Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 247 of 335
Found at i:75188225 original size:30 final size:30
Alignment explanation
Indices: 75188168--75188225 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
75188158 AAATTCACAT
* *
75188168 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
*
75188198 CTTTGGCAAAATGACCATTTTATCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
75188226 TGCACGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:75193069 original size:27 final size:27
Alignment explanation
Indices: 75193021--75193073 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
75193011 GCGAGGCTAC
*
75193021 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGATA
* * *
75193048 CAGATATTGTGGCTAGGCCACCAGAT
1 CAGATATTGTGACAAAGCCACCAGAT
75193074 TGCAGCGAGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (27 bp):
CAGATATTGTGACAAAGCCACCAGATA
Found at i:75194262 original size:28 final size:28
Alignment explanation
Indices: 75194216--75194284 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
75194206 TTTAAAACCC
*
75194216 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
75194243 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
75194271 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
75194285 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:75194935 original size:27 final size:27
Alignment explanation
Indices: 75194905--75194966 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
75194895 GGGCAAAATG
75194905 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
75194932 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
75194959 GTAATTTT
1 GTAATTTT
75194967 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:75194980 original size:54 final size:54
Alignment explanation
Indices: 75194922--75195074 Score: 164
Period size: 54 Copynumber: 2.8 Consensus size: 54
75194912 TACCCCACAA
** * * *
75194922 GGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACCAT
1 GGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** *
75194976 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
** * * * *
75195030 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTTT
1 GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTT
75195075 GTAAATTGAG
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
53 2 0.02
54 85 0.98
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:75195088 original size:27 final size:27
Alignment explanation
Indices: 75194949--75195079 Score: 174
Period size: 27 Copynumber: 4.9 Consensus size: 27
75194939 TACCCTACAG
* *
75194949 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
75194976 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
75195003 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
75195030 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
75195057 GGGTATTTTGGTAATTTTGTAAA
1 GGGTATTTTGGTAATTTTATAAA
75195080 TTGAGGGTAA
Statistics
Matches: 90, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 89 0.99
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:75195088 original size:54 final size:54
Alignment explanation
Indices: 75194949--75195074 Score: 207
Period size: 54 Copynumber: 2.3 Consensus size: 54
75194939 TACCCTACAG
* *
75194949 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* *
75195003 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
*
75195057 GGGTATTTTGGTAATTTT
1 GGGTATTTTAGTAATTTT
75195075 GTAAATTGAG
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 67 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:75195088 original size:81 final size:81
Alignment explanation
Indices: 75194920--75195079 Score: 225
Period size: 81 Copynumber: 2.0 Consensus size: 81
75194910 TTTACCCCAC
** *
75194920 AAGGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTTTCAAACCATGGGTATTTT
1 AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTT
75194985 GGTAATTTTATAAACA
66 GGTAATTTTATAAACA
* * *
75195001 AAGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTGATTTTAT-AAACCAAGGGTATT
1 AAGGGTATTTCAGTAATTTTACCAAA-CAGGGGTATTTTAGTAATTTT-TCAAACCAAGGGTATT
*
75195064 TTGGTAATTTTGTAAA
64 TTGGTAATTTTATAAA
75195080 TTGAGGGTAA
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 2 0.03
81 67 0.96
82 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTCAGTAATTTTACCAAACAGGGGTATTTTAGTAATTTTTCAAACCAAGGGTATTTT
GGTAATTTTATAAACA
Found at i:75195119 original size:26 final size:26
Alignment explanation
Indices: 75195068--75195160 Score: 125
Period size: 27 Copynumber: 3.5 Consensus size: 26
75195058 GGTATTTTGG
*
75195068 TAATTTTGTAAATTGAGGGTAAAACGA
1 TAATTATGTAAATT-AGGGTAAAACGA
*
75195095 TAATTATGTAAATTAGGGTAAAACGG
1 TAATTATGTAAATTAGGGTAAAACGA
75195121 TAATTATGTAAATTAGGGGTAAAAC-A
1 TAATTATGTAAATTA-GGGTAAAACGA
*
75195147 GTAATTCTGTAAAT
1 -TAATTATGTAAAT
75195161 CGGGGTACTT
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
26 26 0.43
27 34 0.57
ACGTcount: A:0.42, C:0.04, G:0.20, T:0.33
Consensus pattern (26 bp):
TAATTATGTAAATTAGGGTAAAACGA
Found at i:75195167 original size:53 final size:53
Alignment explanation
Indices: 75195066--75195167 Score: 136
Period size: 53 Copynumber: 1.9 Consensus size: 53
75195056 AGGGTATTTT
* *
75195066 GGTAATTTTGTAAATTGAGGGTAAAACGATAATTATGTAAATTAGGGTAAAAC
1 GGTAATTATGTAAATTGAGGGTAAAACGATAATTATGTAAATCAGGGTAAAAC
* *
75195119 GGTAATTATGTAAATT-AGGGGTAAAAC-AGTAATTCTGTAAATCGGGGTA
1 GGTAATTATGTAAATTGA-GGGTAAAACGA-TAATTATGTAAATCAGGGTA
75195168 CTTTGGTAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
52 2 0.05
53 41 0.95
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.31
Consensus pattern (53 bp):
GGTAATTATGTAAATTGAGGGTAAAACGATAATTATGTAAATCAGGGTAAAAC
Found at i:75195176 original size:53 final size:53
Alignment explanation
Indices: 75195056--75195178 Score: 133
Period size: 53 Copynumber: 2.3 Consensus size: 53
75195046 TTATAAACCA
* * *
75195056 AGGGTATTTTGGTAATTTTGTAAATTGAGGGTAAAACGATAATTATGTAAATT
1 AGGGTAATTTGGTAATTATGTAAATTGAGGGTAAAACGATAATTATGTAAATC
*** *
75195109 AGGGTAAAACGGTAATTATGTAAATT-AGGGGTAAAAC-AGTAATTCTGTAAATC
1 AGGGTAATTTGGTAATTATGTAAATTGA-GGGTAAAACGA-TAATTATGTAAATC
* *
75195162 GGGGTACTTTGGTAATT
1 AGGGTAATTTGGTAATT
75195179 TTACAAGTCG
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
52 2 0.04
53 54 0.96
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.35
Consensus pattern (53 bp):
AGGGTAATTTGGTAATTATGTAAATTGAGGGTAAAACGATAATTATGTAAATC
Found at i:75195202 original size:27 final size:27
Alignment explanation
Indices: 75195164--75195232 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
75195154 TGTAAATCGG
*
75195164 GGTACTTT-GGTAATTTTACAAGTCGAA
1 GGTA-TTTCGGTAATTTTACAAATCGAA
* *
75195191 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAA
*
75195218 GGTATTTCAGTAATT
1 GGTATTTCGGTAATT
75195233 GGTAAACTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
26 3 0.08
27 33 0.92
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAA
Found at i:75198443 original size:28 final size:28
Alignment explanation
Indices: 75198397--75198465 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
75198387 TTTAAAACCC
*
75198397 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
75198424 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
75198452 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
75198466 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:75199111 original size:27 final size:27
Alignment explanation
Indices: 75199081--75199142 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
75199071 GGGCAAAATG
75199081 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
75199108 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
75199135 GTAATTTT
1 GTAATTTT
75199143 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:75199155 original size:27 final size:27
Alignment explanation
Indices: 75199125--75199248 Score: 171
Period size: 27 Copynumber: 4.6 Consensus size: 27
75199115 TACCCTACAG
* *
75199125 GGGTATTTTAGTAATTTT-TCAAACCAT
1 GGGTATTTTGGTAATTTTAT-AAACCAA
*
75199152 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
75199179 GGGTATTTTAGTAATTTTACAAACC-A
1 GGGTATTTTGGTAATTTTATAAACCAA
*
75199205 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
75199232 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
75199249 GTAAATTGAG
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.27
27 61 0.72
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:75199156 original size:54 final size:53
Alignment explanation
Indices: 75199097--75199248 Score: 162
Period size: 53 Copynumber: 2.8 Consensus size: 53
75199087 TTACCCCACA
** * *
75199097 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAACC
1 AGGGTATTTCAGTAATTTTA-CAAACAAAGGGTATTTTAGTAATTTTACAAACC
** *
75199150 ATGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACC
1 A-GGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACC
** * * * *
75199204 AGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTGGTAATTT
1 AGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTT
75199249 GTAAATTGAG
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 44 0.51
54 43 0.49
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACC
Found at i:75199234 original size:53 final size:54
Alignment explanation
Indices: 75199125--75199248 Score: 205
Period size: 53 Copynumber: 2.3 Consensus size: 54
75199115 TACCCTACAG
*
75199125 GGGTATTTTAGTAATTTTTCAAACCATGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTAGTAATTTTACAAACCATGGGTATTTTGGTAATTTTATAAACAAA
* *
75199179 GGGTATTTTAGTAATTTTACAAACCA-GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCATGGGTATTTTGGTAATTTTATAAACAAA
*
75199232 GGGTATTTTGGTAATTT
1 GGGTATTTTAGTAATTT
75199249 GTAAATTGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 41 0.62
54 25 0.38
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACCATGGGTATTTTGGTAATTTTATAAACAAA
Found at i:75199289 original size:22 final size:22
Alignment explanation
Indices: 75199261--75199303 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
75199251 AAATTGAGGG
75199261 TAAAACGATAATTATGTAAATC
1 TAAAACGATAATTATGTAAATC
*
75199283 TAAAACGGTAATTATGTAAAT
1 TAAAACGATAATTATGTAAAT
75199304 GGGGTAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.33
Consensus pattern (22 bp):
TAAAACGATAATTATGTAAATC
Found at i:75199318 original size:25 final size:24
Alignment explanation
Indices: 75199242--75199335 Score: 88
Period size: 25 Copynumber: 3.8 Consensus size: 24
75199232 GGGTATTTTG
75199242 GTAATT-TGTAAATTGAGGGTAAAAC
1 GTAATTATGTAAA-TG-GGGTAAAAC
*
75199267 GATAATTATGTAAAT---CTAAAAC
1 G-TAATTATGTAAATGGGGTAAAAC
75199289 GGTAATTATGTAAATGGGGTAAAAC
1 -GTAATTATGTAAATGGGGTAAAAC
*
