Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 249 of 335
Found at i:75720865 original size:80 final size:80
Alignment explanation
Indices: 75720746--75722576 Score: 645
Period size: 79 Copynumber: 22.9 Consensus size: 80
75720736 AAAAGCCAAA
* * *
75720746 AAATTG-AAAATACCTCAGCGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
75720810 TTTTTTGAAAAACAA
66 TTTTTTGAAAAACAG
* *
75720825 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGTTCAACTCATCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
75720890 TTTTTTTGAAAAACAG
65 TTTTTTTGAAAAACAG
*** * *** * *
75720906 AAATTG-AAAATACCTCAATGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGGGTTGA--T
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
75720968 TTTTTTGAAAAATAG
66 TTTTTTGAAAAACAG
* * * **
75720983 AAATTAAAAAATACCTCGGCGCGTGACCCGAGCCTCAACTCATGTCTCGCAATATGAGTTGATTT
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
*
75721048 TTTTTTTGAAAAATAG
65 TTTTTTTGAAAAACAG
* *
75721064 AAATTGAAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGAATT
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATT
*
75721129 TTTTTTTGAAAAATAG
65 TTTTTTTGAAAAACAG
* * ** * * ** * * *
75721145 AAATTAAAAACAAAATTTGAAAAGACCTCG-G-CATGTGGCCCGAGACTCAACTCATCTCTCGTA
1 AAATTGAAAA-ATACCTCG----G-CGT-GTGACCCGAGGCTC-A-ACTC-A--C--CTCTCGCA
* **
75721208 ATATGGGTTGA----TTTTTGACGAACAG
52 ATATGAGTTGATTTTTTTTTGAAAAACAG
* * * * *
75721233 AAATTG-AAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTCACAATATGAGTTGATTT
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
75721297 TTTTTTGAAAAATAG
66 TTTTTTGAAAAACAG
** ** **** * *
75721312 AAATT-AAAAATAGAATTTG-AAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTTTCGCA
1 AAATTGAAAAATA-CCTCGGCGTGTGACC-C-G-A---GGCTC---A----ACTCACCTCTCGCA
*
75721375 ATATGAGTTGA----TTTTT-AACGAACAG
52 ATATGAGTTGATTTTTTTTTGAA-AAACAG
* ** * *
75721400 AAATTG-AAAATACCTCAGCGTGCAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
*
75721464 TTTTTTTGAAAAATAG
65 TTTTTTTGAAAAACAG
* * ** * * ** * * * * * * *
75721480 AAATTAAAAACAGAATTTGAAAAGACCTCG-G-CATGTGGCCCGAGATTGAACTCAC-C--TCTG
1 AAATTGAAAA-ATACCTCG----G-CGT-GTGACCCGAGGCTC-A-ACTCACCTCTCGCAATATG
* ** *
75721540 ACAATATGAGTTGATTTTTGACAAACAG
57 --AGT-TGA-TTTTTTTTTGAAAAACAG
* * * *
75721568 AAATTG-AAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTT
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
***
75721632 TTTGACGAACAGAA-ATTG
66 TTTTTTGAA-A-AACA--G
* * * * *
75721650 AAAATAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAGT
1 -AAATTGA-----AAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
75721715 TGA--TTTTTTTGAAAAATAT
60 TGATTTTTTTTTGAAAAACAG
* * * * * *
75721734 AAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTG--C
1 AAATTG-AAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
75721797 TTTTTTTGAAAGATAG
65 TTTTTTTGAAAAACAG
* * * * * *
75721813 AAATTG-AAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
** *
75721877 TTTTTTGAAAGGCAT
66 TTTTTTGAAAAACAG
* **** * * * * * * *
75721892 AAATTGAAAAATGGAACTTC--AAAAT-ACCTC-AGCGTGTGACCTGAGGCTCAACTCGC-CTCT
1 AAATTGAAAAAT---ACCTCGGCGTGTGACC-CGAG-G-CTCAACTCA--C-C-TCTCGCAATAT
* * *
75721952 CGCAATACGAGTTGATTTTTTTG-ACAACAG
56 -G-AGT-TGA-TT--TTTTTTTGAAAAACAG
* * *
75721982 AAATTG-AAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *
75722044 TTTTTTGAAAGATAA
66 TTTTTTGAAAAACAG
* * ** **
75722059 AAATTG-AAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
75722121 TTTTTTTTGAAAAACAG
64 TTTTTTTTGAAAAACAG
* * ** ** *
75722138 AAATTG-AAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA---
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
75722197 -ATTTTG-AAAACAG
66 TTTTTTGAAAAACAG
* ** ** **
75722210 AAATTG-AAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
75722269 -ATTTTG-AAAACAG
66 TTTTTTGAAAAACAG
** ** **
75722282 AAATTG-AAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
***
75722344 TTGAAAAACAT-AAATTGAACAG
66 TT-----TTTTGAAA---AACAG
** ** *
75722366 AAATTG-AAAATACCTCAACGTGT--CTTGAGGCTCAACTCACCTATCGCAATATGAGTTGA---
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
75722425 TTTTTTGAAAAGCGG
66 TTTTTTGAAAAACAG
** * ** ** * *
75722440 AAATTG-AAAATACCTC--AATGTGTCTTGAGGCTCAACTCATTTCTCGTAAAATGAGTTGA---
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
75722499 -ATTTTG-AAAACAG
66 TTTTTTGAAAAACAG
* ** ** ** * *
75722512 AAATTG-AAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGTGTTGAATT
1 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
75722574 TTT
66 TTT
75722577 GAAACAGAAA
Statistics
Matches: 1350, Mismatches: 271, Indels: 265
0.72 0.14 0.14
Matches are distributed among these distances:
72 189 0.14
73 10 0.01
74 53 0.04
75 40 0.03
76 10 0.01
77 127 0.09
78 46 0.03
79 199 0.15
80 139 0.10
81 152 0.11
82 32 0.02
83 17 0.01
84 63 0.05
85 18 0.01
86 32 0.02
87 34 0.03
88 78 0.06
89 54 0.04
90 9 0.01
91 9 0.01
92 24 0.02
93 15 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (80 bp):
AAATTGAAAAATACCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTTTGAAAAACAG
Found at i:75720972 original size:81 final size:79
Alignment explanation
Indices: 75720746--75722576 Score: 618
Period size: 72 Copynumber: 22.8 Consensus size: 79
75720736 AAAAGCCAAA
* *
75720746 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
75720811 TTTTTGAAAAACAA
66 TTTTTGAAAAATAG
* * *
75720825 AAATTGAAAAATACCTCGGCGTGTGACCCGAGGTTCAACTCATCTCTCGCAATATGAGTTGATTT
1 AAATTG-AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
*
75720890 TTTTTTTGAAAAACAG
64 TTTTTTTGAAAAATAG
*** * ** * *
75720906 AAATTGAAAATACCTCAATGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGGGTTGA--TT
1 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
75720969 TTTTTGAAAAATAG
66 TTTTTGAAAAATAG
* * * * **
75720983 AAATTAAAAAATACCTCGGCGCGTGACCCGAGCCTCAACTCATGTCTCGCAATATGAGTTGATTT
1 AAATT-GAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
75721048 TTTTTTTGAAAAATAG
64 TTTTTTTGAAAAATAG
*
75721064 AAATTGAAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGAATT
1 AAATTG-AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATT
75721129 TTTTTTTGAAAAATAG
64 TTTTTTTGAAAAATAG
* * ** * * * * * *
75721145 AAATTAAAAACAAAATTTGAAAAGACCTCG-G-CATGTGGCCCGAGACTCAACTCATCTCTCGTA
1 AAATT-GAAA-ATACCTCG----G-CGT-GTGACCTGAGGCTC-A-ACTC-A--C--CTCTCGCA
* ** *
75721208 ATATGGGTTGA----TTTTTGACGAACAG
51 ATATGAGTTGATTTTTTTTTGAAAAATAG
* * * *
75721233 AAATTGAAAATACCTCAGCATGTGAGCC-AAGGCTCAACTCACCTCTCACAATATGAGTTGATTT
1 AAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
75721297 TTTTTTGAAAAATAG
65 TTTTTTGAAAAATAG
* ** * * * * * *
75721312 AAATTAAAAATAGAATTTGAAAAGACCTCG-G-CATGTGGCCCGAGACTCAACTCACCTTTCGCA
1 AAATTGAAAAT--ACCTCG----G-CGT-GTGACCTGAGGCTC---A----ACTCACCTCTCGCA
* *
75721375 ATATGAGTTGA----TTTTT-AACGAACAG
51 ATATGAGTTGATTTTTTTTTGAA-AAATAG
* ** *
75721400 AAATTGAAAATACCTCAGCGTGCAAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
75721464 TTTTTTTGAAAAATAG
64 TTTTTTTGAAAAATAG
* * ** * * * * * * * * * *
75721480 AAATTAAAAACAGAATTTGAAAAGACCTCG-G-CATGTGGCCCGAGATTGAACTCAC-C--TCTG
1 AAATT-GAAA-ATACCTCG----G-CGT-GTGACCTGAGGCTC-A-ACTCACCTCTCGCAATATG
* ** * *
75721540 ACAATATGAGTTGATTTTTGACAAACAG
56 --AGT-TGA-TTTTTTTTTGAAAAATAG
* * *
75721568 AAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGTTGA---
1 AAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
** *
75721629 TTTTTTGACGAACAG
65 TTTTTTGAAAAATAG
** ** **** * *
75721644 AAATTGAAAATAGATTTTGAAAAT-ACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAA
1 AAATTGAAAATA-CCTCGGCGTGTGACCT-G--A-G-G-CTC-A-----A-CTCACCTCTCGCAA
* *
75721708 TGTGAGTTGA--TTTTTTTGAAAAATAT
52 TATGAGTTGATTTTTTTTTGAAAAATAG
* * * * *
75721734 AAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTG--C
1 AAATTG--AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
75721797 TTTTTTTGAAAGATAG
64 TTTTTTTGAAAAATAG
* * * * *
75721813 AAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
1 AAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*** *
75721877 TTTTTTGAAAGGCAT
65 TTTTTTGAAAAATAG
* **** * * * * * * * *
75721892 AAATTGAAAAATGGAACTTC--AAAAT-ACCTCAGCGTGTGACCTGAGGCTCAACTCGC-CTCTC
1 AAATTG-AAAAT---ACCTCGGCGTGTGACCTGAG-G-CTCAACTCA--C-C-TCTCGCAATAT-
* * * *
75721953 GCAATACGAGTTGATTTTTTTG-ACAACAG
55 G-AGT-TGA-TT--TTTTTTTGAAAAATAG
* *
75721982 AAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
75722045 TTTTTGAAAGATAA
66 TTTTTGAAAAATAG
* * * **
75722059 AAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
*
75722122 TTTTTTTGAAAAACAG
64 TTTTTTTGAAAAATAG
* * * ** *
75722138 AAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA----
1 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
75722197 ATTTTG-AAAACAG
66 TTTTTGAAAAATAG
* ** * **
75722210 AAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----
1 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
75722269 ATTTTG-AAAACAG
66 TTTTTGAAAAATAG
** * **
75722282 AAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*****
75722345 TGAAAAACATAAATTGAACAG
66 TTTTTGA-A-AAA-T----AG
** * *
75722366 AAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCACCTATCGCAATATGAGTTGA---T
1 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
***
75722426 TTTTTGAAAAGCGG
66 TTTTTGAAAAATAG
** * * ** * *
75722440 AAATTGAAAATACCTC--AATGTGTCTTGAGGCTCAACTCATTTCTCGTAAAATGAGTTGA----
1 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* *
75722499 ATTTTG-AAAACAG
66 TTTTTGAAAAATAG
* ** * ** * *
75722512 AAATTGAAATTACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGTGTTGAATTT
1 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
75722575 TT
66 TT
75722577 GAAACAGAAA
Statistics
Matches: 1338, Mismatches: 272, Indels: 287
0.71 0.14 0.15
Matches are distributed among these distances:
72 189 0.14
73 10 0.01
74 51 0.04
75 42 0.03
76 35 0.03
77 126 0.09
78 48 0.04
79 172 0.13
80 137 0.10
81 150 0.11
82 33 0.02
83 11 0.01
84 60 0.04
85 18 0.01
86 37 0.03
87 27 0.02
88 76 0.06
89 29 0.02
90 26 0.02
91 13 0.01
92 33 0.02
93 15 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (79 bp):
AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTTTGAAAAATAG
Found at i:75721286 original size:75 final size:75
Alignment explanation
Indices: 75721153--75721298 Score: 188
Period size: 75 Copynumber: 1.9 Consensus size: 75
75721143 AGAAATTAAA
* * * ** *
75721153 AACAAAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCATCTCTCGTAATATGGGTTG
1 AACAAAATTTGAAAAGACCTCAGCATGTGGCCCAAGACTCAACTCACCTCTCACAATATGAGTTG
75721218 ATTTTTGACG
66 ATTTTTGACG
* *
75721228 AACAGAAA-TTGAAAATACCTCAGCATGTGAG-CCAAGGCTCAACTCACCTCTCACAATATGAGT
1 AACA-AAATTTGAAAAGACCTCAGCATGTG-GCCCAAGACTCAACTCACCTCTCACAATATGAGT
75721291 TGATTTTT
64 TGATTTTT
75721299 TTTTGAAAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
75 57 0.93
76 4 0.07
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.27
Consensus pattern (75 bp):
AACAAAATTTGAAAAGACCTCAGCATGTGGCCCAAGACTCAACTCACCTCTCACAATATGAGTTG
ATTTTTGACG
Found at i:75721345 original size:167 final size:167
Alignment explanation
Indices: 75720975--75721825 Score: 1043
Period size: 168 Copynumber: 5.0 Consensus size: 167
75720965 GATTTTTTTG
** * ** * * **
75720975 AAAAATAGAAATTAAAAAATACCTCGGCGCGTGACCCGAGCCTCAACTCATGTCTCGCAATATGA
1 AAAAATAG-AATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGA
* * * *
75721040 GTTGATTTTTTTTTTGAAAAATAGAAATTGAAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACT
65 GTTGA-----TTTTTGACAAACAGAAATTG-AAAATACCTCAGCGTGTGAGCC-AAGGCTCAACT
*
75721104 CACCTCTCACAATATGAGTTGAATTTTTTTTTGAAAAATAGAAATT
123 CACCTCTCGCAATATGAGTTG-ATTTTTTTTTGAAAAATAGAAATT
* * * * *
