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
74888863 TGGTACAAAT
74888873 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
74888899 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
74888925 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
74888951 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
74888977 TGAT
1 TGAT
74888981 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:74894390 original size:25 final size:25
Alignment explanation
Indices: 74894344--74894391 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74894334 TTATAATATG
* * *
74894344 AAAATGACCATTTTGCCTCTAGGTC
1 AAAATGACCATTATACCCCTAGGTC
74894369 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
74894392 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTC
Found at i:74894442 original size:9 final size:9
Alignment explanation
Indices: 74894430--74894486 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
74894420 TTTGATAAAC
74894430 ATGATATGT
1 ATGATATGT
*
74894439 ATGATATGCAC
1 ATGATATG--T
*
74894450 ATGACATGT
1 ATGATATGT
*
74894459 ATGATATGCAC
1 ATGATATG--T
74894470 ATGATATGT
1 ATGATATGT
74894479 ATGATATG
1 ATGATATG
74894487 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:74894453 original size:20 final size:20
Alignment explanation
Indices: 74894428--74894498 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
74894418 ATTTTGATAA
74894428 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
74894448 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
74894468 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
74894488 ACATGAGATGT
1 ACATGATATGT
74894499 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:74894475 original size:11 final size:11
Alignment explanation
Indices: 74894439--74894493 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
74894429 CATGATATGT
74894439 ATGATATGCAC
1 ATGATATGCAC
* *
74894450 ATGACATG--T
1 ATGATATGCAC
74894459 ATGATATGCAC
1 ATGATATGCAC
*
74894470 ATGATATG--T
1 ATGATATGCAC
74894479 ATGATATGCAC
1 ATGATATGCAC
74894490 ATGA
1 ATGA
74894494 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:74894623 original size:24 final size:24
Alignment explanation
Indices: 74894543--74894756 Score: 276
Period size: 24 Copynumber: 9.0 Consensus size: 24
74894533 GGAGGAAGTG
*
74894543 CAAAAGGGCTTATGCCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
74894567 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
74894590 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
74894613 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
74894637 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
74894661 -TAAAGGGCTTATGCCCTAGTGAT
1 CAAAAGGGCTTATGCCCCAGTTAT
74894684 CAAAAGGGCTTATGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
74894707 CAAAAAGGGCTTTTGCCCCAGTTAT
1 C-AAAAGGGCTTATGCCCCAGTTAT
* *
74894732 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
74894757 ATGATAAAGC
Statistics
Matches: 170, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
23 65 0.38
24 94 0.55
25 11 0.06
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:74894665 original size:71 final size:71
Alignment explanation
Indices: 74894543--74894735 Score: 325
Period size: 71 Copynumber: 2.7 Consensus size: 71
74894533 GGAGGAAGTG
*
74894543 CAAAAGGGCTTATGCCTCAGTTATT-AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
*
74894607 AGTTAT
66 AGTGAT
*
74894613 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
74894678 AGTGAT
66 AGTGAT
** *
74894684 CAAAAGGGCTTATGCCCCAGTTACAAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAA
74894736 AGAGGCTAGG
Statistics
Matches: 116, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
70 24 0.21
71 92 0.79
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
AGTGAT
Found at i:74894983 original size:31 final size:31
Alignment explanation
Indices: 74894948--74895013 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
74894938 ACCATTTATA
*
74894948 GAAAAGGCTTCGGCCCAGTAATATGAAATTT
1 GAAAAGGCTTCGGCCCAGTAATATGAAATAT
**
74894979 GAAAAGGCTTCGGCCCAGTGTTATGAAATAT
1 GAAAAGGCTTCGGCCCAGTAATATGAAATAT
74895010 GAAA
1 GAAA
74895014 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.24
Consensus pattern (31 bp):
GAAAAGGCTTCGGCCCAGTAATATGAAATAT
Found at i:74902053 original size:25 final size:25
Alignment explanation
Indices: 74902024--74902072 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
74902014 TTATAATATG
* *
74902024 AAAATGACCATTTTGCCCCTAGGTC
1 AAAATGACCATTATACCCCTAGGTC
74902049 AAAATGACCATTATACCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
74902073 TTATATATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTC
Found at i:74902121 original size:9 final size:9
Alignment explanation
Indices: 74902109--74902165 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
74902099 TTTGATAAAC
74902109 ATGATATGT
1 ATGATATGT
*
74902118 ATGATATGCAC
1 ATGATATG--T
*
74902129 ATGACATGT
1 ATGATATGT
*
74902138 ATGATATGCAC
1 ATGATATG--T
74902149 ATGATATGT
1 ATGATATGT
74902158 ATGATATG
1 ATGATATG
74902166 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:74902132 original size:20 final size:20
Alignment explanation
Indices: 74902107--74902177 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
74902097 ATTTTGATAA
74902107 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
74902127 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
74902147 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
74902167 ACATGAGATGT
1 ACATGATATGT
74902178 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:74902154 original size:11 final size:11
Alignment explanation
Indices: 74902118--74902172 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
74902108 CATGATATGT
74902118 ATGATATGCAC
1 ATGATATGCAC
* *
74902129 ATGACATG--T
1 ATGATATGCAC
74902138 ATGATATGCAC
1 ATGATATGCAC
*
74902149 ATGATATG--T
1 ATGATATGCAC
74902158 ATGATATGCAC
1 ATGATATGCAC
74902169 ATGA
1 ATGA
74902173 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:74902302 original size:24 final size:24
Alignment explanation
Indices: 74902222--74902434 Score: 267
Period size: 23 Copynumber: 9.0 Consensus size: 24
74902212 GGAAGAAGTG
*
74902222 CAAAAGGGCTTATGCCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
74902246 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
74902269 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
74902292 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
74902316 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
74902340 -TAAAGGGCTTATGCCCTAGTGAT
1 CAAAAGGGCTTATGCCCCAGTTAT
74902363 CAAAAGGGCTTATG-CCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
74902385 CAAAAAGGGCTTTTGCCCCAGTTAT
1 C-AAAAGGGCTTATGCCCCAGTTAT
* *
74902410 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
74902435 ATGATAAAGC
Statistics
Matches: 168, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
22 1 0.01
23 82 0.49
24 74 0.44
25 11 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:74902314 original size:47 final size:46
Alignment explanation
Indices: 74902224--74902435 Score: 266
Period size: 47 Copynumber: 4.5 Consensus size: 46
74902214 AAGAAGTGCA
* *
74902224 AAAGGGCTTATGCCTCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
74902270 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
* * * *
74902317 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTGATCA
1 -AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT-T
* *
74902365 AAAGGGCTTATG-CCCAGTTACAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTATT
*
74902411 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
74902436 TGATAAAGCA
Statistics
Matches: 144, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
46 29 0.20
47 81 0.56
48 27 0.19
49 7 0.05
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:74902661 original size:31 final size:31
Alignment explanation
Indices: 74902626--74902691 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
74902616 ACCATTTATA
*
74902626 GAAAAGGCTTCGGCCCAGTAATATGAAATTT
1 GAAAAGGCTTCGGCCCAGTAATATGAAATAT
* **
74902657 GAAAAGGCTTCGGCCTAGTGTTATGAAATAT
1 GAAAAGGCTTCGGCCCAGTAATATGAAATAT
74902688 GAAA
1 GAAA
74902692 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (31 bp):
GAAAAGGCTTCGGCCCAGTAATATGAAATAT
Found at i:74906964 original size:26 final size:26
Alignment explanation
Indices: 74906925--74907032 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
74906915 TGGTACAAAT
74906925 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
74906951 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74906977 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74907003 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74907029 TGAT
1 TGAT
74907033 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74910518 original size:29 final size:29
Alignment explanation