75199314 AGTAATTCTGTAAATCGGGGTA
1 -GTAATTATGTAAAT-GGGGTA
75199336 CTTTGGTAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
22 19 0.33
23 1 0.02
25 20 0.34
26 12 0.21
27 6 0.10
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.31
Consensus pattern (24 bp):
GTAATTATGTAAATGGGGTAAAAC
Found at i:75213697 original size:80 final size:80
Alignment explanation
Indices: 75213559--75213766 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 80
75213549 CAATTGAATG
* * ** * * *
75213559 ACATCCGGGCTAAGTCCCGAAGACATTTATGCTAA-TAATTATATCCGGGTTAAGACCCGAAGGC
1 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-AAGTAGTTATATCCGGGCTAACACCCGAAGGC
* *
75213623 AATTGTGCTAGT-GACT
65 AATTGTGCAACTCG-CT
* *
75213639 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAACACCCGAAGGCA
1 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAACACCCGAAGGCA
* *
75213704 TTTGTGCAACTCGTT
66 ATTGTGCAACTCGCT
* * *
75213719 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
75213767 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 106 0.97
81 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.25
Consensus pattern (80 bp):
ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAACACCCGAAGGCA
ATTGTGCAACTCGCT
Found at i:75213760 original size:40 final size:40
Alignment explanation
Indices: 75213561--75213766 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
75213551 ATTGAATGAC
* * ** **
75213561 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAA-TAATTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGC-AAGTGGTTAT
* * ** *
75213601 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGGTTAT
* *
75213641 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
* * * *
75213681 ATCCGGGCTAACACCCGAAGGCATTTGTGCAACTCGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
*
75213721 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
75213761 ATCCGG
1 ATCCGG
75213767 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
Found at i:75225309 original size:29 final size:29
Alignment explanation
Indices: 75225270--75225348 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75225260 CTTAATAATC
*
75225270 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75225300 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75225329 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75225349 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75229861 original size:28 final size:28
Alignment explanation
Indices: 75229810--75229874 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
75229800 TCAATGCGTT
* *
75229810 GCACACTAAGTGCCATACTCGATATCTC
1 GCACACTAAGTACCACACTCGATATCTC
*
75229838 GCACACTAAGTACCACACTTGATATCTC
1 GCACACTAAGTACCACACTCGATATCTC
*
75229866 ACACACTAA
1 GCACACTAA
75229875 ATACTGTACA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.32, G:0.11, T:0.23
Consensus pattern (28 bp):
GCACACTAAGTACCACACTCGATATCTC
Found at i:75239945 original size:89 final size:92
Alignment explanation
Indices: 75239781--75239959 Score: 251
Period size: 89 Copynumber: 2.0 Consensus size: 92
75239771 TGGTGACTGA
* * *
75239781 GTTTTCTCTCACTTTTGTGACTTTTCTATTTTTTCACTTGACTTTTTACTCTTTTCTTAGTGCTT
1 GTTTTCTCTCACTTTTGTGACTATTCTATTTTGTCACTGGACTTTTTACTCTTTTCTTAGTGCTT
* *
75239846 TGTTTCTGTTCAATACTTTTTTCCACCC
66 TGTATCTGTTCAATAC-TCTTTCCACCC
75239874 GTTTTCTCTCACTTTTGTG-C-ATT-T-TTTTGTCACTGGACTTTTTACTCTTTTCTTAGTGCTT
1 GTTTTCTCTCACTTTTGTGACTATTCTATTTTGTCACTGGACTTTTTACTCTTTTCTTAGTGC-T
*
75239935 TTGTAT-TGTTCGATACTCTTTCCAC
65 TTGTATCTGTTCAATACTCTTTCCAC
75239960 TCATTTTTAC
Statistics
Matches: 79, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
88 8 0.10
89 42 0.53
90 7 0.09
91 2 0.03
92 1 0.01
93 19 0.24
ACGTcount: A:0.12, C:0.22, G:0.11, T:0.56
Consensus pattern (92 bp):
GTTTTCTCTCACTTTTGTGACTATTCTATTTTGTCACTGGACTTTTTACTCTTTTCTTAGTGCTT
TGTATCTGTTCAATACTCTTTCCACCC
Found at i:75243962 original size:34 final size:34
Alignment explanation
Indices: 75243919--75243987 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
75243909 AACGAGTACG
75243919 TCAAAGATGAATTCTGTGTAAATCAAATTTGAGA
1 TCAAAGATGAATTCTGTGTAAATCAAATTTGAGA
* *
75243953 TCAAAGATGAATTGTGTGTAAATCCAATTTGAGA
1 TCAAAGATGAATTCTGTGTAAATCAAATTTGAGA
75243987 T
1 T
75243988 GACTCAGGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (34 bp):
TCAAAGATGAATTCTGTGTAAATCAAATTTGAGA
Found at i:75246347 original size:46 final size:47
Alignment explanation
Indices: 75246243--75246362 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 47
75246233 TGTCTTCGAC
** * *
75246243 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * *
75246291 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
75246337 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
75246363 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 33 0.52
48 30 0.48
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:75252159 original size:46 final size:47
Alignment explanation
Indices: 75252055--75252174 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 47
75252045 TGTCTTCGAC
** * *
75252055 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * *
75252103 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
75252149 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
75252175 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 33 0.52
48 30 0.48
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:75255940 original size:18 final size:18
Alignment explanation
Indices: 75255917--75255952 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
75255907 CCGAGGATTG
75255917 ATGACTTGTTTGATCAGT
1 ATGACTTGTTTGATCAGT
75255935 ATGACTTGTTTGATCAGT
1 ATGACTTGTTTGATCAGT
75255953 TGAGAGGAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (18 bp):
ATGACTTGTTTGATCAGT
Found at i:75259140 original size:39 final size:38
Alignment explanation
Indices: 75259097--75259171 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 38
75259087 TGATGTCTAA
* *
75259097 TGGTAGAAAATGTATGTTTGGAATATGATAAACAACTGT
1 TGGTAGAAAATGCATGTTTGGAACATGAT-AACAACTGT
75259136 TGGTAGAAAATGCATGTTTGGAACATGATAACAACT
1 TGGTAGAAAATGCATGTTTGGAACATGATAACAACT
75259172 TTTGCTAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 7 0.21
39 27 0.79
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.31
Consensus pattern (38 bp):
TGGTAGAAAATGCATGTTTGGAACATGATAACAACTGT
Found at i:75259683 original size:42 final size:42
Alignment explanation
Indices: 75259624--75259774 Score: 151
Period size: 42 Copynumber: 3.6 Consensus size: 42
75259614 ATTAGGATTA
**
75259624 ATGAGACTACGTGTAAGACCATAT-TTGGAATATGGCATCAAT
1 ATGAGACTACGTGTAAGACCATATCTAAG-ATATGGCATCAAT
*
75259666 ATGAGACTACGTGTAAGACCATATCTAAGATATGGCATCGAT
1 ATGAGACTACGTGTAAGACCATATCTAAGATATGGCATCAAT
* * * * * * * *
75259708 ATGAGATTCCGTATAAAACCATAGCTAGGCTATTGGCATCGAT
1 ATGAGACTACGTGTAAGACCATATCTAAGATA-TGGCATCAAT
* * *
75259751 ACGAGATTACATGTAAGACCATAT
1 ATGAGACTACGTGTAAGACCATAT
75259775 GTAACACCCT
Statistics
Matches: 91, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
42 61 0.67
43 30 0.33
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (42 bp):
ATGAGACTACGTGTAAGACCATATCTAAGATATGGCATCAAT
Found at i:75260480 original size:18 final size:18
Alignment explanation
Indices: 75260453--75260513 Score: 95
Period size: 18 Copynumber: 3.4 Consensus size: 18
75260443 CCCATTGCAG
75260453 TAACAGTAATCAGTACAA
1 TAACAGTAATCAGTACAA
*
75260471 TAACATTAATCAGTACAA
1 TAACAGTAATCAGTACAA
* *
75260489 TAACAGTAATCAGTGCAG
1 TAACAGTAATCAGTACAA
75260507 TAACAGT
1 TAACAGT
75260514 TTAAACAGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.25
Consensus pattern (18 bp):
TAACAGTAATCAGTACAA
Found at i:75260898 original size:27 final size:27
Alignment explanation
Indices: 75260857--75261017 Score: 205
Period size: 27 Copynumber: 6.0 Consensus size: 27
75260847 ATATATCCAT
*
75260857 CACACAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* **
75260884 CACATAAGGGAAAAATTGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
75260911 CACATAAGGACAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
75260938 CATATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
75260965 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* ** * *
75260992 CTCATAAGATCAAAATAATCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
75261018 TCGATTAGGG
Statistics
Matches: 118, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:75260966 original size:81 final size:81
Alignment explanation
Indices: 75260862--75261017 Score: 242
Period size: 81 Copynumber: 1.9 Consensus size: 81
75260852 TCCATCACAC
***
75260862 AAGGGCAAAACAGTCATTTTACCACATAAGGGAAAAATTGTCATTTTACCACATAAGGA-CAAAA
1 AAGGGCAAAACAGTCATTTTACCACATAAGGGAAAAACAATCATTTTACCACATAA-GATCAAAA
*
75260926 TAGTCATTTTACCATAT
65 TAATCATTTTACCATAT
* *
75260943 AAGGGCAAAACAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCTCATAAGATCAAAAT
1 AAGGGCAAAACAGTCATTTTACCACATAAGGGAAAAACAATCATTTTACCACATAAGATCAAAAT
75261008 AATCATTTTA
66 AATCATTTTA
75261018 TCGATTAGGG
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
80 2 0.03
81 66 0.97
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (81 bp):
AAGGGCAAAACAGTCATTTTACCACATAAGGGAAAAACAATCATTTTACCACATAAGATCAAAAT
AATCATTTTACCATAT
Found at i:75264655 original size:68 final size:68
Alignment explanation
Indices: 75264511--75264646 Score: 245
Period size: 68 Copynumber: 2.0 Consensus size: 68
75264501 ATACCGATTC
*
75264511 AGCGTTAAGATGTTCACGGATAGGCCATACCAAATTTGGGTTAATTCCCACATTGATGACTTTTT
1 AGCGTTAAGATGTTCACGGATAGGCCATAACAAATTTGGGTTAATTCCCACATTGATGACTTTTT
75264576 AGG
66 AGG
* *
75264579 AGCGTTAAGGTGTTCACGGATAGGCCATAACAAATTTGGGTTAATTCCCACCTTGATGACTTTTT
1 AGCGTTAAGATGTTCACGGATAGGCCATAACAAATTTGGGTTAATTCCCACATTGATGACTTTTT
75264644 AGG
66 AGG
75264647 GTTGTTAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (68 bp):
AGCGTTAAGATGTTCACGGATAGGCCATAACAAATTTGGGTTAATTCCCACATTGATGACTTTTT
AGG
Found at i:75273490 original size:92 final size:92
Alignment explanation
Indices: 75273378--75273546 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
75273368 GCCCATAAGT
* *
75273378 GAACTCGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
75273443 GAG-TCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
75273469 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTC-GACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75273534 CGAGTTCGGATGC
65 CGAGTTCGGATGC
75273547 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 6 0.08
92 59 0.81
93 8 0.11
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (92 bp):
GAACTCGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75273562 original size:46 final size:46
Alignment explanation
Indices: 75273370--75273548 Score: 215
