Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 250 of 335
Found at i:75945412 original size:7 final size:6
Alignment explanation
Indices: 75945379--75945403 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
75945369 TTTAGCAAAA
75945379 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
75945404 TACTTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:75946211 original size:19 final size:20
Alignment explanation
Indices: 75946177--75946214 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
75946167 CAATTAATTA
75946177 AAATTTATACTTTTTTTAAG
1 AAATTTATACTTTTTTTAAG
75946197 AAATTTATA-TTTTTTTAA
1 AAATTTATACTTTTTTTAA
75946215 ATTTTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (20 bp):
AAATTTATACTTTTTTTAAG
Found at i:75948648 original size:38 final size:38
Alignment explanation
Indices: 75948593--75948672 Score: 153
Period size: 38 Copynumber: 2.1 Consensus size: 38
75948583 AGTTGTGTTG
75948593 TCCA-GGCAACGAAGAAGGTAAGAAGGCGGCTAGATTA
1 TCCACGGCAACGAAGAAGGTAAGAAGGCGGCTAGATTA
75948630 TCCACGGCAACGAAGAAGGTAAGAAGGCGGCTAGATTA
1 TCCACGGCAACGAAGAAGGTAAGAAGGCGGCTAGATTA
75948668 TCCAC
1 TCCAC
75948673 TGAAAACAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 4 0.10
38 38 0.90
ACGTcount: A:0.36, C:0.20, G:0.30, T:0.14
Consensus pattern (38 bp):
TCCACGGCAACGAAGAAGGTAAGAAGGCGGCTAGATTA
Found at i:75951374 original size:41 final size:40
Alignment explanation
Indices: 75951307--75951390 Score: 91
Period size: 41 Copynumber: 2.1 Consensus size: 40
75951297 ATATTGATTA
75951307 TGAATATATGTGTATTGAGAAAAATATGATTATT-ATAAAAT
1 TGAATATATGTGTATTGAGAAAAATAT-A-TATTCATAAAAT
* * * *
75951348 TGAATATATGTTTATATGTG-ATAATATATATTCATGAAAT
1 TGAATATATGTGTAT-TGAGAAAAATATATATTCATAAAAT
75951388 TGA
1 TGA
75951391 GACATTGGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
39 4 0.11
40 10 0.27
41 20 0.54
42 3 0.08
ACGTcount: A:0.43, C:0.01, G:0.14, T:0.42
Consensus pattern (40 bp):
TGAATATATGTGTATTGAGAAAAATATATATTCATAAAAT
Found at i:75955714 original size:2 final size:2
Alignment explanation
Indices: 75955707--75955731 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
75955697 CATCTATGTC
75955707 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
75955732 GTGTGTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:75957897 original size:2 final size:2
Alignment explanation
Indices: 75957886--75957920 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
75957876 TATTAATTAT
75957886 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
75957921 AAGAGAGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:75961156 original size:27 final size:27
Alignment explanation
Indices: 75961101--75961173 Score: 76
Period size: 27 Copynumber: 2.6 Consensus size: 27
75961091 GAATACCCAA
*
75961101 CCCAAACACACCCGGAATATTATAAATCC-
1 CCCAAACACA-CC--AATATAATAAATCCG
* *
75961130 TCCATAACACACCAATATAATATATCCG
1 CCCA-AACACACCAATATAATAAATCCG
75961158 CCCAAACACACCAATA
1 CCCAAACACACCAATA
75961174 AGGCATTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
27 24 0.63
28 3 0.08
29 5 0.13
30 6 0.16
ACGTcount: A:0.44, C:0.34, G:0.04, T:0.18
Consensus pattern (27 bp):
CCCAAACACACCAATATAATAAATCCG
Found at i:75962393 original size:31 final size:32
Alignment explanation
Indices: 75962358--75962418 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
75962348 AACATCTAAT
*
75962358 AAATATCTTTT-ACTAATTAATA-ATAAATATA
1 AAATATATTTTCACTAATT-ATACATAAATATA
