Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 248 of 335
Found at i:75434976 original size:96 final size:96
Alignment explanation
Indices: 75434807--75434988 Score: 292
Period size: 96 Copynumber: 1.9 Consensus size: 96
75434797 GACATTTGGG
* * * * *
75434807 TGATGTGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGACCATATTATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGCACATGGCATCGACCACATTATGAGAGCCAGTG
75434872 TAAGACCATATTTGGAACATGGCATCAGCGT
66 TAAGACCATATTTGGAACATGGCATCAGCGT
* *
75434903 TGATATGTGTGCTAGTGTAAGACCATGTCTAGCACATGGCGTCGGCCACATTATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGCACATGGCATCGACCACATTATGAGAGCCAGTG
*
75434968 TAAGACCATGTTTGGAACATG
66 TAAGACCATATTTGGAACATG
75434989 AAATCGAAAT
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 78 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (96 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTAGCACATGGCATCGACCACATTATGAGAGCCAGTG
TAAGACCATATTTGGAACATGGCATCAGCGT
Found at i:75435013 original size:96 final size:96
Alignment explanation
Indices: 75434817--75435041 Score: 281
Period size: 96 Copynumber: 2.3 Consensus size: 96
75434807 TGATGTGTGT
* * *
75434817 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGACCATATTATGAGAGCCAGTGTAAGACCATA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACCATA
** ** * *** *
75434882 TTTGGAACATGGCATCAGCGTTGATATGTGT
66 TTTGGAACATGAAATCAGAATTGAGACAAGA
* * * *
75434913 GCTAGTGTAAGACCATGTCTAGCACATGGCGTCGGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACCATA
75434978 TTTGGAACATGAAATC-GAAATTGAGACAAGA
66 TTTGGAACATGAAATCAG-AATTGAGACAAGA
*
75435009 GCTAGTGTAAGACCATGTCTAGGACATGCCATC
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATC
75435042 AGCAATTTAC
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
95 1 0.01
96 108 0.99
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACCATA
TTTGGAACATGAAATCAGAATTGAGACAAGA
Found at i:75441536 original size:50 final size:49
Alignment explanation
Indices: 75441476--75441651 Score: 187
Period size: 50 Copynumber: 3.5 Consensus size: 49
75441466 GAATACACGA
75441476 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCATATTGTTAAGTCGAAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCATA-TGTTAAGTCGAAT
* * * * *
75441526 GTGTAGTACTAAGTGTAGGCTACTATGCGTACTCA-ATGACTT-CGATC-ACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CATATG--TTAAG-TCGA-AT
* * *
75441577 GTGTAGTACTAAGTGTAGGCTACTACGTGTACCATACTGTTAAGTTGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCATA-TGTTAAGTCGAAT
*
75441627 GTGTAGTTCTAAGTGCAGGCTACTA
1 GTGTAGTACTAAGTGCAGGCTACTA
75441652 TGCGTATCAG
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
49 2 0.02
50 61 0.59
51 39 0.38
52 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (49 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCATATGTTAAGTCGAAT
Found at i:75441670 original size:101 final size:101
Alignment explanation
Indices: 75441471--75441657 Score: 311
Period size: 101 Copynumber: 1.9 Consensus size: 101
75441461 ATTGTGAATA
*
75441471 CACGAGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATATTGTTAAGTCGAATGTGTAGTACT
1 CACGAGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGAATGTGTAGTACT
*
75441536 AAGTGTAGGCTACTATGCGTACTCAATGACTTCGAT
66 AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
* * * * *
75441572 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCATACTGTTAAGTTGCATGTGTAGTTCT
1 CACGAGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGAATGTGTAGTACT
75441637 AAGTGCAGGCTACTATGCGTA
66 AAGTGCAGGCTACTATGCGTA
75441658 TCAGATAGCT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 79 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (101 bp):
CACGAGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGAATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
Found at i:75447977 original size:30 final size:29
Alignment explanation
Indices: 75447883--75447984 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
75447873 TATAGTGAAT
* * *
75447883 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
75447912 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
75447940 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
75447970 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
75447985 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:75449627 original size:48 final size:48
Alignment explanation
Indices: 75449551--75449771 Score: 179
Period size: 48 Copynumber: 4.6 Consensus size: 48
75449541 GGATGTCACA
* *
75449551 GTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGACAGA
1 GTAAGACCATGTCTGGAACATGGCATCGGCCACATTATGAGAGACAGT
* * * *** * *
75449599 ATAAAACCATGTTTGGAACATGGCATCGGCGTTGA-TATGTGTG-CTAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGC-CACATTATGAGAGAC-AGT
* *
75449647 GTAAGACCATGTCTGGGACATGGCGTCGGCCACATTATGAGA-ACCAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCCACATTATGAGAGA-CAGT
* *
75449695 GTAAGACCATATATGGAACATGGCATCGG---CATTGA-GACGAGAGCTAGT
1 GTAAGACCATGTCTGGAACATGGCATCGGCCACATT-ATGA-GAGA-C-AGT
*
75449743 GTAAGACTATGTCTTGG-ACATGGCATCGG
1 GTAAGACCATGTC-TGGAACATGGCATCGG
75449772 TAATTTACCC
Statistics
Matches: 135, Mismatches: 28, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
45 6 0.04
46 3 0.02
47 4 0.03
48 117 0.87
49 5 0.04
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GTAAGACCATGTCTGGAACATGGCATCGGCCACATTATGAGAGACAGT
Found at i:75449715 original size:96 final size:96
Alignment explanation
Indices: 75449551--75449771 Score: 309
Period size: 96 Copynumber: 2.3 Consensus size: 96
75449541 GGATGTCACA
* *
75449551 GTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGACAGAATAAAACCATGTTTGGA
1 GTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGACAGAATAAAACCATATATGGA
* * * * *
75449616 ACATGGCATCGGCGTTGATATGTGTGCTAGT
66 ACATGGCATCGGCATTGAGACGAGAGCTAGT
* ** *
75449647 GTAAGACCATGTCTGGGACATGGCGTCGGCCACATTATGAGA-ACCAGTGTAAGACCATATATGG
1 GTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGA-CAGAATAAAACCATATATGG
75449711 AACATGGCATCGGCATTGAGACGAGAGCTAGT
65 AACATGGCATCGGCATTGAGACGAGAGCTAGT
* *
75449743 GTAAGACTATGTCTTGGACATGGCATCGG
1 GTAAGACCATGTCTGGGACATGGCATCGG
75449772 TAATTTACCC
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
95 1 0.01
96 109 0.99
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (96 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGACAGAATAAAACCATATATGGA
ACATGGCATCGGCATTGAGACGAGAGCTAGT
Found at i:75458820 original size:39 final size:39
Alignment explanation
Indices: 75458777--75458856 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
75458767 TTTCATCATT
75458777 TTAACCAAATTATGCAAGAAGAGAAGACAAAGTTTTAGG
1 TTAACCAAATTATGCAAGAAGAGAAGACAAAGTTTTAGG
*
75458816 TTAACCAAATTATGCAAGAAGAGAAGCCAAAGTTTTAGG
1 TTAACCAAATTATGCAAGAAGAGAAGACAAAGTTTTAGG
75458855 TT
1 TT
75458857 TTCATTTGGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.44, C:0.11, G:0.20, T:0.25
Consensus pattern (39 bp):
TTAACCAAATTATGCAAGAAGAGAAGACAAAGTTTTAGG
Found at i:75459616 original size:40 final size:38
Alignment explanation
Indices: 75459557--75459648 Score: 121
Period size: 40 Copynumber: 2.4 Consensus size: 38
75459547 ATCAGGTATT
* * *
75459557 TATGGCACTCAGTGTGCAATTTGACCTAGCTTCGGCTATA
1 TATGGCACTTAGTGAGCAATTTGACATAGCTTCGG-T-TA
* *
75459597 TATGGCACTTATTGAGCAATTTGAGATAGCTTCGGTTA
1 TATGGCACTTAGTGAGCAATTTGACATAGCTTCGGTTA
75459635 TATGGCACTTAGTG
1 TATGGCACTTAGTG
75459649 TGTCAGATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 15 0.33
39 1 0.02
40 30 0.65
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (38 bp):
TATGGCACTTAGTGAGCAATTTGACATAGCTTCGGTTA
Found at i:75459677 original size:28 final size:28
Alignment explanation
Indices: 75459635--75459707 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
75459625 GCTTCGGTTA
*
75459635 TATGGCACTTAGTGTGTCAGATATCGAG
1 TATGGCACTTAGTGTGTCAGATATCGAC
* **
75459663 TGTGGCACTTAGTGTGAGAGATATCGAC
1 TATGGCACTTAGTGTGTCAGATATCGAC
75459691 TATGGCACTTAGTGTGT
1 TATGGCACTTAGTGTGT
75459708 GAGGCATTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.23, C:0.14, G:0.30, T:0.33
Consensus pattern (28 bp):
TATGGCACTTAGTGTGTCAGATATCGAC
Found at i:75461242 original size:43 final size:42
Alignment explanation
Indices: 75461192--75461275 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
75461182 TCCCGGACGT
* * *
75461192 GGTCTTACATGTAATTCAG-TATCAATGCCTCTGTCCCAGACAA
1 GGTCTTACACG-AAATCAGATA-CAATGCCTATGTCCCAGACAA
*
75461235 GGTCTTACACGAAATCAGATACGATGCCTATGTCCCAGACA
1 GGTCTTACACGAAATCAGATACAATGCCTATGTCCCAGACA
75461276 TCGCCTTACT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 24 0.67
43 12 0.33
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAAATCAGATACAATGCCTATGTCCCAGACAA
Found at i:75468364 original size:41 final size:41
Alignment explanation
Indices: 75468302--75468396 Score: 138
Period size: 41 Copynumber: 2.3 Consensus size: 41
75468292 TGCGGATACT
* *
75468302 CCACAGCTCATGTGAGCAGCATCGTGTAGCTACG-TTCTGAC
1 CCACAGCTCGTGTGAGCAGCATCGTATAGCTACGTTTC-GAC
* *
75468343 CCACAGCTCGTGTGAGTAGCATCGTATAGCTATGTTTCGAC
1 CCACAGCTCGTGTGAGCAGCATCGTATAGCTACGTTTCGAC
75468384 CCACAGCTCGTGT
1 CCACAGCTCGTGT
75468397 AAGCGTATCG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 46 0.94
42 3 0.06
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.26
Consensus pattern (41 bp):
CCACAGCTCGTGTGAGCAGCATCGTATAGCTACGTTTCGAC
Found at i:75468441 original size:25 final size:25
Alignment explanation
Indices: 75468385--75468479 Score: 70
Period size: 25 Copynumber: 3.8 Consensus size: 25
75468375 TGTTTCGACC
* *
75468385 CACAGCTCGTGTA-AGCGTATCGATT
1 CACAGCTCGTG-AGAGCATACCGATT
* * *
75468410 TATAGCTCGTGAGAGCATACTGA-T
1 CACAGCTCGTGAGAGCATACCGATT
* *
75468434 CTACAGCTCGAGTGAGCATACCGATT
1 C-ACAGCTCGTGAGAGCATACCGATT
*
75468460 CATAGCTCGT-ATGAGCATAC
1 CACAGCTCGTGA-GAGCATAC
75468480 ATGTACATAA
Statistics
Matches: 53, Mismatches: 13, Indels: 8
0.72 0.18 0.11
Matches are distributed among these distances:
24 2 0.04
25 49 0.92
26 2 0.04
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
CACAGCTCGTGAGAGCATACCGATT
Found at i:75472315 original size:28 final size:28
Alignment explanation
Indices: 75472246--75472346 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
75472236 GAAGGGTATG
* * * *
75472246 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
75472276 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
75472304 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
75472333 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75472347 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:75474386 original size:41 final size:41
Alignment explanation
Indices: 75474341--75474458 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
75474331 TGAAAGATAA
75474341 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
75474382 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