Period size: 46 Copynumber: 3.9 Consensus size: 46
75273360 TGTAACCCGC
* * *
75273370 CCATAAGTGAACTC-GACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
75273415 CCATAAGTGAACTCGGACTCAACTCAACGAG-TCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
75273464 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
75273507 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
75273549 AACCATCCTA
Statistics
Matches: 114, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 21 0.18
46 77 0.68
47 8 0.07
48 1 0.01
49 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:75275967 original size:30 final size:30
Alignment explanation
Indices: 75275923--75276011 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
75275913 CAAAGATAAC
75275923 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
75275952 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
75275982 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
75276012 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:75275971 original size:15 final size:15
Alignment explanation
Indices: 75275923--75276002 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
75275913 CAAAGATAAC
*
75275923 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
75275937 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
75275952 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
75275967 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
75275982 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
75275997 AAGAAA
1 AAGAAA
75276003 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:75276011 original size:15 final size:15
Alignment explanation
Indices: 75275934--75276011 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
75275924 AGAAAACCGA
75275934 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
75275949 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
75275963 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
75275978 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
75275994 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
75276009 ATA
1 ATA
75276012 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:75279075 original size:93 final size:93
Alignment explanation
Indices: 75278963--75279133 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75278953 GCCCATAAGT
* *
75278963 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75279028 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
75279056 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75279121 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75279134 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75279149 original size:46 final size:46
Alignment explanation
Indices: 75278955--75279135 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
75278945 TGTAACCCGC
* * *
75278955 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
75279001 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
75279051 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
75279094 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
75279136 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:75288175 original size:40 final size:39
Alignment explanation
Indices: 75288010--75288193 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
75288000 AAATTGAATG
* * *
75288010 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
75288050 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
75288090 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
75288130 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
75288169 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
75288194 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:75288218 original size:80 final size:81
Alignment explanation
Indices: 75288050--75288238 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
75288040 GCTGGAAATT
* * * *
75288050 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
75288115 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
75288131 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
75288194 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
75288210 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
75288239 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:75294373 original size:49 final size:48
Alignment explanation
Indices: 75294319--75294584 Score: 385
Period size: 49 Copynumber: 5.5 Consensus size: 48
75294309 TATTAAAATT
75294319 TGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATA-GTGATAAGGCCTAATGGCCGATGTGATGAA
75294368 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATA-GTGATAAGGCCTAATGGCCGATGTGATGAA
75294417 TGTGAAAGTGTATATAT-GTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATAGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
75294464 TGTGAAGGTGTATATATATGTGATAATGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTGTATATATA-GTGATAAGGCCTAATGGCCGATGTGATGAA
* * * * *
75294513 TGTGAAAGTGTATATAT-GTGATAAGGCCGAGTGGCCAACGTGATGGA
1 TGTGAAAGTGTATATATAGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
75294560 TGTGGAAGAGTATAAAT-GTGATAAG
1 TGTGAAAGTGTATATATAGTGATAAG
75294585 TCCCGAAGGG
Statistics
Matches: 202, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
47 93 0.46
49 109 0.54
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (48 bp):
TGTGAAAGTGTATATATAGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:75294444 original size:96 final size:96
Alignment explanation
Indices: 75294319--75294584 Score: 410
Period size: 96 Copynumber: 2.8 Consensus size: 96
75294309 TATTAAAATT
75294319 TGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
75294384 TATGTGATAAGGCCTAATGGCCGATGTGATGAA
64 TATGTGATAAGGCCTAATGGCCAATGTGATGAA
*
75294417 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
*
75294482 TGTGATAATGCCTAATGGCCAATGTGATGAA
66 TGTGATAAGGCCTAATGGCCAATGTGATGAA
* * * * * * *
75294513 TGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGGATGTGGAAGAGTATA-A-A
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
75294576 TGTGATAAG
66 TGTGATAAG
75294585 TCCCGAAGGG
Statistics
Matches: 156, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
94 9 0.06
95 1 0.01
96 129 0.83
98 17 0.11
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
TGTGATAAGGCCTAATGGCCAATGTGATGAA
Found at i:75294449 original size:47 final size:47
Alignment explanation
Indices: 75294319--75294584 Score: 379
Period size: 47 Copynumber: 5.5 Consensus size: 47
75294309 TATTAAAATT
75294319 TGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGAA
75294368 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
75294417 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
75294464 TGTGAAGGTGTATATATATGTGATAATGCCTAATGGCCAATGTGATGAA
1 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * * * *
75294513 TGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGGA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* * *
75294560 TGTGGAAGAGTATAAATGTGATAAG
1 TGTGAAAGTGTATATATGTGATAAG
75294585 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 12, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
47 100 0.50
49 94 0.47
51 7 0.03
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:75296765 original size:40 final size:40
Alignment explanation
Indices: 75296709--75297100 Score: 685
Period size: 40 Copynumber: 9.8 Consensus size: 40
75296699 GAGAATTGAG
* *
75296709 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
75296749 AGTGATGTATCTGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
75296789 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATGCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
75296829 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
75296869 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
75296909 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
75296949 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
75296989 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
75297029 AGTGATGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
75297069 AGTGATATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
75297101 ATCATGCTGG
Statistics
Matches: 338, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 338 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:75300171 original size:27 final size:26
Alignment explanation
Indices: 75300127--75300178 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
75300117 CTCGCTGCAA
*
75300127 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
75300154 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
75300179 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:75306015 original size:41 final size:42
Alignment explanation
Indices: 75305868--75306027 Score: 162
Period size: 41 Copynumber: 3.8 Consensus size: 42
75305858 GATGCCAATG
* * **
75305868 CCATATCCTAGATATGGTCTTACATGGGATCACATATCGATGT
1 CCATATCCCAGATATGGTCTTACACGAAATCACATATCGAT-T
* * ** **
75305911 CGATAACCCA-ACTATGGTCTTACACGATGTTGCATATCGATT
1 CCATATCCCAGA-TATGGTCTTACACGAAATCACATATCGATT
* * *
75305953 GCATGTCCCAGACATGGTCTTACACGAAATCACATAT-GATT
1 CCATATCCCAGATATGGTCTTACACGAAATCACATATCGATT
*
75305994 CCATATCCCAGATATAGTCTTACACGAAATCACA
1 CCATATCCCAGATATGGTCTTACACGAAATCACA
75306028 CATAACCCTA
Statistics
Matches: 93, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
41 34 0.37
42 28 0.30
43 31 0.33
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACACGAAATCACATATCGATT
Found at i:75310132 original size:21 final size:21
Alignment explanation
Indices: 75310096--75310139 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
75310086 ATTATCTCTA
75310096 ATTTAACAATTAAACATA-TG
1 ATTTAACAATTAAACATACTG
*
75310116 ATTTAACCATATAAACATACTG
1 ATTTAACAAT-TAAACATACTG
75310138 AT
1 AT
75310140 CACACTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.48, C:0.14, G:0.05, T:0.34
Consensus pattern (21 bp):
ATTTAACAATTAAACATACTG
Found at i:75311679 original size:20 final size:19
Alignment explanation
Indices: 75311650--75311694 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
75311640 TAGGCCTTAA
75311650 CCCATATCAACACAGTTGGG
1 CCCATATCAACACA-TTGGG
* * *
75311670 CCCATTTCAATACATTTGG
1 CCCATATCAACACATTGGG
75311689 CCCATA
1 CCCATA
75311695 ACAAAACAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (19 bp):
CCCATATCAACACATTGGG
Found at i:75313849 original size:19 final size:19
Alignment explanation
Indices: 75313813--75313851 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
75313803 TTTTCATCAT
* *
75313813 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
75313832 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
75313851 A
1 A