75962389 AAATATATTTTCACTAATTATACATAAATA
1 AAATATATTTTCACTAATTATACATAAATA
75962419 ATACAAATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 13 0.48
32 14 0.52
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (32 bp):
AAATATATTTTCACTAATTATACATAAATATA
Found at i:75962503 original size:3 final size:3
Alignment explanation
Indices: 75962493--75962537 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
75962483 TTAATTTTTT
75962493 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
75962538 GTTATTATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:75966396 original size:77 final size:77
Alignment explanation
Indices: 75966301--75966490 Score: 335
Period size: 77 Copynumber: 2.5 Consensus size: 77
75966291 GAATGTTCGA
75966301 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCA
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCA
75966366 ATTGTGCGAGCT
66 ATTGTGCGAGCT
75966378 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCA
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCA
*
75966443 ATTGTGCGAGTT
66 ATTGTGCGAGCT
* * *
75966455 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 ATGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
75966491 GGTTACCATA
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
77 91 0.84
78 17 0.16
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.22
Consensus pattern (77 bp):
ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGCT
Found at i:75966400 original size:39 final size:39
Alignment explanation
Indices: 75966301--75966490 Score: 321
Period size: 38 Copynumber: 4.9 Consensus size: 39
75966291 GAATGTTCGA
75966301 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
75966340 ATGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
75966378 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
*
75966417 ATGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* * *
75966455 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 ATGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
75966491 GGTTACCATA
Statistics
Matches: 144, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
38 74 0.51
39 53 0.37
40 17 0.12
ACGTcount: A:0.25, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
Found at i:75974398 original size:39 final size:39
Alignment explanation
Indices: 75974344--75974535 Score: 312
Period size: 39 Copynumber: 4.9 Consensus size: 39
75974334 GAATGTTCGA
75974344 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
*
75974383 ATGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
*
75974422 ATGATATCCAGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* *
75974461 ATGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* * *
75974500 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 ATGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
75974536 GGTTACCATA
Statistics
Matches: 142, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 125 0.88
40 17 0.12
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.21
Consensus pattern (39 bp):
ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
Found at i:75976533 original size:15 final size:13
Alignment explanation
Indices: 75976501--75976533 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
75976491 ACACACACGT
75976501 CTGTGTGACTAGC
1 CTGTGTGACTAGC
75976514 CTGTGTGACTAGC
1 CTGTGTGACTAGC
75976527 CTGTGTG
1 CTGTGTG
75976534 CCCTAAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.12, C:0.21, G:0.33, T:0.33