75474412 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
75474453 ATGTAG
1 ATGTAG
75474459 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:75474400 original size:71 final size:71
Alignment explanation
Indices: 75474276--75474472 Score: 357
Period size: 71 Copynumber: 2.8 Consensus size: 71
75474266 ACACCCTGTA
*
75474276 GTAGCTAGGTCACATGCGTGA-T--AAGTGAAGGAC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
75474337 ATAAAT
66 ATAAAT
75474343 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
75474408 ATAAAT
66 ATAAAT
75474414 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
75474473 AGACAAATCG
Statistics
Matches: 125, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
67 20 0.16
68 1 0.01
70 11 0.09
71 93 0.74
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (71 bp):
GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
ATAAAT
Found at i:75482958 original size:28 final size:28
Alignment explanation
Indices: 75482889--75482989 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
75482879 GAAGGGTATG
* * * *
75482889 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
75482919 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
75482947 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
75482976 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75482990 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:75490039 original size:15 final size:15
Alignment explanation
Indices: 75490019--75490049 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
75490009 AAATATGAAA
75490019 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
75490034 GATATGTTTTGTATT
1 GATATGTTTTGGATT
75490049 G
1 G
75490050 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:75492219 original size:27 final size:27
Alignment explanation
Indices: 75492180--75492233 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
75492170 ATCATAGCAC
*
75492180 AAATCAGTCTTTTACCCTCGAGGGGTA
1 AAATCAGTCTTTTACCCTAGAGGGGTA
*
75492207 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTC-TTTTACCCTAGAGGGGTA
75492234 TTTTATTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (27 bp):
AAATCAGTCTTTTACCCTAGAGGGGTA
Found at i:75500776 original size:2 final size:2
Alignment explanation
Indices: 75500769--75500795 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
75500759 TAGTTGAACT
75500769 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
75500796 GCGCTTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:75507713 original size:40 final size:40
Alignment explanation
Indices: 75507662--75507869 Score: 215
Period size: 40 Copynumber: 5.2 Consensus size: 40
75507652 CGAATGATAC
* *
75507662 CCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGATTATA-
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
*
75507701 CCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CC-GGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* ** *
75507742 CCGAGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTATAT
* * * ** *
75507782 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* * * * *
75507822 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
75507862 CC-GGCTAA
1 CCGGGCTAA
75507870 ATTCCGAAGA
Statistics
Matches: 142, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 8 0.06
40 130 0.92
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
Found at i:75515878 original size:40 final size:40
Alignment explanation
Indices: 75515784--75515990 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
75515774 TGAATGATAC
* *
75515784 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
75515823 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
75515863 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
75515903 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
75515943 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
75515983 CC-GGCTAA
1 CCGGGCTAA
75515991 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
39 45 0.31
40 98 0.68
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:75517518 original size:21 final size:20
Alignment explanation
Indices: 75517485--75517533 Score: 82
Period size: 21 Copynumber: 2.5 Consensus size: 20
75517475 GAAAACCTTA
75517485 AGAT-GAAATAGTAATGACT
1 AGATAGAAATAGTAATGACT
75517504 AGATAGAATATAGTAATGACT
1 AGATAGAA-ATAGTAATGACT
75517525 AGATAGAAA
1 AGATAGAAA
75517534 CATGATATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.14
20 4 0.14
21 20 0.71
ACGTcount: A:0.51, C:0.04, G:0.20, T:0.24
Consensus pattern (20 bp):
AGATAGAAATAGTAATGACT
Found at i:75524290 original size:40 final size:40
Alignment explanation
Indices: 75524245--75524411 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
75524235 CGGAATATAA
75524245 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
75524285 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** *
75524325 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
75524365 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
75524404 CCGGATAT
1 CCGGATAT
75524412 CATTCAATTT
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
39 15 0.14
40 94 0.86
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:75526929 original size:14 final size:14
Alignment explanation
Indices: 75526910--75526938 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
75526900 ACTCTCTAAA
75526910 ATGTTTCCTCCCAC
1 ATGTTTCCTCCCAC
75526924 ATGTTTCCTCCCAC
1 ATGTTTCCTCCCAC
75526938 A
1 A
75526939 CTATTTACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.41, G:0.07, T:0.34
Consensus pattern (14 bp):
ATGTTTCCTCCCAC
Found at i:75533482 original size:46 final size:47
Alignment explanation
Indices: 75533334--75533595 Score: 256
Period size: 46 Copynumber: 5.6 Consensus size: 47
75533324 GTATAATGCT
* * *
75533334 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCCG-TGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-ACATCT-CGAGGCC
* *
75533384 GATGCATGTCCCAGACATGTCTTACAGTA--AC-ACATCTCGTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCG-AGGCC
* *
75533428 GATGCATGTCCTAGACATGTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAGGCC
* * * *
75533474 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAGGCC
* * *
75533520 GATGCCATATCCCAGACATGGTCTTACACTAGCTCTCACA-AT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-ACATCTCGAGGCC
75533568 GATGCATGT-CCAGACATGTCTTACACTA
1 GATGCATGTCCCAGACATGTCTTACACTA
75533596 CCACACACGC
Statistics
Matches: 179, Mismatches: 22, Indels: 27
0.79 0.10 0.12
Matches are distributed among these distances:
43 2 0.01
44 34 0.19
45 12 0.07
46 62 0.35
47 18 0.10
48 31 0.17
49 15 0.08
50 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAGGCC
Found at i:75535246 original size:27 final size:27
Alignment explanation
Indices: 75535208--75535263 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
75535198 TACTATGATA
75535208 CCGATCTGACCCTTCACATGTTATCTC
1 CCGATCTGACCCTTCACATGTTATCTC
75535235 CCGATCTGACCCTTCACATGTTATCTC
1 CCGATCTGACCCTTCACATGTTATCTC
75535262 CC
1 CC
75535264 TGACGGATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.39, G:0.11, T:0.32
Consensus pattern (27 bp):
CCGATCTGACCCTTCACATGTTATCTC
Found at i:75538483 original size:9 final size:9
Alignment explanation
Indices: 75538469--75538501 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
75538459 GTTAAACGAA
75538469 TCGAGTTAT
1 TCGAGTTAT
*
75538478 TCGAGTTAA
1 TCGAGTTAT
75538487 TCGAGTTAT
1 TCGAGTTAT
75538496 TCGAGT
1 TCGAGT
75538502 CAACTTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:75538490 original size:18 final size:18
Alignment explanation
Indices: 75538467--75538501 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
75538457 GAGTTAAACG
75538467 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
75538485 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
75538502 CAACTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:75538570 original size:9 final size:9
Alignment explanation
Indices: 75538553--75538589 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
75538543 TGAGTTTTCG
75538553 AATTCGAAT
1 AATTCGAAT
*
75538562 AACTCGAAT
1 AATTCGAAT
*
75538571 AATTTGAAT
1 AATTCGAAT
75538580 AATTCGAAT
1 AATTCGAAT
75538589 A
1 A
75538590 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:75539594 original size:8 final size:8
Alignment explanation
Indices: 75539581--75539605 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
75539571 ATGATAAAAT
75539581 AAAATTCG
1 AAAATTCG
75539589 AAAATTCG
1 AAAATTCG
75539597 AAAATTCG
1 AAAATTCG
75539605 A
1 A
75539606 TTAACTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.24
Consensus pattern (8 bp):
AAAATTCG
Found at i:75539630 original size:5 final size:5
Alignment explanation
Indices: 75539620--75539645 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
75539610 CTTGAAAATT
75539620 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
75539646 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:75540848 original size:16 final size:15
Alignment explanation
Indices: 75540822--75540856 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
75540812 TGATGTGAAT
75540822 AATATAAAATATTAA
1 AATATAAAATATTAA
*
75540837 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
75540853 AATA
1 AATA
75540857 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:75541039 original size:20 final size:20
Alignment explanation
Indices: 75540982--75541041 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
75540972 AATACTACAT
75540982 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
75541001 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
75541024 AAATATGTACATAATATA
1 AAATATGTACATAATATA
75541042 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:75541050 original size:25 final size:25
Alignment explanation
Indices: 75540995--75541169 Score: 110
Period size: 25 Copynumber: 7.0 Consensus size: 25
75540985 TATGTACATA
* * *
75540995 TATAAAAAATAAATACGTGATA-A-
1 TATAAAAAATATATACATAATATAG
* *
75541018 TATTAAAAATATGTACATAATATAG
1 TATAAAAAATATATACATAATATAG
* *
75541043 TGTAAAAAAATACATACATAATATA-
1 TAT-AAAAAATATATACATAATATAG
* *
75541068 -AT-TAAAATATATACATAAGATAACATG
1 TATAAAAAATATATACAT-A-AT-ATA-G
*
75541095 TA-AAAAATATATATAAATAATATAG
1 TATAAAAA-ATATATACATAATATAG
* * *
75541120 TATTAAAGATATATACATAAAATAG
1 TATAAAAAATATATACATAATATAG
* * *
75541145 TATAATATATATATACGTAATATAG
1 TATAAAAAATATATACATAATATAG
75541170 AATTTAGAAT
Statistics
Matches: 115, Mismatches: 25, Indels: 22
0.71 0.15 0.14
Matches are distributed among these distances:
22 12 0.10
23 18 0.16
24 4 0.03
25 42 0.37
26 23 0.20
27 2 0.02
28 5 0.04
29 9 0.08
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (25 bp):
TATAAAAAATATATACATAATATAG
Found at i:75541060 original size:26 final size:25
Alignment explanation
Indices: 75541022--75541084 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