Indices: 74910483--74910552 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
74910473 TGAGATTGGT
* * *
74910483 ACTAAGTGTGCGGGCTTGAAA-TGCATGGC
1 ACTAAGTGTGCGAG-TTGAAAGTACATGGA
*
74910512 ACTAAGTGTGCGAGTTTAAAGTACATGGA
1 ACTAAGTGTGCGAGTTGAAAGTACATGGA
74910541 ACTAAGTGTGCG
1 ACTAAGTGTGCG
74910553 TGGTTGATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
28 5 0.14
29 31 0.86
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (29 bp):
ACTAAGTGTGCGAGTTGAAAGTACATGGA
Found at i:74916485 original size:83 final size:83
Alignment explanation
Indices: 74916342--74916507 Score: 287
Period size: 83 Copynumber: 2.0 Consensus size: 83
74916332 CGTAAAACAT
*
74916342 GATGTTACAAATATATTTTTGATGCTTGAATTATACATAGATTGTATATATAATTTATTATAGTT
1 GATGTTACAAATATATTTTTGATGCTTGAATTATACATAGATTGTATATATAATTGATTATAGTT
74916407 GAAAACGATGATAAATCA
66 GAAAACGATGATAAATCA
* *
74916425 GATGTTACAAATATGTTTTTGATGCTTGAATTATACATAGATTGTATATATAATTGATTATGGTT
1 GATGTTACAAATATATTTTTGATGCTTGAATTATACATAGATTGTATATATAATTGATTATAGTT
* *
74916490 GAATATGATGATAAATCA
66 GAAAACGATGATAAATCA
74916508 AGTGTATTTA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 78 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (83 bp):
GATGTTACAAATATATTTTTGATGCTTGAATTATACATAGATTGTATATATAATTGATTATAGTT
GAAAACGATGATAAATCA
Found at i:74926143 original size:20 final size:20
Alignment explanation
Indices: 74926120--74926158 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74926110 CAAAACCAAA
* *
74926120 TACCAAATTTTTAAAAATTT
1 TACCAAATTCTCAAAAATTT
74926140 TACCAAATTCTCAAAAATT
1 TACCAAATTCTCAAAAATT
74926159 ACGAAAATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (20 bp):
TACCAAATTCTCAAAAATTT
Found at i:74930300 original size:120 final size:120
Alignment explanation
Indices: 74930081--74930345 Score: 383
Period size: 120 Copynumber: 2.2 Consensus size: 120
74930071 TGAATGATGT
* * *
74930081 CCGGGCTAAGTCTCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTA
74930146 TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTA-AA
66 TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
* * * * **
74930200 TCCTGGTTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCAT
1 -CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
74930263 TTATGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
63 TTATGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
*
74930321 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGC-TTTG
74930346 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
119 1 0.01
120 119 0.92
121 9 0.07
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTA
TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
Found at i:74930352 original size:40 final size:40
Alignment explanation
Indices: 74930080--74930340 Score: 339
Period size: 40 Copynumber: 6.5 Consensus size: 40
74930070 TTGAATGATG
* * * * * *
74930080 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTATGC-GAGTTACTAAA
** *
74930120 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTATGCGAGTTACTAAA
74930160 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
* * *
74930200 TCCTGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
*
74930240 TCTGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
74930280 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTA-AA
* *
74930321 -CCGGGCTATGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
74930341 GTTTGAACGA
Statistics
Matches: 199, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 188 0.94
41 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
Found at i:74935597 original size:24 final size:25
Alignment explanation
Indices: 74935551--74935649 Score: 78
Period size: 25 Copynumber: 4.0 Consensus size: 25
74935541 GCTTTATCAT
** *
74935551 ATAACTGGAGGCCTAGCCTCTTTT-A
1 ATAACTGG-GGCAAAGCCCCTTTTGA
74935576 ATAACTGGGGCAAAGCCCCTTTTGA
1 ATAACTGGGGCAAAGCCCCTTTTGA
* *
74935601 TTAACTAGGGCAAAG-CCCTTTTCG-
1 ATAACTGGGGCAAAGCCCCTTTT-GA
* * *
74935625 GTAAACTAGGGCAAAGCCCTTTTTG
1 AT-AACTGGGGCAAAGCCCCTTTTG
74935650 CACTTCCTCC
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
24 20 0.32
25 37 0.59
26 6 0.10
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (25 bp):
ATAACTGGGGCAAAGCCCCTTTTGA
Found at i:74935605 original size:25 final size:25
Alignment explanation
Indices: 74935577--74935649 Score: 94
Period size: 25 Copynumber: 2.9 Consensus size: 25
74935567 CCTCTTTTAA
*
74935577 TAACTGGGGCAAAGCCCCTTTTGAT
1 TAACTAGGGCAAAGCCCCTTTTGAT
*
74935602 TAACTAGGGCAAAG-CCCTTTTCGGT
1 TAACTAGGGCAAAGCCCCTTTT-GAT
* *
74935627 AAACTAGGGCAAAGCCCTTTTTG
1 TAACTAGGGCAAAGCCCCTTTTG
74935650 CACTTCCTCC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.17
25 29 0.69
26 6 0.14
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
TAACTAGGGCAAAGCCCCTTTTGAT
Found at i:74935720 original size:10 final size:10
Alignment explanation
Indices: 74935695--74935740 Score: 76
Period size: 10 Copynumber: 4.6 Consensus size: 10
74935685 TATAATGCGT
74935695 ATATCATGTGC
1 ATATCATGT-C
74935706 ATATCATGTC
1 ATATCATGTC
74935716 ATATCATGTC
1 ATATCATGTC
74935726 ATATCATGT-
1 ATATCATGTC
74935735 ATATCA
1 ATATCA
74935741 AAATCTCATG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.17
10 20 0.57
11 9 0.26
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (10 bp):
ATATCATGTC
Found at i:74937595 original size:20 final size:20
Alignment explanation
Indices: 74937572--74937610 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74937562 TACAACCAAA
* *
74937572 TACCAAATTTTTAAAAATTT
1 TACCAAATTCTCAAAAATTT
74937592 TACCAAATTCTCAAAAATT
1 TACCAAATTCTCAAAAATT
74937611 ACGAAAATCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (20 bp):
TACCAAATTCTCAAAAATTT
Found at i:74948686 original size:135 final size:135
Alignment explanation
Indices: 74948466--74949033 Score: 768
Period size: 135 Copynumber: 4.2 Consensus size: 135
74948456 CATAGCAAAT
* * * * * * *
74948466 CTTATCTCTCTAAAGTTGCAGTAGAGTAGGTTGAAA-TA-GCAAGTCTCATCTCCCTAAAGTTAC
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGC
* * * **
74948529 AGTGGAGCAGA-TGGAAGATAGCAGATCTTGTCCCCCTGAAGTTGCAGTAGAGCAGATCAAAGCC
66 AGTGGAGCAGACT-GAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGTA
74948593 ACAATC
130 ACAATC
* *
74948599 CTTATCTCTTTGAAGTTGTAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGC
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGC
* * * * *
74948664 AGTGGAGCGGACTAAAGTTAGCAGATCTTATCTCCCTGGAGTTGCAGTAGAGCATATCGAAGTAA
66 AGTGGAGCAGACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGTAA
74948729 CAATC
131 CAATC
* *
74948734 CTTATCTCTCTGAAGTTCCAGTAGAGTAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGC
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGC
* *
74948799 AGTAGAGCAGACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGTAGT-GAAGCAGATCAAAGTA
66 AGTGGAGCAGACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGTAG-AGCAGATCAAAGTA
74948863 ACAATC
130 ACAATC
*
74948869 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTTCCTGAAGTTGC
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGC
* * * * *
74948934 AGTGGAGCAGACTGAAGTTAGTAGATCTTATCTCCCTGAAGTTGCAATGGAGCAGAACGAAGTTA
66 AGTGGAGCAGACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAG-TA
**
74948999 GTAGAT-
130 ACA-ATC
* *
74949005 CTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAG
74949034 AACAAAGTAA
Statistics
Matches: 385, Mismatches: 43, Indels: 11
0.88 0.10 0.03
Matches are distributed among these distances:
133 30 0.08
134 3 0.01
135 318 0.83
136 32 0.08
137 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (135 bp):
CTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGC
AGTGGAGCAGACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATCAAAGTAA
CAATC
Found at i:74948793 original size:46 final size:45
Alignment explanation
Indices: 74948465--74949123 Score: 365
Period size: 45 Copynumber: 14.7 Consensus size: 45
74948455 TCATAGCAAA
* * * * * *
74948465 TCTTATCTCTCTAAAGTTGCAGTAGAGTAGGTTGAAA-TAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGATAAAATTACCAAG
* * * * * *
74948509 TCTCATCTCCCTAAAGTTACAGTGGAGCA-GATGGAAGA-TAGC-AG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGAT--AAAATTACCAAG
* * * * *
74948553 ATCTTGTCCCCCTGAAGTTGCAGTAGAGCA-GATCAAA--GCCACAA
1 -TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGATAAAATTACCA-AG
** *
74948597 TCCTTATCTCTTTGAAGTTGTAGTAGAGCAGGATAAAATTACCCAAG
1 T-CTTATCTCCCTGAAGTTGCAGTAGAGCAGGATAAAATTA-CCAAG
* * * *
74948644 TCTCATCTCCCTGAAGTTGCAGTGGAGC-GGACTAAAGTTAGC-AG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGA-TAAAATTACCAAG
* * ** * *
74948688 ATCTTATCTCCCTGGAGTTGCAGTAGAGCA-TATCGAAGTAACAA-
1 -TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGATAAAATTACCAAG
* * *
74948732 TCCTTATCTCTCTGAAGTTCCAGTAGAGTAGGATAAAATTACCCAAG
1 T-CTTATCTCCCTGAAGTTGCAGTAGAGCAGGATAAAATTA-CCAAG
* * * *