75721150 AAAAACAAAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCATCTCTCGTAATATGGG
1 AAAAATAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAG
* *
75721215 TTGATTTTTGACGAACAGAAATTGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTC
66 TTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTC
*
75721280 ACAATATGAGTTGATTTTTTTTTGAAAAATAGAAATT
131 GCAATATGAGTTGATTTTTTTTTGAAAAATAGAAATT
*
75721317 AAAAATAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTTTCGCAATATGAG
1 AAAAATAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAG
* * **
75721382 TTGATTTTTAACGAACAGAAATTGAAAATACCTCAGCGTGCAAGCCAAGGCTCAACTCACCTCTC
66 TTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTC
75721447 GCAATATGAGTTGATTTTTTTTTTGAAAAATAGAAATT
131 GCAATATGAGTTGA-TTTTTTTTTGAAAAATAGAAATT
* * *
75721485 AAAAACAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGATTGAACTCACCTCT-GACAATATGA
1 AAAAATAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCG-CAATATGA
75721549 GTTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCT
65 GTTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCT
* ** *
75721614 TGCAATATGAGTTGA---TTTTTTGACGAACAGAAATT
130 CGCAATATGAGTTGATTTTTTTTTGAAAAATAGAAATT
* * * * * * * *
75721649 GAAAATAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAATAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAG
* * * * * *
75721714 TTGATTTTTTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCAC
66 TTGA--TTTTTGACAAACAGAAATTG--AAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCAC
* *
75721778 CTCTCGCAATATGAGTTG--CTTTTTTTGAAAGATAGAAATT
126 CTCTCGCAATATGAGTTGATTTTTTTTTGAAAAATAGAAATT
*
75721818 GAAAATAG
1 AAAAATAG
75721826 CTCAGCGCGT
Statistics
Matches: 602, Mismatches: 63, Indels: 28
0.87 0.09 0.04
Matches are distributed among these distances:
164 73 0.12
165 1 0.00
166 17 0.03
167 158 0.26
168 251 0.42
169 45 0.07
174 51 0.08
175 6 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (167 bp):
AAAAATAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTTTTTGAAAAATAGAAATT
Found at i:75721479 original size:335 final size:333
Alignment explanation
Indices: 75720817--75721803 Score: 1096
Period size: 335 Copynumber: 2.9 Consensus size: 333
75720807 TTTTTTTTTG
* * * * ** *
75720817 AAAAACAAAAATTGAAAAATACCTCGGCGTGTGACCCGAGGTTCAACTCATCTCTCG-CAATATG
1 AAAAACAAAATTTG-AAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCT-GACAATATG
* ****
75720881 AGTTGATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCA--ATGCGTGATTTGAGGCTCAAC
64 AGTTGA-----TTTTTGACAAACAGAAATTGAAAATACCTCAGCAT--GTGAGCCAAGGCTCAAC
** * *
75720944 TCACCTCTCGTAATATGGGTTGATTTTTTTGAAAAATAGAAATT--AAA-A-AA--T------AC
122 TCACCTCTCACAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAAAAATAGAATTTGAAAAGAC
* ** * ** *
75720997 CTCGGCGCGTGACCCGAGCCTCAACTCATGTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAAT
186 CTCGACATGTGACCCGAGACTCAACTCACATCTCGCAATATGAGTTGA----TTTTTTGAAAAAC
* * * *
75721062 AGAAATTGAAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGAA
247 AGAAATTGAAAAATACCTCAGCGTGTGACC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
75721127 TTTTTTTTTGAAAAATAGAAATT
311 TTTTTTTTTGAAAAATAGAAATT
* * *
75721150 AAAAACAAAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCATCTCTCG-TAATATGG
1 AAAAACAAAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCT-GACAATATGA
*
75721214 GTTGATTTTTGACGAACAGAAATTGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCT
65 GTTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCT
* *
75721279 CACAATATGAGTTGATTTTTTTTTGAAAAATAGAAATTAAAAATAGAATTTGAAAAGACCTCGGC
130 CACAATATGAGTTGA---TTTTTTGAAAAACAGAAATTAAAAATAGAATTTGAAAAGACCTCGAC
* * * *
75721344 ATGTGGCCCGAGACTCAACTCACCTTTCGCAATATGAGTTGA-TTTTT-AACGAACAGAAATTG-
192 ATGTGACCCGAGACTCAACTCACATCTCGCAATATGAGTTGATTTTTTGAA-AAACAGAAATTGA
**
75721406 AAAATACCTCAGCGTGCAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTT
256 AAAATACCTCAGCGTGTGA-CCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTT
75721471 GAAAAATAGAAATT
320 GAAAAATAGAAATT
* * *
75721485 AAAAACAGAATTTGAAAAGACCTCGGCATGTGGCCCGAGATTGAACTCACCTCTGACAATATGAG
1 AAAAACAAAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTGACAATATGAG
* *
75721550 TTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTT
66 TTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTC
* ** * * *
75721615 GCAATATGAGTTGATTTTTTGACGAACAGAAATTGAAAATAGATTTTGAAAATACCTCGACATGT
131 ACAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAATAGAATTTGAAAAGACCTCGACATGT
* * * *
75721680 GACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAA
196 GACCCGAGACTCAACTCACATCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTG-AAAA
* * *
75721745 ATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGCTTTTTTT
259 ATACCTCAGCGTGTGA-C-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
75721804 GAAAGATAGA
Statistics
Matches: 566, Mismatches: 63, Indels: 47
0.84 0.09 0.07
Matches are distributed among these distances:
327 62 0.11
329 23 0.04
331 3 0.01
332 126 0.22
333 15 0.03
334 15 0.03
335 207 0.37
336 70 0.12
337 2 0.00
341 43 0.08
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (333 bp):
AAAAACAAAATTTGAAAAGACCTCGGCATGTGGCCCGAGACTCAACTCACCTCTGACAATATGAG
TTGATTTTTGACAAACAGAAATTGAAAATACCTCAGCATGTGAGCCAAGGCTCAACTCACCTCTC
ACAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAAATAGAATTTGAAAAGACCTCGACATGT
GACCCGAGACTCAACTCACATCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAAT
ACCTCAGCGTGTGACCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAA
TAGAAATT
Found at i:75721854 original size:245 final size:242
Alignment explanation
Indices: 75721528--75722528 Score: 770
Period size: 228 Copynumber: 4.2 Consensus size: 242
75721518 CCCGAGATTG
* * *
75721528 AACTCACCTCT-GACAATATGAGTTG-ATTTTTGACAA-ACAGAAATTGAAAATACCTCAGCGTG
1 AACTCACCTCTCG-CAATATGAGTTGTTTTTTTGA-AAGATAGAAATTGAAAATACCTCAGCGCG
* *
75721590 TGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTGACG-AA-CAGAAATTG-AA
64 TGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGACGAAAGCAGAAATTGAAA
** * **
75721652 AATAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAGTT
129 AATAGAACTTCAAAATACCTCAG-CATGTGACCCGAGGCTCAACTCACATCTCGCAATACGAGTT
* * * *
75721716 GATTTTTTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTC
193 GATTTTTTTG-AAAACAGAAATTG--AAAATACCTCAGCGTGT--CCTGAAGCTC
*
75721771 AACTCACCTCTCGCAATATGAGTTGCTTTTTTTGAAAGATAGAAATTGAAAATAGCTCAGCGCGT
1 AACTCACCTCTCGCAATATGAGTTG-TTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCGCGT
*** *
75721836 GAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTGAAAGGCATAAATTGAAA
65 GAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGACGAAA-GCAGAAATTGAAA
* * * * *
75721901 AATGGAACTTCAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTG
129 AATAGAACTTCAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACATCTCGCAATACGAGTTG
* * *
75721966 ATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
194 ATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAAGCTC
*
75722015 AACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGATAAAAATTGAAAATACCTCA--GC
1 AACTCACCTCTCGCAATATGAGTTG---TTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCGC
* * ** ** * ***
75722078 ATG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT-----------TTTTTGA
63 GTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGACGAAAGCAGAAATTGA
* * * ** ** **
75722131 AAAACAGAAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCGCAATATAAGT
127 AAAATAGAACTTCAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACATCTCGCAATACGAGT
* * * * *
75722194 TGA--ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
192 TGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAAGCTC
** ** * *
75722243 AACTCATTTCTCGCAATATGAGTTG-AATTTTGAAA-ACAGAAATTGAAAATACCTCA--ACGTG
1 AACTCACCTCTCGCAATATGAGTTGTTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCGCGTG
* ** ** * * *
75722304 -TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTGA--AAAACATAAATTG---A
66 AGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGACGAAAGCAGAAATTGAAAA
* * * * * ** * * *
75722362 ACAGAAATTGAAAATACCTCA--ACGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGA
130 ATAGAACTTCAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACATCTCGCAATACGAGTTGA
* ** * *
75722425 -TTTTTTGAAAAGCGGAAATTGAAAATACCTCAATGTGTCTTGAGGCTC
195 TTTTTTTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAAGCTC
** * * ** * *
75722473 AACTCATTTCTCGTAAAATGAGTTG-AATTTTGAAA-ACAGAAATTGAAATTACCTCA
1 AACTCACCTCTCGCAATATGAGTTGTTTTTTTGAAAGATAGAAATTGAAAATACCTCA
75722529 ACGTGTCTTG
Statistics
Matches: 655, Mismatches: 78, Indels: 63
0.82 0.10 0.08
Matches are distributed among these distances:
222 5 0.01
223 59 0.09
224 8 0.01
226 3 0.00
228 119 0.18
229 9 0.01
230 116 0.18
231 3 0.00
232 29 0.04
243 24 0.04
244 75 0.11
245 74 0.11
246 48 0.07
248 18 0.03
249 64 0.10
250 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (242 bp):
AACTCACCTCTCGCAATATGAGTTGTTTTTTTGAAAGATAGAAATTGAAAATACCTCAGCGCGTG
AGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTGACGAAAGCAGAAATTGAAAAA
TAGAACTTCAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACATCTCGCAATACGAGTTGAT
TTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAAGCTC
Found at i:75722243 original size:72 final size:72
Alignment explanation
Indices: 75721912--75722587 Score: 778
Period size: 72 Copynumber: 9.0 Consensus size: 72
75721902 ATGGAACTTC
* * *** * *
75721912 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGAC
1 AAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTGAA
75721977 AACAGAAATTG
62 AACAGAAATTG
* * * **
75721988 AAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAA
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----TTTTTGAA
* *
75722053 AGATAAAAATTG
62 A-ACAGAAATTG
* *
75722065 AAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTTG
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA------TTTTTG
75722130 AAAAACAGAAATTG
60 -AAAACAGAAATTG
* * * *
75722144 AAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACA
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACA
75722209 GAAATTG
66 GAAATTG
* *
75722216 AAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACA
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACA
75722281 GAAATTG
66 GAAATTG
75722288 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAAC
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTG------
75722353 ATAAATTGAACAGAAATTG
60 ---AA---AACAGAAATTG
** *
75722372 AAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTGAAAAG
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTGAAAA-
*
75722437 CGGAAATTG
64 CAGAAATTG
* * * *
75722446 AAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGTAAAATGAGTTGAATTTTGAAAACA
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACA
75722511 GAAATTG
66 GAAATTG
* *
75722518 AAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGTGTTGAATTTTTG-AAAC
1 AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTTGAAAAC
75722582 AGAAAT
65 AGAAAT
75722588 AAAAGCATCA
Statistics
Matches: 540, Mismatches: 39, Indels: 46
0.86 0.06 0.07
Matches are distributed among these distances:
72 203 0.38
73 22 0.04
74 89 0.16
76 28 0.05
77 56 0.10
79 70 0.13
80 3 0.01
81 2 0.00
84 61 0.11
85 6 0.01
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (72 bp):
AAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAACA
GAAATTG
Found at i:75722479 original size:302 final size:296
Alignment explanation
Indices: 75721933--75722587 Score: 891
Period size: 302 Copynumber: 2.2 Consensus size: 296
75721923 GCGTGTGACC