75313852 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:75314348 original size:29 final size:29
Alignment explanation
Indices: 75314315--75314377 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
75314305 GTGACAGAGT
* *
75314315 CACCAGATACAGATATTTTGTGGCAGT-GC
1 CACCAGAAACAGATAATTTGTGGCA-TAGC
75314344 CACCA-AAACAGATAATTTGTGGCATAGC
1 CACCAGAAACAGATAATTTGTGGCATAGC
75314372 CACCAG
1 CACCAG
75314378 GACGCTTCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 1 0.03
28 24 0.80
29 5 0.17
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (29 bp):
CACCAGAAACAGATAATTTGTGGCATAGC
Found at i:75314530 original size:28 final size:28
Alignment explanation
Indices: 75314483--75314547 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
75314473 AAATTAACCC
*
75314483 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
75314511 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
75314539 TAGGGGTAT
1 TAGGGGTAT
75314548 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:75322476 original size:37 final size:37
Alignment explanation
Indices: 75322423--75322523 Score: 184
Period size: 37 Copynumber: 2.7 Consensus size: 37
75322413 CGAATAGTCC
*
75322423 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
75322460 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
75322497 CCACACGTAGTCATCGGGTCTTACCCG
1 CCACACGTAGTCATCGGGTCTTACCCG
75322524 AAATATATTT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:75322752 original size:48 final size:48
Alignment explanation
Indices: 75322695--75323294 Score: 1047
Period size: 48 Copynumber: 12.5 Consensus size: 48
75322685 CTAGCCGAAT
*
75322695 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCG
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
75322743 CATTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
75322791 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
75322839 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
75322887 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAATTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
75322935 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * *
75322983 CAGTAGCCATTCGGCTTTACCTCCTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
75323031 CATTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
75323079 CATTAGCCATTCGGCTTTACCACCTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
75323127 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
75323175 CACTAGCCATTCGGCTTTACCACATATACATATCTCATAGATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
75323223 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
75323271 CACTAGCCATTCGGCTTTACCACA
1 CACTAGCCATTCGGCTTTACCACA
75323295 CACATATATA
Statistics
Matches: 532, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 532 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:75326970 original size:40 final size:40
Alignment explanation
Indices: 75326902--75327092 Score: 305
Period size: 40 Copynumber: 4.8 Consensus size: 40
75326892 CCTCATAATT
* * *
75326902 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGACATAACA
75326941 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
* *
75326981 CCAGCACGAATGCCCTTCGGAACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
75327021 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
*
75327061 CCAGCACGAATGTTCTTCGGGACTTAGCCCGG
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
75327093 CTATATAACT
Statistics
Matches: 142, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 15 0.11
40 127 0.89
ACGTcount: A:0.26, C:0.32, G:0.23, T:0.19
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
Found at i:75328431 original size:37 final size:37
Alignment explanation
Indices: 75328378--75328480 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
75328368 CGAATAGTCC
*
75328378 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
75328415 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
75328452 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
75328481 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:75328707 original size:48 final size:48
Alignment explanation
Indices: 75328653--75328889 Score: 440
Period size: 48 Copynumber: 4.9 Consensus size: 48
75328643 GCCGAATCAC
*
75328653 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
75328701 TAGCCATTCGGCTTTA-CTGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCT-CATATACATATCTCATACATATTTCACAT
75328749 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
75328797 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
*
75328845 TAGCCATTTGGCTTTACCTCATATACATATCTCATACATATTTCA
1 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCA
75328890 ATATACATAT
Statistics
Matches: 185, Mismatches: 2, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
47 1 0.01
48 182 0.98
49 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.38
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
Found at i:75328820 original size:96 final size:96
Alignment explanation
Indices: 75328653--75329174 Score: 537
Period size: 96 Copynumber: 5.2 Consensus size: 96
75328643 GCCGAATCAC
*
75328653 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
75328718 TGCATATACATATCTCATACATATTTCACAT
66 TGCATATACATATCTCATACATATTTCACAT
75328749 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA-
75328814 CT-CATATACATATCTCATACATATTTCACAT
65 CTGCATATACATATCTCATACATATTTCACAT
* * * * ***
75328845 TAGCCATTTGGCTTTACCTCATATACATATCTCATACATATTTCAATATACATATCTCATACATA
1 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTC-ACAT---TAGC-CATTCGGC
* * * *
75328910 TTTCACATTGCCAT-T-CGGTTTTACCGCATATACATATCTCACACATCTTT
61 TTT-AC--TG-CATATAC----ATATCTC--ATACATATTTCAC--A----T
* * * *
75328960 CACACTAGCCATTCGGCTTTACCACGTATACATATCTCACACATATTTCACACTAGCCATTCGGC
1 -----TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACATTAGCCATTCGGC
** * * *
75329025 TTTACCACGTATACATATCTCATACATAGTTCACAC
61 TTTACTGCATATACATATCTCATACATATTTCACAT
* * *
75329061 TAGCCATTCGGCTTTACCACGTATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
**
75329126 CACATATACATATCTCATACATATTTCACAT
66 TGCATATACATATCTCATACATATTTCACAT
*
75329157 TAGCCATTCCGCTTTACC
1 TAGCCATTCGGCTTTACC
75329175 ACACACATAT
Statistics
Matches: 357, Mismatches: 39, Indels: 60
0.78 0.09 0.13
Matches are distributed among these distances:
96 242 0.68
97 5 0.01
100 3 0.01
101 8 0.02
102 1 0.00
103 2 0.01
104 1 0.00
105 4 0.01
107 15 0.04
109 16 0.04
111 3 0.01
112 1 0.00
113 1 0.00
114 2 0.01
115 8 0.02
116 3 0.01
119 2 0.01
120 40 0.11
ACGTcount: A:0.29, C:0.28, G:0.07, T:0.36
Consensus pattern (96 bp):
TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
TGCATATACATATCTCATACATATTTCACAT
Found at i:75328883 original size:11 final size:11
Alignment explanation
Indices: 75328867--75328910 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
75328857 TTTACCTCAT
75328867 ATACATATCTC
1 ATACATATCTC
*
75328878 ATACATATTTC
1 ATACATATCTC
75328889 AATATACATATCTC
1 ---ATACATATCTC
75328903 ATACATAT
1 ATACATAT
75328911 TTCACATTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 18 0.64
14 10 0.36
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (11 bp):
ATACATATCTC
Found at i:75328893 original size:25 final size:25
Alignment explanation
Indices: 75328865--75328914 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
75328855 GCTTTACCTC
75328865 ATATACATATCTCATACATATTTCA
1 ATATACATATCTCATACATATTTCA
75328890 ATATACATATCTCATACATATTTCA
1 ATATACATATCTCATACATATTTCA
75328915 CATTGCCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (25 bp):
ATATACATATCTCATACATATTTCA
Found at i:75328961 original size:72 final size:73
Alignment explanation
Indices: 75328817--75328961 Score: 238
Period size: 72 Copynumber: 2.0 Consensus size: 73
75328807 GCTTTACCTC
* * *
75328817 ATATACATATCTCATACATATTTCACATTAGCCATTTGGCTTTACCTCATATACATATCTCATAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCACAC
75328882 ATATTTCA
66 ATATTTCA
*
75328890 ATATACATATCTCATACATATTTCACATT-GCCATTCGGTTTTACCGCATATACATATCTCACAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCACAC
*
75328954 ATCTTTCA
66 ATATTTCA
75328962 CACTAGCCAT
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
72 38 0.57
73 29 0.43
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.39
Consensus pattern (73 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCACAC
ATATTTCA
Found at i:75328990 original size:48 final size:48
Alignment explanation
Indices: 75328891--75329176 Score: 448
Period size: 48 Copynumber: 6.0 Consensus size: 48
75328881 CATATTTCAA
* * * *
75328891 TATACATATCTCATACATATTTCACA-TTGCCATTCGGTTTTACCGCA
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACG
* *
75328938 TATACATATCTCACACATCTTTCACACTAGCCATTCGGCTTTACCACG
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACG
*
75328986 TATACATATCTCACACATATTTCACACTAGCCATTCGGCTTTACCACG
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACG
*
75329034 TATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTACCACG
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACG
* * *
75329082 TATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACG
* *
75329130 TATACATATCTCATACATATTTCACATTAGCCATTCCGCTTTACCAC
1 TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
75329177 ACACATATAT
Statistics
Matches: 223, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
47 24 0.11
48 199 0.89
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (48 bp):
TATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACG
Found at i:75328990 original size:120 final size:121
Alignment explanation
Indices: 75328769--75329009 Score: 394
Period size: 120 Copynumber: 2.0 Consensus size: 121
75328759 GCTTTACCTC
* *
75328769 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCTCATATACATATCTCATAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCACAC
* * * *
75328834 ATATTTCACATTAGCCATTTGGCTTTACCTCATATACATATCTCATACATATTTCA
66 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCACACATATTTCA
*
75328890 ATATACATATCTCATACATATTTCACATT-GCCATTCGGTTTTACCGCATATACATATCTCACAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCACAC
* *
75328954 ATCTTTCACACTAGCCATTCGGCTTTACCACGTATACATATCTCACACATATTTCA
66 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCACACATATTTCA
75329010 CACTAGCCAT
Statistics
Matches: 111, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
120 82 0.74
121 29 0.26
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.37
Consensus pattern (121 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCACAC
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCACACATATTTCA
Found at i:75329006 original size:168 final size:169
Alignment explanation
Indices: 75328721--75329057 Score: 550