75541012 TGATAATATT
** *
75541022 AAAAATATGTACATAATATAGTGTAA
1 AAAAATACATACATAATATAAT-TAA
75541048 AAAAATACATACATAATATAATTAA
1 AAAAATACATACATAATATAATTAA
*
75541073 AATATATACATA
1 AA-AAATACATA
75541085 AGATAACATG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 5 0.16
26 27 0.84
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (25 bp):
AAAAATACATACATAATATAATTAA
Found at i:75541074 original size:22 final size:22
Alignment explanation
Indices: 75541049--75541090 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
75541039 ATAGTGTAAA
*
75541049 AAAATACATACATAATATAATT
1 AAAATACATACATAAGATAATT
*
75541071 AAAATATATACATAAGATAA
1 AAAATACATACATAAGATAA
75541091 CATGTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (22 bp):
AAAATACATACATAAGATAATT
Found at i:75541169 original size:50 final size:49
Alignment explanation
Indices: 75541018--75541236 Score: 151
Period size: 50 Copynumber: 4.4 Consensus size: 49
75541008 TACGTGATAA
* * * * *
75541018 TATTAAAAATATGTACATAATATAGTGTAAAAAAATACATACATAATATA-
1 TATT-AAAATATATACATAAAATAGTAT-AAAATATATATACATAATATAG
* * *
75541068 -ATTAAAATATATACATAAGATAACATGTAAAAAATATATATAAATAATATAG
1 TATTAAAATATATACAT-A-A-AATA-GTATAAAATATATATACATAATATAG
* *
75541120 TATTAAAGATATATACATAAAATAGTATAATATATATATACGTAATATAG
1 TATTAAA-ATATATACATAAAATAGTATAAAATATATATACATAATATAG
* * * * * * * * *
75541170 AATTTAGA-ATATACCTAATATATTAAAAGAATATATATATATAATATAA
1 TATTAAAATATATACATAAAATAGTATAA-AATATATATACATAATATAG
75541219 TATTAAGAA-ATATA-ATAA
1 TATTAA-AATATATACATAA
75541237 TAACAAAAAA
Statistics
Matches: 132, Mismatches: 28, Indels: 19
0.74 0.16 0.11
Matches are distributed among these distances:
48 28 0.21
49 28 0.21
50 33 0.25
51 23 0.17
52 3 0.02
53 7 0.05
54 10 0.08
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (49 bp):
TATTAAAATATATACATAAAATAGTATAAAATATATATACATAATATAG
Found at i:75541749 original size:30 final size:30
Alignment explanation
Indices: 75541715--75541800 Score: 154
Period size: 30 Copynumber: 2.9 Consensus size: 30
75541705 GGGGTGGTGG
* *
75541715 AGTGTGGCTAGTGGAGTAGGTAGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
75541745 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
75541775 AGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGTGGAGTTGGTGGTGG
75541801 CAAAGGCTAG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.17, C:0.06, G:0.50, T:0.27
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:75541758 original size:18 final size:18
Alignment explanation
Indices: 75541735--75541790 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
75541725 GTGGAGTAGG
75541735 TAGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
75541753 TAGT-G-G--AGT-TGG-
1 TAGTGGAGCAAGTGTGGC
*
75541765 TGGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
75541783 TAGTGGAG
1 TAGTGGAG
75541791 TTGGTGGTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 3 0.10
13 4 0.13
14 4 0.13
16 4 0.13
17 4 0.13
18 11 0.37
ACGTcount: A:0.20, C:0.07, G:0.48, T:0.25
Consensus pattern (18 bp):
TAGTGGAGCAAGTGTGGC
Found at i:75542524 original size:87 final size:88
Alignment explanation
Indices: 75542433--75542682 Score: 301
Period size: 87 Copynumber: 2.8 Consensus size: 88
75542423 AAACAGATAT
* * * * *
75542433 TAAAATAGAAATTGAAAATAGCTCGGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 TAAAAAAGAAATTGAAAATACCTCGG-ACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
75542498 TTGATTTTT-A-AAACA-AAATTTG
65 TTGATTTTTGACAAACATAAA-TTG
* ** *
75542520 TAAAACAGATTTTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 TAAAAAAGAAATTGAAAATACCTCGG-ACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
75542585 TTGATTTTTTTGACAAACATAAATTG
65 TTGA--TTTTTGACAAACATAAATTG
* * * * *
75542611 AAAAAAAGAAATTGAAAATACCTCAG-CGTGTCCTGAGGCTGAACTCACCTCTCGCAATATGAGT
1 TAAAAAAGAAATTGAAAATACCTCGGACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
75542675 TGATTTTT
66 TGATTTTT
75542683 TTTGGAAAAA
Statistics
Matches: 140, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
87 65 0.46
89 42 0.30
90 1 0.01
91 29 0.21
92 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (88 bp):
TAAAAAAGAAATTGAAAATACCTCGGACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGACAAACATAAATTG
Found at i:75542717 original size:91 final size:88
Alignment explanation
Indices: 75542470--75543138 Score: 455
Period size: 91 Copynumber: 7.6 Consensus size: 88
75542460 ACGTGAGCCA
* * **
75542470 AGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT--AAAACAAAATTTGTAAAACAGATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAA-TTGAAAAACAGAAA
* * * *
75542531 TTGAAAATACCTCGGTATGTGACCCG
65 TTGAAAATACCTCAG--CGTGTCCTG
* *
75542557 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACA-AAATTGAAAAACAGAAA
75542622 TTGAAAATACCTCAGCGTGTCCTG
65 TTGAAAATACCTCAGCGTGTCCTG
*
75542646 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGGAAAAACAAAATTTGAAAAACAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTT-GAAAAACAAAA-TTGAAAAACAGA
* * * * *
75542711 ATTTGAAAAGACCTC-TCGTAAT-ATG
63 AATTGAAAATACCTCAGCGT-GTCCTG
* * * ** ****** * *** ** **
75542736 A-G-TTAA-T----TTTTGCAA-A-GCA-TAAATTGAAAAAAAAAAGAAAAAACATCAATTGAAA
1 AGGCTCAACTCACCTCTCGCAATATG-AGTTGATTTTTTTGAAAAACAAAATTGAAAAACAGAAA
* ** ** * *
75542791 AT--ACCT-CGGC-GTGTGACCTG
65 TTGAAAATACCTCAGCGTGTCCTG
* *
75542811 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACA-AAATTG-AAAAACAGAA
75542876 ATTGAAAATACCTCAGCGTGTCCTG
64 ATTGAAAATACCTCAGCGTGTCCTG
*
75542901 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGGAAAAACAAAATTTGAAAAACAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTT-GAAAAACAAAA-TTGAAAAACAGA
* ** *
75542966 ATTTGAAAATACCTCAGCGTGTGAGTCA
63 AATTGAAAATACCTCAGCGTGT-CCT-G
* * * * * *
75542994 AGGCTCAACTCACCACTCGTAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACA-AAATTGAAAAACAGAAA
* * * *
75543059 TGGAAAACACCTCAAC--GTCTTG
65 TTGAAAATACCTCAGCGTGTCCTG
* * * *
75543081 AGGTTCAACTCACCTCTAGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACA-AAATTGAAAA
75543139 TACCTCAACG
Statistics
Matches: 446, Mismatches: 103, Indels: 66
0.73 0.17 0.11
Matches are distributed among these distances:
75 7 0.02
76 2 0.00
77 3 0.01
78 8 0.02
79 9 0.02
80 2 0.00
81 3 0.01
82 8 0.02
83 8 0.02
84 10 0.02
85 3 0.01
86 8 0.02
87 84 0.19
88 6 0.01
89 47 0.11
90 55 0.12
91 131 0.29
92 24 0.05
93 28 0.06
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.28
Consensus pattern (88 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAATTGAAAAACAGAAAT
TGAAAATACCTCAGCGTGTCCTG
Found at i:75542719 original size:13 final size:14
Alignment explanation
Indices: 75542687--75542719 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
75542677 ATTTTTTTTG
75542687 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
75542701 GAAAAACAGAATTT
1 GAAAAACAAAATTT
75542715 GAAAA
1 GAAAA
75542720 GACCTCTCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:75542974 original size:13 final size:14
Alignment explanation
Indices: 75542942--75542974 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
75542932 ATTTTTTTTG
75542942 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
75542956 GAAAAACAGAATTT
1 GAAAAACAAAATTT
75542970 GAAAA
1 GAAAA
75542975 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:75543048 original size:183 final size:180
Alignment explanation
Indices: 75542785--75543119 Score: 458
Period size: 183 Copynumber: 1.8 Consensus size: 180
75542775 AAAACATCAA
* * * *
75542785 TTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCGTGTGACCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
* * * * *
75542850 GACAAACATAAATTGAAAAAAAAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTGAACTCACC
66 GACAAACAGAAATTGAAAAAAAA-AAATGGAAAACACCTCAAC--GTCCTGAGGCTCAACTCACC
* *
75542915 TCTCGCAATATGAGTTGATTTTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
128 TCTAGCAATATGAGCTGATTTTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
* *
75542968 TTGAAAATACCTCAGCGTGTGA-GTCAAGGCTCAACTCACCACTCGTAATATGAGCTGATTTTTT
1 TTGAAAATACCTCAGCGTGTGACCT-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
* * * *
75543032 TGA-AACACAGAAATTGAAGAACAAAAATGGAAAACACCTCAACGTCTTGAGGTTCAACTCACCT
65 TGACAA-ACAGAAATTGAAAAAAAAAAATGGAAAACACCTCAACGTCCTGAGGCTCAACTCACCT
75543096 CTAGCAATATGAGCTGATTTTTTT
129 CTAGCAATATGAGCTGATTTTTTT
75543120 GAAAGACAGA
Statistics
Matches: 133, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
180 40 0.30
182 19 0.14
183 74 0.56
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.28
Consensus pattern (180 bp):
TTGAAAATACCTCAGCGTGTGACCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
GACAAACAGAAATTGAAAAAAAAAAATGGAAAACACCTCAACGTCCTGAGGCTCAACTCACCTCT
AGCAATATGAGCTGATTTTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
Found at i:75543412 original size:73 final size:73
Alignment explanation
Indices: 75543045--75543799 Score: 918
Period size: 73 Copynumber: 10.3 Consensus size: 73
75543035 AACACAGAAA
* * * * *
75543045 TTGAAGAACAAAAATGGAAAACACCTCAAC--GTCTTGAGGTTCAACTCACCTCTAGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
75543108 GCTGATTTTT
65 GTTGA-TTTT
* * *
75543118 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
75543183 GTTGAATTTT
65 GTTG-ATTTT
* * *
75543193 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
75543258 GTTGA-ATT
65 GTTGATTTT
* * * * *
75543266 TTG-AAACAGAAA-TAAAAATTATCTCAGCGT-T-TTGAAGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
75543327 GCTGATTTTT
65 GTTGA-TTTT
*
75543337 TTGAAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
75543402 GTTGA-TTT
65 GTTGATTTT
* * * *
75543410 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
75543475 GCTGATTTTT
65 GTTGA-TTTT
*
75543485 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
75543550 GTTGA-TTT
65 GTTGATTTT
* * * * * *
75543558 TTGACAAACAAAAATTGAAATTACCTCAGCGTATCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
75543623 GTTGATTTT
65 GTTGATTTT
*
75543632 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
75543697 GTTGA-GTT
65 GTTGATTTT
* * * * * *
75543705 TTGACAAACAAAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
75543770 GTTGATTTT
65 GTTGATTTT
* * *
75543779 TTTAGAAACATAAATTAAAAA
1 TTGA-AAACAGAAATTGAAAA
75543800 AACGAAAATT
Statistics
Matches: 595, Mismatches: 66, Indels: 41
0.85 0.09 0.06
Matches are distributed among these distances:
69 29 0.05
70 6 0.01
71 21 0.04
72 6 0.01
73 235 0.39
74 95 0.16
75 202 0.34
76 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:75543508 original size:148 final size:148
Alignment explanation
Indices: 75543056--75543866 Score: 1053
Period size: 148 Copynumber: 5.4 Consensus size: 148
75543046 TGAAGAACAA
* * * * *
75543056 AAATGGAAAACACCTCAAC--GTCTTGAGGTTCAACTCACCTCTAGCAATATGAGCTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
* * * * * *