74948779 TCTCATCTCCCTGAAGTTGCAGTAGAGCA-GACTGAAGTTAGC-AG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGA-TAAAATTACCAAG
* * * *
74948823 ATCTTATCTCCCTGAAGTTGTAGT-GAAGCA-GATCAAAGTAACAA-
1 -TCTTATCTCCCTGAAGTTGCAGTAG-AGCAGGATAAAATTACCAAG
*
74948867 TCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAG
1 T-CTTATCTCCCTGAAGTTGCAGTAGAGCAGGATAAAATTA-CCAAG
* * * * * **
74948914 TCTCATCTTCCTGAAGTTGCAGTGGAGCA-GACTGAAGTTA-GTAG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGA-TAAAATTACCAAG
* * * ** * **
74948958 ATCTTATCTCCCTGAAGTTGCAATGGAGCAGAACGAAGTTA-GTAG
1 -TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGATAAAATTACCAAG
* * *
74949003 ATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GA-ACAAAGTAACAA-
1 -TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGATA-AAATTACCAAG
* *
74949047 TCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACGAA-
1 T-CTTATCTCCCTGAAGTTGCAGTAGAGCAGGATAAAATTAC-C-AAG
* * * *
74949094 CCGTATCTCTCTGAAGTTGCAGTGGAGCAG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGCAG
74949124 TTGTAGTAGA
Statistics
Matches: 481, Mismatches: 97, Indels: 72
0.74 0.15 0.11
Matches are distributed among these distances:
42 1 0.00
43 8 0.02
44 147 0.31
45 191 0.40
46 125 0.26
47 6 0.01
48 3 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAGCAGGATAAAATTACCAAG
Found at i:74948973 original size:180 final size:180
Alignment explanation
Indices: 74948783--74949123 Score: 537
Period size: 180 Copynumber: 1.9 Consensus size: 180
74948773 CCCAAGTCTC
* *
74948783 ATCTCCCTGAAGTTGCAGTAGAGCAG-ACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGTAGT
1 ATCTCCCTGAAGTTGCAATAGAGCAGAAC-GAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGT
* *
74948847 GAAGCAGATCAAAGTAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTAC-CC
65 GAAGCAGAACAAAGTAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACC
*
74948911 AA--GTCTCATCTTCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGTAGATCTT
130 AACCGTATC-TC-T-CTGAAGTTGCAGTGGAGCAGACTGAAGTTAGTAGATCTT
* *
74948963 ATCTCCCTGAAGTTGCAATGGAGCAGAACGAAGTTAGTAGATCTTATCTCCCTGAAGTTGCAGTG
1 ATCTCCCTGAAGTTGCAATAGAGCAGAACGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGTG
* *
74949028 GAGCAGAACAAAGTAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACGA
66 AAGCAGAACAAAGTAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACCA
74949093 ACCGTATCTCTCTGAAGTTGCAGTGGAGCAG
131 ACCGTATCTCTCTGAAGTTGCAGTGGAGCAG
74949124 TTGTAGTAGA
Statistics
Matches: 148, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
180 136 0.92
181 6 0.04
182 2 0.01
183 4 0.03
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (180 bp):
ATCTCCCTGAAGTTGCAATAGAGCAGAACGAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAGTG
AAGCAGAACAAAGTAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACCA
ACCGTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGTAGATCTT
Found at i:74949110 original size:270 final size:270
Alignment explanation
Indices: 74948466--74949123 Score: 735
Period size: 270 Copynumber: 2.4 Consensus size: 270
74948456 CATAGCAAAT
* * * * * * * * *
74948466 CTTATCTCTCTAAAGTTGCAGTAGAGTAGGTTGAAA-TA-GCAAGTCTCATCTCCCTAAAGTTAC
1 CTTATCTCCCTGAAGTTCCAGTAGAGCAGGATAAAAGTACACAAGTCTCATCTCCCTGAAGTTGC
* * * * * * *
74948529 AGTGGAGCAGA-TGGAAGATAGCAGATCTTGTCCCCCTGAAGTTGCAGT-AGAGCAGATCAAAGC
66 AGTAGAGCAGACT-AAAAATAGCAGACCGTATCTCCCTGAAGTTGCAGTGA-AGCAGATCAAAGC
* * *
74948592 CACAATCCTTATCTCTTTGAAGTTGTAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTG
129 AACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTG
* * * * *
74948657 AAGTTGCAGTGGAGCGGACTAAAGTTAGCAGATCTTATCTCCCTGGAGTTGCAGTAGAGCATATC
194 AAGTTGCAGTGGAGCAGACTAAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAATAGAGCAGAAC
74948722 GAAGTAACAATC
259 GAAGTAACAATC
* * * *
74948734 CTTATCTCTCTGAAGTTCCAGTAGAGTAGGATAAAATTACCCAAGTCTCATCTCCCTGAAGTTGC
1 CTTATCTCCCTGAAGTTCCAGTAGAGCAGGATAAAAGTACACAAGTCTCATCTCCCTGAAGTTGC
* ** * * * *
74948799 AGTAGAGCAGACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGTAGTGAAGCAGATCAAAGTAA
66 AGTAGAGCAGACTAAAAATAGCAGACCGTATCTCCCTGAAGTTGCAGTGAAGCAGATCAAAGCAA
*
74948864 CAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTTCCTGAA
131 CAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAA
* * *
74948929 GTTGCAGTGGAGCAGACTGAAGTTAGTAGATCTTATCTCCCTGAAGTTGCAATGGAGCAGAACGA
196 GTTGCAGTGGAGCAGACTAAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAATAGAGCAGAACGA
**
74948994 AGTTAGTAGAT-
261 AG-TAACA-ATC
* * * *
74949005 CTTATCTCCCTGAAGTTGCAGTGGAGCA-GA-ACAAAGTA-ACAA-TCCTTATCTCTCTGAAGTT
1 CTTATCTCCCTGAAGTTCCAGTAGAGCAGGATA-AAAGTACACAAGT-CTCATCTCCCTGAAGTT
* *
74949066 GCAGTAGAGCAGGA-TAAAAATA-CACGAACCGTATCTCTCTGAAGTTGCAGTGGAGCAG
64 GCAGTAGAGCA-GACTAAAAATAGCA-G-ACCGTATCTCCCTGAAGTTGCAGTGAAGCAG
74949124 TTGTAGTAGA
Statistics
Matches: 336, Mismatches: 43, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
268 35 0.10
269 38 0.11
270 232 0.69
271 29 0.09
272 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (270 bp):
CTTATCTCCCTGAAGTTCCAGTAGAGCAGGATAAAAGTACACAAGTCTCATCTCCCTGAAGTTGC
AGTAGAGCAGACTAAAAATAGCAGACCGTATCTCCCTGAAGTTGCAGTGAAGCAGATCAAAGCAA
CAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAA
GTTGCAGTGGAGCAGACTAAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAATAGAGCAGAACGA
AGTAACAATC
Found at i:74954392 original size:127 final size:126
Alignment explanation
Indices: 74954071--74954393 Score: 371
Period size: 127 Copynumber: 2.5 Consensus size: 126
74954061 GTAATAATTG
* * *
74954071 ATGTTTGGGAACTCGAGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTTCCGTTTGACCAAATA
1 ATGTTTGGAAATTCGAGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTTCCGTTGGACCAAATA
** * * *
74954136 ATCAAATATTCCTTTGAAATTTCATCCGTACTTTCTAAGTTCTAAAACAAGTCAATGTTCA
66 ATTGAATATTCCTTTGAAATTTCATCCGTACTTTATAAATTCTAAAACAAGACAATGTTCA
* * ** **
74954197 ATGTTTGGAAATGCGAGGAATCGTGCCCTATCGCACTGGGTTTCGA-TTTCCGGTTTGTTCCAAA
1 ATGTTTGGAAATTCGAGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTTCC-G-TTGGACCAAA
** * ** *
74954261 TAATTGAATATTCCTTTGGTATTTTA-CTCGTGTTTTATAAATTCTAAAGCAAGACAATGTTCA
64 TAATTGAATATTCCTTTGAAATTTCATC-CGTACTTTATAAATTCTAAAACAAGACAATGTTCA
* * * * *
74954324 ATGTTTGGAAATTCGAGGAATCATGCCATACCGTGCTGGGTTTCAATTTTTTCGTTGGACTAAAT
1 ATGTTTGGAAATTCGAGGAATCGTGCCCTACCGTGCTGGGTTTCGA-TTTTCCGTTGGACCAAAT
74954389 AATTG
65 AATTG
74954394 GGCATCCTTT
Statistics
Matches: 161, Mismatches: 31, Indels: 9
0.80 0.15 0.04
Matches are distributed among these distances:
125 5 0.03
126 42 0.26
127 109 0.68
128 1 0.01
129 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.37
Consensus pattern (126 bp):
ATGTTTGGAAATTCGAGGAATCGTGCCCTACCGTGCTGGGTTTCGATTTTCCGTTGGACCAAATA
ATTGAATATTCCTTTGAAATTTCATCCGTACTTTATAAATTCTAAAACAAGACAATGTTCA
Found at i:74954456 original size:18 final size:19
Alignment explanation
Indices: 74954435--74954477 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
74954425 TTTTGGAAGT
74954435 CAAAAA-TTTTTAGTTGGA
1 CAAAAATTTTTTAGTTGGA
*
74954453 CAAAAATTTTTTCGTTGGA
1 CAAAAATTTTTTAGTTGGA
74954472 CTAAAA
1 C-AAAA
74954478 CAGTCCATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.27
19 12 0.55
20 4 0.18
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (19 bp):
CAAAAATTTTTTAGTTGGA
Found at i:74958085 original size:40 final size:40
Alignment explanation
Indices: 74957979--74958162 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 40
74957969 TGCTGGAAAT
* * * * * **
74957979 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
74958019 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
74958059 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * * *
74958097 TGATATCCGGGTTAAGTCCTGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
74958138 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
74958163 GTTTGAACGA
Statistics
Matches: 113, Mismatches: 28, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
38 1 0.01
39 28 0.25
40 84 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:74967793 original size:28 final size:28
Alignment explanation
Indices: 74967753--74967831 Score: 88
Period size: 28 Copynumber: 2.8 Consensus size: 28
74967743 GCAATCAAAT
* *
74967753 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
74967781 ATGGCACTTAGTGTAAGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
74967809 A-GGACACTTAGTGTGCAAAATAT
1 ATGG-CACTTAGTGTACGAAATAT
74967832 CAAATGATTC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 2 0.05
28 40 0.95
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:74968044 original size:43 final size:42
Alignment explanation
Indices: 74967991--74968071 Score: 126
Period size: 43 Copynumber: 1.9 Consensus size: 42
74967981 TGAATAATAT
**
74967991 TATCGGGCTTCGGGCCTAGCAGGCTAAAATGCCAGTGAAATGA
1 TATCGGGCTTCAAGCCTAGCAGGC-AAAATGCCAGTGAAATGA
*
74968034 TATCGGGCTTCAAGCCTAGCAGGCGAAATGCCAGTGAA
1 TATCGGGCTTCAAGCCTAGCAGGCAAAATGCCAGTGAA