Period size: 168 Copynumber: 2.0 Consensus size: 169
75328711 GCTTTACTGC
* *
75328721 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCTCATATACATATCTCATAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCACAC
* * * *
75328786 ATATTTCACATTAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACATTAGCCA
66 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCACACATATTTCACACTAGCCA
* * *
75328851 TTTGGCTTTACCTCATATACATATCTCATACATATTTCA
131 TTCGGCTTTACCACATATACATATCTCATACATAGTTCA
*
75328890 ATATACATATCTCATACATATTTCACATT-GCCATTCGGTTTTACCGCATATACATATCTCACAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCACAC
* *
75328954 ATCTTTCACACTAGCCATTCGGCTTTACCACGTATACATATCTCACACATATTTCACACTAGCCA
66 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCACACATATTTCACACTAGCCA
*
75329019 TTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
131 TTCGGCTTTACCACATATACATATCTCATACATAGTTCA
75329058 CACTAGCCAT
Statistics
Matches: 155, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
168 126 0.81
169 29 0.19
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (169 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCACAC
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCACACATATTTCACACTAGCCA
TTCGGCTTTACCACATATACATATCTCATACATAGTTCA
Found at i:75329048 original size:216 final size:217
Alignment explanation
Indices: 75328673--75329105 Score: 706
Period size: 216 Copynumber: 2.0 Consensus size: 217
75328663 GCTTTACCAC
* *
75328673 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACTGCATATACATATCTCATAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCACAC
* * * *
75328738 ATATTTCACATTAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACATTAGCCA
66 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCACACATATTTCACACTAGCCA
* * * * *
75328803 TTCGGCTTTACCTCATATACATATCTCATACATATTTCACATTAGCCATTTGGCTTTACCTCATA
131 TTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTACCACATA
75328868 TACATATCTCATACATATTTCA
196 TACATATCTCATACATATTTCA
*
75328890 ATATACATATCTCATACATATTTCACATT-GCCATTCGGTTTTACCGCATATACATATCTCACAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCACAC
* *
75328954 ATCTTTCACACTAGCCATTCGGCTTTACCACGTATACATATCTCACACATATTTCACACTAGCCA
66 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCACACATATTTCACACTAGCCA
* *
75329019 TTCGGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTACCACGTA
131 TTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTACCACATA
*
75329084 TACATATCTCATATATATTTCA
196 TACATATCTCATACATATTTCA
75329106 CATTAGCCAT
Statistics
Matches: 199, Mismatches: 17, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
216 170 0.85
217 29 0.15
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (217 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATCTCACAC
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCACACATATTTCACACTAGCCA
TTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTACCACATA
TACATATCTCATACATATTTCA
Found at i:75329125 original size:264 final size:264
Alignment explanation
Indices: 75328655--75329153 Score: 827
Period size: 264 Copynumber: 1.9 Consensus size: 264
75328645 CGAATCACTA
* * **
75328655 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACTG
1 GCCATTCGGCTTTACCACATATACATATCTCACACATATTTCACACTAGCCATTCGGCTTTACCA
* * *
75328720 CATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCTCATATACATATCTCATA
66 CATATACATATCTCACACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
* * *
75328785 CATATTTCACATTAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACATTAGCC
131 CATAGTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
* *
75328850 ATTTGGCTTTACCTCATATACATATCTCATACATATTTCAATATACATATCTCATACATATTTCA
196 ATTCGGCTTTACCACATATACATATCTCATACATATTTCAATATACATATCTCATACATATTTCA
75328915 CATT
261 CATT
* * *
75328919 GCCATTCGGTTTTACCGCATATACATATCTCACACATCTTTCACACTAGCCATTCGGCTTTACCA
1 GCCATTCGGCTTTACCACATATACATATCTCACACATATTTCACACTAGCCATTCGGCTTTACCA
* *
75328984 CGTATACATATCTCACACATATTTCACACTAGCCATTCGGCTTTACCACGTATACATATCTCATA
66 CATATACATATCTCACACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
* *
75329049 CATAGTTCACACTAGCCATTCGGCTTTACCACGTATACATATCTCATATATATTTCACATTAGCC
131 CATAGTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
75329114 ATTCGGCTTTACCACATATACATATCTCATACATATTTCA
196 ATTCGGCTTTACCACATATACATATCTCATACATATTTCA
75329154 CATTAGCCAT
Statistics
Matches: 216, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
264 216 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (264 bp):
GCCATTCGGCTTTACCACATATACATATCTCACACATATTTCACACTAGCCATTCGGCTTTACCA
CATATACATATCTCACACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
CATAGTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
ATTCGGCTTTACCACATATACATATCTCATACATATTTCAATATACATATCTCATACATATTTCA
CATT
Found at i:75332040 original size:19 final size:19
Alignment explanation
Indices: 75332004--75332042 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
75331994 TTTTCATTAT
* *
75332004 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
75332023 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
75332042 A
1 A
75332043 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:75332565 original size:28 final size:29
Alignment explanation
Indices: 75332481--75332558 Score: 90
Period size: 28 Copynumber: 2.8 Consensus size: 29
75332471 AGCATGGCTG
* * * *
75332481 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCAGTGCCA
*
75332508 CCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGATACAGATAATTTGTGGCAGTGCCA
75332537 CCAGA-ACAGATAATTTGTGGCA
1 CCAGATACAGATAATTTGTGGCA
75332559 TAGCCACTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
27 11 0.26
28 17 0.40
29 15 0.35
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCAGTGCCA
Found at i:75332721 original size:28 final size:28
Alignment explanation
Indices: 75332674--75332738 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
75332664 AAATTAACCC
*
75332674 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
75332702 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
75332730 TAGGGGTAT
1 TAGGGGTAT
75332739 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:75336169 original size:16 final size:16
Alignment explanation
Indices: 75336148--75336183 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
75336138 ACACAAATTC
75336148 AAATATCTCATAAATG
1 AAATATCTCATAAATG
75336164 AAATATCTCATAAATG
1 AAATATCTCATAAATG
75336180 AAAT
1 AAAT
75336184 TCTTTTGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.31
Consensus pattern (16 bp):
AAATATCTCATAAATG
Found at i:75338145 original size:49 final size:50
Alignment explanation
Indices: 75338071--75338266 Score: 207
Period size: 50 Copynumber: 3.9 Consensus size: 50
75338061 TAGCCAAAGC
*
75338071 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCACAA
* * *
75338119 TAGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCAC
1 TA-TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCACAA
* ** * * * * *
75338170 CATCTAATACACGTAGTAGCCTGCACTTAATACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCACA-A
* * ** *
75338221 TTTCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
75338267 TCACAATAGA
Statistics
Matches: 121, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
48 2 0.02
49 40 0.33
50 42 0.35
51 37 0.31
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (50 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCACAA
Found at i:75338157 original size:26 final size:26
Alignment explanation
Indices: 75338127--75338207 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
75338117 AATAGTCTGG
*
75338127 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACGTAGTAGCCTGCACTTAATAC
* * * *
75338153 TACACAT-GT-GACCT-CAC-CATCTAA
1 TACACGTAGTAG-CCTGCACTTA-ATAC
75338177 TACACGTAGTAGCCTGCACTTAATAC
1 TACACGTAGTAGCCTGCACTTAATAC
75338203 TACAC
1 TACAC
75338208 ACGTGATCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
23 1 0.02
24 12 0.29
25 10 0.24
26 17 0.41
27 1 0.02
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.26
Consensus pattern (26 bp):
TACACGTAGTAGCCTGCACTTAATAC
Found at i:75338258 original size:101 final size:99
Alignment explanation
Indices: 75338084--75338270 Score: 266
Period size: 101 Copynumber: 1.9 Consensus size: 99
75338074 CTGGTACGCA
* * * *
75338084 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAATACTACACACGTGACCAATAGTCGGGTACACATAGTAGCCTGCACTTA
*
75338149 GTACTACACATGTGACCTCACCATCTAATACACG
66 GTACTACACATGCGACCTCACCATCTAATACACG
* ** **
75338183 TAGTAGCCTGCACTTAATACTACACACGTGATCACAGTTTTCGGGTATGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAATACTACACACGTGA-C-CAATAGTCGGGTACACATAGTAGCCTGCACT
75338248 TAGTACTACACATGCGACCTCAC
64 TAGTACTACACATGCGACCTCAC
75338271 AATAGATCAT
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
99 29 0.38
100 1 0.01
101 46 0.61
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAATACTACACACGTGACCAATAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACATGCGACCTCACCATCTAATACACG
Found at i:75341201 original size:37 final size:37
Alignment explanation
Indices: 75341092--75341207 Score: 214
Period size: 37 Copynumber: 3.1 Consensus size: 37
75341082 AGAAGTCTTA
**
75341092 CCCGGTCATAATCTCCACACGTAGTCATCGGGTCTTA
1 CCCGGTCATAATCTCCACACGTAGTCATCGGGTCTCG
75341129 CCCGGTCATAATCTCCACACGTAGTCATCGGGTCTCG
1 CCCGGTCATAATCTCCACACGTAGTCATCGGGTCTCG
75341166 CCCGGTCATAATCTCCACACGTAGTCATCGGGTCTCG
1 CCCGGTCATAATCTCCACACGTAGTCATCGGGTCTCG
75341203 CCCGG
1 CCCGG
75341208 AACATATTCC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 77 1.00
ACGTcount: A:0.19, C:0.35, G:0.22, T:0.24
Consensus pattern (37 bp):
CCCGGTCATAATCTCCACACGTAGTCATCGGGTCTCG
Found at i:75341362 original size:49 final size:49
Alignment explanation
Indices: 75341303--75341408 Score: 212
Period size: 49 Copynumber: 2.2 Consensus size: 49
75341293 CATATATTTT
75341303 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACC
75341352 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACC
1 ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACC
75341401 ACATCGGC
1 ACATCGGC
75341409 ACATATACAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 57 1.00
ACGTcount: A:0.28, C:0.35, G:0.11, T:0.25
Consensus pattern (49 bp):
ACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACC
Found at i:75341419 original size:35 final size:35
Alignment explanation
Indices: 75341373--75341443 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
75341363 TAGGCCTCAT
75341373 CACATATACATACACTTTCACGTTCACCACATCGG
1 CACATATACATACACTTTCACGTTCACCACATCGG
75341408 CACATATACATACACTTTCACGTTCACCACATCGG
1 CACATATACATACACTTTCACGTTCACCACATCGG
75341443 C