75543119 TGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGA
64 TGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
75543183 GTTGAATTTTTTGAAAGACAG
128 GTTGATTTTTTTGAAAGACAG
* * * *
75543204 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* ** * * * *
75543269 --AAACAGAAATAAAAATTATCTCAGCGT-T-TTGAAGTTCAACTCACCTCTCGCAATATGAGCT
66 ACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
75543330 GATTTTTTTGAAAGATAG
131 GATTTTTTTGAAAGACAG
75543348 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
75543413 ACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCT
66 ACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
75543478 GATTTTTTTGAAAGACAG
131 GATTTTTTTGAAAGACAG
*
75543496 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * *
75543561 ACAAACAAAAATTGAAATTACCTCAGCGTATCCTGAGGCTCAACTCACCTATCGCAATATGAGTT
66 ACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
75543626 GA-TTTTTTGAAAAACAG
131 GATTTTTTTGAAAGACAG
* *
75543643 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGAGTTTTG
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* * *
75543708 ACAAACAAAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTT
66 ACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
75543773 GATTTTTTTAGAAACATAAATTAAAAAAACG
131 GATTTTTTT-G-----------AAAGACA-G
* *
75543804 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 -AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
75543867 GAAAAGCAGA
Statistics
Matches: 592, Mismatches: 50, Indels: 28
0.88 0.07 0.04
Matches are distributed among these distances:
144 104 0.18
145 1 0.00
146 43 0.07
147 142 0.24
148 203 0.34
149 1 0.00
150 33 0.06
160 6 0.01
161 1 0.00
162 58 0.10
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (148 bp):
AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
ACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTGAAAGACAG
Found at i:75544004 original size:14 final size:13
Alignment explanation
Indices: 75543969--75544013 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
75543959 TTGATTTTTG
75543969 AAAAACAGAAATT
1 AAAAACAGAAATT
*
75543982 AAAAGCAGAAATT
1 AAAAACAGAAATT
75543995 GAAAAACAGAAATT
1 -AAAAACAGAAATT
75544009 AAAAA
1 AAAAA
75544014 TACCTCGGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.69, C:0.07, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:75544030 original size:100 final size:101
Alignment explanation
Indices: 75543797--75544085 Score: 442
Period size: 100 Copynumber: 2.9 Consensus size: 101
75543787 CATAAATTAA
*
75543797 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
75543861 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
75543896 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
75543961 GATTTTTGAAAAACAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* * *
75543996 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCTGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
75544061 AATTTTTGAAAAGCATAAATTGAAA
66 GATTTTTGAAAAGCAGAAATTGAAA
75544086 TTACCTCAGC
Statistics
Matches: 174, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
99 64 0.37
100 92 0.53
101 18 0.10
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
Found at i:75544091 original size:73 final size:74
Alignment explanation
Indices: 75543993--75544158 Score: 244
Period size: 73 Copynumber: 2.3 Consensus size: 74
75543983 AAAGCAGAAA
* * * * *
75543993 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCTGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
75544058 GTT-AATTT
66 GTTGAATTT
* * *
75544066 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACGTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
75544131 GTTGATTTT
66 GTTGAATTT
75544140 TTGAAAAGCATAAATTGAA
1 TTGAAAAGCATAAATTGAA
75544159 GAAACGGAAA
Statistics
Matches: 83, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
73 60 0.72
74 23 0.28
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGAATTT
Found at i:75551258 original size:16 final size:15
Alignment explanation
Indices: 75551232--75551266 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
75551222 TGATGTGAAT
75551232 AATATAAAATATTAA
1 AATATAAAATATTAA
*
75551247 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
75551263 AATA
1 AATA
75551267 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:75551441 original size:20 final size:20
Alignment explanation
Indices: 75551384--75551443 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
75551374 AATACTACAT
75551384 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
75551403 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
75551426 AAATATGTACATAATATA
1 AAATATGTACATAATATA
75551444 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:75551452 original size:25 final size:25
Alignment explanation
Indices: 75551397--75551631 Score: 121
Period size: 25 Copynumber: 9.5 Consensus size: 25
75551387 TATGTACATA
* * *
75551397 TATAAAAAATAAATACGTGATA-A-
1 TATAAAAAATATATACATAATATAG
* *
75551420 TATTAAAAATATGTACATAATATAG
1 TATAAAAAATATATACATAATATAG
* *
75551445 TGTAAAAAATACATACATAATATA-
1 TATAAAAAATATATACATAATATAG
* *
75551469 -AT-TAAAATATATACATAAGATAACATG
1 TATAAAAAATATATACAT-A-AT-ATA-G
*
75551496 TA-AAAAATATATATAAATAATATAG
1 TATAAAAA-ATATATACATAATATAG
* * *
75551521 TATTAAAGATATATACATAAAATAG
1 TATAAAAAATATATACATAATATAG
* * *
75551546 TATAATATATATATACGTAATATAG
1 TATAAAAAATATATACATAATATAG
* ** * *
75551571 AAT-TTAGA-ATATACCTAATATA-
1 TATAAAAAATATATACATAATATAG
* *
75551593 T-TAAAAGAATATATATATAATATAA
1 TATAAAA-AATATATACATAATATAG
*
75551618 TATTAAGAAATATA
1 TA-TAAAAAATATA
75551632 ATAATAGCAA
Statistics
Matches: 159, Mismatches: 36, Indels: 31
0.70 0.16 0.14
Matches are distributed among these distances:
21 1 0.01
22 13 0.08
23 33 0.21
24 18 0.11
25 63 0.40
26 11 0.07
27 6 0.04
28 5 0.03
29 9 0.06
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
TATAAAAAATATATACATAATATAG
Found at i:75551473 original size:48 final size:49
Alignment explanation
Indices: 75551399--75551631 Score: 156
Period size: 48 Copynumber: 4.7 Consensus size: 49
75551389 TGTACATATA
* * * * *
75551399 TAAAAAATAAATACGTGATA-ATATTAAAAATATGTACATAATATAGTG
1 TAAAAAATATATACATAATATATATTAAAAATATATACATAAAATAGTG
* * *
75551447 TAAAAAATACATACATAATATA-ATT-AAAATATATACATAAGATAACATG
1 TAAAAAATATATACATAATATATATTAAAAATATATACATAAAAT-A-GTG
* * *
75551496 TAAAAAATATATATAAATAATATAGTATTAAAGATATATACATAAAATAGTA
1 T-AAAAA-ATATATACATAATATA-TATTAAAAATATATACATAAAATAGTG
* * * * * * * *
75551548 TAATATATATATACGTAATATAGAATT-TAGA-ATATACCTAATATA-T-
1 TAAAAAATATATACATAATATA-TATTAAAAATATATACATAAAATAGTG
*
75551594 TAAAAGAATATATATATAATATAATATTAAGAAATATA
1 TAAAA-AATATATACATAATAT-ATATTAA-AAATATA
75551632 ATAATAGCAA
Statistics
Matches: 145, Mismatches: 27, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
46 4 0.03
47 33 0.23
48 34 0.23
49 9 0.06
50 26 0.18
51 17 0.12
52 2 0.01
53 4 0.03
54 16 0.11
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (49 bp):
TAAAAAATATATACATAATATATATTAAAAATATATACATAAAATAGTG
Found at i:75551613 original size:24 final size:23
Alignment explanation
Indices: 75551586--75551637 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
75551576 AGAATATACC
*
75551586 TAATATATTA-AAAGAATATATATA
1 TAATATAATATAAAGAA-ATATA-A
*
75551610 TAATATAATATTAAGAAATATAA
1 TAATATAATATAAAGAAATATAA
75551633 TAATA
1 TAATA
75551638 GCAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
TAATATAATATAAAGAAATATAA
Found at i:75552148 original size:12 final size:14
Alignment explanation
Indices: 75552119--75552150 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
75552109 TACAAGGGTG
75552119 GTGGAGTATGGCTA
1 GTGGAGTATGGCTA
75552133 GTGGAGTA-GG-TA
1 GTGGAGTATGGCTA
75552145 GTGGAG
1 GTGGAG
75552151 CAAGTGTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.44
13 2 0.11
14 8 0.44
ACGTcount: A:0.22, C:0.03, G:0.50, T:0.25
Consensus pattern (14 bp):
GTGGAGTATGGCTA
Found at i:75552161 original size:30 final size:30
Alignment explanation
Indices: 75552127--75552208 Score: 146
Period size: 30 Copynumber: 2.7 Consensus size: 30
75552117 TGGTGGAGTA
* *
75552127 TGGCTAGTGGAGTAGGTAGTGGAGCAAGTG
1 TGGCTAGTGGAGTTGGTGGTGGAGCAAGTG
75552157 TGGCTAGTGGAGTTGGTGGTGGAGCAAGTG
1 TGGCTAGTGGAGTTGGTGGTGGAGCAAGTG
75552187 TGGCTAGTGGAGTTGGTGGTGG
1 TGGCTAGTGGAGTTGGTGGTGG
75552209 CAAAGGCTAG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.17, C:0.06, G:0.50, T:0.27
Consensus pattern (30 bp):
TGGCTAGTGGAGTTGGTGGTGGAGCAAGTG
Found at i:75552166 original size:18 final size:18
Alignment explanation
Indices: 75552143--75552198 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
75552133 GTGGAGTAGG
75552143 TAGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
75552161 TAGT-G-G--AGT-TGG-
1 TAGTGGAGCAAGTGTGGC
*
75552173 TGGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
75552191 TAGTGGAG
1 TAGTGGAG
75552199 TTGGTGGTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 3 0.10
13 4 0.13
14 4 0.13
16 4 0.13
17 4 0.13
18 11 0.37
ACGTcount: A:0.20, C:0.07, G:0.48, T:0.25
Consensus pattern (18 bp):
TAGTGGAGCAAGTGTGGC
Found at i:75553037 original size:13 final size:13
Alignment explanation
Indices: 75553019--75553043 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75553009 TTTTCATTAC
75553019 TTTTGAAAAGTGT
1 TTTTGAAAAGTGT
75553032 TTTTGAAAAGTG
1 TTTTGAAAAGTG
75553044 CTGTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (13 bp):
TTTTGAAAAGTGT
Found at i:75553075 original size:39 final size:39
Alignment explanation
Indices: 75553016--75553094 Score: 97
Period size: 39 Copynumber: 2.0 Consensus size: 39
75553006 AGTTTTTCAT
** *
75553016 TACTTTTGAAAAGTGTTTTTGA-AAAGTGCTGTGGAAAAA
1 TACTTTTGAAAAGTACTTTTGAGAAA-TGCTGTAGAAAAA
* *
75553055 TACTTTTGAGAAGTACTTTTGAGAAATGCTTTAGAAAAA
1 TACTTTTGAAAAGTACTTTTGAGAAATGCTGTAGAAAAA
75553094 T
1 T
75553095 TTAAGTGTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
39 31 0.91
40 3 0.09
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (39 bp):
TACTTTTGAAAAGTACTTTTGAGAAATGCTGTAGAAAAA
Found at i:75553086 original size:13 final size:13
Alignment explanation
Indices: 75553052--75553086 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
75553042 TGCTGTGGAA
75553052 AAATACTTTTGAG
1 AAATACTTTTGAG
*
75553065 AAGTACTTTTGAG
1 AAATACTTTTGAG
*
75553078 AAATGCTTT
1 AAATACTTT
75553087 AGAAAAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (13 bp):
AAATACTTTTGAG
Found at i:75554140 original size:24 final size:24
Alignment explanation
Indices: 75554108--75554185 Score: 113
Period size: 24 Copynumber: 3.2 Consensus size: 24
75554098 CCCTCCCAAA
75554108 AAAAAAACTTAACCCAAAAAAAAG
1 AAAAAAACTTAACCCAAAAAAAAG
*
75554132 AAAAAAACTTAACCCCCCAAAAAAAG
1 AAAAAAACTTAA--CCCAAAAAAAAG
*
75554158 -AAAAAACCTAACCCAAAAAAAAG
1 AAAAAAACTTAACCCAAAAAAAAG
75554181 AAAAA
1 AAAAA
75554186 CCTAACCCCC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