Consensus pattern (13 bp):
CTGTGTGACTAGC
Found at i:75977699 original size:48 final size:48
Alignment explanation
Indices: 75977654--75977829 Score: 219
Period size: 48 Copynumber: 3.7 Consensus size: 48
75977644 ACTAAGTGTC
* * *
75977654 AATATCATGACCTGAAGCCAACTCAATGTATCTCGCACCAGAAGTGCT
1 AATATCATGACCCGAAGCCAAATCAATGTATCTTGCACCAGAAGTGCT
* * * *
75977702 AATACCATGGCCCGAAGCCGAATCAATGTATCTTGCACCCGAAGTGCT
1 AATATCATGACCCGAAGCCAAATCAATGTATCTTGCACCAGAAGTGCT
* * **
75977750 AATATTATGGCCCGAAGCCAAATCAATGTATCTTGCACTTGAAGTGCT
1 AATATCATGACCCGAAGCCAAATCAATGTATCTTGCACCAGAAGTGCT
* *
75977798 AATATCAT-AGCCTGAAACCAAATCAATGTATC
1 AATATCATGA-CCCGAAGCCAAATCAATGTATC
75977830 CCGTAATGAC
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (48 bp):
AATATCATGACCCGAAGCCAAATCAATGTATCTTGCACCAGAAGTGCT
Found at i:75979406 original size:28 final size:27
Alignment explanation
Indices: 75979374--75979471 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 27
75979364 TCACAAATTG
*
75979374 GCACTAAGTGTGCGGGTTCAAATGTATA
1 GCACTAAGTGTGCGAGTTCAAAT-TATA
* ** *
75979402 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCAAAT-TATA
*
75979430 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTC-A-AATTATA
75979458 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75979472 GGCTTATTAC
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
28 54 0.95
29 2 0.04
30 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTCAAATTATA
Found at i:75987052 original size:28 final size:27
Alignment explanation
Indices: 75987020--75987117 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 27
75987010 TCACAAATTG
*
75987020 GCACTAAGTGTGCGGGTTCAAATGTATA
1 GCACTAAGTGTGCGAGTTCAAAT-TATA
* ** *
75987048 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTCAAAT-TATA
*
75987076 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTC-A-AATTATA
75987104 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75987118 GGCTTATTAC
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
28 54 0.95
29 2 0.04
30 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTCAAATTATA
Found at i:75989585 original size:24 final size:24
Alignment explanation
Indices: 75989557--75989608 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
75989547 TTAGTAGGTC
* *
75989557 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
75989581 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
75989605 AAAT
1 AAAT
75989609 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:75993217 original size:40 final size:40
Alignment explanation
Indices: 75993159--75993339 Score: 229
Period size: 40 Copynumber: 4.5 Consensus size: 40
75993149 TGAATGATAC
* * * *
75993159 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTAAAT
* *
75993199 CCAGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTAAAT
75993239 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTAAAT
* * ****
75993279 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTCACCAAAT
1 CCGGGCTAAGACCCGAAGGC-ATTCATGCGAGTTGTTAAAT
*
75993319 CCGGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
75993340 ATTGTGCTTG
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 121 0.97
41 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTAAAT
Found at i:75993361 original size:80 final size:80
Alignment explanation
Indices: 75993159--75993362 Score: 250
Period size: 80 Copynumber: 2.5 Consensus size: 80
75993149 TGAATGATAC