1 C
75341444 CATTAGGCCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.35, G:0.08, T:0.25
Consensus pattern (35 bp):
CACATATACATACACTTTCACGTTCACCACATCGG
Found at i:75341488 original size:49 final size:49
Alignment explanation
Indices: 75341408--75341903 Score: 848
Period size: 49 Copynumber: 10.1 Consensus size: 49
75341398 ACCACATCGG
* *
75341408 CACATATACATACACTTTCACGTTCACCACATCGGCCATTAGGCCTCAT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
75341457 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
*
75341506 CACATATACATACACTTTCACGTTCATCACATCGGCCATTAGGCCTCAT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
* *
75341555 CACATATACATACACTTTCACGTTCACCACATCGGCCATTAGGCCTCAT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
* * *
75341604 CACATATACATACAATTTCACGTTCATCACATCGGCCATTAGGCCTGAT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
*
75341653 CACATATACACATACACTTTCACATTCATCACATCGGCCATTAGGCCTGAT
1 CACATAT--ACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
*
75341704 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
*
75341753 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCAT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
* *
75341802 CACATATACATACACTTTCACGTTCATCACATCGGCCATTAGGCCTTAT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
*
75341851 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
75341900 CACA
1 CACA
75341904 CATATATGTA
Statistics
Matches: 429, Mismatches: 16, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
49 382 0.89
51 47 0.11
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.28
Consensus pattern (49 bp):
CACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCAT
Found at i:75341855 original size:247 final size:245
Alignment explanation
Indices: 75341408--75341903 Score: 875
Period size: 247 Copynumber: 2.0 Consensus size: 245
75341398 ACCACATCGG
*
75341408 CACATATACATACACTTTCACGTTCACCACATCGGCCATTAGGCCTCATCACATATACATACACT
1 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACT
* *
75341473 TTCACATTCATCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCATCACAT
66 TTCACATTCATCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACAT
75341538 CGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCATTAGGCCTCA
131 CGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCATTAGGCCTCA
*
75341603 TCACATATACATACAATTTCACGTTCATCACATCGGCCATTAGGCCTGAT
196 TCACATATACATACAATTTCACATTCATCACATCGGCCATTAGGCCTGAT
* *
75341653 CACATATACACATACACTTTCACATTCATCACATCGGCCATTAGGCCTGATCACATATACATACA
1 CACATAT--ACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACA
*
75341718 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCAC
64 CTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCAC
*
75341783 ATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCATCACATCGGCCATTAGGCCT
129 ATCGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCATTAGGCCT
* * *
75341848 TATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
194 CATCACATATACATACAATTTCACATTCATCACATCGGCCATTAGGCCTGAT
75341900 CACA
1 CACA
75341904 CATATATGTA
Statistics
Matches: 238, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
245 7 0.03
247 231 0.97
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.28
Consensus pattern (245 bp):
CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACT
TTCACATTCATCACATCGGCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACAT
CGGCCATTAGGCCTCATCACATATACATACACTTTCACGTTCACCACATCGGCCATTAGGCCTCA
TCACATATACATACAATTTCACATTCATCACATCGGCCATTAGGCCTGAT
Found at i:75344998 original size:27 final size:27
Alignment explanation
Indices: 75344932--75345046 Score: 101
Period size: 27 Copynumber: 4.3 Consensus size: 27
75344922 AGCATGGCTG
* **
75344932 CCAGAACAGATA-TTGT-GATAGAGTTA
1 CCAGAACAGATATTTGTGGCT-GAGCCA
*
75344958 CCAGATACAGATATTTGTGGCTGAACCA
1 CCAGA-ACAGATATTTGTGGCTGAGCCA
* * * *
75344986 CCAGAACAAATATTTATCGCAGAGCCA
1 CCAGAACAGATATTTGTGGCTGAGCCA
*
75345013 CCAGAATAGATATTTGTGGCAT-AGCCA
1 CCAGAACAGATATTTGTGGC-TGAGCCA
75345040 CCAGAAC
1 CCAGAAC
75345047 GCTTCCTCCA
Statistics
Matches: 70, Mismatches: 15, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
26 5 0.07
27 51 0.73
28 12 0.17
29 2 0.03
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.23
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCTGAGCCA
Found at i:75347714 original size:43 final size:42
Alignment explanation
Indices: 75347652--75347807 Score: 138
Period size: 42 Copynumber: 3.7 Consensus size: 42
75347642 CAATGCTATA
* *
75347652 TCCCAGATATGGTCTTACATGGGATCACATATCGAAGCCAATAG
1 TCCCAGGTATGGTCTTACATGAGATCACATATCGAAGCC-AT-G
* *
75347696 -CCCAGGTATGGTCTTACATGATG-TCCCATATCGATGCCATG
1 TCCCAGGTATGGTCTTACATGA-GATCACATATCGAAGCCATG
* * * *
75347737 TCCCA-GTCATGGTCTTACATGAAATCACATATCGATGTCATA
1 TCCCAGGT-ATGGTCTTACATGAGATCACATATCGAAGCCATG
** * * *
75347779 TCCCAAATATGGTCTCAAATGAAATCACA
1 TCCCAGGTATGGTCTTACATGAGATCACA
75347808 CATAACCCTA
Statistics
Matches: 96, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
41 3 0.03
42 59 0.61
43 33 0.34
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (42 bp):
TCCCAGGTATGGTCTTACATGAGATCACATATCGAAGCCATG
Found at i:75350746 original size:34 final size:34
Alignment explanation
Indices: 75350707--75350782 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
75350697 AATCTGGGCT
* *
75350707 TTAGCCCATATCCA-CAATAGTATCAGTGTGGACC
1 TTAGCCCAT-TACAGCAATAGTAACAGTGTGGACC
* * * *
75350741 TTAGCCTATTACAGTAGTAGTAACAGTGTGGGCC
1 TTAGCCCATTACAGCAATAGTAACAGTGTGGACC
75350775 TTAGCCCA
1 TTAGCCCA
75350783 ATTCAGTACA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
33 3 0.09
34 31 0.91
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (34 bp):
TTAGCCCATTACAGCAATAGTAACAGTGTGGACC
Found at i:75350790 original size:34 final size:34
Alignment explanation
Indices: 75350724--75350790 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
75350714 ATATCCACAA
* *
75350724 TAGTATCAGTGTGGACCTTAGCCTATTACAGTAG
1 TAGTAACAGTGTGGACCTTAGCCAATTACAGTAG
*
75350758 TAGTAACAGTGTGGGCCTTAGCCCAATT-CAGTA
1 TAGTAACAGTGTGGACCTTAG-CCAATTACAGTA
75350791 CAGTATCAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 24 0.83
35 5 0.17
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (34 bp):
TAGTAACAGTGTGGACCTTAGCCAATTACAGTAG
Found at i:75354488 original size:43 final size:43
Alignment explanation
Indices: 75354440--75354561 Score: 174
Period size: 43 Copynumber: 2.8 Consensus size: 43
75354430 ATCAAGATGT
* * *
75354440 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTC
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
75354482 AGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
1 -GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
* * *
75354526 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATC
75354562 AATATGTGTT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
43 68 0.94
44 4 0.06
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
Found at i:75368989 original size:41 final size:40
Alignment explanation
Indices: 75368943--75369108 Score: 158
Period size: 41 Copynumber: 4.0 Consensus size: 40
75368933 CGACTCCTAG
75368943 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGA
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGA
* * * * *
75368983 CTACTGGCTCGAAGGCCCTTCG-GAACTAGGTCCGG-TTATGA
1 C-ACTGGCTCAAAAGCCCTTCGAGACCAAGCT-CGGATTA-GA
* * *
75369024 CACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG-
1 CACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--ATTAGA
*
75369067 CACTGGCTCAGAAGCCCTTCGAGACCAAGCTCGGATTTAGA
1 CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA-TTAGA
75369108 C
1 C
75369109 CCCGATTAGC
Statistics
Matches: 99, Mismatches: 16, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
39 1 0.01
40 22 0.22
41 46 0.46
42 13 0.13
43 13 0.13
44 1 0.01
45 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGA
Found at i:75377329 original size:41 final size:40
Alignment explanation
Indices: 75377276--75377443 Score: 143
Period size: 41 Copynumber: 4.2 Consensus size: 40
75377266 AGTCCGACTC
*
75377276 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
75377315 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
75377355 TTATGACACTGGCTCTAAAAAG-CCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
75377399 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTC-GA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
75377437 TTTAGAC
1 -TTAGAC
75377444 CCCGATTAGC
Statistics
Matches: 104, Mismatches: 10, Indels: 29
0.73 0.07 0.20
Matches are distributed among these distances:
38 1 0.01
39 8 0.08
40 21 0.20
41 57 0.55
42 13 0.12
43 1 0.01
44 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:75386316 original size:2 final size:2
Alignment explanation
Indices: 75386309--75386342 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
75386299 CGGCTCTTGC
75386309 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75386343 TTGCACATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:75387193 original size:79 final size:79
Alignment explanation
Indices: 75387052--75387273 Score: 222
Period size: 79 Copynumber: 2.8 Consensus size: 79
75387042 TATTCGAATG
* * * * *
75387052 ATATCCGGGCTAAGTCCCGAAGG-ATTTTGTGCTAAGT-GACTATATCCGGACTAAGAT-CCGAA
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTGGAGC-GAGTAG-CTAAATCCGG-TTAA-ATCCCGAA
75387114 GGCATTTGTGCGAGTTACT
61 GGCATTTGTGCGAGTTACT
* * *
75387133 A-ATTCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTGGAGCGAG-TAGCTAAATCC-GGTTAAATCCCGAAGG
75387195 CATTTGTGCGAGTTACT
63 CATTTGTGCGAGTTACT
* * * *
75387212 ATATCCGGGCTATGTCCCGAAGGCATTTGAGCGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTGGAGCGAGTAGCTAAATCCGGTTAAATCCCGAAGG
75387274 TATGTGATTC
Statistics
Matches: 119, Mismatches: 13, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
78 1 0.01
79 63 0.53
80 42 0.35
81 13 0.11
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTGGAGCGAGTAGCTAAATCCGGTTAAATCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:75387205 original size:40 final size:40
Alignment explanation
Indices: 75387052--75387259 Score: 255
Period size: 40 Copynumber: 5.2 Consensus size: 40
75387042 TATTCGAATG
* *
75387052 ATATCCGGGCTAAGTCCCGAAGG-ATTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGC-GAGTTACT
*
75387093 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
* *
75387133 A-ATTCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
75387172 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
75387212 ATATCCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
75387252 ATATCCGG
1 ATATCCGG
75387260 TTAAATTCCG
Statistics