23 11 0.23
24 16 0.33
25 10 0.21
26 11 0.23
ACGTcount: A:0.69, C:0.21, G:0.04, T:0.06
Consensus pattern (24 bp):
AAAAAAACTTAACCCAAAAAAAAG
Found at i:75554170 original size:49 final size:46
Alignment explanation
Indices: 75554105--75554204 Score: 146
Period size: 49 Copynumber: 2.1 Consensus size: 46
75554095 AAGCCCTCCC
* *
75554105 AAAAAAAAAACTTAACCCAAAAAAAAGAAAAAAACTTAACCCCCCAAAA
1 AAAAAAAAAACCTAACCCAAAAAAAAG--AAAAACCTAA-CCCCCAAAA
*
75554154 AAAGAAAAAACCTAACCCAAAAAAAAGAAAAACCTAACCCCCAAAA
1 AAAAAAAAAACCTAACCCAAAAAAAAGAAAAACCTAACCCCCAAAA
75554200 AAAAA
1 AAAAA
75554205 CCAAAAAACC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
46 13 0.28
47 9 0.19
49 25 0.53
ACGTcount: A:0.68, C:0.23, G:0.03, T:0.06
Consensus pattern (46 bp):
AAAAAAAAAACCTAACCCAAAAAAAAGAAAAACCTAACCCCCAAAA
Found at i:75554196 original size:24 final size:23
Alignment explanation
Indices: 75554105--75554203 Score: 112
Period size: 24 Copynumber: 4.2 Consensus size: 23
75554095 AAGCCCTCCC
*
75554105 AAAA-AAAAAACTTAACCCAAAA
1 AAAAGAAAAAACCTAACCCAAAA
* *
75554127 AAAAGAAAAAAACTTAACCCCCCAAA
1 AAAAG-AAAAAACCTAA--CCCAAAA
75554153 AAAAGAAAAAACCTAACCCAAAA
1 AAAAGAAAAAACCTAACCCAAAA
75554176 AAAAG-AAAAACCTAACCCCCAAAA
1 AAAAGAAAAAACCTAA--CCCAAAA
75554200 AAAA
1 AAAA
75554204 ACCAAAAAAC
Statistics
Matches: 68, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
22 14 0.21
23 11 0.16
24 22 0.32
25 10 0.15
26 11 0.16
ACGTcount: A:0.68, C:0.23, G:0.03, T:0.06
Consensus pattern (23 bp):
AAAAGAAAAAACCTAACCCAAAA
Found at i:75556749 original size:12 final size:12
Alignment explanation
Indices: 75556732--75556767 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
75556722 ATTCATTTGA
75556732 CATTCATGCATT
1 CATTCATGCATT
*
75556744 CATTCATGCATC
1 CATTCATGCATT
*
75556756 CATTCATTCATT
1 CATTCATGCATT
75556768 GCATATCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:75556761 original size:16 final size:17
Alignment explanation
Indices: 75556740--75556771 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
75556730 GACATTCATG
75556740 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
75556756 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
75556772 ATCCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:75565110 original size:70 final size:67
Alignment explanation
Indices: 75565036--75565207 Score: 222
Period size: 70 Copynumber: 2.5 Consensus size: 67
75565026 CTTTTCAAGG
*
75565036 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTG
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTA-TTTTAATTTT-
*
75565101 TTTT
64 TGTT
* *
75565105 CAAAATCAACTCATATTGCGAGA-AGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTAATTTT
1 -AAAATCAACTCATATTGCGAGAGA-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTAATTTT
75565169 TGTT
64 TGTT
** * *
75565173 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCT
75565208 TTTAATTTCT
Statistics
Matches: 92, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
66 30 0.33
68 3 0.03
69 11 0.12
70 48 0.52
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (67 bp):
AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTAATTTTTG
TT
Found at i:75565294 original size:13 final size:13
Alignment explanation
Indices: 75565276--75565300 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75565266 CACGCTGAGG
75565276 TATTTTCAATTTC
1 TATTTTCAATTTC
75565289 TATTTTCAATTT
1 TATTTTCAATTT
75565301 ATGTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTCAATTTC
Found at i:75565435 original size:139 final size:139
Alignment explanation
Indices: 75565179--75565436 Score: 414
Period size: 138 Copynumber: 1.9 Consensus size: 139
75565169 TGTTAAATTG
* *
75565179 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTACTTTTTCAAAATCAGCTCATATTGC
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTACTTTTTAAAAATCAACTCATATTGC
* *
75565244 GAGAGGTGAGTTGAGCCCAGGTCACGCTGAGGTATTTTCAATTTCTATTTTCAATTTATGTTGTT
66 GAGAGGTGAGTTGAGCCCAGGACACGCTGAGGTAATTTCAATTTCTATTTTCAATTTATGTTGTT
75565309 CAAGAATCA
131 CAAGAATCA
*
75565318 ACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTAC-TTTTAAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTTCTACTTTTTAAAAATCAACTCATATTG
*
75565381 -GAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAA
65 CGAGAGGTGAGTTGAGCC-CAGGACACGCTGAGGTAATTTCAATTTCTAT-TTTCAA
75565437 AAAAAATCAA
Statistics
Matches: 110, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
137 17 0.15
138 48 0.44
139 43 0.39
140 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (139 bp):
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTACTTTTTAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCCAGGACACGCTGAGGTAATTTCAATTTCTATTTTCAATTTATGTTGTT
CAAGAATCA
Found at i:75565572 original size:88 final size:89
Alignment explanation
Indices: 75565417--75565590 Score: 237
Period size: 88 Copynumber: 2.0 Consensus size: 89
75565407 GCTGAGGTAA
* * *
75565417 TTTCAATTTCTGTCTTTCAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAG--A
*
75565482 CACGCCGAGGT-ATTTCAATTTCGTT
64 CACACCGAGGTAATTTCAATTTCGTT
** *
75565507 TTTCAATTTCTG-CTTTC-AAAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACA
*
75565570 CACTGAGGTAATTTCAATTTC
66 CACCGAGGTAATTTCAATTTC
75565591 TGTTGTCAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
86 10 0.13
87 11 0.15
88 37 0.49
89 5 0.07
90 12 0.16
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (89 bp):
TTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACA
CACCGAGGTAATTTCAATTTCGTT
Found at i:75565646 original size:74 final size:75
Alignment explanation
Indices: 75565507--75566321 Score: 500
Period size: 75 Copynumber: 10.7 Consensus size: 75
75565497 CAATTTCGTT
** *
75565507 TTTCAATTTCTGCTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACA
1 TTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACACA
*
75565572 -CTGAGGTAA
66 CCCGAGGTAA
* * * * *
75565581 TTTCAATTTCTG-TTGTCAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTTAGGTCAC
1 TTTCAATTTCTGCTT-TCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACAC
*
75565645 ACGCCGAGGTAT
65 AC-CCGAGGTAA
* * *** * *
75565657 TTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAA--AA-TCAACTCATATTGCGAGAGGTGA
1 TTTCAATTTCTG-CTTTCAA------------AAAAATCAACTC-A-T-ATTGCGAGAG--GCGA
* * * *
75565719 GTGGAGCCTCAGGACAC-GCTGAGGTAA
48 GTTGAGCCTCAAGACACACCCGAGGTAA
* ***
75565746 TTTCAATTTCTG-TTGTAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
1 TTTCAATTTCTGCTT-T---CAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGA
*** * *
75565810 -AGTGCTGAGGTAT
62 CACACCCGAGGTAA
* * **
75565823 TTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
1 TTTCAATTTCTG-CTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACAC
* *
75565888 -GCTGAGGTAA
65 ACCCGAGGTAA
* ** * * *
75565898 TTTCGATTTCTG-TTT-TTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC-
1 TTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACACA
* *
75565960 GCTGAGGTAA
66 CCCGAGGTAA
* ***
75565970 TTTCAATTTCTG-TTGTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTCAATTTCTGCTT-T-CAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACA
** * *
75566034 -TGCTGAGGTAT
64 CACCCGAGGTAA
* * ** *
75566045 TTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGATA-
1 TTTCAATTTCTG-CTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACAC
** *
75566109 TGCTGAGGTAA
65 ACCCGAGGTAA
* * ***
75566120 TTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC-
1 TTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACACA
*** *
75566182 GTTGAGGTAT
66 CCCGAGGTAA
* * * * *
75566192 TTTCAATTTCTGTTTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCAC
1 TTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAG-ACAC
* * *
75566255 ATGCTGAGGTAT
65 A-CCCGAGGTAA
* *
75566267 TTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTCAATTTCT-GCTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGC
75566322 TTCAGATCAC
Statistics
Matches: 609, Mismatches: 86, Indels: 89
0.78 0.11 0.11
Matches are distributed among these distances:
72 130 0.21
73 43 0.07
74 58 0.10
75 201 0.33
76 25 0.04
77 76 0.12
78 3 0.00
79 12 0.02
80 1 0.00
81 3 0.00
82 2 0.00
86 2 0.00
87 4 0.01
88 2 0.00
89 28 0.05
91 19 0.03
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (75 bp):
TTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAAGACACA
CCCGAGGTAA
Found at i:75565875 original size:75 final size:74
Alignment explanation
Indices: 75565670--75566326 Score: 833
Period size: 75 Copynumber: 8.8 Consensus size: 74
75565660 CAATTTCCGT
* *
75565670 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACA
1 TTTTCAATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
75565735 CGCTGAGGTA
65 TGCTGAGGTA
* ** ** *
75565745 ATTTCAATTTCTGTTGTAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
1 TTTTCAATTTCTGTT-T--TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
75565810 -AGTGCTGAGGTA
63 CA-TGCTGAGGTA
* *
75565822 TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
75565887 CGCTGAGGTA
65 TGCTGAGGTA
* * * * *
75565897 ATTTCGATTTCTGTTTT--TAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAT
75565960 GCTGAGGTA
66 GCTGAGGTA
* ** ** *
75565969 ATTTCAATTTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
75566034 TGCTGAGGTA
65 TGCTGAGGTA
* * *
75566044 TTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGATA
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
75566109 TGCTGAGGTA
65 TGCTGAGGTA
* * ** * *
75566119 ATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAT
*
75566182 GTTGAGGTA
66 GCTGAGGTA
*
75566191 TTTTCAATTTCTGTTTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCA
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---A
75566254 CATGCTGAGGTA
63 CATGCTGAGGTA
* *
75566266 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
75566327 ATCACACACT
Statistics
Matches: 503, Mismatches: 62, Indels: 31
0.84 0.10 0.05
Matches are distributed among these distances:
72 130 0.26
73 35 0.07
74 8 0.02
75 222 0.44
76 7 0.01
77 99 0.20
78 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAT
GCTGAGGTA
Found at i:75566010 original size:147 final size:148
Alignment explanation
Indices: 75565671--75566321 Score: 857
Period size: 147 Copynumber: 4.4 Consensus size: 148
75565661 AATTTCCGTT
* * *
75565671 TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACAC
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
** **
75565736 GCTGAGGTAATTTCAATTTCTGTTGTAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGA
66 GCTGAGGTAATTTCAATTTCTGTT-T---TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
75565801 GCCTCAAGA-AGTGCTGAGGTAT
127 GCCTCAGGACA-TGCTGAGGTAA
* **
75565823 TTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
* * *
75565888 GCTGAGGTAATTTCGATTTCTGTTTT-TAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCT
66 GCTGAGGTAATTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
75565952 CAGGACACGCTGAGGTAA
131 CAGGACATGCTGAGGTAA
** **
75565970 TTTCAATTTCTGT-TGTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 TTTCAATTTCTGTCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
* * *
75566034 TGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
65 CGCTGAGGTAATTTCAATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
75566099 CCTCGGGATATGCTGAGGTAA
128 CCTCAGGACATGCTGAGGTAA
* **
75566120 TTTCAATTTCTGT-TTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
* * *
75566182 GTTGAGGTATTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT
66 GCTGAGGTAATTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
75566247 C-GGTTCACATGCTGAGGTAT
131 CAGG---ACATGCTGAGGTAA
*
75566267 TTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
75566322 TTCAGATCAC
Statistics
Matches: 446, Mismatches: 42, Indels: 24
0.87 0.08 0.05
Matches are distributed among these distances:
144 2 0.00
145 38 0.09
146 5 0.01
147 210 0.47
148 8 0.02
149 1 0.00
150 97 0.22
151 1 0.00
152 84 0.19
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (148 bp):
TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
GCTGAGGTAATTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CAGGACATGCTGAGGTAA
Found at i:75566084 original size:222 final size:222
Alignment explanation
Indices: 75565671--75566321 Score: 1013
Period size: 222 Copynumber: 2.9 Consensus size: 222
75565661 AATTTCCGTT
* * *
75565671 TTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTGGAGCCTCAGGACAC
1 TTTCAATTTCTG-TTTTC--AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
75565736 GCTGAGGTAATTTCAATTTCTGTTGTAAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGA
63 GCTGAGGTAATTTCAATTTCTGTTGT--AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGA
75565801 GCCTCAAGA-AGTGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAG
126 GCCTCAAGACA-TGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAG
75565865 AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
190 AGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
* *
75565898 TTTCGATTTCTGTTTTTAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
75565963 GAGGTAATTTCAATTTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
66 GAGGTAATTTCAATTTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
75566028 AAGACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
131 AAGACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
* *
75566093 GTTGAGCCTCGGGATATGCTGAGGTAA
196 GTTGAGCCTCGGGACACGCTGAGGTAA
** * *
75566120 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
1 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* ** * **
75566185 GAGGTATTTTCAATTTCTGTT-T-TCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC
66 GAGGTAATTTCAATTTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
* * *
75566248 -GGTTCACATGCTGAGGTATTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGG
131 AAG---ACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGG
75566312 TGAGTTGAGC
193 TGAGTTGAGC
75566322 TTCAGATCAC
Statistics
Matches: 398, Mismatches: 22, Indels: 13
0.92 0.05 0.03
Matches are distributed among these distances:
219 1 0.00
220 36 0.09
221 1 0.00
222 276 0.69
223 1 0.00
224 69 0.17
226 3 0.01
227 11 0.03
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (222 bp):
TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTAATTTCAATTTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
AAGACATGCTGAGGTATTTTCAATTTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
GTTGAGCCTCGGGACACGCTGAGGTAA
Found at i:75567230 original size:27 final size:25
Alignment explanation
Indices: 75567191--75567283 Score: 152
Period size: 26 Copynumber: 3.6 Consensus size: 25
75567181 AGCCCTCCCC
75567191 AAAAAAAACCTAACCCAAAAAAGAAA
1 AAAAAAAACCTAACCCAAAAAA-AAA
75567217 AGAAAAAAACCTAACCC-AAAAAAAA
1 A-AAAAAAACCTAACCCAAAAAAAAA
75567242 AAAAAAAACCTAACCCAAAAAAAAA
1 AAAAAAAACCTAACCCAAAAAAAAA
75567267 AAAGAAAAACCTAACCC
1 AAA-AAAAACCTAACCC
75567284 CCCTAAAAAA
Statistics
Matches: 64, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
24 15 0.23
25 15 0.23
26 19 0.30
27 15 0.23
ACGTcount: A:0.71, C:0.22, G:0.03, T:0.04
Consensus pattern (25 bp):
AAAAAAAACCTAACCCAAAAAAAAA
Found at i:75567844 original size:2 final size:2
Alignment explanation
Indices: 75567839--75567871 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
75567829 TAAATACTAT
*
75567839 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
75567872 TTTAAATACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:75572738 original size:3 final size:3
Alignment explanation
Indices: 75572730--75572765 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
75572720 GAAGTGTGTA
75572730 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
75572766 TAACAATCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:75573431 original size:2 final size:2
Alignment explanation
Indices: 75573424--75573458 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
75573414 ATTATGTAAA
75573424 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
75573459 AAATAAGAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:75577859 original size:63 final size:63
Alignment explanation
Indices: 75577747--75577866 Score: 188
Period size: 63 Copynumber: 1.9 Consensus size: 63
75577737 TTGAACTTTG
* * *
75577747 TTATTGTTAGTCTTTTCTCTACCATGATGATCAAGAAGTGGAAATTATGGATTGGAGGCTAGT
1 TTATTGTTAGTCCTTTCTCTACCATGATGATCAAGAAGTGAAAACTATGGATTGGAGGCTAGT
*
75577810 TTATTGTTAGTCCTTTCTCTACCATGATTATCAATG-AGTGAAAACTATGGATTGGAG
1 TTATTGTTAGTCCTTTCTCTACCATGATGATCAA-GAAGTGAAAACTATGGATTGGAG
75577867 ACTAATTTGT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
63 51 0.98
64 1 0.02
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.38
Consensus pattern (63 bp):
TTATTGTTAGTCCTTTCTCTACCATGATGATCAAGAAGTGAAAACTATGGATTGGAGGCTAGT
Found at i:75580091 original size:2 final size:2
Alignment explanation
Indices: 75580084--75580112 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
75580074 TTGAAAAGAA
75580084 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75580113 TATTTTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:75581459 original size:2 final size:2
Alignment explanation
Indices: 75581452--75581502 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
75581442 TTTACCTTTT
75581452 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
75581494 TA TA TA TA T
1 TA TA TA TA T
75581503 CACGATTTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:75581573 original size:2 final size:2
Alignment explanation
Indices: 75581568--75581595 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
75581558 ATCTATATAC
75581568 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
75581596 ATATATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:75581600 original size:2 final size:2
Alignment explanation
Indices: 75581595--75581622 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
75581585 TCTCTCTCTC
75581595 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
75581623 AAGGTGGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:75587139 original size:4 final size:4
Alignment explanation
Indices: 75587132--75587165 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
75587122 ATCGCAATGA
* *
75587132 ATGT ATGT ATAT ATGT ATAT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
75587166 TATTATTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:75587184 original size:14 final size:14
Alignment explanation
Indices: 75587165--75587193 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
75587155 TATGTATGTA
75587165 TTATTATTATTTTT
1 TTATTATTATTTTT
75587179 TTATTATTATTTTT
1 TTATTATTATTTTT
75587193 T
1 T
75587194 AAGAACAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTATTATTATTTTT
Found at i:75596065 original size:18 final size:18
Alignment explanation
Indices: 75596039--75596073 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75596029 TTGAGGTAGA
*
75596039 GATGAAGATGAAGATGAT
1 GATGAAGATGAACATGAT
*
75596057 GATGGAGATGAACATGA
1 GATGAAGATGAACATGA
75596074 GTACAAGAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.34, T:0.20
Consensus pattern (18 bp):
GATGAAGATGAACATGAT
Found at i:75599833 original size:51 final size:51
Alignment explanation
Indices: 75599709--75600003 Score: 388
Period size: 51 Copynumber: 5.9 Consensus size: 51
75599699 TAGCCAAAGC
* * * *
75599709 TATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGTGA-CCAA-T
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
** * *
75599758 TATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
75599809 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
*
75599860 TATCGGGTACGCATAGTAGCCTACACTTAGTACTACACACGTGATCGAAGT
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* * *
75599911 TATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-T
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAAGT
* *
75599960 AATTC-GGTAC-AAGTAGTAGCCTGCACTTAGTACTACACACGTGA
1 TA-TCGGGTACGCA-TAGTAGCCTGCACTTAGTACTACACACGTGA
75600004 CCTCACAATA
Statistics
Matches: 221, Mismatches: 18, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
48 1 0.00
49 73 0.33
50 10 0.05
51 137 0.62
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (51 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:75602734 original size:46 final size:43
Alignment explanation
Indices: 75602674--75602894 Score: 185
Period size: 46 Copynumber: 4.8 Consensus size: 43
75602664 GAGCTATTGT
* *
75602674 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGTGA-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-G--AC-TTGAGAC
* * *
75602720 GAGCCAGTGTAAGACCATCTCTGGTACATGGCATCGGCATTGAGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-TTGAGAC
* *
75602766 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGACTTCAAGAC
1 GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGACTT-GAGAC
* * *
75602812 GTAAGCCAGTGTAAGACATGTCTGGGACATTCATCAACTACGAGA-
1 G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGACT-TGAGAC
* *
75602857 GTGTCAGTGTAAGACCATGTCTGGGACATTGCATCGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGAC
75602895 ACAGATATGC
Statistics
Matches: 145, Mismatches: 19, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
43 11 0.08
44 13 0.09
45 17 0.12
46 62 0.43
47 25 0.17
48 17 0.12
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (43 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTTGAGAC
Found at i:75602935 original size:140 final size:139
Alignment explanation
Indices: 75602679--75602941 Score: 305
Period size: 140 Copynumber: 1.9 Consensus size: 139
75602669 ATTGTGAGCT
* *
75602679 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGTGAGAGCCAGTGTAAGACCATCTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAACCAC--TGAGAGAGCCAGTGTAAGACCATCTCTGG