* * *
75993159 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTTGTTATATCCAGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCG
* ****
75993224 TGCGAGTTGTTAAAT
66 TGCAAGTCACCAAAT
* *
75993239 CCGGGCTAAGACCCGAAGGC-ATTCATGCGAGTTGTTAAATCCGGGCTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCAATT-ATGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGC-ATT
75993303 -GTGCAAGTCACCAAAT
64 CGTGCAAGTCACCAAAT
* * * *
75993319 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTAGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCAATTATGCTAGTTGTTATATCCGG
75993363 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
79 2 0.02
80 97 0.92
81 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTATGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTCACCAAAT
Found at i:76001193 original size:40 final size:40
Alignment explanation
Indices: 76001138--76001301 Score: 168
Period size: 40 Copynumber: 4.1 Consensus size: 40
76001128 TGAATGATAC
* * * *
76001138 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTAAAT
*
76001178 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTTGTTAAAT
* * ****
76001218 CCGGGCTAAGACCCAAAGGCAATTGTGCAAGTCACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTAAAT
* * * * *
76001258 CCGGGTTAAGACCTGAAGGCAATTGTGCTTGTAGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTAAAT
76001298 CCGG
1 CCGG
76001302 TTAAATCCCG
Statistics
Matches: 101, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 2 0.02
40 96 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTAAAT
Found at i:76002723 original size:24 final size:24
Alignment explanation
Indices: 76002695--76002746 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
76002685 TTAGTAGGTC
* *
76002695 AAATAAACTATGCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
76002719 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
76002743 AAAT
1 AAAT
76002747 CTTTTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:76006819 original size:21 final size:21
Alignment explanation
Indices: 76006793--76006834 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
76006783 ATCCGGAAGG
76006793 AGCATCTCAAGAAGTTTCTAT
1 AGCATCTCAAGAAGTTTCTAT
76006814 AGCATCTCAAGAAGTTTCTAT
1 AGCATCTCAAGAAGTTTCTAT
76006835 CTTAAGAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (21 bp):
AGCATCTCAAGAAGTTTCTAT
Found at i:76009071 original size:11 final size:11
Alignment explanation
Indices: 76009055--76009086 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
76009045 TCAACACTTC
76009055 TCCCCCACCAT
1 TCCCCCACCAT
76009066 TCCCCCACCAT
1 TCCCCCACCAT
*
76009077 TCCACCACCA
1 TCCCCCACCA
76009087 CTTGCCACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.22, C:0.62, G:0.00, T:0.16
Consensus pattern (11 bp):
TCCCCCACCAT
Found at i:76009201 original size:14 final size:14
Alignment explanation
Indices: 76009182--76009245 Score: 58
Period size: 14 Copynumber: 4.6 Consensus size: 14
76009172 ATATTATTTA
76009182 TTTCTTTTCTCTCT
1 TTTCTTTTCTCTCT
*
76009196 TTTCTTTCCTCTCT
1 TTTCTTTTCTCTCT
* *
76009210 TTTATTTTATC-CT
1 TTTCTTTTCTCTCT
* *
76009223 TTTCATTTCATTTCT
1 TTTCTTTTC-TCTCT
*
76009238 CTTCTTTT
1 TTTCTTTT
76009246 GATTTAAATA
Statistics
Matches: 38, Mismatches: 10, Indels: 3
0.75 0.20 0.06
Matches are distributed among these distances:
13 8 0.21
14 22 0.58
15 8 0.21
ACGTcount: A:0.06, C:0.25, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTCTTTTCTCTCT
Found at i:76009245 original size:28 final size:28
Alignment explanation
Indices: 76009183--76009245 Score: 65
Period size: 28 Copynumber: 2.2 Consensus size: 28
76009173 TATTATTTAT
* * *
76009183 TTCTTTTCTCTCTTTTCTTTCCTCTCTT
1 TTCTTTTATCTCTTTTCTTTCATCTCTC
* *
76009211 TTATTTTATC-CTTTTCATTTCATTTCTC
1 TTCTTTTATCTCTTTTC-TTTCATCTCTC
76009239 TTCTTTT
1 TTCTTTT
76009246 GATTTAAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.06, C:0.25, G:0.00, T:0.68
Consensus pattern (28 bp):
TTCTTTTATCTCTTTTCTTTCATCTCTC
Found at i:76015944 original size:24 final size:24
Alignment explanation
Indices: 76015912--76015958 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
76015902 AAAAAACTTT
76015912 TTACTTTAGTTA-TTGTAGTTACTC
1 TTACTTTAGTTACTT-TAGTTACTC
76015936 TTACTTTAGTTACTTTAGTTACT
1 TTACTTTAGTTACTTTAGTTACT
76015959 TTAGTCACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.21, C:0.13, G:0.11, T:0.55
Consensus pattern (24 bp):
TTACTTTAGTTACTTTAGTTACTC
Found at i:76015948 original size:9 final size:9
Alignment explanation
Indices: 76015912--76015972 Score: 67
Period size: 9 Copynumber: 7.1 Consensus size: 9
76015902 AAAAAACTTT
76015912 TTACTTTAG
1 TTACTTTAG
76015921 TTA-TTGTAG
1 TTACTT-TAG
*
76015930 TTAC--T-C
1 TTACTTTAG
76015936 TTACTTTAG
1 TTACTTTAG
76015945 TTACTTTAG
1 TTACTTTAG
76015954 TTACTTTAG
1 TTACTTTAG
*
76015963 TCACTTTAG
1 TTACTTTAG
76015972 T
1 T
76015973 AAAAATGTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
6 4 0.09
7 1 0.02
8 3 0.07
9 36 0.82
ACGTcount: A:0.21, C:0.13, G:0.11, T:0.54
Consensus pattern (9 bp):
TTACTTTAG
Found at i:76017557 original size:17 final size:17
Alignment explanation
Indices: 76017535--76017571 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
76017525 TTTGGTTGTC
76017535 CTTCCTTTTGTTTTTTT
1 CTTCCTTTTGTTTTTTT
76017552 CTTCCTTTTGTTTTTTT
1 CTTCCTTTTGTTTTTTT
76017569 CTT
1 CTT
76017572 TCTCTTTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.00, C:0.19, G:0.05, T:0.76
Consensus pattern (17 bp):
CTTCCTTTTGTTTTTTT
Found at i:76022021 original size:40 final size:40
Alignment explanation
Indices: 76021942--76022197 Score: 346
Period size: 40 Copynumber: 6.5 Consensus size: 40
76021932 CAACCAAGTA
** *
76021942 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
76021980 CCTTCGGGACTTGGCCC-AATTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCACAAATG
*
76022020 CCTTCGGGACTTAGCCTGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
76022060 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76022100 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
76022140 CCTTCGGGACTT-GCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
76022179 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
76022198 TTATCATCCA
Statistics
Matches: 197, Mismatches: 12, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
38 14 0.07
39 46 0.23
40 134 0.68
41 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76024802 original size:8 final size:8
Alignment explanation
Indices: 76024789--76024817 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
76024779 TTAAGTAAAA
76024789 ATTATTAT
1 ATTATTAT
76024797 ATTATTAT
1 ATTATTAT
76024805 ATTATTAT
1 ATTATTAT
76024813 ATTAT
1 ATTAT
76024818 ATTATATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
ATTATTAT
Found at i:76024809 original size:13 final size:13
Alignment explanation
Indices: 76024791--76024826 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