*** * * * *
75721933 TGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTC
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAAATACCTC
* ***** *
75721998 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGATAAAAAT
64 AACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAATAAAAAT
* ** *
75722063 TGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTT
129 TGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGA----TTTTTT
* *
75722128 TGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATAAG
190 TGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAAAATAAG
75722193 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCT
255 TTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCT
75722235 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAA
* **
75722300 CGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACA
66 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-A-AAA-T--A-A
*
75722365 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGA-TTTT
125 -AAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
* * ** * *
75722429 TTGAAAAGCGGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGTAAAATGA
189 TTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAAAATAA
75722494 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCT
254 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCT
*
75722537 TGAGGCTCAACTCATTTCTCGCAATATGTGTTGAATTTTTG-AAACAGAAAT
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTTGAAAACAGAAAT
75722588 AAAAGCATCA
Statistics
Matches: 314, Mismatches: 31, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
300 71 0.23
301 1 0.00
302 180 0.57
303 6 0.02
305 1 0.00
306 1 0.00
307 54 0.17
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (296 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAA
CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAATAAAAATTG
AAAATACCTCAACATGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAA
ACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAAAATAAGTTGAAT
TTTGAAAACAGAAATTGAAATTACCTCAACGTGTCT
Found at i:75729935 original size:24 final size:24
Alignment explanation
Indices: 75729907--75729956 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
75729897 ATGAAAGTTT
*
75729907 AATGCAAAT-AATGTAATGCAATGC
1 AATGCAAATGAATGGAATG-AATGC
*
75729931 AATGCAAATGTATGGAATGAATGC
1 AATGCAAATGAATGGAATGAATGC
75729955 AA
1 AA
75729957 AAGAAAGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (24 bp):
AATGCAAATGAATGGAATGAATGC
Found at i:75732367 original size:3 final size:3
Alignment explanation
Indices: 75732359--75732411 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
75732349 ATATATTTGG
75732359 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
75732407 TAA TA
1 TAA TA
75732412 TGTACATAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:75732834 original size:15 final size:16
Alignment explanation
Indices: 75732816--75732849 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
75732806 ATATTTTTTT
75732816 ATTTTT-TTAAGACCA
1 ATTTTTGTTAAGACCA
*
75732831 ATTTTTGTTTAGACCA
1 ATTTTTGTTAAGACCA
75732847 ATT
1 ATT
75732850 ACAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.50
Consensus pattern (16 bp):
ATTTTTGTTAAGACCA
Found at i:75733442 original size:15 final size:15
Alignment explanation
Indices: 75733389--75733442 Score: 90
Period size: 15 Copynumber: 3.5 Consensus size: 15
75733379 TTTTTTGGTT
75733389 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
75733404 ATTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
75733419 TTTTTTTTTGCTGGAA
1 -TTTTTTTTGCTGGAA
75733435 TTTTTTTT
1 TTTTTTTT
75733443 TTGCTCTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
15 22 0.61
16 14 0.39
ACGTcount: A:0.13, C:0.06, G:0.17, T:0.65
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:75733443 original size:16 final size:16
Alignment explanation
Indices: 75733388--75733443 Score: 96
Period size: 16 Copynumber: 3.6 Consensus size: 16
75733378 TTTTTTTGGT
75733388 TTTTTTTTTGCTGGAA
1 TTTTTTTTTGCTGGAA
*
75733404 -ATTTTTTTGCTGGAA
1 TTTTTTTTTGCTGGAA
75733419 TTTTTTTTTGCTGGAA
1 TTTTTTTTTGCTGGAA
75733435 TTTTTTTTT
1 TTTTTTTTT
75733444 TGCTCTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.38
16 23 0.62
ACGTcount: A:0.12, C:0.05, G:0.16, T:0.66
Consensus pattern (16 bp):
TTTTTTTTTGCTGGAA
Found at i:75733741 original size:31 final size:30
Alignment explanation
Indices: 75733653--75733759 Score: 105
Period size: 31 Copynumber: 3.6 Consensus size: 30
75733643 TAAAACTTCT
*
75733653 GGGG-CTAAATGTAATTTTTAGAAAA-TTTA
1 GGGGTCTAAATGTAA-TTTAAGAAAAGTTTA
*
75733682 -GGGT-TAAAATGTAATTTAAGGAAAGTTTA
1 GGGGTCT-AAATGTAATTTAAGAAAAGTTTA
*
75733711 GGGGTCTAAATGAAATTTAAAGAAAAGTTTA
1 GGGGTCTAAATGTAATTT-AAGAAAAGTTTA
* * *
75733742 AGGGTCAAAATGCAATTT
1 GGGGTCTAAATGTAATTT
75733760 TTTTATTTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
28 12 0.18
29 12 0.18
30 14 0.22
31 27 0.42
ACGTcount: A:0.41, C:0.04, G:0.22, T:0.33
Consensus pattern (30 bp):
GGGGTCTAAATGTAATTTAAGAAAAGTTTA
Found at i:75739768 original size:54 final size:54
Alignment explanation
Indices: 75739710--75739859 Score: 201
Period size: 54 Copynumber: 2.8 Consensus size: 54
75739700 AAAGTACTCC
* * * * *
75739710 CGATTTACAGAATTGCCATTTTACCCTTAGTTTATAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAATTTATAAAATTACTATTTTACCCT
* * *
75739764 CGATTTACAAAATTATCGTTTTACCCTCAATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCTCAATTTATAAAATTACTATTTTACCCT
* * *
75739818 CGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTA
1 CGATTTACAGAATTACCGTTTTACCCTCAATTTATAAAATTA
75739860 ACAAAATACC
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 82 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (54 bp):
CGATTTACAGAATTACCGTTTTACCCTCAATTTATAAAATTACTATTTTACCCT
Found at i:75739858 original size:27 final size:27
Alignment explanation
Indices: 75739710--75739859 Score: 149
Period size: 27 Copynumber: 5.6 Consensus size: 27
75739700 AAAGTACTCC
* *
75739710 CGATTTACAGAATTGCCATTTTACCCT
1 CGATTTACAAAATTACCATTTTACCCT
* * * *
75739737 -TAGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAAAATTACCATTTTACCCT
* *
75739764 CGATTTACAAAATTATCGTTTTACCCT
1 CGATTTACAAAATTACCATTTTACCCT
* ** *
75739791 CAATTTGTAAAATTACTATTTTACCCT
1 CGATTTACAAAATTACCATTTTACCCT
* * *
75739818 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAAAATTACCATTTTACCCT
75739845 CGATTTACAAAATTA
1 CGATTTACAAAATTA
75739860 ACAAAATACC
Statistics
Matches: 98, Mismatches: 23, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
26 1 0.01
27 96 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (27 bp):
CGATTTACAAAATTACCATTTTACCCT
Found at i:75739869 original size:27 final size:27
Alignment explanation
Indices: 75739846--75739897 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
75739836 TTTTACCCTC
75739846 GATTTACAAAATTAAC-AAAATACCCAT
1 GATTTACAAAATT-ACTAAAATACCCAT
* *
75739873 GGTTTGCAAAATTACTAAAATACCC
1 GATTTACAAAATTACTAAAATACCC
75739898 CTGTAGGGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 2 0.09
27 20 0.91
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (27 bp):
GATTTACAAAATTACTAAAATACCCAT
Found at i:75739870 original size:54 final size:54
Alignment explanation
Indices: 75739691--75739887 Score: 139
Period size: 54 Copynumber: 3.6 Consensus size: 54
75739681 CTCGACTTGT
* * * * * * * *
75739691 AAAATTACCAAAGTACTCC-CGATTTACAGAATTGCCATTTTACCCTTAGTTTAT
1 AAAATTACTAAAATAC-CCTCGATTTACAAAATTACCGTTTTACCCTCAATTTAC
* *** * **
75739745 AGAATTACTATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCAATTTGT
1 AAAATTACTAAAATACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTAC
*** * * *
75739799 AAAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACTAAAATACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTAC
* *
75739853 AAAATTAAC-AAAATACCCAT-GGTTTGCAAAATTAC
1 AAAATT-ACTAAAATACCC-TCGATTTACAAAATTAC
75739888 TAAAATACCC
Statistics
Matches: 114, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
53 2 0.02
54 109 0.96
55 3 0.03
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTAC
Found at i:75739884 original size:81 final size:81
Alignment explanation
Indices: 75739727--75739889 Score: 195
Period size: 81 Copynumber: 2.0 Consensus size: 81
75739717 CAGAATTGCC
* * * ****
75739727 ATTTTACCCTTAGTTTATAGAATTACTATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTC
1 ATTTTACCCTGAGTTTATAGAATTACCATTTTACCCTCGATTTACAAAATTAACAAAATACCCTC
*
75739792 AATTTGTAAAATTACT
66 AATTTGCAAAATTACT
*
75739808 ATTTTACCCTCGA-TTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTAACAAAATACCCA
1 ATTTTACCCT-GAGTTTATAGAATTACCATTTTACCCTCGATTTACAAAATTAACAAAATACCC-
**
75739872 T-GGTTTGCAAAATTACT
64 TCAATTTGCAAAATTACT
75739889 A
1 A
75739890 AAATACCCCT
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
81 67 0.97
82 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (81 bp):
ATTTTACCCTGAGTTTATAGAATTACCATTTTACCCTCGATTTACAAAATTAACAAAATACCCTC
AATTTGCAAAATTACT
Found at i:75739910 original size:27 final size:27
Alignment explanation
Indices: 75739880--75739943 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
75739870 CATGGTTTGC
* *
75739880 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACCAAAATACCCCTGTAAGGT
*
75739907 AAAATTACCGAAATACCCCTGTAAGGT
1 AAAATTACCAAAATACCCCTGTAAGGT
*
75739934 AGAATTACCA
1 AAAATTACCA
75739944 TTTTGCCCCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.23
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGTAAGGT
Found at i:75742238 original size:27 final size:27
Alignment explanation
Indices: 75742197--75742367 Score: 171
Period size: 27 Copynumber: 6.3 Consensus size: 27
75742187 TACTGAAATG
* * *
75742197 CCCTTGATTTGTAGAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
75742224 CCATCGATATATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
75742251 CCCTTGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
75742278 CCCTTGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
75742305 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * * *
75742332 CCCTTGATCTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
75742359 CCCTCGATT
1 CCCTCGATT
75742368 GTGAAATTAC
Statistics
Matches: 120, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:75742269 original size:54 final size:54
Alignment explanation
Indices: 75742209--75742367 Score: 210
Period size: 54 Copynumber: 2.9 Consensus size: 54
75742199 CTTGATTTGT
* * * * * *
75742209 AGAATTATCATTTTACCATCGATATATAGAATTACCGTTTCACCCTTGATTTAC
1 AGAATTACCATTTTACCCTTGATATATAAAATTACCGTTTTACCCTCGATTTAC
* * *
75742263 AAAATTACCATTTTACCCTTGATTTATAAAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTTGATATATAAAATTACCGTTTTACCCTCGATTTAC
* * *
75742317 AGAATTACCGTTTTACCCTTGATCTACAAAATTACCGTTTTACCCTCGATT
1 AGAATTACCATTTTACCCTTGATATATAAAATTACCGTTTTACCCTCGATT
75742368 GTGAAATTAC
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.39
Consensus pattern (54 bp):
AGAATTACCATTTTACCCTTGATATATAAAATTACCGTTTTACCCTCGATTTAC
Found at i:75742312 original size:81 final size:81
Alignment explanation
Indices: 75742197--75742367 Score: 252
Period size: 81 Copynumber: 2.1 Consensus size: 81
75742187 TACTGAAATG
* * * * *
75742197 CCCTTGATTTGTAGAATTATCATTTTACCATCGATATATAGAATTACCGTTTCACCCTTGATTTA
1 CCCTTGATTTATAAAATTACCATTTTACCATCGATATACAGAATTACCGTTTCACCCTTGATCTA
75742262 CAAAATTACCATTTTA
66 CAAAATTACCATTTTA
* * *
75742278 CCCTTGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTTGATCTA
1 CCCTTGATTTATAAAATTACCATTTTACCATCGATATACAGAATTACCGTTTCACCCTTGATCTA
*
75742343 CAAAATTACCGTTTTA
66 CAAAATTACCATTTTA
*
75742359 CCCTCGATT
1 CCCTTGATT
75742368 GTGAAATTAC