74968072 TGAGTTCAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 13 0.37
43 22 0.63
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (42 bp):
TATCGGGCTTCAAGCCTAGCAGGCAAAATGCCAGTGAAATGA
Found at i:74968094 original size:41 final size:43
Alignment explanation
Indices: 74968004--74968099 Score: 117
Period size: 41 Copynumber: 2.3 Consensus size: 43
74967994 CGGGCTTCGG
* * *
74968004 GCCTAGCAGGCTAAAATGCCAGTGAAATGATATCGGGCTTCAA
1 GCCTAGCAGGCTAAAATGCCAGTGAAATGATATCAGACTTAAA
*
74968047 GCCTAGCAGGC-GAAATGCCAGTG-AATGAGT-TCAGACTTAAA
1 GCCTAGCAGGCTAAAATGCCAGTGAAATGA-TATCAGACTTAAA
*
74968088 GTCTAGCAGGCT
1 GCCTAGCAGGCT
74968100 TCGTGCCGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
41 23 0.50
42 12 0.26
43 11 0.24
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (43 bp):
GCCTAGCAGGCTAAAATGCCAGTGAAATGATATCAGACTTAAA
Found at i:74974221 original size:39 final size:39
Alignment explanation
Indices: 74974111--74974305 Score: 273
Period size: 39 Copynumber: 4.9 Consensus size: 39
74974101 CTCGTTCAAA
* * *** * *
74974111 TGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAA
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
*
74974151 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
*
74974191 TGCCTTCGGGCTTAGCCCGGATATCACAACTCACACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
*
74974230 TGCCTTCGGGCTTAGCCCGGATATCACAACTTGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
*
74974269 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
74974306 TTCATACACA
Statistics
Matches: 141, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.70
40 42 0.30
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
Found at i:74982261 original size:39 final size:39
Alignment explanation
Indices: 74982112--74982305 Score: 282
Period size: 39 Copynumber: 4.9 Consensus size: 39
74982102 CTCGTTCAAA
* * *** * *
74982112 TGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAA
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
*
74982152 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
74982192 TGCCTTCGGGCTTAG-CCGGATATCACAACTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
74982230 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
*
74982269 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
74982306 TTCATACACA
Statistics
Matches: 143, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 38 0.27
39 63 0.44
40 42 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
Found at i:74985833 original size:28 final size:28
Alignment explanation
Indices: 74985793--74985871 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
74985783 GCAATCAAAT
* * *
74985793 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
74985821 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
74985849 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
74985872 CAAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:74986084 original size:43 final size:42
Alignment explanation
Indices: 74986031--74986111 Score: 126
Period size: 43 Copynumber: 1.9 Consensus size: 42
74986021 TGAATAATAT
**
74986031 TATCGGGCTTCGGGCCTAGCAGGCTAAAATGCCAGTGAAATGA
1 TATCGGGCTTCAAGCCTAGCAGGC-AAAATGCCAGTGAAATGA
*
74986074 TATCGGGCTTCAAGCCTAGCAGGCAAAATTCCAGTGAA
1 TATCGGGCTTCAAGCCTAGCAGGCAAAATGCCAGTGAA
74986112 TGAGTTCAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 13 0.37
43 22 0.63
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (42 bp):
TATCGGGCTTCAAGCCTAGCAGGCAAAATGCCAGTGAAATGA
Found at i:74986134 original size:41 final size:43
Alignment explanation
Indices: 74986044--74986139 Score: 117
Period size: 41 Copynumber: 2.3 Consensus size: 43
74986034 CGGGCTTCGG
* * *
74986044 GCCTAGCAGGCTAAAATGCCAGTGAAATGATATCGGGCTTCAA
1 GCCTAGCAGGCTAAAATGCCAGTGAAATGATATCAGACTTAAA
*
74986087 GCCTAGCAGGC-AAAATTCCAGTG-AATGAGT-TCAGACTTAAA
1 GCCTAGCAGGCTAAAATGCCAGTGAAATGA-TATCAGACTTAAA
*
74986128 GTCTAGCAGGCT
1 GCCTAGCAGGCT
74986140 TCGTGCCGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
41 23 0.50
42 12 0.26
43 11 0.24
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (43 bp):
GCCTAGCAGGCTAAAATGCCAGTGAAATGATATCAGACTTAAA
Found at i:74986192 original size:40 final size:41
Alignment explanation
Indices: 74986044--74986191 Score: 129
Period size: 40 Copynumber: 3.6 Consensus size: 41
74986034 CGGGCTTCGG
*
74986044 GCCTAGCAGGCTAAAATGCCAGTGAAATG-ATATCGGGCTTCAA
1 GCCTAGCAGGCT-AAATGCCAGTG-AATGAAT-TCGGGCTTAAA
* * * * *
74986087 GCCTAGCAGGCAAAATTCCAGTGAATGAGTTCAGACTTAAA
1 GCCTAGCAGGCTAAATGCCAGTGAATGAATTCGGGCTTAAA
* *** * *
74986128 GTCTAGCAGGCTTCGTGCCGGTG-ATGAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCAGTGAATGAATTCGGGCTTAAA
* *
74986168 ACCTAGCAGGCTAAATGCCGGTGA
1 GCCTAGCAGGCTAAATGCCAGTGA
74986192 TTTGATAAAA
Statistics
Matches: 81, Mismatches: 22, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
40 31 0.38
41 28 0.35
42 11 0.14
43 11 0.14
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (41 bp):
GCCTAGCAGGCTAAATGCCAGTGAATGAATTCGGGCTTAAA
Found at i:74990248 original size:66 final size:66
Alignment explanation
Indices: 74990166--74990292 Score: 182
Period size: 66 Copynumber: 1.9 Consensus size: 66
74990156 GGACACTCCC
* * *
74990166 GTGTTGGAGGCCGTGTTTGACCCCGTGTAACTCTTTTACTTGCACACACGGCCATGCCACATGCC
1 GTGTTGGAGGCCGTGTTTGACCCCGCGTAACTCTCTGACTTGCACACACGGCCATGCCACATGCC
74990231 T
66 T
* * * **
74990232 GTGTTGGAGGCCGTGTTTGACCCTGCGTTACTCTCTGACTTGCGCACACGGTTATGCCACA
1 GTGTTGGAGGCCGTGTTTGACCCCGCGTAACTCTCTGACTTGCACACACGGCCATGCCACA
74990293 CGCCCATGTG
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
66 53 1.00
ACGTcount: A:0.16, C:0.29, G:0.26, T:0.29
Consensus pattern (66 bp):
GTGTTGGAGGCCGTGTTTGACCCCGCGTAACTCTCTGACTTGCACACACGGCCATGCCACATGCC
T
Found at i:74999938 original size:40 final size:40
Alignment explanation
Indices: 74999874--74999949 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
74999864 ACTATGTTCG
**
74999874 GCACTAAGTGTGCGATTTGAAATAGCTTCA-GCTATAAATA
1 GCACTAAGTGTGCGAAATGAAATAGCTT-AGGCTATAAATA
*
74999914 GCACTAAGTGTGCGAAATGGAATAGCTTAGGCTATA
1 GCACTAAGTGTGCGAAATGAAATAGCTTAGGCTATA
74999950 TGAGGCACTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 1 0.03
40 31 0.97
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACTAAGTGTGCGAAATGAAATAGCTTAGGCTATAAATA
Found at i:74999958 original size:40 final size:40
Alignment explanation
Indices: 74999873--74999968 Score: 108
Period size: 40 Copynumber: 2.4 Consensus size: 40
74999863 GACTATGTTC
**
74999873 GGCACTAAGTGTGCGATTTGAAATAGCTTCAGCTATAAATA
1 GGCACTAAGTGTGCGAAATGAAATAGCTTCAGCTAT-AATA
*
74999914 -GCACTAAGTGTGCGAAATGGAATAGCTT-AGGCTAT-ATGA
1 GGCACTAAGTGTGCGAAATGAAATAGCTTCA-GCTATAAT-A
*
74999953 GGCACTAAGTATGCGA
1 GGCACTAAGTGTGCGA
74999969 TACCGAGATA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
38 2 0.04
39 2 0.04
40 44 0.92
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAAATGAAATAGCTTCAGCTATAATA
Found at i:75001775 original size:34 final size:34
Alignment explanation
Indices: 75001731--75001805 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
75001721 ACCGTAGTGT
*
75001731 AAACCACTACTAGAGAATGAGAGCAATCGATTTAA
1 AAACC-CTACTAGAGAATGAGAACAATCGATTTAA
*
75001766 AAACCCTACTAGAGAATGAGAACAATCGATTTGA
1 AAACCCTACTAGAGAATGAGAACAATCGATTTAA
75001800 AAACCC
1 AAACCC
75001806 CTAAAGGATA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 33 0.87
35 5 0.13
ACGTcount: A:0.45, C:0.20, G:0.16, T:0.19
Consensus pattern (34 bp):
AAACCCTACTAGAGAATGAGAACAATCGATTTAA
Found at i:75006430 original size:253 final size:252
Alignment explanation
Indices: 75005983--75006488 Score: 940
Period size: 253 Copynumber: 2.0 Consensus size: 252
75005973 ATTTGAATTG
* *
75005983 AATCAGATGCTTTGAACGGATTGGGAGTAGTGATTTTAATGATGTTAGCTAAAAAATTGTGAGAA
1 AATCAGATGCTTTGAACAGATTGGCAGTAGTGATTTTAATGATGTTAGCTAAAAAATTGTGAGAA
*
75006048 AGGGTTGCGAAGCTTATTTAGCTTATGTACTTTACACGAAAGTGTCTGAAAAGAAAATTGAATCA
66 AGGGTTGCGAAGCTTATTTAGCTTATGTACTTTACACGAAAGTGGCTGAAAAGAAAATTGAATCA
75006113 GTACCAGTTGTATGTGATTACCCAGATGTGTTTCCTGAAGAGTTACCAGGTTTAACACAGATCCG
131 GTACCAGTTGTATGTGATTACCCAGATGTGTTTCCTGAAGAGTTACCAGGTTTAACACAGATCCG
75006178 AGAGGTTGAATTTGGTATTGAGTTAGTGCCAGGAACAACTCCGATATTGATAGCTCC
196 AGAGGTTGAATTTGGTATTGAGTTAGTGCCAGGAACAACTCCGATATTGATAGCTCC
*
75006235 AATCAGATGCTTTGAACAGATTGGCAGTAGTGATTTTAATGATGTTAGCTCAAAAATTTGTGAGA
1 AATCAGATGCTTTGAACAGATTGGCAGTAGTGATTTTAATGATGTTAGCT-AAAAAATTGTGAGA
* *
75006300 AAGGGTTGCGAAGCTTATTTAGCTTATGTACTTTACACGAAAGTGGCTGAAAAGAAGATTGAATG
65 AAGGGTTGCGAAGCTTATTTAGCTTATGTACTTTACACGAAAGTGGCTGAAAAGAAAATTGAATC
*
75006365 AGTACCAGTTGTATGTGATTATCCAGATGTGTTTCCTGAAGAGTTACCAGGTTTAACACAGATCC
130 AGTACCAGTTGTATGTGATTACCCAGATGTGTTTCCTGAAGAGTTACCAGGTTTAACACAGATCC
75006430 GAGAGGTTGAATTTGGTATTGAGTTAGTGCCAGGAACAACTCCGATATTGATAGCTCC
195 GAGAGGTTGAATTTGGTATTGAGTTAGTGCCAGGAACAACTCCGATATTGATAGCTCC
75006488 A
1 A
75006489 TACAGAATAG
Statistics