76024781 AAGTAAAAAT
76024791 TATTATATTATTA
1 TATTATATTATTA
76024804 TATTAT-TATATTA
1 TATTATAT-TATTA
76024817 TATTATATTA
1 TATTATATTA
76024827 ATTAAATGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 1 0.05
13 19 0.90
14 1 0.05
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:76024907 original size:23 final size:23
Alignment explanation
Indices: 76024881--76024928 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
76024871 GGTAATAATA
76024881 ATGTAAATGTGTAATAAATATAT
1 ATGTAAATGTGTAATAAATATAT
* * *
76024904 ATGTACATTTGTAATACATATAT
1 ATGTAAATGTGTAATAAATATAT
76024927 AT
1 AT
76024929 ATTTATTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.42
Consensus pattern (23 bp):
ATGTAAATGTGTAATAAATATAT
Found at i:76025032 original size:27 final size:29
Alignment explanation
Indices: 76025001--76025059 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 29
76024991 ATAAATAAAC
76025001 AAAAGAAACAAAAGAA-AGAAA-GAAAAA
1 AAAAGAAACAAAAGAATAGAAACGAAAAA
* * *
76025028 AAAAGGAAGAACAGAATAGAAACGAAAAA
1 AAAAGAAACAAAAGAATAGAAACGAAAAA
76025057 AAA
1 AAA
76025060 GGGGAGAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 13 0.48
28 5 0.19
29 9 0.33
ACGTcount: A:0.76, C:0.05, G:0.17, T:0.02
Consensus pattern (29 bp):
AAAAGAAACAAAAGAATAGAAACGAAAAA
Found at i:76025057 original size:28 final size:27
Alignment explanation
Indices: 76025011--76025083 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
76025001 AAAAGAAACA
*
76025011 AAAGAAAGAAA-GAAAAAAAAAGGAAG
1 AAAGAAAGAAACGAAAAAAAAGGGAAG
*
76025037 AACAGAATAGAAACGAAAAAAAAGGGGAG
1 AA-AGAA-AGAAACGAAAAAAAAGGGAAG
*
76025066 AAAGAAAGAAAGGAAAAA
1 AAAGAAAGAAACGAAAAA
76025084 GGGAAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 2 0.05
27 15 0.37
28 9 0.22
29 15 0.37
ACGTcount: A:0.71, C:0.03, G:0.25, T:0.01
Consensus pattern (27 bp):
AAAGAAAGAAACGAAAAAAAAGGGAAG
Found at i:76025067 original size:24 final size:23
Alignment explanation
Indices: 76025013--76025097 Score: 64
Period size: 24 Copynumber: 3.4 Consensus size: 23
76025003 AAGAAACAAA
* *
76025013 AGAAAGAAAGAAA-AAAAAAGGA
1 AGAAAGAAAGAAAGAAAAAGGGG
76025035 AGAACAGAATAGAAACGAAAAAAAAGGGG
1 AGAA-AGAA-AGAAA-G---AAAAAGGGG
*
76025064 AGAAAGAAAGAAAGGAAAAAGGGAA
1 AGAAAGAAAGAAA-GAAAAAGGG-G
76025089 AGAAAGAAA
1 AGAAAGAAA
76025098 AGGGAGAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
22 4 0.08
23 4 0.08
24 13 0.25
25 9 0.18
27 6 0.12
28 4 0.08
29 11 0.22
ACGTcount: A:0.69, C:0.02, G:0.27, T:0.01
Consensus pattern (23 bp):
AGAAAGAAAGAAAGAAAAAGGGG
Found at i:76025106 original size:17 final size:18
Alignment explanation
Indices: 76025068--76025106 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
76025058 AAGGGGAGAA
76025068 AGAAAGAAAGGAAAAAGG
1 AGAAAGAAAGGAAAAAGG
*
76025086 -GAAAGAAA-GAAAAGGG
1 AGAAAGAAAGGAAAAAGG
76025102 AGAAA
1 AGAAA
76025107 TTAGGGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (18 bp):
AGAAAGAAAGGAAAAAGG
Found at i:76026015 original size:40 final size:39
Alignment explanation
Indices: 76025963--76026078 Score: 151
Period size: 40 Copynumber: 2.9 Consensus size: 39
76025953 CCTTCTCAAG
*
76025963 AATTAAAAGTGAATAGGATTTATTCCTAATTCACTAAAAGA
1 AATT-AAAGTGAATAGGATTTATTCCTGATTCACTAAAA-A
*
76026004 AATTAAAGTGAATAGGATTTATTCCTGATTCACTAGAAA
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTAAAAA
* * * *
76026043 TATATAAAGTGGATAGGATTTGTTCTTGATTCACTA
1 AAT-TAAAGTGAATAGGATTTATTCCTGATTCACTA