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTTGATTTATAAAATTACCATTTTACCATCGATATACAGAATTACCGTTTCACCCTTGATCTA
CAAAATTACCATTTTA
Found at i:75742429 original size:27 final size:27
Alignment explanation
Indices: 75742399--75742576 Score: 166
Period size: 27 Copynumber: 6.6 Consensus size: 27
75742389 TGTATGATAG
*
75742399 AATTACCACAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
75742426 AATTACCAAAACACCCCTAGTTAGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
75742453 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
75742480 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
75742507 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
* *
75742534 AATTA-CAGAAATA-CCCTTGATTTGTAG
1 AATTACCA-AAATACCCCTAG-TTTGTAA
* *
75742561 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
75742577 TTGTAGGATG
Statistics
Matches: 122, Mismatches: 22, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
26 9 0.07
27 105 0.86
28 8 0.07
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:75742567 original size:81 final size:79
Alignment explanation
Indices: 75742371--75742570 Score: 203
Period size: 81 Copynumber: 2.5 Consensus size: 79
75742361 CTCGATTGTG
* * *
75742371 AAATTACTGAAATACCCATGTATGATAGAATTACCACAATACCC-CTAGTTTGTAAAATTACCAA
1 AAATTACAGAAATACCC-TGTTTG-TAGAATTACCA-AATACCCTCTAATTTGTAAAATTACCAA
*
75742435 AACACCCCTAGTTAGTA
63 AACACCCCTAGTTAGCA
75742452 AAATTACCA-AAATACCACTGGTTTGT-GAAATTACCGAAATACCCTC-AATTTGTAAAATTACC
1 AAATTA-CAGAAATACC-CT-GTTTGTAG-AATTACC-AAATACCCTCTAATTTGTAAAATTACC
* *
75742514 AAAATACCCCTGATTTA-CA
61 AAAACACCCCT-AGTTAGCA
*
75742533 AAATTACAGAAATACCCTTGATTTGTAGATTTACCAAA
1 AAATTACAGAAATACCC-TG-TTTGTAGAATTACCAAA
75742571 ACACCCTTGT
Statistics
Matches: 101, Mismatches: 7, Indels: 23
0.77 0.05 0.18
Matches are distributed among these distances:
80 8 0.08
81 80 0.79
82 13 0.13
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (79 bp):
AAATTACAGAAATACCCTGTTTGTAGAATTACCAAATACCCTCTAATTTGTAAAATTACCAAAAC
ACCCCTAGTTAGCA
Found at i:75742640 original size:27 final size:27
Alignment explanation
Indices: 75742597--75742670 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
75742587 AAATGACTAA
*
75742597 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
75742624 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
75742651 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
75742671 TGATGAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:75743438 original size:20 final size:20
Alignment explanation
Indices: 75743415--75743465 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
75743405 TTGATGTGAT
*
75743415 ATGCACATGGTATGTATAAA
1 ATGCACATGATATGTATAAA
*
75743435 ATGCACATGATATGTATGAA
1 ATGCACATGATATGTATAAA
*
75743455 ATGCATATGAT
1 ATGCACATGAT
75743466 GTATTCATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGCACATGATATGTATAAA
Found at i:75743594 original size:25 final size:25
Alignment explanation
Indices: 75743515--75743646 Score: 175
Period size: 26 Copynumber: 5.4 Consensus size: 25
75743505 GAGGAACTAC
75743515 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATG-CCCAGTTTATTG
**
75743541 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATG-CCCAGTTTATTG
75743567 AAAAGGGCTTATGCCCAGTTTATTG
1 AAAAGGGCTTATGCCCAGTTTATTG
*
75743592 AAAAGGGCTT-TGCCCAGTTTA-CG
1 AAAAGGGCTTATGCCCAGTTTATTG
75743615 AAAAGGGCTT-TGCCCAG-TTATT-
1 AAAAGGGCTTATGCCCAGTTTATTG
75743637 AAAAGAGGCT
1 AAAAG-GGCT
75743647 AGGCCTCCAG
Statistics
Matches: 98, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
22 8 0.08
23 22 0.22
24 11 0.11
25 20 0.20
26 37 0.38
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTATGCCCAGTTTATTG
Found at i:75743836 original size:42 final size:42
Alignment explanation
Indices: 75743777--75743868 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
75743767 TAGTCTCCCC
* ** *
75743777 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
75743819 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
75743861 AAATGGGC
1 AAATGGGC
75743869 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:75746234 original size:26 final size:26
Alignment explanation
Indices: 75746203--75746370 Score: 153
Period size: 26 Copynumber: 6.3 Consensus size: 26
75746193 TACTGAAATG
*
75746203 CCCTCGATTTGTAGAATTACCATTTA
1 CCCTCGATTTATAGAATTACCATTTA
* * *
75746229 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACC-ATTTA
75746256 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCA-TTTA
* * *
75746283 -CCTTGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACC-ATTTA
*
75746309 CCCTC-ATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCA-TTTA
* * **
75746335 CCCTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTATAGAATTA-CCATTTA
75746362 CCCTCGATT
1 CCCTCGATT
75746371 GTTAAATTAC
Statistics
Matches: 117, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
26 63 0.54
27 52 0.44
28 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (26 bp):
CCCTCGATTTATAGAATTACCATTTA
Found at i:75746263 original size:53 final size:54
Alignment explanation
Indices: 75746203--75746370 Score: 254
Period size: 53 Copynumber: 3.2 Consensus size: 54
75746193 TACTGAAATG
*
75746203 CCCTCGATTTGTAGAATTACCA-TTTACCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA
* *
75746256 CCCTCGATTTATAGAATTACCATTTTA-CCTTGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA
* *
75746309 CCCTC-ATTTATAAAATTACCATTTTACCCTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGA-TTTACAAAATTACCGTTTTA
75746362 CCCTCGATT
1 CCCTCGATT
75746371 GTTAAATTAC
Statistics
Matches: 104, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
52 21 0.20
53 76 0.73
54 7 0.07
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA
Found at i:75746380 original size:79 final size:80
Alignment explanation
Indices: 75746203--75746370 Score: 207
Period size: 79 Copynumber: 2.1 Consensus size: 80
75746193 TACTGAAATG
* * *
75746203 CCCTCGATTTGTAGAATTACCATTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTAT
1 CCCTCGATTTATAGAATTACCATTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTAC
*
75746268 AGAATTACCATTTTA
66 AAAATTACCATTTTA
* * * *
75746283 -CCTTGATTTACAGAATTACCGTTTTACCCTC-ATTTATAAAATTACCATTTTACCCTC-AGTTT
1 CCCTCGATTTATAGAATTACC-ATTTACCCTCGATTTACAAAATTACCATTTTACCCTCGA-TTT
* *
75746345 ACAAAATTATCGTTTTA
64 ACAAAATTACCATTTTA
75746362 CCCTCGATT
1 CCCTCGATT
75746371 GTTAAATTAC
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.77
80 16 0.22
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (80 bp):
CCCTCGATTTATAGAATTACCATTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTAC
AAAATTACCATTTTA
Found at i:75746481 original size:27 final size:26
Alignment explanation
Indices: 75746402--75746576 Score: 144
Period size: 27 Copynumber: 6.7 Consensus size: 26
75746392 TGTAGGATAG
*
75746402 AATTACC-ACATACCCCT-GTTTGT-A
1 AATTACCAAAATA-CCCTAGTTTGTAA
* *
75746426 AATTACCAAAACACCCTAGTTAGTAA
1 AATTACCAAAATACCCTAGTTTGTAA
*
75746452 AATTACCAAAATACCACTAGTTTGTGA
1 AATTACCAAAATACC-CTAGTTTGTAA
* *
75746479 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-AGTTTGTAA
**
75746506 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATA-CCCTAG-TTTGTAA
* *
75746533 AATTA-CAGAAATACCCTTGATTTGTAG
1 AATTACCA-AAATACCCTAG-TTTGTAA
* *
75746560 ATTTACCAAAACACCCT
1 AATTACCAAAATACCCT
75746577 TGTAGGATGA
Statistics
Matches: 123, Mismatches: 18, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
24 11 0.09
25 8 0.07
26 23 0.19
27 75 0.61
28 6 0.05
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTGTAA
Found at i:75746514 original size:54 final size:51
Alignment explanation
Indices: 75746402--75746575 Score: 170
Period size: 54 Copynumber: 3.3 Consensus size: 51
75746392 TGTAGGATAG
* * * * *
75746402 AATTACC-ACATACCCCTGTTTGTAAATTACCAAAACACCCTAGTTAGTAA
1 AATTACCAAAATACCCCTGTTTGTAAATTACCGAAATACCCTAATTTGTAA
*
75746452 AATTACCAAAATACCACTAGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GTTTGT-AAATTACCGAAATACCCT-AATTTGTAA
** * * *
75746506 AATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGATTTGTAG
1 AATTACCAAAATACCCCTG-TTT-GTAAATTACCGAAATACCC-TAATTTGTAA
* *
75746560 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
75746576 TTGTAGGATG
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
50 7 0.07
51 8 0.08
52 6 0.06
53 17 0.17
54 64 0.62
55 1 0.01
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (51 bp):
AATTACCAAAATACCCCTGTTTGTAAATTACCGAAATACCCTAATTTGTAA
Found at i:75746638 original size:26 final size:27
Alignment explanation
Indices: 75746609--75746668 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
75746599 ACCCCTAATA
75746609 GGTAAAAAGACCGTAA-AGCCC-TGTAG
1 GGTAAAAAGACCGTAATA-CCCTTGTAG
** *
75746635 GGTAAAGTGACCGTAATACCCTTGTAT
1 GGTAAAAAGACCGTAATACCCTTGTAG
75746662 GGTAAAA
1 GGTAAAA
75746669 TGATGAATAC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 17 0.61
27 11 0.39
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAAAGACCGTAATACCCTTGTAG
Found at i:75747375 original size:20 final size:20
Alignment explanation
Indices: 75747350--75747416 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
75747340 GATATGATAT
*
75747350 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
75747370 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
75747390 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
75747410 ACATGAT
1 ACATGAT
75747417 GTATTCATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:75747511 original size:25 final size:25
Alignment explanation
Indices: 75747466--75747549 Score: 109
Period size: 25 Copynumber: 3.4 Consensus size: 25
75747456 GAGGAAGTGC
75747466 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
**
75747492 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATTG
*
75747517 AAAAGGGCTTTGCTCCAG-TTATT-
1 AAAAGGGCTTTGCCCCAGTTTATTG
75747540 AAAAGAGGCT
1 AAAAG-GGCT
75747550 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
23 5 0.10
24 7 0.13
25 30 0.58
26 10 0.19
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:75747741 original size:42 final size:42
Alignment explanation
Indices: 75747682--75747773 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
75747672 TAGTCTCCCC
* ** *
75747682 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
75747724 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
75747766 AAATGGGC
1 AAATGGGC
75747774 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:75747844 original size:31 final size:31
Alignment explanation
Indices: 75747797--75747903 Score: 166
Period size: 30 Copynumber: 3.5 Consensus size: 31
75747787 CGTTTACAGT
75747797 AAAGGCTTC-GCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
75747827 AAAGGCTTTGGCCCAGTG-ATTGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
75747857 AAAGGCTTCGGCCCAGTGATATGATTTAT-A
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
75747887 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
75747904 AACCGTTAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
30 54 0.77
31 16 0.23
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:75750202 original size:27 final size:27
Alignment explanation
Indices: 75750172--75750368 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
75750162 TACTGAAATG
** *
75750172 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * * *
75750199 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
75750226 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
75750253 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
75750280 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
75750307 CCCTC-ATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