* * ** * * *
75602744 TACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGACTTCA
64 GACATGGCATCGACACAGAGACGAGAGCTAGTGTAAGACATGTATGAGACATGGCATCGACTTCA
75602808 AGACGTAAGCC
129 AGACGTAAGCC
* * * * *
75602819 AGTGTAAGACATGTCTGGGACATTCATCAACTAC-GAGAGTGTCAGTGTAAGACCATGTCTGGGA
1 AGTGTAAGACATGTCTGGGACATGCATCAACCACTGAGAGAGCCAGTGTAAGACCATCTCTGGGA
* * * *
75602883 CATTGCATCGACACAGATATGCTAGAGCTTGTGTAAGACCATGTATGAGACATGGCATC
66 CATGGCATCGACACAGAGA--CGAGAGCTAGTGTAAGA-CATGTATGAGACATGGCATC
75602942 AGCACCTGGA
Statistics
Matches: 101, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
137 39 0.39
139 14 0.14
140 43 0.43
141 5 0.05
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (139 bp):
AGTGTAAGACATGTCTGGGACATGCATCAACCACTGAGAGAGCCAGTGTAAGACCATCTCTGGGA
CATGGCATCGACACAGAGACGAGAGCTAGTGTAAGACATGTATGAGACATGGCATCGACTTCAAG
ACGTAAGCC
Found at i:75608067 original size:40 final size:39
Alignment explanation
Indices: 75608021--75608162 Score: 144
Period size: 40 Copynumber: 3.6 Consensus size: 39
75608011 TACTCACTCA
* * *
75608021 AATGCCTTCGGGACATGGCCCGGTTAGAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* *
75608060 AATTGCCTTCGGGACTTAGCCCAGATT-TAGTAATTCGCAC
1 AA-TGCCTTCGGGACTTAGCCC-GGTTATAGTAACTCGCAC
* * * *
75608100 AAATGCCTTCGGGACGT-GGCCGGATATAGTAGCTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
*
75608139 GAATGCATTCGGGACTTAGCCCGG
1 -AATGCCTTCGGGACTTAGCCCGG
75608163 AATTAGCCAC
Statistics
Matches: 83, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.36
40 46 0.55
41 5 0.06
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
Found at i:75608182 original size:79 final size:80
Alignment explanation
Indices: 75608017--75608193 Score: 207
Period size: 79 Copynumber: 2.2 Consensus size: 80
75608007 TAGCTACTCA
* *
75608017 CTCAAATGCCTTCGGGACATGGCCCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTAGCCC
1 CTCAAATGCCTTCGGGACATGGCCCGGATAGAGTAACTCGCACAATTGCATTCGGGACTTAGCCC
* * * *
75608082 AGATTTAGTAATTCG
66 AGAATTAGCAACTAG
* * * *
75608097 CACAAATGCCTTCGGGACGTGG-CCGGATATAGTAGCTCGCACGAA-TGCATTCGGGACTTAGCC
1 CTCAAATGCCTTCGGGACATGGCCCGGATAGAGTAACTCGCAC-AATTGCATTCGGGACTTAGCC
* *
75608160 CGGAATTAGCCACTAG
65 CAGAATTAGCAACTAG
75608176 CTCAAATG-CTCTCGGGAC
1 CTCAAATGCCT-TCGGGAC
75608194 TTAGCTGGTT
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 2 0.02
79 58 0.71
80 22 0.27
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.23
Consensus pattern (80 bp):
CTCAAATGCCTTCGGGACATGGCCCGGATAGAGTAACTCGCACAATTGCATTCGGGACTTAGCCC
AGAATTAGCAACTAG
Found at i:75616203 original size:40 final size:40
Alignment explanation
Indices: 75616136--75616379 Score: 262
Period size: 40 Copynumber: 6.1 Consensus size: 40
75616126 CGGAATTTAA
* *
75616136 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
75616176 CCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
75616216 CCGGATTTAGTAATTCGTACAAATGCCTTCGGGACGT-GC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75616255 CCGGATATAGTAACTTGCACAAAGGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
75616295 CCGGGATATAGTAGCTCGCACGAATGCATTCGGGACTTAGC
1 CC-GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** * *
75616336 CCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGACTTAGC
75616376 CCGG
1 CCGG
75616380 TTATCATCCA
Statistics
Matches: 169, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
39 36 0.21
40 98 0.58
41 35 0.21
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75622449 original size:39 final size:39
Alignment explanation
Indices: 75622363--75622485 Score: 149
Period size: 39 Copynumber: 3.1 Consensus size: 39
75622353 CAAATCCAAT
* * * *
75622363 CACCACCACAAAGCATGCAGGACTTTAAGCCTGGATATAA
1 CACCAGCACAAAGCCTGCGGGACTTT-AGCCCGGATATAA
* *
75622403 TACCAGCACAAAGCCTGCGGGACTTTACCCCGGATATAA
1 CACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
* *
75622442 CACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAA
1 CACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAA
75622481 CACCA
1 CACCA
75622486 TTATAAAGTC
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
39 38 0.53
40 34 0.47
ACGTcount: A:0.33, C:0.31, G:0.20, T:0.17
Consensus pattern (39 bp):
CACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAA
Found at i:75622629 original size:28 final size:28
Alignment explanation
Indices: 75622558--75622639 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
75622548 ATTTAATCAT
* * *
75622558 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACATTAAGTGCCATTC
* *
75622586 TCAATATCTCACACATTAAGTGCCATTC
1 TCAATATTTCGCACATTAAGTGCCATTC
* * *
75622614 TCAATATTTCGTACATTGAGTACCAT
1 TCAATATTTCGCACATTAAGTGCCAT
75622640 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (28 bp):
TCAATATTTCGCACATTAAGTGCCATTC
Found at i:75638166 original size:46 final size:46
Alignment explanation
Indices: 75638070--75638196 Score: 123
Period size: 46 Copynumber: 2.7 Consensus size: 46
75638060 CATCTCGTAG
* * * * *
75638070 CCGATGCATGTCCCAGACATATTTTACACTGGCTTATGTCCTGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCCTATGTCCTAAGA
*
75638116 CCGATGCATGTCCCAGACATGTCTTACACTGGCACT-TGT-CTCAATA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-CTATGTCCT-AAGA
* * *
75638162 CCGATGATATATCCTAGACATGGTCTTACACTGGC
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGC
75638197 TCTCATAATG
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
45 2 0.03
46 41 0.60
47 12 0.18
48 13 0.19
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCCTATGTCCTAAGA
Found at i:75640063 original size:40 final size:40
Alignment explanation
Indices: 75640003--75640166 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
75639993 CGGGATTTAA
* ** *
75640003 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* ***
75640043 CCGGATTTGGTAACTCGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
*
75640083 CCGGATATAACAACTCACACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
75640123 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
75640163 CCGG
1 CCGG
75640167 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 99 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:75647069 original size:40 final size:40
Alignment explanation
Indices: 75647024--75647191 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
75647014 CGGAATACAA
75647024 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
75647064 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
75647104 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
75647144 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
75647184 CCGGATAT
1 CCGGATAT
75647192 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:75647164 original size:80 final size:80
Alignment explanation
Indices: 75647024--75647191 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
75647014 CGGAATACAA
* *
75647024 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
75647089 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
75647104 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
75647167 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
75647184 CCGGATAT
1 CCGGATAT
75647192 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:75654002 original size:40 final size:40
Alignment explanation
Indices: 75653957--75654124 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
75653947 CGGAATACAA
75653957 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
75653997 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
75654037 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
75654077 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
75654117 CCGGATAT
1 CCGGATAT
75654125 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:75654097 original size:80 final size:80
Alignment explanation
Indices: 75653957--75654124 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
75653947 CGGAATACAA
* *
75653957 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
75654022 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
75654037 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
75654100 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
75654117 CCGGATAT
1 CCGGATAT
75654125 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:75661991 original size:40 final size:40
Alignment explanation
Indices: 75661946--75662113 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
75661936 CGGAATACAA
75661946 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
75661986 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
75662026 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
75662066 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
75662106 CCGGATAT
1 CCGGATAT
75662114 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:75662086 original size:80 final size:80
Alignment explanation
Indices: 75661946--75662113 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
75661936 CGGAATACAA
* *
75661946 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
75662011 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
75662026 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
75662089 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
75662106 CCGGATAT
1 CCGGATAT
75662114 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:75671165 original size:40 final size:40
Alignment explanation
Indices: 75671105--75671268 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
75671095 CGGGATTTAA
* ** *
75671105 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* ***
75671145 CCGGATTTGGTAACTCGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
75671185 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
75671225 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
75671265 CCGG
1 CCGG
75671269 GTATCATTCA
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 2 0.02
40 101 0.95
41 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:75671252 original size:80 final size:80
Alignment explanation
Indices: 75671091--75671268 Score: 207
Period size: 80 Copynumber: 2.2 Consensus size: 80
75671081 GAATCACGTA
* * * * **
75671091 CCTTCGGGATTTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGG
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
* *
75671155 TAACTCGCACAATTG
66 TAACTAGCACAAATG
* ** *
75671170 CCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATA
* *
75671234 ATCACTAGCATAAATG
65 ATAACTAGCACAAATG
75671250 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
75671269 GTATCATTCA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 11 0.13
80 69 0.84
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAA
TAACTAGCACAAATG
Found at i:75689801 original size:47 final size:46
Alignment explanation
Indices: 75689733--75690000 Score: 194
Period size: 46 Copynumber: 5.7 Consensus size: 46
75689723 GGGCTATTGT
* * *