Matches: 246, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
252 48 0.20
253 198 0.80
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.31
Consensus pattern (252 bp):
AATCAGATGCTTTGAACAGATTGGCAGTAGTGATTTTAATGATGTTAGCTAAAAAATTGTGAGAA
AGGGTTGCGAAGCTTATTTAGCTTATGTACTTTACACGAAAGTGGCTGAAAAGAAAATTGAATCA
GTACCAGTTGTATGTGATTACCCAGATGTGTTTCCTGAAGAGTTACCAGGTTTAACACAGATCCG
AGAGGTTGAATTTGGTATTGAGTTAGTGCCAGGAACAACTCCGATATTGATAGCTCC
Found at i:75010589 original size:40 final size:40
Alignment explanation
Indices: 75010545--75010732 Score: 204
Period size: 40 Copynumber: 4.7 Consensus size: 40
75010535 GCTACTCGTT
* *
75010545 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
75010585 CAAATGCCTTCGGGACTTAGCCCGATGTA-A-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGT-TATAGTAACTCGCA
* * * *
75010624 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * ** * *
75010664 CGAATGCCTTCGGGACTTAGCCCGG-AATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
75010704 CAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 CAAATGCCT-TCGGGACTTAGCCCGGTTAT
75010733 CATCCGAACA
Statistics
Matches: 123, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.02
39 35 0.28
40 83 0.67
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:75032099 original size:49 final size:48
Alignment explanation
Indices: 75032027--75032182 Score: 158
Period size: 49 Copynumber: 3.2 Consensus size: 48
75032017 GAGGTGTGCC
*
75032027 AGTGTAAGACCTATCTGGGACATGGCATCGACATAGATAAGTGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATAGAT-AGTGAGAGCT
* * * * *
75032076 AGTGTAAGAGCTGTCTGGGACATGGCA-CTATCCTCGAT-GTATGAAAG-T
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CATAGATAG--TGAGAGCT
* * *
75032124 CAGTGTAAGACCTGTCTAGGACATGGCATCGACTTAGAT-GTGAGAGCC
1 -AGTGTAAGACCTGTCTGGGACATGGCATCGACATAGATAGTGAGAGCT
75032172 AGTGTAAGACC
1 AGTGTAAGACC
75032183 ATGTTTAGAA
Statistics
Matches: 88, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
47 17 0.19
48 3 0.03
49 66 0.75
50 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACATAGATAGTGAGAGCT
Found at i:75034259 original size:12 final size:13
Alignment explanation
Indices: 75034233--75034262 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
75034223 TATTATTTTT
75034233 TGTGTTTACAGTA
1 TGTGTTTACAGTA
75034246 TGTGTTTA-AGTA
1 TGTGTTTACAGTA
75034258 TGTGT
1 TGTGT
75034263 GAAAGCTTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.20, C:0.03, G:0.27, T:0.50
Consensus pattern (13 bp):
TGTGTTTACAGTA
Found at i:75039867 original size:40 final size:39
Alignment explanation
Indices: 75039699--75039869 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
75039689 AGAAATTGAA
* *
75039699 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
75039739 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
75039779 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
75039819 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
75039859 TGATATCCGGG
1 TGATATCCGGG
75039870 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:75047900 original size:40 final size:39
Alignment explanation
Indices: 75047732--75047911 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 39
75047722 AGAAATTGAA
* *
75047732 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
75047772 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
75047812 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
75047852 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
*
75047892 TGATATCCGGG-TAAGTCCCG
1 TGATATCCGGGCTAAGACCCG
75047912 TTGGCCTTGG
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 12 0.10
40 95 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:75056846 original size:40 final size:39
Alignment explanation
Indices: 75056678--75056857 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 39
75056668 AGAAATTGAA
* *
75056678 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
75056718 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
75056758 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
75056798 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
*
75056838 TGATATCCGGG-TAAGTCCCG
1 TGATATCCGGGCTAAGACCCG
75056858 TTGGCCTTGG
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 12 0.10
40 95 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:75064853 original size:40 final size:39
Alignment explanation
Indices: 75064685--75064855 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
75064675 AGAAATTGAA
* *
75064685 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
75064725 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
75064765 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
75064805 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
75064845 TGATATCCGGG
1 TGATATCCGGG
75064856 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:75077804 original size:40 final size:40
Alignment explanation
Indices: 75077747--75077910 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
75077737 TGAATGATAC
* * *
75077747 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* *
75077787 CTGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
75077827 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
75077867 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
75077907 CCGG
1 CCGG
75077911 TGAAATCCCG
Statistics
Matches: 101, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:75085801 original size:40 final size:40
Alignment explanation
Indices: 75085746--75085909 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
75085736 TTGAATGATA
* * *
75085746 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
75085786 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
75085826 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
75085866 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
75085906 CCGG
1 CCGG
75085910 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:75092169 original size:40 final size:40
Alignment explanation
Indices: 75092114--75092328 Score: 304
Period size: 40 Copynumber: 5.4 Consensus size: 40
75092104 TATGTGCATA
*
75092114 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCTGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* * *
75092154 GCATTCGTGCAGGTTATTATAACCGGGTTAAGCCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* * *
75092194 GCATTCGTGTGGGTTATTATAACTGGGTTAAGTCCTGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
75092234 GCATTTGTGCGGGTTATTATAACCGGGTTATGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* * *
75092274 GCATTCGTGTGTGTTCTTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
75092314 GCATTTGTGCTGGTT
1 GCATTCGTGCGGGTT
75092329 GTTACATCCG
Statistics
Matches: 151, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 151 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:75097675 original size:28 final size:28
Alignment explanation
Indices: 75097636--75097731 Score: 83
Period size: 28 Copynumber: 3.4 Consensus size: 28
75097626 ATAATTTCGA
*
75097636 ACACACACAGTGCCTTACACCCGATCTC
1 ACACACATAGTGCCTTACACCCGATCTC
** *
75097664 ACACACATAGTGCTCGGTTA-A--TAATTTC
1 ACACACATAGTGC-C--TTACACCCGATCTC
*
75097692 GCACACATAGTGCCTTACACCCGATCT-
1 ACACACATAGTGCCTTACACCCGATCTC
75097719 AGCACACATAGTG
1 A-CACACATAGTG
75097732 TTCGGTTAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 14
0.69 0.12 0.19
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 42 0.81
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (28 bp):
ACACACATAGTGCCTTACACCCGATCTC
Found at i:75097708 original size:56 final size:56
Alignment explanation
Indices: 75097625--75097760 Score: 220
Period size: 56 Copynumber: 2.4 Consensus size: 56
75097615 ATATTCCCTA
*
75097625 AATAATTTCGAACACACACAGTGCCTTACACCCGATCTCA-CACACATAGTGCTCGGTT
1 AATAATTTCG--CACACATAGTGCCTTACACCCGATCT-AGCACACATAGTGCTCGGTT
*
75097683 AATAATTTCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGTTCGGTT
1 AATAATTTCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTCGGTT
75097739 AATAATTTCGCACACATAGTGC
1 AATAATTTCGCACACATAGTGC
75097761 ATATATTCAT
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
55 1 0.01
56 64 0.85
58 10 0.13
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (56 bp):
AATAATTTCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTCGGTT
Found at i:75097751 original size:28 final size:27
Alignment explanation
Indices: 75097665--75097759 Score: 86
Period size: 28 Copynumber: 3.4 Consensus size: 27
75097655 CCCGATCTCA
75097665 CACACATAGTGCTCGGTTAATAATTTCG
1 CACACATAGTG-TCGGTTAATAATTTCG
* ** * *
75097693 CACACATAGTG-C-CTTACACCCGATCTAG
1 CACACATAGTGTCGGTTA-A--TAATTTCG
75097721 CACACATAGTGTTCGGTTAATAATTTCG
1 CACACATAGTG-TCGGTTAATAATTTCG
75097749 CACACATAGTG
1 CACACATAGTG
75097760 CATATATTCA
Statistics
Matches: 51, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
25 3 0.06
26 2 0.04
28 41 0.80
30 2 0.04
31 3 0.06
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (27 bp):