75750333 CCTTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
75750360 CCCTCGATT
1 CCCTCGATT
75750369 GTGAAATTAC
Statistics
Matches: 152, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
26 25 0.16
27 126 0.83
28 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:75750287 original size:81 final size:80
Alignment explanation
Indices: 75750172--75750368 Score: 297
Period size: 81 Copynumber: 2.5 Consensus size: 80
75750162 TACTGAAATG
* * *
75750172 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTCACCCTC-ATTTA
75750237 CAAAATTACCATTTTA
65 CAAAATTACCATTTTA
*
75750253 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCATTTAC
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTCACCCTCATTTAC
75750318 AAAATTACCATTTTA
66 AAAATTACCATTTTA
* * * *
75750333 CCTTC-AGTTTACAAAATTACCGTTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
75750369 GTGAAATTAC
Statistics
Matches: 107, Mismatches: 8, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
79 1 0.01
80 51 0.48
81 55 0.51
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (80 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTCACCCTCATTTAC
AAAATTACCATTTTA
Found at i:75750538 original size:54 final size:54
Alignment explanation
Indices: 75750400--75750577 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 54
75750390 TGTAGGATAG
* * * * *
75750400 AATTACCATAATACCCCT-AGTTTGTAAAATTACCAAAACACCCTTAGTTAGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAAAATTACCGAAATACCCTTAATTTGTAA
* * * *
75750454 AATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTTAATTTGTAA
** * * *
75750508 AATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGATTTGTAG
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTTAATTTGTAA
* *
75750562 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
75750578 TTGTAGGATG
Statistics
Matches: 103, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 103 1.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTTAATTTGTAA
Found at i:75750568 original size:81 final size:81
Alignment explanation
Indices: 75750420--75750578 Score: 182
Period size: 81 Copynumber: 2.0 Consensus size: 81
75750410 ATACCCCTAG
* * *
75750420 TTTGTAAAATTACCAAAACACCCTTAGTTAGTAAAATTACCAAAATACCACTGGTTTGTGAAATT
1 TTTGTAAAATTACCAAAACACCCTGAGTTAGCAAAATTACCAAAATACCACTGATTTGTGAAATT
* *
75750485 ACCGAAATACCCTCAA
66 ACCAAAACACCCTCAA
* *
75750501 TTTGTAAAATTACCAAAATACCCCTGATTTA-CAAAATTA-CAGAAATACC-CTTGATTTGT-AG
1 TTTGTAAAATTACCAAAACA-CCCTGAGTTAGCAAAATTACCA-AAATACCAC-TGATTTGTGA-
*
75750562 ATTTACCAAAACACCCT
62 AATTACCAAAACACCCT
75750579 TGTAGGATGA
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
80 4 0.06
81 54 0.82
82 8 0.12
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
TTTGTAAAATTACCAAAACACCCTGAGTTAGCAAAATTACCAAAATACCACTGATTTGTGAAATT
ACCAAAACACCCTCAA
Found at i:75750578 original size:27 final size:27
Alignment explanation
Indices: 75750400--75750580 Score: 163
Period size: 27 Copynumber: 6.7 Consensus size: 27
75750390 TGTAGGATAG
* *
75750400 AATTACCATAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
75750427 AATTACCAAAACACCCTT-AGTTAGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
75750454 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTGATTTGTAA
* **
75750481 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* **
75750508 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
75750535 AATTA-CAGAAATACCCTTGATTTGTAG
1 AATTACCA-AAATACCCTTGATTTGTAA
* *
75750562 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
75750581 TAGGATGAAA
Statistics
Matches: 124, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.02
27 118 0.95
28 3 0.02
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:75756765 original size:23 final size:23
Alignment explanation
Indices: 75756739--75756782 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
75756729 TGGGTATGTG
*
75756739 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
75756762 ATGAATTTATCTTGAAAATAT
1 ATGAAGTTATCTTGAAAATAT
75756783 ATTGAATTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.94
24 1 0.06
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:75761134 original size:21 final size:21
Alignment explanation
Indices: 75761108--75761169 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
75761098 AACAGTGATA
*
75761108 CACATGATATGACGTGATATG
1 CACATGATATGACATGATATG
**
75761129 CACATGATATGTTATGATATG
1 CACATGATATGACATGATATG
75761150 CACATGATATG-CTATGATAT
1 CACATGATATGAC-ATGATAT
75761170 ATTCACTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (21 bp):
CACATGATATGACATGATATG
Found at i:75761138 original size:11 final size:11
Alignment explanation
Indices: 75761108--75761161 Score: 67
Period size: 11 Copynumber: 5.1 Consensus size: 11
75761098 AACAGTGATA
75761108 CACATGATATG
1 CACATGATATG
*
75761119 -ACGTGATATG
1 CACATGATATG
75761129 CACATGATATG
1 CACATGATATG
**
75761140 -TTATGATATG
1 CACATGATATG
75761150 CACATGATATG
1 CACATGATATG
75761161 C
1 C
75761162 TATGATATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
10 17 0.49
11 18 0.51
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.31
Consensus pattern (11 bp):
CACATGATATG
Found at i:75761271 original size:25 final size:24
Alignment explanation
Indices: 75761217--75761275 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 24
75761207 AGGAAGTGTG
75761217 AAAAAGGGCTTTGCCCCAGTTTATC
1 AAAAA-GGCTTTGCCCCAGTTTATC
* *
75761242 GAAAAAGGCTTTGCCCCAGTTTTTT
1 -AAAAAGGCTTTGCCCCAGTTTATC
75761267 AAAAAGGCT
1 AAAAAGGCT
75761276 AGGCCTCCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 9 0.29
25 17 0.55
26 5 0.16
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTTATC
Found at i:75770129 original size:41 final size:41
Alignment explanation
Indices: 75770072--75770151 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
75770062 GTGACACATC
* * *
75770072 AGATTCGGCCATAACGTCT-GGGCTGGGTTTGGGGTGTTACA
1 AGATTCAGCCATAACGTCTAGGTC-GGGTTTGAGGTGTTACA
75770113 AGATTCAGCCATAACGTCTAGGTCGGGTTTGAGGTGTTA
1 AGATTCAGCCATAACGTCTAGGTCGGGTTTGAGGTGTTA
75770152 TATTTAGTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 32 0.91
42 3 0.09
ACGTcount: A:0.20, C:0.16, G:0.34, T:0.30
Consensus pattern (41 bp):
AGATTCAGCCATAACGTCTAGGTCGGGTTTGAGGTGTTACA
Found at i:75774941 original size:39 final size:40
Alignment explanation
Indices: 75774821--75774968 Score: 219
Period size: 40 Copynumber: 3.7 Consensus size: 40
75774811 GCTACTTGCT
75774821 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
75774861 CAATTGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
75774901 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
75774940 CAAATGCCTTTGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
75774969 CATCTGAATA
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.34
40 61 0.64
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:75774941 original size:79 final size:80
Alignment explanation
Indices: 75774821--75774968 Score: 219
Period size: 79 Copynumber: 1.9 Consensus size: 80
75774811 GCTACTTGCT
* * *
75774821 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCAGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCAGGACTTAGCCCGG
75774886 TTATAGTAACTCGCA
66 TTATAGTAACTCGCA
* **
75774901 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCAGGACTTAGCCCG
75774964 GTTAT
65 GTTAT
75774969 CATCTGAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.02
79 46 0.75
80 14 0.23
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCAGGACTTAGCCCGG
TTATAGTAACTCGCA
Found at i:75779310 original size:40 final size:40
Alignment explanation
Indices: 75779261--75779395 Score: 243
Period size: 40 Copynumber: 3.4 Consensus size: 40
75779251 CGGATGTAAC
*
75779261 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
75779301 AACCCGCACGAATGCCTTCGGGACTTAAGCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
75779341 AACCCGCACGAATGCCTTCAGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
75779381 AACCCGCACGAATGC
1 AACCCGCACGAATGC
75779396 TATGCACATA
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:75785603 original size:40 final size:39
Alignment explanation
Indices: 75785435--75785614 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 39
75785425 AGAAATTGAA
* *
75785435 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
75785475 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
75785515 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
75785555 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
*
75785595 TGATATCCGGG-TAAGTCCCG
1 TGATATCCGGGCTAAGACCCG
75785615 TTGGCCTTGG
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 12 0.10
40 95 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:75793631 original size:40 final size:39
Alignment explanation
Indices: 75793463--75793633 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
75793453 AGAAATTGAA
* *
75793463 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
75793503 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
75793543 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
75793583 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
75793623 TGATATCCGGG
1 TGATATCCGGG
75793634 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:75796189 original size:22 final size:22
Alignment explanation
Indices: 75796161--75796205 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
75796151 TCCCCACATG
*
75796161 GAGTGTA-AGGCTGGACGGAGTA
1 GAGTGTAGAGGATGGACGG-GTA
75796183 GAGTGTAGAGGATGGACGGGTA
1 GAGTGTAGAGGATGGACGGGTA
75796205 G
1 G
75796206 GATTTCTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.27, C:0.07, G:0.49, T:0.18
Consensus pattern (22 bp):
GAGTGTAGAGGATGGACGGGTA
Found at i:75796281 original size:34 final size:34
Alignment explanation
Indices: 75796233--75796298 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
75796223 CTGTTACTGT
* *
75796233 TACTGAAATGGGCTAAGGCTCACACTGATACTAA
1 TACTGAAATGGGCTAAGGCCCAAACTGATACTAA
* *
75796267 TACTGTAATTGGCTAAGGCCCAAACTGATACT
1 TACTGAAATGGGCTAAGGCCCAAACTGATACT
75796299 GGACTTCTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (34 bp):
TACTGAAATGGGCTAAGGCCCAAACTGATACTAA
Found at i:75821128 original size:20 final size:20
Alignment explanation
Indices: 75821103--75821144 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
75821093 AACTTAAACC
75821103 AAAGTATTATAAATTACATT
1 AAAGTATTATAAATTACATT
75821123 AAAGTATTATAAATTACATT
1 AAAGTATTATAAATTACATT
75821143 AA
1 AA
75821145 CGTTTTGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (20 bp):
AAAGTATTATAAATTACATT
Found at i:75825758 original size:40 final size:40
Alignment explanation
Indices: 75825676--75825852 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
75825666 CGGATGATAA
* * * * *
75825676 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
75825716 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
75825756 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
75825796 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
75825836 -CTGGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
75825853 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 16 0.14
40 99 0.84
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:75828813 original size:9 final size:9
Alignment explanation
Indices: 75828799--75828830 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
75828789 TTTTTATGTT
75828799 TTATGTAAG
1 TTATGTAAG
*
75828808 TTATGTAAA
1 TTATGTAAG
75828817 TTATGTAAG
1 TTATGTAAG
75828826 TTATG
1 TTATG
75828831 AAATTTGAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:75828822 original size:18 final size:17
Alignment explanation