Matches: 147, Mismatches: 13, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
39 36 0.24
40 82 0.56
41 27 0.18
42 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:75399922 original size:19 final size:19
Alignment explanation
Indices: 75399898--75399934 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
75399888 ATTTTATTTT
75399898 AATTTTCTT-TATATTACTA
1 AATTTTCTTCTAT-TTACTA
75399917 AATTTTCTTCTATTTACT
1 AATTTTCTTCTATTTACT
75399935 TCTGGCAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.27, C:0.14, G:0.00, T:0.59
Consensus pattern (19 bp):
AATTTTCTTCTATTTACTA
Found at i:75400892 original size:12 final size:13
Alignment explanation
Indices: 75400875--75400906 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
75400865 ATATCACATT
75400875 TCAAAAC-ATGCA
1 TCAAAACTATGCA
75400887 TCAAAACTATGCA
1 TCAAAACTATGCA
75400900 -CAAAACT
1 TCAAAACT
75400907 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:75408046 original size:12 final size:13
Alignment explanation
Indices: 75408029--75408060 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
75408019 ATAGCACATT
75408029 TCAAAAC-ATGCA
1 TCAAAACTATGCA
75408041 TCAAAACTATGCA
1 TCAAAACTATGCA
75408054 -CAAAACT
1 TCAAAACT
75408061 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:75415075 original size:54 final size:54
Alignment explanation
Indices: 75415017--75415146 Score: 138
Period size: 54 Copynumber: 2.4 Consensus size: 54
75415007 ATTACTGAAA
75415017 TACCCTCAAATTGTA-A-AATTACCAAAGTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTC-AATT-TACAGAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTT
* * **** *
75415071 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCAATTTACAGAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTT
** *
75415125 TACCCTTGATTTATAGAATTAC
1 TACCCTCAATTTACAGAATTAC
75415147 TGTTTTACCC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.03
53 4 0.06
54 58 0.91
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (54 bp):
TACCCTCAATTTACAGAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTT
Found at i:75415174 original size:27 final size:27
Alignment explanation
Indices: 75415044--75415174 Score: 201
Period size: 27 Copynumber: 4.9 Consensus size: 27
75415034 ATTACCAAAG
*
75415044 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
75415071 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACT-GTTT
75415098 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
75415125 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
75415152 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTATAGAATTACT
75415175 AAAATACGCT
Statistics
Matches: 95, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
27 94 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:75415186 original size:27 final size:27
Alignment explanation
Indices: 75415156--75415208 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
75415146 CTGTTTTACC
*
75415156 CTCGATTTACAAAATTACTAAAATACG
1 CTCGATTTACAAAATCACTAAAATACG
*
75415183 CTCGGTTTACAAAATCACTAAAATAC
1 CTCGATTTACAAAATCACTAAAATAC
75415209 CCTCTATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (27 bp):
CTCGATTTACAAAATCACTAAAATACG
Found at i:75415210 original size:81 final size:81
Alignment explanation
Indices: 75415044--75415212 Score: 180
Period size: 81 Copynumber: 2.1 Consensus size: 81
75415034 ATTACCAAAG
* **
75415044 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATT
* * * ****
75415109 TATAGAATTACTGTTT
66 TACAAAATCACTAAAA
* * * *
75415125 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTA-C-TAAAATACGCTCGG
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGT--AATACCCTCGA
75415188 TTTACAAAATCACTAAAA
64 TTTACAAAATCACTAAAA
75415206 TACCCTC
1 TACCCTC
75415213 TATCAGTAAA
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 69 0.97
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTATCGTAATACCCTCGATT
TACAAAATCACTAAAA
Found at i:75415237 original size:81 final size:79
Alignment explanation
Indices: 75415152--75415424 Score: 246
Period size: 81 Copynumber: 3.4 Consensus size: 79
75415142 ATTACTGTTT
** * * *
75415152 TACCCTCGATTTACAAAATTACTAAAATACGCTCGGTTTACAAAATCACTAAAATACCCTCTATC
1 TACCCTCGATTTACAAAATTACTAAAATAC-CTCGGTTTGTAAAATTAC-AAAATACCCTCAATT
*
75415217 AGTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
* * ** * * *
75415233 TACCCTAG-TCTGTAAAATTGCTAAAATACCATTGGTTTGTAAAATTACAGAAATACGCTCAATT
1 TACCCTCGATTTACAAAATTACTAAAATACC-TCGGTTTGTAAAATTACA-AAATACCCTCAATT
75415297 TGTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
* ** * * * * *
75415313 TACCC-CTAGTTTGGAAAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCTCGA-TTTACAAAATTACTAAAATACCTC-GGTTTGTAAAATTA-CAAAATACCCTCAAT
75415377 TTGTAAAATTACCAAAA
63 TTGTAAAATTACCAAAA
* *
75415394 TACCCTTGATTTACAAAGTTAC-AGAAATACC
1 TACCCTCGATTTACAAAATTACTA-AAATACC
75415425 CTTGACTTTC
Statistics
Matches: 154, Mismatches: 30, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
79 2 0.01
80 62 0.40
81 88 0.57
82 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (79 bp):
TACCCTCGATTTACAAAATTACTAAAATACCTCGGTTTGTAAAATTACAAAATACCCTCAATTTG
TAAAATTACCAAAA
Found at i:75415286 original size:27 final size:26
Alignment explanation
Indices: 75415218--75415510 Score: 180
Period size: 27 Copynumber: 10.8 Consensus size: 26
75415208 CCCTCTATCA
*
75415218 GTAAAATTACCAAAATACCC-TAGTCT
1 GTAAAATTA-CAAAATACCCTTAGTTT
* * *
75415244 GTAAAATTGCTAAAATACCATTGGTTT
1 GTAAAATTAC-AAAATACCCTTAGTTT
* * *
75415271 GTAAAATTACAGAAATACGCTCAATTT
1 GTAAAATTACA-AAATACCCTTAGTTT
*
75415298 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTA-CAAAATACCCTTAGTTT
*
75415325 GGAAAATTACCAAAATACCAC-TAGTTT
1 GTAAAATTA-CAAAATACC-CTTAGTTT
* * * *
75415352 GTGAAATTACCGAAATACCCTCAATTT
1 GTAAAATTA-CAAAATACCCTTAGTTT
*
75415379 GTAAAATTACCAAAATACCCTT-GATT
1 GTAAAATTA-CAAAATACCCTTAGTTT
*
75415405 -TACAAAGTTACAGAAATACCCTTGACTTT
1 GTA-AAA-TTACA-AAATACCCTT-AGTTT
* ** * *
75415434 CTAAAAATTATGGAAATACCATTGGTTT
1 GT-AAAATTA-CAAAATACCCTTAGTTT
** *
75415462 ACAAAATTACTGAAATACCCTTAGTTT
1 GTAAAATTAC-AAAATACCCTTAGTTT
* * *
75415489 GTAGATTTACCAAAACACCCTT
1 GTAAAATTA-CAAAATACCCTT
75415511 GTAGGATGAA
Statistics
Matches: 208, Mismatches: 43, Indels: 31
0.74 0.15 0.11
Matches are distributed among these distances:
25 3 0.01
26 25 0.12
27 154 0.74
28 7 0.03
29 14 0.07
30 4 0.02
31 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (26 bp):
GTAAAATTACAAAATACCCTTAGTTT
Found at i:75415315 original size:54 final size:53
Alignment explanation
Indices: 75415166--75415397 Score: 200
Period size: 54 Copynumber: 4.3 Consensus size: 53
75415156 CTCGATTTAC
* * ** * * **
75415166 AAAATTACTAAAATACGCTCGGTTTACAAAATCACTAAAATACCCTCTA-TCAGT
1 AAAATTACCAAAATAC-CTCAGTTTGTAAAATTACCAAAATACCCT-TAGTTTGT
* * * * *
75415220 AAAATTACCAAAATACC-CTAGTCTGTAAAATTGCTAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCTC-AGTTTGTAAAATTACCAAAATACCCTTAGTTTGT
* * *
75415273 AAAATTA-CAGAAATACGCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGG
1 AAAATTACCA-AAATAC-CTCAGTTTGTAAAATTACCAAAATACCCTTAGTTTGT
* * * * *
75415327 AAAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCTC-AGTTTGTAAAATTACCAAAATACCCTTAGTTTGT
75415381 AAAATTACCAAAATACC
1 AAAATTACCAAAATACC
75415398 CTTGATTTAC
Statistics
Matches: 144, Mismatches: 27, Indels: 14
0.78 0.15 0.08
Matches are distributed among these distances:
52 4 0.03
53 38 0.26
54 99 0.69
55 3 0.02
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACCAAAATACCTCAGTTTGTAAAATTACCAAAATACCCTTAGTTTGT
Found at i:75415571 original size:27 final size:27
Alignment explanation
Indices: 75415541--75415629 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
75415531 TACCCCTATT
75415541 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAAAGACCGTAAAGCCCCTGTA
* *
75415568 AGGTAAAGAGACCGTAAAGCCCTTGT-
1 AGGTAAAAAGACCGTAAAGCCCCTGTA
**
75415594 AGAGTAAAGTGACCGTAATA-CCCCTGTA
1 AG-GTAAAAAGACCGTAA-AGCCCCTGTA
*
75415622 TGGTAAAA
1 AGGTAAAA
75415630 TGACGAATAT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
26 2 0.04
27 49 0.92
28 2 0.04
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (27 bp):
AGGTAAAAAGACCGTAAAGCCCCTGTA
Found at i:75416515 original size:52 final size:51
Alignment explanation
Indices: 75416437--75416559 Score: 221
Period size: 52 Copynumber: 2.4 Consensus size: 51
75416427 GAGGAAGTGC
75416437 AAAAGAGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGAGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
*
75416489 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGAGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
75416540 AAAAGAGCTT-TGCCCCAGTT
1 AAAAGAGCTTATGCCCCAGTT
75416560 AAAGAGGCTA
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
50 10 0.14
51 24 0.35
52 35 0.51
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (51 bp):
AAAAGAGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:75416534 original size:25 final size:26
Alignment explanation
Indices: 75416437--75416559 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
75416427 GAGGAAGTGC
* **
75416437 AAAAGAGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
75416463 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
75416489 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
75416515 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
75416540 AAAAGAGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
75416560 AAAGAGGCTA
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 32 0.36
26 57 0.64
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:75416760 original size:42 final size:42
Alignment explanation
Indices: 75416701--75416792 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
75416691 TAGTCTCCCC
** *
75416701 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATATGATATTG
*
75416743 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATATGATATTG
75416785 AAATGGGC
1 AAATGGGC
75416793 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATATGATATTG
Found at i:75418872 original size:27 final size:27
Alignment explanation
Indices: 75418722--75418872 Score: 189
Period size: 27 Copynumber: 5.6 Consensus size: 27
75418712 AAGTACCCCC
* *
75418722 GATTTACATAATTACCGTTTTA-CCTT
1 GATTTACAGAATTACTGTTTTACCCTT
* *
75418748 CGACTTACAGAATTA-TAGTTTTACCCTC
1 -GATTTACAGAATTACT-GTTTTACCCTT
* *
75418776 GATTTACAGAAGTACCGTTTTACCCTT
1 GATTTACAGAATTACTGTTTTACCCTT
*
75418803 GATTTATAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACTGTTTTACCCTT
*
75418830 GATTTATAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACTGTTTTACCCTT
*
75418857 GATTTACAAAATTACT
1 GATTTACAGAATTACT
75418873 AAAATACCCT
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
27 105 0.97