CACACATAGTGTCGGTTAATAATTTCG
Found at i:75101165 original size:49 final size:49
Alignment explanation
Indices: 75101096--75101366 Score: 416
Period size: 49 Copynumber: 5.5 Consensus size: 49
75101086 GTACATAATA
*
75101096 ATATATGTGATAAGCCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
75101145 ATATATGTGATAAGCCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
75101194 ATATATGTGATAAGGCCTAGTGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
75101243 ATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
75101292 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTTTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATG--TAT
* * * *
75101343 GTATATGTGGTAAAGCCGAATGGC
1 ATATATGTGATAAGGCCTAATGGC
75101367 TAATGTGAAT
Statistics
Matches: 207, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
49 184 0.89
51 23 0.11
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:75101470 original size:37 final size:36
Alignment explanation
Indices: 75101415--75101501 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
75101405 AACTTGGAAA
75101415 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
75101453 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
75101490 TATGTCCGGGTA
1 TATGTCCGGGTA
75101502 AGCCTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:75121414 original size:30 final size:29
Alignment explanation
Indices: 75121378--75121443 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
75121368 AGTGAATGAT
*
75121378 ATTATATATATTAGATTATATTAAAAATAA
1 ATTATATATAGTAGA-TATATTAAAAATAA
* *
75121408 A-T-TATATAGTAGATATATTTATAATAA
1 ATTATATATAGTAGATATATTAAAAATAA
75121435 ATTA-ATATA
1 ATTATATATA
75121444 AATAATAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 13 0.42
28 16 0.52
29 1 0.03
30 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.44
Consensus pattern (29 bp):
ATTATATATAGTAGATATATTAAAAATAA
Found at i:75121433 original size:27 final size:28
Alignment explanation
Indices: 75121382--75121443 Score: 81
Period size: 27 Copynumber: 2.2 Consensus size: 28
75121372 AATGATATTA
*
75121382 TATATATTAGATTATATTAAAAATAAAT
1 TATATAGTAGATTATATTAAAAATAAAT
* *
75121410 TATATAGTAGA-TATATTTATAATAAAT
1 TATATAGTAGATTATATTAAAAATAAAT
75121437 TAATATA
1 T-ATATA
75121444 AATAATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 15 0.50
28 15 0.50
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.44
Consensus pattern (28 bp):
TATATAGTAGATTATATTAAAAATAAAT
Found at i:75127727 original size:29 final size:30
Alignment explanation
Indices: 75127674--75127752 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
75127664 ACTGGCATAT
75127674 AGTACCTGATACAATATAAACATCGATACAA
1 AGTACCTGATA-AATATAAACATCGATACAA
** * *
75127705 AGTACCTGAT-AATATAGTCATCGTTACAT
1 AGTACCTGATAAATATAAACATCGATACAA
*
75127734 AGTACCTAATATAATATAA
1 AGTACCTGATA-AATATAA
75127753 TCACCAGTAC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
29 24 0.60
31 16 0.40
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.29
Consensus pattern (30 bp):
AGTACCTGATAAATATAAACATCGATACAA
Found at i:75130000 original size:27 final size:27
Alignment explanation
Indices: 75129970--75130289 Score: 209
Period size: 27 Copynumber: 11.9 Consensus size: 27
75129960 CCCTTAATCA
*
75129970 ATAAAATGACAATTTTACCCTTAAT-TG
1 ATAAAATGACAATTTTGCCCTT-ATGTG
* ***
75129997 ATAAAATAATGGTTTTGCCCTTATGTG
1 ATAAAATGACAATTTTGCCCTTATGTG
** * *
75130024 GCAAAATGACAATTTTTTCCCTTAATCT-
1 ATAAAATGACAA-TTTTGCCCTT-ATGTG
* * *
75130052 ATGAAATGACAATTTGGCCCTTATGAG
1 ATAAAATGACAATTTTGCCCTTATGTG
* * * *
75130079 ATAAAATGACTATTTTGGCCTCATGAG
1 ATAAAATGACAATTTTGCCCTTATGTG
* ** * *
75130106 GTAAAATGACTGTTTTGCCCTCATGACG
1 ATAAAATGACAATTTTGCCCTTATG-TG
*
75130134 -TAAAATGATAATTTTGCCCTTATGTG
1 ATAAAATGACAATTTTGCCCTTATGTG
** * ** *
75130160 GCAAAATGACTATTTT-TTCTTATGTA
1 ATAAAATGACAATTTTGCCCTTATGTG
*
75130186 ATAAAATGACGATTTTGCCCTTAAT-TG
1 ATAAAATGACAATTTTGCCCTT-ATGTG
* * *
75130213 ATAAAATAACGATTTTGGCCTTATGTG
1 ATAAAATGACAATTTTGCCCTTATGTG
* * *
75130240 ATAAAATGACGATTTTGCCATTATGAG
1 ATAAAATGACAATTTTGCCCTTATGTG
* * * *
75130267 GTAAAATAACTATTTTACCCTTA
1 ATAAAATGACAATTTTGCCCTTA
75130290 GGTGGTAAGA
Statistics
Matches: 227, Mismatches: 57, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
26 27 0.12
27 176 0.78
28 21 0.09
29 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (27 bp):
ATAAAATGACAATTTTGCCCTTATGTG
Found at i:75130112 original size:82 final size:82
Alignment explanation
Indices: 75129960--75130115 Score: 181
Period size: 82 Copynumber: 1.9 Consensus size: 82
75129950 CGTACCTGGA
* * * * *
75129960 CCCTTAATCAATAAAATGACAATTTTACCCTTAATTGATAAAATAATGGTTTTGCCCTTATGTGG
1 CCCTTAATCAATAAAATGACAATTTGACCCTTAATAGATAAAATAATGATTTTGCCCTCATGAGG
75130025 CAAAATGACAATTTTTT
66 CAAAATGACAATTTTTT
* * * * *
75130042 CCCTTAATCTATGAAATGACAATTTGGCCCTT-ATGAGATAAAATGACT-ATTTTGGCCTCATGA
1 CCCTTAATCAATAAAATGACAATTTGACCCTTAAT-AGATAAAAT-AATGATTTTGCCCTCATGA
*
75130105 GGTAAAATGAC
64 GGCAAAATGAC
75130116 TGTTTTGCCC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
81 2 0.03
82 57 0.93
83 2 0.03
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.35
Consensus pattern (82 bp):
CCCTTAATCAATAAAATGACAATTTGACCCTTAATAGATAAAATAATGATTTTGCCCTCATGAGG
CAAAATGACAATTTTTT
Found at i:75130229 original size:107 final size:103
Alignment explanation
Indices: 75129960--75130289 Score: 252
Period size: 107 Copynumber: 3.1 Consensus size: 103
75129950 CGTACCTGGA
* * * *
75129960 CCCTTAATCAATAAAATGACAATTTTACCCTTAATTGATAAAATAATGGTTTTGCCCTTATGTGG
1 CCCTT-ATGAATAAAATGACAATTTTGCCCTTAATTGATAAAATAA-CGTTTTGCCCTTATG-CG
* * * * * *
75130025 CAAAATGACAATTTTTTCCCTTAATCTATG-AAATGACAATTTGG
63 TAAAATGACAA-TTTTGCCCTT-ATGT-GGAAAATGACTATTT-T
* * * * *
75130069 CCCTTATGAGATAAAATGACTATTTTGGCC-TCA-TGAGGTAAAATGACTGTTTTGCCCTCATGA
1 CCCTTATGA-ATAAAATGACAATTTTGCCCTTAATTGA--TAAAATAAC-GTTTTGCCCTTATG-
*
75130132 CGTAAAATGATAATTTTGCCCTTATGTGGCAAAATGACTATTTT
61 CGTAAAATGACAATTTTGCCCTTATGTGG-AAAATGACTATTTT
** * * *
75130176 TTCTTATGTAATAAAATGACGATTTTGCCCTTAATTGATAAAATAACGATTTTGGCCTTATGTGA
1 CCCTTATG-AATAAAATGACAATTTTGCCCTTAATTGATAAAATAACG-TTTTGCCCTTATGCG-
* * * *
75130241 TAAAATGACGATTTTGCCATTATGAGGTAAAATAACTATTTT
63 TAAAATGACAATTTTGCCCTTATGTGG-AAAATGACTATTTT
75130283 ACCCTTA
1 -CCCTTA
75130290 GGTGGTAAGA
Statistics
Matches: 175, Mismatches: 34, Indels: 25
0.75 0.15 0.11
Matches are distributed among these distances:
106 3 0.02
107 85 0.49
108 32 0.18
109 55 0.31
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (103 bp):
CCCTTATGAATAAAATGACAATTTTGCCCTTAATTGATAAAATAACGTTTTGCCCTTATGCGTAA
AATGACAATTTTGCCCTTATGTGGAAAATGACTATTTT
Found at i:75130282 original size:134 final size:135
Alignment explanation
Indices: 75129998--75130294 Score: 343
Period size: 134 Copynumber: 2.2 Consensus size: 135
75129988 CCTTAATTGA
** *
75129998 TAAAATAATGGTTTTGCCCTTATGTGGCAAAATGACAATTTTTTCCCTTAATCTATGAAATGACA
1 TAAAATAATAATTTTGCCCTTATGTGGCAAAATGACAATTTTTT-CCTTAATCTATAAAATGACA
* * * *
75130063 ATTTGGCCCTTATGAGATAAAATGACTATTTTGGCCTCATGAGGTAAAATGACTGTTTTGCCCTC
65 ATTTGGCCCTTATGAGATAAAATAACGATTTTGGCCTCATGAGATAAAATGACTGTTTTGCCATC
75130128 ATGACG
130 ATGACG
* * * *
75130134 TAAAATGATAATTTTGCCCTTATGTGGCAAAATGACTATTTTTT-CTT-ATGTAATAAAATGACG
1 TAAAATAATAATTTTGCCCTTATGTGGCAAAATGACAATTTTTTCCTTAATCT-ATAAAATGACA
* * * *
75130197 ATTTTGCCCTTAAT-TGATAAAATAACGATTTTGGCCTTATGTGATAAAATGAC-GATTTTGCCA
65 ATTTGGCCCTT-ATGAGATAAAATAACGATTTTGGCCTCATGAGATAAAATGACTG-TTTTGCCA
* *
75130260 TTATGAGG
128 TCATGACG
* *
75130268 TAAAATAACT-ATTTTACCCTTAGGTGG
1 TAAAATAA-TAATTTTGCCCTTATGTGG
75130295 TAAGATGATT
Statistics
Matches: 137, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
133 4 0.03
134 90 0.66
135 3 0.02
136 40 0.29
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (135 bp):
TAAAATAATAATTTTGCCCTTATGTGGCAAAATGACAATTTTTTCCTTAATCTATAAAATGACAA
TTTGGCCCTTATGAGATAAAATAACGATTTTGGCCTCATGAGATAAAATGACTGTTTTGCCATCA
TGACG
Found at i:75135364 original size:22 final size:22
Alignment explanation
Indices: 75135322--75135365 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
75135312 AATAGCTTAA
* *
75135322 TTAACACCAATTTACATCCTTT
1 TTAACACAAATTTACACCCTTT
75135344 TTAACAACAAATTTA-ACCCTTT
1 TTAAC-ACAAATTTACACCCTTT
75135366 CGATAAGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
TTAACACAAATTTACACCCTTT
Found at i:75142818 original size:26 final size:26
Alignment explanation
Indices: 75142763--75142841 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 26
75142753 TGTACAAATC
* * * * *
75142763 ATATAGCCATTCAAGCTATAAAAATC
1 ATATAACCATTCAAGTTATACAAGTT
75142789 ATATAACCATTCAAGTTATACAAGTT
1 ATATAACCATTCAAGTTATACAAGTT
* *
75142815 ATATATCTATTCAAGTTATACAAGTT
1 ATATAACCATTCAAGTTATACAAGTT
75142841 A
1 A
75142842 ATTCATTACC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.43, C:0.15, G:0.08, T:0.34
Consensus pattern (26 bp):
ATATAACCATTCAAGTTATACAAGTT