Indices: 75828799--75828835 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 17
75828789 TTTTTATGTT
75828799 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATG-AAA
75828817 TTATGTAAGTTATGAAA
1 TTATGTAAGTTATGAAA
75828834 TT
1 TT
75828836 TGAACTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (17 bp):
TTATGTAAGTTATGAAA
Found at i:75828907 original size:9 final size:9
Alignment explanation
Indices: 75828893--75829020 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
75828883 ATGTATTAGT
75828893 TAAGTTATG
1 TAAGTTATG
75828902 TAAGTTGTTATG
1 TAA---GTTATG
*
75828914 TACGTTATG
1 TAAGTTATG
*
75828923 TGAGTTATG
1 TAAGTTATG
*
75828932 TAAATTATG
1 TAAGTTATG
75828941 TAAGTTATG
1 TAAGTTATG
*
75828950 TGAGTTATG
1 TAAGTTATG
75828959 TAAGTTGTTATG
1 TAA---GTTATG
*
75828971 TAAATTATG
1 TAAGTTATG
*
75828980 TAAGTTATA
1 TAAGTTATG
*
75828989 TGAGTTATG
1 TAAGTTATG
75828998 TAAGTTATG
1 TAAGTTATG
* *
75829007 TAATTTATT
1 TAAGTTATG
75829016 TAAGT
1 TAAGT
75829021 AATGATCAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
12 17 0.18
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:75829020 original size:57 final size:57
Alignment explanation
Indices: 75828893--75829020 Score: 175
Period size: 57 Copynumber: 2.2 Consensus size: 57
75828883 ATGTATTAGT
** * *
75828893 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * *
75828950 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
75829007 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
75829021 AATGATCAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:75829874 original size:244 final size:244
Alignment explanation
Indices: 75829445--75829930 Score: 909
Period size: 244 Copynumber: 2.0 Consensus size: 244
75829435 TTGAAAATAA
*
75829445 ATTAAGGTTATATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAA
1 ATTAAGGTTATATAAATATTCAATAGTAAATGAGCACGATAGAACTTTTTTCAAGTCTTTTTGAA
75829510 TTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGAGAGGATCCATTATATCTTACAGCTC
66 TTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGAGAGGATCCATTATATCTTACAGCTC
* *
75829575 GATATAAGGCAACCCGTTAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAG
131 GATATAAGGCAACCCATCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAG
*
75829640 GTTGGAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGGT
196 GTTGGAGAGAAGGTCAACTATTGTTGTAATTTTAATGGACAAGCAAGGT
*
75829689 ATTAAGGTTATATAAATATTCAATAGTAAATGAGCACGATAGAACTTTTTTCATGTCTTTTTGAA
1 ATTAAGGTTATATAAATATTCAATAGTAAATGAGCACGATAGAACTTTTTTCAAGTCTTTTTGAA
* *
75829754 TTTTTTAAGATTCATCATATGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTC
66 TTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGAGAGGATCCATTATATCTTACAGCTC
75829819 GATATAAGGCAACCCATCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAG
131 GATATAAGGCAACCCATCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAG
75829884 GTTGGAGAGAAGGTCAACTATTGTTGTAATTTTAATGGACAAGCAAG
196 GTTGGAGAGAAGGTCAACTATTGTTGTAATTTTAATGGACAAGCAAG
75829931 CTACATGGTA
Statistics
Matches: 235, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
244 235 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.36
Consensus pattern (244 bp):
ATTAAGGTTATATAAATATTCAATAGTAAATGAGCACGATAGAACTTTTTTCAAGTCTTTTTGAA
TTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGAGAGGATCCATTATATCTTACAGCTC
GATATAAGGCAACCCATCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAG
GTTGGAGAGAAGGTCAACTATTGTTGTAATTTTAATGGACAAGCAAGGT
Found at i:75832961 original size:13 final size:13
Alignment explanation
Indices: 75832943--75832976 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
75832933 TTAGGGTTAG
75832943 GGGGAAAATTTTA
1 GGGGAAAATTTTA
*
75832956 GGGGAAAGTTTTA
1 GGGGAAAATTTTA
75832969 GGGGAAAA
1 GGGGAAAA
75832977 ACACTTAAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.24
Consensus pattern (13 bp):
GGGGAAAATTTTA
Found at i:75833517 original size:18 final size:18
Alignment explanation
Indices: 75833483--75833517 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
75833473 TTGATTTATT
*
75833483 TAATATATAATTTAAAAA
1 TAATATATAATTAAAAAA
75833501 TAATATA-AATTAAAAAA
1 TAATATATAATTAAAAAA
75833518 CAATCAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TAATATATAATTAAAAAA
Found at i:75833696 original size:26 final size:26
Alignment explanation
Indices: 75833631--75833705 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
75833621 AAGAATTAGA
* ** *
75833631 TAAAATATGAAATAATGAAAATTATT
1 TAAAATTTGAAATCTTGAAATTTATT
75833657 TAAAATTTGAAATCTTGAAATTTATT
1 TAAAATTTGAAATCTTGAAATTTATT
*
75833683 CT-AAATTTGAAATCTTTAAATTT
1 -TAAAATTTGAAATCTTGAAATTT
75833706 TTAAATTATT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 42 0.98
27 1 0.02
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.43
Consensus pattern (26 bp):
TAAAATTTGAAATCTTGAAATTTATT
Found at i:75834643 original size:31 final size:31
Alignment explanation
Indices: 75834602--75834665 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
75834592 CCTTTTCATA
*
75834602 TTTCACATTTCATAACACTGGGCGGAAGCCT
1 TTTCACATTTCATAACACTGGGCCGAAGCCT
* **
75834633 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCACATTTCATAACACTGGGCCGAAGCCT
75834664 TT
1 TT
75834666 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (31 bp):
TTTCACATTTCATAACACTGGGCCGAAGCCT
Found at i:75834964 original size:25 final size:24
Alignment explanation
Indices: 75834878--75834978 Score: 161
Period size: 23 Copynumber: 4.2 Consensus size: 24
75834868 GGCCTAACCT
75834878 CTTTTAATAACTGGGGCA-AAGCC
1 CTTTTAATAACTGGGGCATAAGCC
75834901 CTTTTAATAACT-GGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
75834924 CTTTTAATAACTGGGGCATAAGCT
1 CTTTTAATAACTGGGGCATAAGCC
*
75834948 CTTTCTCATAACTGGGGCATAAGCC
1 CTTT-TAATAACTGGGGCATAAGCC
75834973 CTTTTA
1 CTTTTA
75834979 CACTTCCTCC
Statistics
Matches: 71, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
22 5 0.07
23 29 0.41
24 15 0.21
25 22 0.31
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:75835054 original size:20 final size:20
Alignment explanation
Indices: 75835029--75835087 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
75835019 ATGAATACAT
75835029 CATATCATACATATCATGTG
1 CATATCATACATATCATGTG
*
75835049 CATATCATACATGTCATGTG
1 CATATCATACATATCATGTG
*
75835069 CATATCATACATACCATGT
1 CATATCATACATATCATGT
75835088 TTATCAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (20 bp):
CATATCATACATATCATGTG
Found at i:75842660 original size:30 final size:31
Alignment explanation
Indices: 75842624--75842686 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
75842614 CCTTTTCATA
75842624 TTTCATATTTCATAACACTGGG-CGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
75842654 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
75842685 TT
1 TT
75842687 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 20 0.67
31 10 0.33
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:75842964 original size:24 final size:24
Alignment explanation
Indices: 75842897--75842996 Score: 161
Period size: 23 Copynumber: 4.2 Consensus size: 24
75842887 GGCCTTTCCT
75842897 CTTTTAATAACTGGGGCA-AAGCC
1 CTTTTAATAACTGGGGCATAAGCC
75842920 CTTTTAATAACT-GGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
75842943 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
75842967 CTTTATCATAACTGGGG-ATAAGCC
1 CTTT-TAATAACTGGGGCATAAGCC
75842991 CTTTTA
1 CTTTTA
75842997 CACTTCCTCC
Statistics
Matches: 72, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
22 5 0.07
23 30 0.42
24 26 0.36
25 11 0.15
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:75842992 original size:48 final size:46
Alignment explanation
Indices: 75842897--75842996 Score: 164
Period size: 48 Copynumber: 2.1 Consensus size: 46
75842887 GGCCTTTCCT
75842897 CTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGCATAAGCC
1 CTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGCATAAGCC
* *
75842943 CTTTTAATAACTGGGGCATAAGCCCTTTATCATAACTGGGGATAAGCC
1 CTTTTAATAACTGGGGCA-AAGCCCTTT-TAATAACTGGGCATAAGCC
75842991 CTTTTA
1 CTTTTA
75842997 CACTTCCTCC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
46 18 0.36
47 9 0.18
48 23 0.46
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (46 bp):
CTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGCATAAGCC
Found at i:75843150 original size:25 final size:25
Alignment explanation
Indices: 75843108--75843155 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75843098 ATATTTAAAC
* * *
75843108 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
75843133 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
75843156 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:75844982 original size:46 final size:46
Alignment explanation
Indices: 75844932--75845107 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75844922 TATTTGGGCA
75844932 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
75844978 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
75845025 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
75845071 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75845108 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:75845087 original size:93 final size:93
Alignment explanation
Indices: 75844928--75845099 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75844918 TGGATATTTG
* *
75844928 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75844993 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75845021 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75845086 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75845100 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75848096 original size:15 final size:15
Alignment explanation
Indices: 75848057--75848135 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
75848047 GTATCTTGGG
*
75848057 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
75848072 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
75848087 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
75848101 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
75848116 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
75848130 TTTCTT
1 TTTCTT
75848136 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:75848120 original size:29 final size:29
Alignment explanation
Indices: 75848048--75848134 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
75848038 CATAGTATCG
* * * *
75848048 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
75848078 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
75848107 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
75848135 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:75850571 original size:46 final size:46
Alignment explanation
Indices: 75850518--75850693 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75850508 TATTTGGGCA
75850518 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
75850564 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
75850611 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
75850657 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75850694 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:75850673 original size:93 final size:93
Alignment explanation
Indices: 75850514--75850685 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75850504 GGGATATTTG
* *
75850514 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75850579 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75850607 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75850672 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75850686 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75853287 original size:21 final size:20
Alignment explanation