28 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.42
Consensus pattern (27 bp):
GATTTACAGAATTACTGTTTTACCCTT
Found at i:75418880 original size:27 final size:27
Alignment explanation
Indices: 75418796--75419124 Score: 193
Period size: 27 Copynumber: 12.1 Consensus size: 27
75418786 AGTACCGTTT
* ****
75418796 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTATAAAATTACTAAAA
* ****
75418823 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTATAAAATTACTAAAA
*
75418850 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * * *
75418877 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* *
75418903 TACCCTTGGTTTGTAAAATTAC-AGAAA
1 TACCCTTGATTTATAAAATTACTA-AAA
** * *
75418930 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* *
75418957 TACCCCT-AGTTTATAAAATTACCAAAA
1 TACCCTTGA-TTTATAAAATTACTAAAA
* * * **
75418984 TACCATT-AGTTTGTGAAATTACCGAAA
1 TACCCTTGA-TTTATAAAATTACTAAAA
** * *
75419011 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACTAAAA
* * *
75419038 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTATAAAATTACTA-AAA
*
75419065 TACCCTTGACTTTCTAAATATTA-TAGAAA
1 TACCCTTGA-TTTATAAA-ATTACTA-AAA
* * * *
75419094 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTATAAAATTACTAAAA
75419121 TACC
1 TACC
75419125 TTTGGTTTGT
Statistics
Matches: 248, Mismatches: 44, Indels: 20
0.79 0.14 0.06
Matches are distributed among these distances:
26 24 0.10
27 194 0.78
28 15 0.06
29 15 0.06
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACTAAAA
Found at i:75418881 original size:54 final size:54
Alignment explanation
Indices: 75418702--75418882 Score: 150
Period size: 54 Copynumber: 3.4 Consensus size: 54
75418692 CTCGACTTGT
* * * * * *
75418702 AAAATTACCAAAGTACCCCCGATTTACATAATTACCGTTTTA-CCTTCGACTTAC
1 AAAATTACTAAAATACCCTCGATTTACAGAAGTACCGTTTTACCCTT-GATTTAC
* *** *
75418756 AGAATTA-TAGTTTTACCCTCGATTTACAGAAGTACCGTTTTACCCTTGATTTAT
1 AAAATTACTA-AAATACCCTCGATTTACAGAAGTACCGTTTTACCCTTGATTTAC
* **** * * * *
75418810 AGAATTACTGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTTGATTTAC
1 AAAATTACTAAAATACCCTCGATTTACAGAAGTACCGTTTTACCCTTGATTTAC
75418864 AAAATTACTAAAATACCCT
1 AAAATTACTAAAATACCCT
75418883 AGTCTGTAAA
Statistics
Matches: 103, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
53 1 0.01
54 97 0.94
55 5 0.05
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.38
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTCGATTTACAGAAGTACCGTTTTACCCTTGATTTAC
Found at i:75418881 original size:81 final size:81
Alignment explanation
Indices: 75418688--75418882 Score: 187
Period size: 81 Copynumber: 2.4 Consensus size: 81
75418678 ATTATTGAAA
* ** * * *
75418688 TACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTACATAATTACCGTTTTACCTTCGACT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTACCTTCGACT
75418753 TACAGAATTATAGTTT
66 TACAGAATTATAGTTT
* * **** * * * *
75418769 TACCCTCGATTTACAGAAGTACCGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTT-GAT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTA-CCTTCGAC
*
75418833 TTATAGAATTACT-GTTT
65 TTACAGAATTA-TAGTTT
* *
75418850 TACCCTTGATTTACAAAATTACTAAAATACCCT
1 TACCCTCGATTTACAAAATTACCAAAATACCCT
75418883 AGTCTGTAAA
Statistics
Matches: 88, Mismatches: 24, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
81 83 0.94
82 5 0.06
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCGTTTTACCTTCGACT
TACAGAATTATAGTTT
Found at i:75419003 original size:81 final size:81
Alignment explanation
Indices: 75418864--75419044 Score: 274
Period size: 81 Copynumber: 2.2 Consensus size: 81
75418854 CTTGATTTAC
* * * * * *
75418864 AAAATTACTAAAATA-CCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACAGA
1 AAAATTACCAAAATACCCCTAGTCTATAAAATTACCAAAATACCATTAGTTTGTAAAATTACAGA
75418928 AATACCCTCAATTTGT
66 AATACCCTCAATTTGT
* * *
75418944 AAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCATTAGTTTGTGAAATTACCGA
1 AAAATTACCAAAATACCCCTAGTCTATAAAATTACCAAAATACCATTAGTTTGTAAAATTACAGA
75419009 AATACCCTCAATTTGT
66 AATACCCTCAATTTGT
75419025 AAAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
75419045 GATTTACAAA
Statistics
Matches: 91, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
80 14 0.15
81 77 0.85
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTAGTCTATAAAATTACCAAAATACCATTAGTTTGTAAAATTACAGA
AATACCCTCAATTTGT
Found at i:75419066 original size:81 final size:81
Alignment explanation
Indices: 75418864--75419097 Score: 267
Period size: 81 Copynumber: 2.9 Consensus size: 81
75418854 CTTGATTTAC
* * ** * * * *
75418864 AAAATTACTAAAATA-CCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACAGA
1 AAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCATTAGTTTGTAAAATTACAGA
75418928 AATACCCTCAATTTGT
66 AATACCCTCAATTTGT
* * *
75418944 AAAATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCATTAGTTTGTGAAATTACCGA
1 AAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCATTAGTTTGTAAAATTACAGA
75419009 AATACCCTCAATTTGT
66 AATACCCTCAATTTGT
* * * *
75419025 AAAATTACCAAAATACCCCT-GATTTACAAAGTTA-CAGAAATACCCTTGACTTTCTAAATATTA
1 AAAATTACCAAAATACCCCTAG-TTTACAAAATTACCA-AAATACCATT-AGTTTGTAAA-ATTA
*
75419088 TAGAAATACC
62 CAGAAATACC
75419098 ATTGGTTTAC
Statistics
Matches: 132, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
80 17 0.13
81 96 0.73
82 7 0.05
83 12 0.09
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCATTAGTTTGTAAAATTACAGA
AATACCCTCAATTTGT
Found at i:75419277 original size:27 final size:27
Alignment explanation
Indices: 75419186--75419277 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
75419176 ACCCCTATTA
* *
75419186 GGTAAAAAGACTGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
75419213 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
75419240 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
75419267 GGTAAAATGAC
1 GGTAAAATGAC
75419278 GAATATGCCC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:75421048 original size:71 final size:71
Alignment explanation
Indices: 75420962--75421125 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
75420952 CGATTTGTCT
75420962 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
75421027 CTTTCA
66 CTTTCA
75421033 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
75421098 CTTTCA
66 CTTTCA
75421104 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
75421126 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:75421163 original size:71 final size:70
Alignment explanation
Indices: 75420962--75421159 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
75420952 CGATTTGTCT
* * * *
75420962 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75421027 CTTTCA
65 CTTTCA
* * * *
75421033 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
75421098 CTTTCA
65 CTTTCA
* *
75421104 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
75421160 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:75423236 original size:25 final size:25
Alignment explanation
Indices: 75423207--75423254 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75423197 TTATAACATG
* * *
75423207 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
75423232 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
75423255 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:75423316 original size:20 final size:20
Alignment explanation
Indices: 75423291--75423341 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
75423281 ATTTTAATAA
75423291 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
75423311 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
75423331 ACATGAGATGT
1 ACATGATATGT
75423342 TCATAAATGC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:75423467 original size:25 final size:24
Alignment explanation
Indices: 75423388--75423581 Score: 270
Period size: 25 Copynumber: 8.0 Consensus size: 24
75423378 AGGAAGTGCA
75423388 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
75423411 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
75423434 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
75423459 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
75423484 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
75423509 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
75423533 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
75423557 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
75423582 GATAAAGCAG
Statistics
Matches: 159, Mismatches: 6, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
23 45 0.28
24 31 0.19
25 83 0.52
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:75423808 original size:31 final size:31
Alignment explanation
Indices: 75423773--75423836 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
75423763 CGTTTACAGT
75423773 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
75423804 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
75423835 AA
1 AA
75423837 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:75432476 original size:32 final size:32
Alignment explanation
Indices: 75432435--75432498 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
75432425 CAATCAAGAA
**
75432435 CAAGTATCCACTGTTTTGAATTGACGATCTGT
1 CAAGTATCCACTGTCGTGAATTGACGATCTGT
75432467 CAAGTATCCACTGTCGTGAATTGACGATCTGT
1 CAAGTATCCACTGTCGTGAATTGACGATCTGT
75432499 TTGATCAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (32 bp):
CAAGTATCCACTGTCGTGAATTGACGATCTGT
Found at i:75432987 original size:17 final size:16
Alignment explanation
Indices: 75432967--75433002 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
75432957 AGTTAGAAGT
*
75432967 TTTCTGGGATTAGCTAG
1 TTTCTAGGATTAGCT-G
75432984 TTTCTAGGATTAGCTG
1 TTTCTAGGATTAGCTG
75433000 TTT
1 TTT
75433003 ATTATAGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.17, C:0.11, G:0.25, T:0.47
Consensus pattern (16 bp):
TTTCTAGGATTAGCTG
Found at i:75434892 original size:48 final size:48
Alignment explanation
Indices: 75434820--75434988 Score: 189
Period size: 48 Copynumber: 3.5 Consensus size: 48
75434810 TGTGTGTGCT
*
75434820 AGTGTAAGACCATGTTTGGGACATGGCATCGACCATATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACCATATTATGAGAGCC
* * * * * *
75434868 AGTGTAAGACCATATTTGGAACATGGCATC-AGCGT-TGATATGTGTGCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACCATAT--TATGAGAGCC
* * * * * *
75434916 AGTGTAAGACCATGTCTAGCACATGGCGTCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCGACCATATTATGAGAGCC
75434964 AGTGTAAGACCATGTTTGGAACATG
1 AGTGTAAGACCATGTTTGGAACATG
75434989 AAATCGAAAT
Statistics
Matches: 95, Mismatches: 22, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
46 1 0.01
47 3 0.03
48 89 0.94
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGACCATATTATGAGAGCC
Done.