75689733 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACACTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAGACTATGA
* *
75689779 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGG-CATTGA-GATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--GACTATGA
* *
75689827 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACT-T-A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-C-AGACTATGA
* * *
75689874 -AGCCAGTGTAAGACATGTCTGGGACATGCATC-GAC-TACGA-GA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAGACTATGA
* * * * *
75689916 GTGTCAGTGTAAGACCATGTATGGGACATGGCATCGACACAGA-TATTCTA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CAGACTA-T-GA
**
75689966 GAGCTTGTGTAAGACCATGTCTGGGACATAGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
75690001 AGCACCTGTA
Statistics
Matches: 174, Mismatches: 28, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
41 2 0.01
42 1 0.01
43 12 0.07
44 13 0.07
45 6 0.03
46 49 0.28
47 33 0.19
48 25 0.14
49 2 0.01
50 31 0.18
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAGACTATGA
Found at i:75689990 original size:140 final size:140
Alignment explanation
Indices: 75689738--75690000 Score: 336
Period size: 137 Copynumber: 1.9 Consensus size: 140
75689728 ATTGTGAGCT
* *
75689738 AGTGTAAGACATGTCTGGGACATGCATTGGCCACACTATGAGAGCCAATGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATT-GCCACACGATGAGAGCCAATGTAAGACCATGTATGG
* ** *
75689803 GACATGGCATCGGCATTGAGATGAGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG
65 GACATGGCATCGACACAGAGATGAGAGCTAGTGTAAGACATGTCTGGGACATAGCATCGGCCTCG
75689867 AGACTTAAGCC
130 AGACTTAAGCC
* * * *
75689878 AGTGTAAGACATGTCTGGGACATGCA-T-CGACTACGA-GAGTGTCAGTGTAAGACCATGTATGG
1 AGTGTAAGACATGTCTGGGACATGCATTGCCAC-ACGATGAGAGCCAATGTAAGACCATGTATGG
* * *
75689940 GACATGGCATCGACACAGATATTCTAGAGCTTGTGTAAGACCATGTCTGGGACATAGCATC
65 GACATGGCATCGACACAGAGA-T-GAGAGCTAGTGTAAGA-CATGTCTGGGACATAGCATC
75690001 AGCACCTGTA
Statistics
Matches: 105, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
137 42 0.40
138 4 0.04
139 14 0.13
140 40 0.38
141 5 0.05
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATTGCCACACGATGAGAGCCAATGTAAGACCATGTATGGG
ACATGGCATCGACACAGAGATGAGAGCTAGTGTAAGACATGTCTGGGACATAGCATCGGCCTCGA
GACTTAAGCC
Found at i:75694218 original size:50 final size:50
Alignment explanation
Indices: 75694153--75694445 Score: 358
Period size: 50 Copynumber: 5.8 Consensus size: 50
75694143 ACCGAAGTTC
* **
75694153 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
75694203 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** * * * * *
75694253 TCTAATACACGTAGTAGCCTGCATTTAGTACTACACATGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* *
75694304 TCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
75694354 TCTGGTACACGTAGTAG-CTGCACTTAGTACTACACACGTGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
75694402 T-TGCCTTAAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TCTG--GT--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
75694446 TTCTCACAAT
Statistics
Matches: 209, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
47 2 0.01
48 3 0.01
49 28 0.13
50 104 0.50
51 51 0.24
52 21 0.10
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:75694455 original size:101 final size:100
Alignment explanation
Indices: 75694153--75694445 Score: 349
Period size: 101 Copynumber: 2.9 Consensus size: 100
75694143 ACCGAAGTTC
* * ** * *
75694153 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCTG-GTACACGTAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-AATATGCGTACACATAG
*
75694217 TAGCCTGCACTTAGTACTACACATGTGACCTAACCA
65 TAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** * * * ** *
75694253 TCTAATACACGTAGTAGCCTGCATTTAGTACTACACATGTGATCGAAGCTATCGGGTACACATAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAATAT-GCGTACACATAG
*
75694318 TAGCCTGCACTTAGTACTACACATGCGACCTAACAA
65 TAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
75694354 TCTGGTACACGTAGTAG-CTGCACTTAGTACTACACACGTGACCTAAAAT-TGCCTTAAACACAT
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAATATG-CGT--ACACAT
*
75694417 AGTAGCCTGCACATAGTACTACACATGTG
63 AGTAGCCTGCACTTAGTACTACACATGTG
75694446 TTCTCACAAT
Statistics
Matches: 161, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
98 1 0.01
99 4 0.02
100 65 0.40
101 91 0.57
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (100 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAATATGCGTACACATAGT
AGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:75696411 original size:40 final size:40
Alignment explanation
Indices: 75696284--75696413 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
75696274 ATGCTGGAAA
* *
75696284 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
75696324 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
75696364 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
75696404 TTATATCCGG
1 TTATATCCGG
75696414 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:75701167 original size:14 final size:15
Alignment explanation
Indices: 75701141--75701171 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
75701131 TATTAAGTTG
75701141 ATTTTGTTTTTCAAA
1 ATTTTGTTTTTCAAA
75701156 ATTTTG-TTTTCAAA
1 ATTTTGTTTTTCAAA
75701170 AT
1 AT
75701172 AAATTACTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (15 bp):
ATTTTGTTTTTCAAA
Found at i:75707295 original size:22 final size:22
Alignment explanation
Indices: 75707270--75707330 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 22
75707260 GGACAAGCCA
* * *
75707270 CCACTGATTTGCAGTTAAATTT
1 CCACTGATTTGCAGATAAACTG
* *
75707292 CCACTAATTTGTAGATAAACTG
1 CCACTGATTTGCAGATAAACTG
*
75707314 CCATTGATTTGCAGATA
1 CCACTGATTTGCAGATA
75707331 TACTATCACT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (22 bp):
CCACTGATTTGCAGATAAACTG
Found at i:75708453 original size:15 final size:16
Alignment explanation
Indices: 75708433--75708465 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
75708423 TAGTTCGGCT
75708433 AAGGAG-AGGGGAAGA
1 AAGGAGTAGGGGAAGA
*
75708448 AAGGAGTAGGTGAAGA
1 AAGGAGTAGGGGAAGA
75708464 AA
1 AA
75708466 ATAAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.48, C:0.00, G:0.45, T:0.06
Consensus pattern (16 bp):
AAGGAGTAGGGGAAGA
Found at i:75709862 original size:45 final size:45
Alignment explanation
Indices: 75709802--75709891 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
75709792 AAATGGTTAT
*
75709802 TAATCCATTTTTCTTTATGTTAATAGTGGGTAATGATGATGATGG
1 TAATCCATTTTTCTTTATGTTAATAGTAGGTAATGATGATGATGG
75709847 TAATCCATTTTTCTTTATGTTAATAGTAGGTAATGATGATGATGG
1 TAATCCATTTTTCTTTATGTTAATAGTAGGTAATGATGATGATGG
75709892 CCATTAAATG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (45 bp):
TAATCCATTTTTCTTTATGTTAATAGTAGGTAATGATGATGATGG
Found at i:75712289 original size:92 final size:93
Alignment explanation
Indices: 75712178--75712347 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
75712168 GCCCATAAGT
* *
75712178 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75712243 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
75712271 GAACTC-GACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75712335 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75712348 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 68 0.92
93 6 0.08
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75712363 original size:46 final size:46
Alignment explanation
Indices: 75712170--75712349 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
75712160 TGTAACCCGC
* * *
75712170 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
75712216 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
75712266 -C-TCA-CGAACTC-GACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
75712308 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
75712350 AACCATCCTA
Statistics
Matches: 114, Mismatches: 12, Indels: 16
0.80 0.08 0.11
Matches are distributed among these distances:
42 3 0.03
43 1 0.01
44 2 0.02
45 9 0.08
46 85 0.75
47 8 0.07
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:75713846 original size:43 final size:43
Alignment explanation
Indices: 75713799--75713880 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
75713789 GATGTACAAT
* *
75713799 GTATGCCAGTATATTTGCTTCAATTCATCTGATTATGCATTGC
1 GTATGCCAATATATTTGCTTCAATTCATCTGATGATGCATTGC
* * *
75713842 GTATGCCAATATATTTGTTTCGATTTATCTGATGATGCA
1 GTATGCCAATATATTTGCTTCAATTCATCTGATGATGCA
75713881 CGTAGGTGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.24, C:0.16, G:0.17, T:0.43
Consensus pattern (43 bp):
GTATGCCAATATATTTGCTTCAATTCATCTGATGATGCATTGC
Found at i:75716185 original size:39 final size:39
Alignment explanation
Indices: 75716127--75716215 Score: 133
Period size: 39 Copynumber: 2.3 Consensus size: 39
75716117 GAAATGGTAT
** *
75716127 AACTACTCCTATTTGCCCTCTACTTCCTATAATATAGAA
1 AACTACTCCTATTCACCCTCTACTTCCTATAATATAAAA
*
75716166 AACTACTCTTATTCACCCTCTACTTCCTATAATATAAAA
1 AACTACTCCTATTCACCCTCTACTTCCTATAATATAAAA
*
75716205 AATTACTCCTA
1 AACTACTCCTA
75716216 AAATAAATTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.34, C:0.28, G:0.02, T:0.36
Consensus pattern (39 bp):
AACTACTCCTATTCACCCTCTACTTCCTATAATATAAAA
Found at i:75719568 original size:17 final size:16
Alignment explanation
Indices: 75719547--75719581 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
75719537 TGTTTTTTTT
75719547 ATTTTT-TTTAAGACCA
1 ATTTTTGTTT-AGACCA
75719563 ATTTTTGTTTAGACCA
1 ATTTTTGTTTAGACCA
75719579 ATT
1 ATT
75719582 ACAAATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.29, C:0.11, G:0.09, T:0.51
Consensus pattern (16 bp):
ATTTTTGTTTAGACCA
Found at i:75720176 original size:15 final size:15
Alignment explanation
Indices: 75720124--75720175 Score: 79
Period size: 15 Copynumber: 3.5 Consensus size: 15
75720114 TTTTTTGGTT
75720124 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
75720139 ATTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
75720154 TTTTTTTTGTTGG-A
1 TTTTTTTTGCTGGAA
75720168 TTTTTTTT
1 TTTTTTTT
75720176 TTGGTCTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
14 9 0.26
15 25 0.74
ACGTcount: A:0.12, C:0.04, G:0.17, T:0.67
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:75720490 original size:31 final size:30
Alignment explanation
Indices: 75720391--75720490 Score: 87
Period size: 31 Copynumber: 3.4 Consensus size: 30
75720381 TTCTGGGGCT
* * *
75720391 AAATGTAATTTTAGAAAA-TTT-AGGGTTA
1 AAATGAAATTTAAGAAAAGTTTAAGGGTCA
* * * *
75720419 AAATGTAATTTAAGGAAAGTTTAGGGGTCT
1 AAATGAAATTTAAGAAAAGTTTAAGGGTCA
* *
75720449 AAGTAAAATTTAAAGAAAAGTTTAAGGGTCA
1 AAATGAAATTT-AAGAAAAGTTTAAGGGTCA
*
75720480 AAATGCAATTT
1 AAATGAAATTT
75720491 TTTTATTTTT
Statistics
Matches: 55, Mismatches: 14, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
28 16 0.29
29 3 0.05
30 12 0.22
31 24 0.44
ACGTcount: A:0.44, C:0.03, G:0.20, T:0.33
Consensus pattern (30 bp):
AAATGAAATTTAAGAAAAGTTTAAGGGTCA
Done.