Indices: 75853244--75853304 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 20
75853234 AACCATATAA
* *
75853244 AACCCTAAACCCTAATCCAC
1 AACCCTAAACCTTAAACCAC
*
75853264 AACCTCTAAACCTTAAACCCC
1 AACC-CTAAACCTTAAACCAC
*
75853285 AACCCTTAAACCATAAACCA
1 AACCC-TAAACCTTAAACCA
75853305 AAATCTCAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 5 0.15
21 29 0.85
ACGTcount: A:0.43, C:0.41, G:0.00, T:0.16
Consensus pattern (20 bp):
AACCCTAAACCTTAAACCAC
Found at i:75853422 original size:14 final size:14
Alignment explanation
Indices: 75853412--75853460 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
75853402 CTTTAACCAT
*
75853412 TAACCCATAACCCA
1 TAACCCATAATCCA
* * *
75853426 TGACCCTTAATCCT
1 TAACCCATAATCCA
75853440 TAAACCCATAATCCA
1 T-AACCCATAATCCA
75853455 TAACCC
1 TAACCC
75853461 TTAACCTTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.37, C:0.39, G:0.02, T:0.22
Consensus pattern (14 bp):
TAACCCATAATCCA
Found at i:75853435 original size:28 final size:26
Alignment explanation
Indices: 75853381--75853468 Score: 88
Period size: 29 Copynumber: 3.2 Consensus size: 26
75853371 TAATTAAACC
*
75853381 CCTTAACCCCTAACCC-TATCCCTTTAA
1 CCTTAACCCATAACCCATA-CCC-TTAA
75853408 CCATTAACCCATAACCCATGACCCTTAA
1 CC-TTAACCCATAACCCAT-ACCCTTAA
*
75853436 TCCTTAAACCCATAATCCATAACCCTTAA
1 -CCTT-AACCCATAACCCAT-ACCCTTAA
75853465 CCTT
1 CCTT
75853469 TTACCCACTA
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
27 2 0.04
28 23 0.43
29 27 0.51
30 1 0.02
ACGTcount: A:0.32, C:0.40, G:0.01, T:0.27
Consensus pattern (26 bp):
CCTTAACCCATAACCCATACCCTTAA
Found at i:75853480 original size:29 final size:28
Alignment explanation
Indices: 75853404--75853482 Score: 95
Period size: 29 Copynumber: 2.8 Consensus size: 28
75853394 CCCTATCCCT
* * *
75853404 TTAACCATTAACCCATAACCCATGACCC
1 TTAACCTTTAACCCATAATCCATAACCC
*
75853432 TTAATCCTTAAACCCATAATCCATAACCC
1 TTAA-CCTTTAACCCATAATCCATAACCC
*
75853461 TTAACCTTTTACCCACTAATCC
1 TTAACCTTTAACCCA-TAATCC
75853483 CTAAAACTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
28 13 0.30
29 30 0.70
ACGTcount: A:0.34, C:0.37, G:0.01, T:0.28
Consensus pattern (28 bp):
TTAACCTTTAACCCATAATCCATAACCC
Found at i:75855231 original size:46 final size:46
Alignment explanation
Indices: 75855181--75855356 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75855171 TATTTGGGCA
75855181 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
75855227 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
75855274 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
75855320 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75855357 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:75855336 original size:93 final size:93
Alignment explanation
Indices: 75855177--75855348 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75855167 TGGATATTTG
* *
75855177 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75855242 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75855270 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75855335 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75855349 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75858318 original size:15 final size:15
Alignment explanation
Indices: 75858298--75858366 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
75858288 GTATCTTGGG
75858298 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
75858313 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
75858328 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
75858343 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
75858358 TTTCTTTAT
1 TTTCTTTAT
75858367 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:75858367 original size:30 final size:30
Alignment explanation
Indices: 75858289--75858376 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
75858279 CATAGTATCG
* * * *
75858289 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
75858319 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
75858349 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
75858377 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:75860815 original size:46 final size:46
Alignment explanation
Indices: 75860762--75860937 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75860752 TATTTGGGCA
75860762 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
75860808 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
75860855 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
75860901 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75860938 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:75860917 original size:93 final size:93
Alignment explanation
Indices: 75860758--75860929 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75860748 GGGATATTTG
* *
75860758 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75860823 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75860851 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75860916 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75860930 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75863927 original size:15 final size:15
Alignment explanation
Indices: 75863888--75863966 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
75863878 GTATCTTGGG
*
75863888 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
75863903 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
75863918 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
75863932 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
75863947 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
75863961 TTTCTT
1 TTTCTT
75863967 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:75863951 original size:29 final size:29
Alignment explanation
Indices: 75863879--75863965 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
75863869 CATAGTATCG
* * * *
75863879 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
75863909 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
75863938 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
75863966 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:75866400 original size:46 final size:46
Alignment explanation
Indices: 75866347--75866522 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
75866337 TATTTGGGCA
75866347 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
75866393 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
75866440 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
75866486 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75866523 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:75866502 original size:93 final size:93
Alignment explanation
Indices: 75866343--75866514 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
75866333 GGGATATTTG
* *
75866343 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75866408 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
75866436 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
75866501 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
75866515 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:75869157 original size:21 final size:22
Alignment explanation
Indices: 75869133--75869188 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
75869123 CCCCAACCCT
*
75869133 TAAACCATAAACCAAAATCTC-
1 TAAACCATAAACCAAAAGCTCA
* * **
75869154 TAAACCTTAAAACATTAGCTCA
1 TAAACCATAAACCAAAAGCTCA
75869176 TAAACCATAAACC
1 TAAACCATAAACC
75869189 CCTTTACCAT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
21 16 0.59
22 11 0.41
ACGTcount: A:0.50, C:0.27, G:0.02, T:0.21
Consensus pattern (22 bp):
TAAACCATAAACCAAAAGCTCA
Found at i:75869289 original size:29 final size:28
Alignment explanation
Indices: 75869223--75869312 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 28
75869213 TAATTAAACC
* * *
75869223 CCTT-AACCCCTAACCCCTATCCCTTTAA
1 CCTTAAACCCATAACCCATAACCC-TTAA
*
75869251 CCATTAAACCCATAACCCATGACCCTTAA
1 CC-TTAAACCCATAACCCATAACCCTTAA
*
75869280 TCCTTAAACCCATAATCCATAACCCTTAA
1 -CCTTAAACCCATAACCCATAACCCTTAA
75869309 CCTT
1 CCTT
75869313 TACCCACTAA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
28 6 0.11
29 30 0.57
30 17 0.32
ACGTcount: A:0.32, C:0.40, G:0.01, T:0.27
Consensus pattern (28 bp):
CCTTAAACCCATAACCCATAACCCTTAA
Found at i:75871072 original size:28 final size:28
Alignment explanation
Indices: 75870974--75871072 Score: 110
Period size: 28 Copynumber: 3.5 Consensus size: 28
75870964 TCACAAATTG
* * *
75870974 GCACTAAGTGTGCGGGTTCAAATGGTATA
1 GCACTAAGTGTGCGAGTTCGAAT-ATATA
* * *
75871003 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCGAATATATA
*
75871031 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTCGAATATAT-A
75871059 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75871073 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
27 1 0.02
28 41 0.68
29 18 0.30
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTCGAATATATA
Found at i:75878656 original size:28 final size:27
Alignment explanation
Indices: 75878624--75878721 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 27
75878614 TCACAAATTG
*
75878624 GCACTAAGTGTGCGGGTTCAAATGTATA
1 GCACTAAGTGTGCGAGTTCAAAT-TATA
* ** *
75878652 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCAAAT-TATA
75878680 GCACTAAGTGTGCGAGTTCAACTATTA-A
1 GCACTAAGTGTGCGAGTTCAA--ATTATA
75878708 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75878722 GGCTTATTAC
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
28 55 0.95
29 2 0.03
30 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTCAAATTATA
Found at i:75883769 original size:31 final size:31
Alignment explanation
Indices: 75883733--75883794 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
75883723 TTTTCATATC
75883733 TCATATTTCATAACACTGGGCC-ATAGCCTTT
1 TCATATTTCATAACACTGGGCCGA-AGCCTTT
**
75883764 TCATATTTCATATTACTGGGCCGAAGCCTTT
1 TCATATTTCATAACACTGGGCCGAAGCCTTT
75883795 ACTGTAAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 27 0.96
32 1 0.04
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (31 bp):
TCATATTTCATAACACTGGGCCGAAGCCTTT
Found at i:75884064 original size:23 final size:23
Alignment explanation
Indices: 75884009--75884152 Score: 227
Period size: 23 Copynumber: 6.1 Consensus size: 23
75883999 CCTAGCATCT
*
75884009 TTTAACAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
75884031 TTTTTTAATAACTGGGGCATAAGCCC
1 ---TTTAATAACTGGGGCATAAGCCC
75884057 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
75884080 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
75884104 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
75884127 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
75884150 TTT
1 TTT
75884153 TGCACTTCCT
Statistics
Matches: 115, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
23 71 0.62
24 23 0.20
25 15 0.13
26 6 0.05
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:75884094 original size:47 final size:47
Alignment explanation
Indices: 75884009--75884152 Score: 247
Period size: 47 Copynumber: 3.1 Consensus size: 47
75883999 CCTAGCATCT
*
75884009 TTTAACAACTGGGGCA-AAGCCCTTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC--TTTTAATAACTGGGGCATAAGCCC
75884057 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
75884104 TTTAATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
75884150 TTT
1 TTT
75884153 TGCACTTCCT
Statistics
Matches: 94, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
46 22 0.23
47 51 0.54
48 15 0.16
49 6 0.06
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:75884120 original size:70 final size:70
Alignment explanation
Indices: 75884007--75884153 Score: 242
Period size: 70 Copynumber: 2.1 Consensus size: 70