76026079 TGGTAACTCA
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.04
40 61 0.90
41 4 0.06
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (39 bp):
AATTAAAGTGAATAGGATTTATTCCTGATTCACTAAAAA
Found at i:76028525 original size:7 final size:7
Alignment explanation
Indices: 76028513--76028557 Score: 56
Period size: 7 Copynumber: 6.3 Consensus size: 7
76028503 TTGGAAAGCC
76028513 TTTTTAT
1 TTTTTAT
76028520 TTTTTAT
1 TTTTTAT
76028527 TTTTTAT
1 TTTTTAT
76028534 TTTATT-T
1 TTT-TTAT
*
76028541 TGTTTTGT
1 T-TTTTAT
76028549 TTTTTAT
1 TTTTTAT
76028556 TT
1 TT
76028558 AGTTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
7 28 0.82
8 6 0.18
ACGTcount: A:0.11, C:0.00, G:0.04, T:0.84
Consensus pattern (7 bp):
TTTTTAT
Found at i:76039798 original size:5 final size:5
Alignment explanation
Indices: 76039788--76039819 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
76039778 TTATGTGTTC
76039788 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
76039820 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:76039802 original size:9 final size:9
Alignment explanation
Indices: 76039788--76039818 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
76039778 TTATGTGTTC
76039788 TTTATTTTA
1 TTTATTTTA
76039797 TTTATTTTA
1 TTTATTTTA
76039806 TTTTATTTTA
1 -TTTATTTTA
76039816 TTT
1 TTT
76039819 TTCACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:76053922 original size:9 final size:9
Alignment explanation
Indices: 76053881--76053949 Score: 50
Period size: 9 Copynumber: 7.1 Consensus size: 9
76053871 TATTTTTCTA
76053881 TAAAAATAT
1 TAAAAATAT
*
76053890 TAAACAATAA
1 TAAA-AATAT
*
76053900 T-AAAATAGA
1 TAAAAATA-T
*
76053909 AAAAAATAT
1 TAAAAATAT
76053918 TAAAAATAT
1 TAAAAATAT
76053927 ATAAACTAAATAT
1 -T-AA--AAATAT
76053940 TAAAAATAT
1 TAAAAATAT
76053949 T
1 T
76053950 TAAATTGATA
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
8 4 0.08
9 22 0.45
10 12 0.24
11 4 0.08
12 1 0.02
13 6 0.12
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (9 bp):
TAAAAATAT
Found at i:76053939 original size:22 final size:22
Alignment explanation
Indices: 76053912--76053953 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
76053902 AAATAGAAAA
76053912 AAATATTAAAAATATATAAACT
1 AAATATTAAAAATATATAAACT
*
76053934 AAATATTAAAAATATTTAAA
1 AAATATTAAAAATATATAAA
76053954 TTGATATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AAATATTAAAAATATATAAACT
Found at i:76054574 original size:9 final size:9
Alignment explanation
Indices: 76054562--76054697 Score: 62
Period size: 9 Copynumber: 14.3 Consensus size: 9
76054552 TTATGACTTT
76054562 TTTTAATAA
1 TTTTAATAA
*
76054571 TTTTCATAA
1 TTTTAATAA
*
76054580 GTTTATATCAA
1 TTTTA-AT-AA
*
76054591 TTTTAATCA
1 TTTTAATAA
*
76054600 TTTTAATCA
1 TTTTAATAA
*
76054609 TTTTATAGAA
1 TTTTA-ATAA
*
76054619 TTTTAATACGT
1 TTTTAATA--A
*
76054630 TTTTATAAAA
1 TTTTA-ATAA
76054640 TTTTAA-ATA
1 TTTTAATA-A
*
76054649 TTTTGAATATG
1 TTTT-AATA-A
*
76054660 TTTTATTAA
1 TTTTAATAA
76054669 TTTT-AT-A
1 TTTTAATAA
*
76054676 TTTTTATAA
1 TTTTAATAA
*
76054685 CTTTTTATAA
1 -TTTTAATAA
76054695 TTT
1 TTT
76054698 ATTAGATTTT
Statistics
Matches: 100, Mismatches: 15, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
7 5 0.05
8 4 0.04
9 42 0.42
10 30 0.30
11 17 0.17
12 2 0.02
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (9 bp):
TTTTAATAA
Found at i:76054596 original size:29 final size:28
Alignment explanation