Found at i:75157048 original size:46 final size:46
Alignment explanation
Indices: 75156995--75157170 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75156985 TATTTGGGCA
75156995 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
75157041 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
75157088 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
75157134 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75157171 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:75157150 original size:93 final size:93
Alignment explanation
Indices: 75156991--75157162 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75156981 GGGATATTTG
* *
75156991 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75157056 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75157084 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75157149 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75157163 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75160144 original size:15 final size:15
Alignment explanation
Indices: 75160124--75160192 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
75160114 GTATCTTGGG
75160124 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
75160139 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
75160154 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
75160169 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
75160184 TTTCTTTAT
1 TTTCTTTAT
75160193 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:75160193 original size:30 final size:30
Alignment explanation
Indices: 75160115--75160202 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
75160105 CATAGTATCG
* * * *
75160115 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
75160145 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
75160175 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
75160203 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:75162638 original size:46 final size:46
Alignment explanation
Indices: 75162585--75162760 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75162575 TATTTGGGCA
75162585 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
75162631 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
75162678 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
75162724 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75162761 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:75162740 original size:93 final size:93
Alignment explanation
Indices: 75162581--75162752 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75162571 GGGATATTTG
* *
75162581 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75162646 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75162674 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75162739 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75162753 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75165555 original size:21 final size:21
Alignment explanation
Indices: 75165531--75165586 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
75165521 ACACAACCAA
75165531 AGGATGTTGCGACATAGCTAG
1 AGGATGTTGCGACATAGCTAG
75165552 AGGATGTTGCGACATAGCTAG
1 AGGATGTTGCGACATAGCTAG
*
75165573 AGGATGTTGAGACA
1 AGGATGTTGCGACA
75165587 CAGTCTTGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.30, C:0.12, G:0.34, T:0.23
Consensus pattern (21 bp):
AGGATGTTGCGACATAGCTAG
Found at i:75165654 original size:22 final size:22
Alignment explanation
Indices: 75165626--75165671 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
75165616 ACTGAAAATC
75165626 GTGTCGTGACATAGGTAAGAGG
1 GTGTCGTGACATAGGTAAGAGG
75165648 GTGTCGTGACATAGGTAAGAGG
1 GTGTCGTGACATAGGTAAGAGG
75165670 GT
1 GT
75165672 CAAGAAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.09, G:0.41, T:0.24
Consensus pattern (22 bp):
GTGTCGTGACATAGGTAAGAGG
Found at i:75165872 original size:50 final size:50
Alignment explanation
Indices: 75165796--75165896 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
75165786 TATGGACAGT
*
75165796 TTTTTACTTAAGTTTTATTTTCTGTTTCCTACCTAATTATTTTCTATTTG
1 TTTTTACTTAAGTTTTATTTTCTGTTTCCTACCTAATTATTTTATATTTG
*
75165846 TTTTTACTTAAGTTTTATTTTTTGTTTCCTACCTAATTATTTTATATTTG
1 TTTTTACTTAAGTTTTATTTTCTGTTTCCTACCTAATTATTTTATATTTG
75165896 T
1 T
75165897 AGTTTAAGTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.19, C:0.12, G:0.06, T:0.63
Consensus pattern (50 bp):
TTTTTACTTAAGTTTTATTTTCTGTTTCCTACCTAATTATTTTATATTTG
Found at i:75165888 original size:22 final size:22
Alignment explanation
Indices: 75165810--75165888 Score: 61
Period size: 25 Copynumber: 3.3 Consensus size: 22
75165800 TACTTAAGTT
*
75165810 TTATTTTCTGTTTCCTACCTAA
1 TTATTTTTTGTTTCCTACCTAA
* *
75165832 TTATTTTCTATTTGTTT-TTACTTAA
1 TTA--TT-T-TTTGTTTCCTACCTAA
75165857 GTTTTATTTTTTGTTTCCTACCTAA
1 ---TTATTTTTTGTTTCCTACCTAA
75165882 TTATTTT
1 TTATTTT
75165889 ATATTTGTAG
Statistics
Matches: 44, Mismatches: 5, Indels: 16
0.68 0.08 0.25
Matches are distributed among these distances:
22 10 0.23
24 9 0.20
25 14 0.32
26 8 0.18
28 3 0.07
ACGTcount: A:0.18, C:0.14, G:0.05, T:0.63
Consensus pattern (22 bp):
TTATTTTTTGTTTCCTACCTAA
Found at i:75170919 original size:45 final size:45
Alignment explanation
Indices: 75170821--75171038 Score: 266
Period size: 45 Copynumber: 4.9 Consensus size: 45
75170811 TTTTCTCAAA
* * * * *
75170821 TCACCGGCATT-TTGCCTGCTAGGCTC-GAGACCCGATTA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
*
75170864 TCACCTGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
*
75170909 TCACCGGCATTATAGCCTGCT-GGACTCAAAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGGCCCGAATAGTATC
* * * *
75170954 TCACTGGCATAATAGCCTACTAGGCTCAAAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
75170999 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
75171039 TAATACCAGC
Statistics
Matches: 155, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
43 10 0.06
44 19 0.12
45 122 0.79
46 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:75171087 original size:38 final size:38
Alignment explanation
Indices: 75171031--75171116 Score: 127
Period size: 38 Copynumber: 2.3 Consensus size: 38
75171021 GGCTCAAAGG
* * *
75171031 CCCGAATATAATACCAGCACTAGGCCTACGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTACGGGATTTAA
*
75171069 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTACGGGATTTAA
*
75171107 CCCAGATATA
1 CCCGGATATA
75171117 CATCAAATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTACGGGATTTAA
Found at i:75173093 original size:231 final size:231
Alignment explanation
Indices: 75172690--75173156 Score: 934
Period size: 231 Copynumber: 2.0 Consensus size: 231
75172680 CCAAAGTTCG
75172690 TATTAAATGCTGTTTTGATGAATGTATGTATTAAATAAGATTAATTTGGCATTATAGATCAAGAG
1 TATTAAATGCTGTTTTGATGAATGTATGTATTAAATAAGATTAATTTGGCATTATAGATCAAGAG
75172755 AAACGAGATTCAAGTCGCGATCGAGGAAAAGAAAAGATTGTGGACTAAATTGCAAAGTCTTTATA
66 AAACGAGATTCAAGTCGCGATCGAGGAAAAGAAAAGATTGTGGACTAAATTGCAAAGTCTTTATA
75172820 TTTTGGTACCAAGGTAAGTTCATGTGTAAATAATGTAGCATAAATGTTATTTTTAAGTTATTAAT
131 TTTTGGTACCAAGGTAAGTTCATGTGTAAATAATGTAGCATAAATGTTATTTTTAAGTTATTAAT
75172885 GTTAATTATATGATATGCTGATTTTTAATCGTGAAA
196 GTTAATTATATGATATGCTGATTTTTAATCGTGAAA
75172921 TATTAAATGCTGTTTTGATGAATGTATGTATTAAATAAGATTAATTTGGCATTATAGATCAAGAG
1 TATTAAATGCTGTTTTGATGAATGTATGTATTAAATAAGATTAATTTGGCATTATAGATCAAGAG
75172986 AAACGAGATTCAAGTCGCGATCGAGGAAAAGAAAAGATTGTGGACTAAATTGCAAAGTCTTTATA
66 AAACGAGATTCAAGTCGCGATCGAGGAAAAGAAAAGATTGTGGACTAAATTGCAAAGTCTTTATA
75173051 TTTTGGTACCAAGGTAAGTTCATGTGTAAATAATGTAGCATAAATGTTATTTTTAAGTTATTAAT
131 TTTTGGTACCAAGGTAAGTTCATGTGTAAATAATGTAGCATAAATGTTATTTTTAAGTTATTAAT
75173116 GTTAATTATATGATATGCTGATTTTTAATCGTGAAA
196 GTTAATTATATGATATGCTGATTTTTAATCGTGAAA
75173152 TATTA
1 TATTA
75173157 TGCTTTGTGG
Statistics
Matches: 236, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
231 236 1.00
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (231 bp):
TATTAAATGCTGTTTTGATGAATGTATGTATTAAATAAGATTAATTTGGCATTATAGATCAAGAG
AAACGAGATTCAAGTCGCGATCGAGGAAAAGAAAAGATTGTGGACTAAATTGCAAAGTCTTTATA
TTTTGGTACCAAGGTAAGTTCATGTGTAAATAATGTAGCATAAATGTTATTTTTAAGTTATTAAT
GTTAATTATATGATATGCTGATTTTTAATCGTGAAA
Found at i:75173391 original size:46 final size:46
Alignment explanation
Indices: 75173341--75173516 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
75173331 TGGTTGAGCA
75173341 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
75173387 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* *
75173432 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
*
75173480 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75173517 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 62 0.56
47 29 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:75173497 original size:93 final size:93
Alignment explanation
Indices: 75173338--75173508 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