75883997 GGCCTAGCAT
75884007 CTTTTAACAACTGGGGCAAAGCCCTTTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGC
1 CTTTTAACAACTGGGGCAAAGCCC--TTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGC
75884072 ATAAGCC
64 ATAAGCC
* *
75884079 CTTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTATAACTGGGGCA
1 CTTTTAACAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCA
75884143 TAAGCC
65 TAAGCC
75884149 CTTTT
1 CTTTT
75884154 GCACTTCCTC
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
70 49 0.68
72 17 0.24
73 6 0.08
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (70 bp):
CTTTTAACAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCAT
AAGCC
Found at i:75884231 original size:20 final size:20
Alignment explanation
Indices: 75884206--75884268 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
75884196 GAACATCTCG
* *
75884206 TGTGCATGTCATTCATATCA
1 TGTGCATATCATACATATCA
*
75884226 TGTGCATATCATACATTTCA
1 TGTGCATATCATACATATCA
*
75884246 TGTGCATATCATACATACCA
1 TGTGCATATCATACATATCA
75884266 TGT
1 TGT
75884269 TTATCAAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.38
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:75886483 original size:46 final size:46
Alignment explanation
Indices: 75886433--75886603 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
75886423 TGGTTGAGCA
75886433 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75886479 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
* *
75886523 GCATCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TC--CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75886571 CCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75886604 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 14 0.13
46 74 0.70
47 2 0.02
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75886592 original size:92 final size:92
Alignment explanation
Indices: 75886430--75886598 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
75886420 GGATGGTTGA
* *
75886430 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75886495 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGT-CGAGTTCGTGAAATGTAACTAG
*
75886523 GCAT-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75886587 TGAGTCGAGTTC
66 TGAGTCGAGTTC
75886599 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 7 0.10
92 62 0.85
93 4 0.05
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAAATGTAACTAG
Found at i:75894045 original size:46 final size:46
Alignment explanation
Indices: 75893995--75894167 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
75893985 TGGTTGAGCA
75893995 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75894041 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
75894086 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75894134 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75894168 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.58
47 29 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75894151 original size:93 final size:93
Alignment explanation
Indices: 75893992--75894162 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
75893982 GGATGGTTGA
***
75893992 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
75894057 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
75894085 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
75894150 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75894163 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:75901925 original size:7 final size:7
Alignment explanation
Indices: 75901913--75901938 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
75901903 TTTCAATTTC
75901913 ATATTGA
1 ATATTGA
75901920 ATATTGA
1 ATATTGA
75901927 ATATTGA
1 ATATTGA
75901934 ATATT
1 ATATT
75901939 CAAATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (7 bp):
ATATTGA
Found at i:75905741 original size:39 final size:39
Alignment explanation
Indices: 75905682--75905777 Score: 147
Period size: 39 Copynumber: 2.4 Consensus size: 39
75905672 TAGAATCGAA
*
75905682 ATAGTAAAACTACTCTTATTCACCCTCTACTTCCTATAAT
1 ATAG-AAAACTACTCCTATTCACCCTCTACTTCCTATAAT
*
75905722 ATAGAAAACTATTCCTATTCACCCTCTACTTCCTATAAT
1 ATAGAAAACTACTCCTATTCACCCTCTACTTCCTATAAT
* *
75905761 TTAGAGAACTACTCCTA
1 ATAGAAAACTACTCCTA
75905778 AAATAAATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 47 0.92
40 4 0.08
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.35
Consensus pattern (39 bp):
ATAGAAAACTACTCCTATTCACCCTCTACTTCCTATAAT
Found at i:75909989 original size:21 final size:20
Alignment explanation
Indices: 75909955--75909993 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
75909945 ATGTGCAATT
75909955 TGAATTTTCTTGATAGATTA
1 TGAATTTTCTTGATAGATTA
*
75909975 TGAATGTTTGTTGATAGAT
1 TGAAT-TTTCTTGATAGAT
75909994 ATATAGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.49
Consensus pattern (20 bp):
TGAATTTTCTTGATAGATTA
Found at i:75911180 original size:12 final size:12
Alignment explanation
Indices: 75911151--75911180 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
75911141 ATTTTGAGTC
75911151 ATTTTGGTAATG
1 ATTTTGGTAATG
75911163 -TTTTGGTAATG
1 ATTTTGGTAATG
75911174 ATTTTGG
1 ATTTTGG
75911181 CCATTTGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (12 bp):
ATTTTGGTAATG
Found at i:75912615 original size:22 final size:22
Alignment explanation
Indices: 75912575--75912616 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
75912565 AGGACCAATT
*
75912575 TGTAAAAATGTTATAAAATGTG
1 TGTAAAAATGTGATAAAATGTG
* *
75912597 TGTAAAAGTGTGATTAAATG
1 TGTAAAAATGTGATAAAATG
75912617 AAAAATGTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (22 bp):
TGTAAAAATGTGATAAAATGTG
Found at i:75913137 original size:42 final size:42
Alignment explanation
Indices: 75913077--75913238 Score: 193
Period size: 42 Copynumber: 3.8 Consensus size: 42
75913067 AGGGTTACTA
* *
75913077 AGACTACGTGTAAGACCATATCTGGGATATGGCATC-AGTATG
1 AGACTTCGTGTAAGACCATATCTAGGATATGGCATCGA-TATG
* * *
75913119 AGACTTCGTGTAAAACCATGTCTAAGATATGGCATCGATATG
1 AGACTTCGTGTAAGACCATATCTAGGATATGGCATCGATATG
* * *
75913161 AGACTTCGTGTAAGACCATAGCTAGGCTATTAGCATCGATATG
1 AGACTTCGTGTAAGACCATATCTAGGATA-TGGCATCGATATG
* *
75913204 AGA-TTACATGTAAGACCATATCTGGGATATGGCAT
1 AGACTT-CGTGTAAGACCATATCTAGGATATGGCAT
75913239 TGGTATCGTA
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 66 0.65
43 35 0.35
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (42 bp):
AGACTTCGTGTAAGACCATATCTAGGATATGGCATCGATATG
Found at i:75913222 original size:85 final size:84
Alignment explanation
Indices: 75913077--75913238 Score: 193
Period size: 85 Copynumber: 1.9 Consensus size: 84
75913067 AGGGTTACTA
* * * * *
75913077 AGACTACGTGTAAGACCATATCTGGGATATGGCATCAGTATGAGACTTCGTGTAAAACCATGTCT
1 AGACTACGTGTAAGACCATAGCTAGGATATAGCATCAGTATGAGACTTCATGTAAAACCATATCT
75913142 AAGATATGGCATCGATATG
66 AAGATATGGCATCGATATG
* * *
75913161 AGACTTCGTGTAAGACCATAGCTAGGCTATTAGCATC-GATATGAGA-TTACATGTAAGACCATA
1 AGACTACGTGTAAGACCATAGCTAGGATA-TAGCATCAG-TATGAGACTT-CATGTAAAACCATA
**
75913224 TCTGGGATATGGCAT
63 TCTAAGATATGGCAT
75913239 TGGTATCGTA
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
84 28 0.43
85 37 0.57
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (84 bp):
AGACTACGTGTAAGACCATAGCTAGGATATAGCATCAGTATGAGACTTCATGTAAAACCATATCT
AAGATATGGCATCGATATG
Found at i:75920188 original size:21 final size:20
Alignment explanation
Indices: 75920160--75920198 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
75920150 ATATGTACTT
75920160 TGAAGCTTCTTGATAGATTA
1 TGAAGCTTCTTGATAGATTA
*
75920180 TGAATGCTTGTTGATAGAT
1 TGAA-GCTTCTTGATAGAT
75920199 ATACAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.41
Consensus pattern (20 bp):
TGAAGCTTCTTGATAGATTA
Found at i:75922061 original size:45 final size:45
Alignment explanation
Indices: 75922010--75922146 Score: 256
Period size: 45 Copynumber: 3.0 Consensus size: 45
75922000 TGTAACCTAA
*
75922010 GTCAGAGAGTTACACGGGGTCAGACACAGGCTGGGACATGGCCAT
1 GTCAGAGAGTTACACGGGGTCGGACACAGGCTGGGACATGGCCAT
*
75922055 GTCAGAGAGTTACACGGGGTCGGACACGGGCTGGGACATGGCCAT
1 GTCAGAGAGTTACACGGGGTCGGACACAGGCTGGGACATGGCCAT
75922100 GTCAGAGAGTTACACGGGGTCGGACACAGGCTGGGACATGGCCAT
1 GTCAGAGAGTTACACGGGGTCGGACACAGGCTGGGACATGGCCAT
75922145 GT
1 GT
75922147 GCTCCCATTT
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 89 1.00
ACGTcount: A:0.24, C:0.22, G:0.38, T:0.16
Consensus pattern (45 bp):
GTCAGAGAGTTACACGGGGTCGGACACAGGCTGGGACATGGCCAT
Found at i:75923954 original size:40 final size:40
Alignment explanation
Indices: 75923892--75924054 Score: 224
Period size: 40 Copynumber: 4.1 Consensus size: 40
75923882 GGGATTTAGT
* *
75923892 CGGATATAGCT-ACTCACTCAAATGCCTTCAGGACTTAGCC
1 CGGATATAG-TAACTCACACAAATGCCTTCGGGACTTAGCC
* *
75923932 CGGATATAGTAACTCGCACAAATGCCTTCGGGACGTAGCC
1 CGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
75923972 CGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
* *
75924012 CGGA-ATTAGTCACT-AGCACAAATGCCTTTGGGACTTAGCC
1 CGGATA-TAGTAACTCA-CACAAATGCCTTCGGGACTTAGCC
75924052 CGG
1 CGG
75924055 TTATCATCCG
Statistics
Matches: 112, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.03
40 109 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCC
Found at i:75928244 original size:47 final size:47
Alignment explanation
Indices: 75928191--75928280 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 47
75928181 TAACAAACAC
75928191 ATCATGGTACCGTTCAATCATACCTTGTTACTTTAAAGAAACTGTGA
1 ATCATGGTACCGTTCAATCATACCTTGTTACTTTAAAGAAACTGTGA
*
75928238 ATCATGGTACCGTTCAATCATACCTTGTTGCTTTAAAGAAACT
1 ATCATGGTACCGTTCAATCATACCTTGTTACTTTAAAGAAACT
75928281 ATGTCTGCCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (47 bp):
ATCATGGTACCGTTCAATCATACCTTGTTACTTTAAAGAAACTGTGA
Found at i:75932278 original size:28 final size:29
Alignment explanation
Indices: 75932236--75932293 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
75932226 TTCCTGAGCC
75932236 TAGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
75932265 TAGGG-AAAATTGTAATTTTGCCAAAGTT
1 TAGGGCAAAAGTGTAAATATGCAAAAGTT
75932293 T
1 T
75932294 GAGTTAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 20 0.80
29 5 0.20
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (29 bp):
TAGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:75933069 original size:68 final size:64
Alignment explanation
Indices: 75932959--75933212 Score: 212
Period size: 68 Copynumber: 3.9 Consensus size: 64
75932949 ATACAAATAG
* ** * * * *
75932959 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGAC
1 TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTAC--GAG
75933022 ATTA
62 A-TA
* *
75933026 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * *
75933091 TATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
75933156 TA
63 TA
* * * *
75933158 AAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCT
1 TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCT
75933213 GAACTATATG
Statistics
Matches: 154, Mismatches: 25, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 20 0.13
64 25 0.16
65 3 0.02
66 23 0.15
67 35 0.23
68 46 0.30
69 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:75933109 original size:64 final size:64
Alignment explanation
Indices: 75933028--75933212 Score: 205
Period size: 67 Copynumber: 2.9 Consensus size: 64
75933018 AGACATTATG
* * *
75933028 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
75933092 ATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
75933157 AA
63 AA
* * *
75933159 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCT
75933213 GAACTATATG
Statistics
Matches: 100, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Done.