75173328 GGATGGTTGA
* *
75173338 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
75173403 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
75173431 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
75173495 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
75173509 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:75177271 original size:23 final size:23
Alignment explanation
Indices: 75177244--75177311 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
75177234 CTTAAGGCAA
75177244 GTGGTAGTCGATTTTTCGGTTAG
1 GTGGTAGTCGATTTTTCGGTTAG
*** *
75177267 GTGGT--T-G--TTAAGGGTT-T
1 GTGGTAGTCGATTTTTCGGTTAG
75177284 GTGGTAGTCGATTTTTCGGTTAG
1 GTGGTAGTCGATTTTTCGGTTAG
75177307 GTGGT
1 GTGGT
75177312 TGTTAAGGGT
Statistics
Matches: 31, Mismatches: 8, Indels: 12
0.61 0.16 0.24
Matches are distributed among these distances:
17 5 0.16
18 6 0.19
19 1 0.03
20 2 0.06
21 1 0.03
22 6 0.19
23 10 0.32
ACGTcount: A:0.12, C:0.06, G:0.38, T:0.44
Consensus pattern (23 bp):
GTGGTAGTCGATTTTTCGGTTAG
Found at i:75177289 original size:40 final size:40
Alignment explanation
Indices: 75177244--75177323 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
75177234 CTTAAGGCAA
75177244 GTGGTAGTCGATTTTTCGGTTAGGTGGTTGTTAAGGGTTT
1 GTGGTAGTCGATTTTTCGGTTAGGTGGTTGTTAAGGGTTT
75177284 GTGGTAGTCGATTTTTCGGTTAGGTGGTTGTTAAGGGTTT
1 GTGGTAGTCGATTTTTCGGTTAGGTGGTTGTTAAGGGTTT
75177324 TTCTAACACT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.12, C:0.05, G:0.38, T:0.45
Consensus pattern (40 bp):
GTGGTAGTCGATTTTTCGGTTAGGTGGTTGTTAAGGGTTT
Found at i:75178093 original size:27 final size:27
Alignment explanation
Indices: 75178000--75178092 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
75177990 ACCCCGATTT
75178000 GTAAAATGACTGAAGTA-CCCTCATAAG
1 GTAAAATGACTGAAGTACCCCT-ATAAG
* * *
75178027 ATAAAATGACTGAAATACCCCTATAGG
1 GTAAAATGACTGAAGTACCCCTATAAG
*
75178054 GTAAAATGACTGTAGTACCCCTATAAG
1 GTAAAATGACTGAAGTACCCCTATAAG
*
75178081 GTAAACTGACTG
1 GTAAAATGACTG
75178093 TTTTGCCCTT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 53 0.93
28 4 0.07
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (27 bp):
GTAAAATGACTGAAGTACCCCTATAAG
Found at i:75178112 original size:27 final size:27
Alignment explanation
Indices: 75178053--75178184 Score: 122
Period size: 27 Copynumber: 4.9 Consensus size: 27
75178043 ACCCCTATAG
** * * **
75178053 GGTAAAATGACTGTAGTACCCCTATAA
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
75178080 GGTAAACTGACTGTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * * *
75178107 GTTAAAATGACGGCTTTGCCCTTATAT
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
75178134 GGTAAAATGA-TGGTTTTGCCCTTATGA
1 GGTAAAATGACT-GTTTTGCCCTTATGT
* *
75178161 GGTAAAATGACTATTTTTCCCTTA
1 GGTAAAATGACTGTTTTGCCCTTA
75178185 CGTAGGATGA
Statistics
Matches: 84, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGT
Found at i:75178113 original size:54 final size:54
Alignment explanation
Indices: 75178053--75178172 Score: 136
Period size: 54 Copynumber: 2.2 Consensus size: 54
75178043 ACCCCTATAG
* *
75178053 GGTAAAATGACTG-TAGTACCCCTATAAGGTAAACTGACT-GTTTTGCCCTTATGT
1 GGTAAAATGACTGCT-GTACCCCTATAAGGTAAAATGA-TGGTTTTGCCCTTATGA
* * * * * *
75178107 GTTAAAATGACGGCTTTGCCCTTATATGGTAAAATGATGGTTTTGCCCTTATGA
1 GGTAAAATGACTGCTGTACCCCTATAAGGTAAAATGATGGTTTTGCCCTTATGA
75178161 GGTAAAATGACT
1 GGTAAAATGACT
75178173 ATTTTTCCCT
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
53 1 0.02
54 52 0.96
55 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (54 bp):
GGTAAAATGACTGCTGTACCCCTATAAGGTAAAATGATGGTTTTGCCCTTATGA
Found at i:75182667 original size:27 final size:27
Alignment explanation
Indices: 75182637--75182924 Score: 221
Period size: 27 Copynumber: 10.7 Consensus size: 27
75182627 TGAATTGACT
75182637 AAATGACTGATTTGCCCTTATATGGTA
1 AAATGACTGATTTGCCCTTATATGGTA
* *
75182664 AAATGAC-AATTTTGCCCTTATAAGGTA
1 AAATGACTGA-TTTGCCCTTATATGGTA
* *
75182691 AAATGATTGTTTTGCCCTTATATGGTA
1 AAATGACTGATTTGCCCTTATATGGTA
* * * **
75182718 AAAT-AATTATTTTACCCATTATATATTA
1 AAATGACTGA-TTTGCCC-TTATATGGTA
* * * *
75182746 AAATGACTGTTTTGCCCTTTTGTGGTG
1 AAATGACTGATTTGCCCTTATATGGTA
* *
75182773 AAATGACT-ATTTTGCTCTTATGTGGTA
1 AAATGACTGA-TTTGCCCTTATATGGTA
*
75182800 AGAA-GACT-ATTTTGCCCTTATATAGTA
1 A-AATGACTGA-TTTGCCCTTATATGGTA
* *
75182827 AAATGACTG-TTTGCCCTTATGTGGTG
1 AAATGACTGATTTGCCCTTATATGGTA
* * * *
75182853 AAATGACTGTTTTGCTCTTATGTAGTA
1 AAATGACTGATTTGCCCTTATATGGTA
* * *
75182880 AGATAACT-ATTTTGCCCTCATATGGTA
1 AAATGACTGA-TTTGCCCTTATATGGTA
* *
75182907 AGATGACTGTTTTGCCCT
1 AAATGACTGATTTGCCCT
75182925 ATGTGATGTA
Statistics
Matches: 206, Mismatches: 43, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
26 28 0.14
27 156 0.76
28 20 0.10
29 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (27 bp):
AAATGACTGATTTGCCCTTATATGGTA
Found at i:75182719 original size:54 final size:54
Alignment explanation
Indices: 75182637--75182924 Score: 310
Period size: 54 Copynumber: 5.3 Consensus size: 54
75182627 TGAATTGACT
* * *
75182637 AAATGACTGATTTGCCCTTATATGGTAAAATGACAATTTTGCCCTTATAAGGTA
1 AAATGACTGTTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATATGGTA
* * * * **
75182691 AAATGATTGTTTTGCCCTTATATGGTAAAATAATTATTTTACCCATTATATATTA
1 AAATGACTGTTTTGCCCTTATATGGTAAAATGACTATTTTGCCC-TTATATGGTA
* * * * *
75182746 AAATGACTGTTTTGCCCTTTTGTGGTGAAATGACTATTTTGCTCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATATGGTA
* * * * *
75182800 AGAA-GACTATTTTGCCCTTATATAGTAAAATGACT-GTTTGCCCTTATGTGGTG
1 A-AATGACTGTTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATATGGTA
* * * * * *
75182853 AAATGACTGTTTTGCTCTTATGTAGTAAGATAACTATTTTGCCCTCATATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATATGGTA
*
75182907 AGATGACTGTTTTGCCCT
1 AAATGACTGTTTTGCCCT
75182925 ATGTGATGTA
Statistics
Matches: 191, Mismatches: 39, Indels: 8
0.80 0.16 0.03
Matches are distributed among these distances:
52 2 0.01
53 42 0.22
54 102 0.53
55 45 0.24
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (54 bp):
AAATGACTGTTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATATGGTA
Found at i:75182860 original size:80 final size:80
Alignment explanation
Indices: 75182647--75182929 Score: 345
Period size: 80 Copynumber: 3.5 Consensus size: 80
75182637 AAATGACTGA
* ** ** * * *
75182647 TTTGCCCTTATATGGTAAAATGACAATTTTGCCCTTATAAGGTAAAATGATTGTTTTGCCCTTAT
1 TTTGCCCTTATATAGTAAAATGACTGTTTTGCCCTTATGTGGTGAAATGACTGTTTTGCTCTTAT
* * *
75182712 ATGGTAAAATAATTAT
66 GTGGTAAGA-AACTAT
* * * *
75182728 TTTACCCATTATATATTAAAATGACTGTTTTGCCCTTTTGTGGTGAAATGACTATTTTGCTCTTA
1 TTTGCCC-TTATATAGTAAAATGACTGTTTTGCCCTTATGTGGTGAAATGACTGTTTTGCTCTTA
75182793 TGTGGTAAGAAGACTAT
65 TGTGGTAAGAA-ACTAT
75182810 TTTGCCCTTATATAGTAAAATGACTG-TTTGCCCTTATGTGGTGAAATGACTGTTTTGCTCTTAT
1 TTTGCCCTTATATAGTAAAATGACTGTTTTGCCCTTATGTGGTGAAATGACTGTTTTGCTCTTAT
*
75182874 GTAGTAAGATAACTAT
66 GTGGTAAGA-AACTAT
* * *
75182890 TTTGCCCTCATATGGTAAGATGACTGTTTTGCCC-TATGTG
1 TTTGCCCTTATATAGTAAAATGACTGTTTTGCCCTTATGTG
75182930 ATGTATATAT
Statistics
Matches: 175, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
80 78 0.45
81 33 0.19
82 64 0.37
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (80 bp):
TTTGCCCTTATATAGTAAAATGACTGTTTTGCCCTTATGTGGTGAAATGACTGTTTTGCTCTTAT
GTGGTAAGAAACTAT
Found at i:75183295 original size:18 final size:18
Alignment explanation
Indices: 75183269--75183304 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
75183259 GGACTTGCAT
*
75183269 ACTGCTTACTGTTACTAC
1 ACTGCTTACTATTACTAC
*
75183287 ACTGTTTACTATTACTAC
1 ACTGCTTACTATTACTAC
75183305 GATGGGCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.42
Consensus pattern (18 bp):
ACTGCTTACTATTACTAC
Found at i:75184782 original size:28 final size:28
Alignment explanation
Indices: 75184750--75184808 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
75184740 CAACCTCAAG
75184750 CTATGTAAGTGACTAGTACAAGAAGTAT
1 CTATGTAAGTGACTAGTACAAGAAGTAT
75184778 CTATGTAAGTGACTAGTACAAGAAGTAT
1 CTATGTAAGTGACTAGTACAAGAAGTAT
75184806 CTA
1 CTA
75184809 ACATGTAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (28 bp):
CTATGTAAGTGACTAGTACAAGAAGTAT
Found at i:75186876 original size:55 final size:55
Alignment explanation
Indices: 75186808--75186942 Score: 198
Period size: 55 Copynumber: 2.5 Consensus size: 55
75186798 CGTGCCCTTA
* * *
75186808 ACCCATGTGCAACACTAACTTTAAAACACGGCTATGACACACGCCCGTGTGGCCT
1 ACCCATGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCT
** * *
75186863 ACCTGTGTACAACATTGACTTTAAAACATGGCCATGACACACGCCCGTGTGGCCT
1 ACCCATGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCT
*
75186918 GCCCATGTACAACACTGACTTTAAA
1 ACCCATGTACAACACTGACTTTAAA
75186943 TTTTAAGTGC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 69 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (55 bp):
ACCCATGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCGTGTGGCCT
Done.