Indices: 76054562--76054626 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 28
76054552 TTATGACTTT
*
76054562 TTTTAATAATTTTCATAAGTTTATATCAA
1 TTTTAATAATTTTAATAAGTTTATA-CAA
* * * *
76054591 TTTTAATCATTTTAATCATTTTATAGAA
1 TTTTAATAATTTTAATAAGTTTATACAA
76054619 TTTTAATA
1 TTTTAATA
76054627 CGTTTTTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 9 0.30
29 21 0.70
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (28 bp):
TTTTAATAATTTTAATAAGTTTATACAA
Found at i:76054621 original size:19 final size:21
Alignment explanation
Indices: 76054599--76054645 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
76054589 AATTTTAATC
*
76054599 ATTTTAAT-C-ATTTTATAGA
1 ATTTTAATACGATTTTATAAA
*
76054618 ATTTTAATACGTTTTTATAAA
1 ATTTTAATACGATTTTATAAA
76054639 ATTTTAA
1 ATTTTAA
76054646 ATATTTTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 8 0.33
20 1 0.04
21 15 0.62
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (21 bp):
ATTTTAATACGATTTTATAAA
Found at i:76054682 original size:8 final size:8
Alignment explanation
Indices: 76054655--76054777 Score: 52
Period size: 8 Copynumber: 14.0 Consensus size: 8
76054645 AATATTTTGA
76054655 ATATGTTTT
1 ATAT-TTTT
*
76054664 ATTAATTTT
1 A-TATTTTT
76054673 ATATTTTT
1 ATATTTTT
76054681 ATAACTTTTT
1 AT-A-TTTTT
76054691 ATAATTTATT
1 AT-ATTT-TT
*
76054701 AGATTTTTT
1 ATA-TTTTT
76054710 ATATTTTT
1 ATATTTTT
*
76054718 ATAAAATTATAT
1 AT---ATT-TTT
* *
76054730 CTATTTTC
1 ATATTTTT
76054738 ATATTTTT
1 ATATTTTT
*
76054746 A-ATATTT
1 ATATTTTT
*
76054753 A-ATGATCTT
1 ATAT--TTTT
76054762 ATATTTTT
1 ATATTTTT
76054770 ATATTTTT
1 ATATTTTT
76054778 TTCTAATTTT
Statistics
Matches: 88, Mismatches: 14, Indels: 25
0.69 0.11 0.20
Matches are distributed among these distances:
7 8 0.09
8 34 0.39
9 21 0.24
10 19 0.22
11 3 0.03
12 3 0.03
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.63
Consensus pattern (8 bp):
ATATTTTT
Found at i:76055081 original size:29 final size:28
Alignment explanation
Indices: 76055048--76055126 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 28
76055038 TCTATGTGCT
*
76055048 CTTTTAAATTTTAAAATTTAGTCTCTATA
1 CTTTT-AATTTTAAAATCTAGTCTCTATA
*
76055077 CTTTT-ATTTCTAGAAATCTAGTCTCTCTA
1 CTTTTAATTT-TA-AAATCTAGTCTCTATA
* *
76055106 TTTTTAGATTTCAAAATCTAG
1 CTTTTA-ATTTTAAAATCTAG
76055127 ATTCAACTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
27 4 0.10
28 2 0.05
29 31 0.74
30 1 0.02
31 4 0.10
ACGTcount: A:0.30, C:0.14, G:0.06, T:0.49
Consensus pattern (28 bp):
CTTTTAATTTTAAAATCTAGTCTCTATA
Found at i:76056775 original size:18 final size:18
Alignment explanation
Indices: 76056752--76056788 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
76056742 AAATTCTTAT
76056752 AACTAGGAATTTTAACAA
1 AACTAGGAATTTTAACAA
**
76056770 AACTAGGGGTTTTAACAA
1 AACTAGGAATTTTAACAA
76056788 A
1 A
76056789 CACGTTGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.11, G:0.16, T:0.27
Consensus pattern (18 bp):
AACTAGGAATTTTAACAA
Found at i:76057625 original size:143 final size:143
Alignment explanation
Indices: 76057364--76057649 Score: 500
Period size: 143 Copynumber: 2.0 Consensus size: 143
76057354 GTTAGTCACT
*
76057364 GACCATGCGTATGTAACTCACGTGCTTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAG
1 GACCATGCATATGTAACTCACGTGCTTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAG
* *
76057429 CCGATAGTTAGTACATTGGGTACATGACTTTTGTATGGCATGACTTTACTAGCAACAATGGAATT
66 CCGATAGTTAGTACATTGGGTACATGACTTGTGTATGGCATGACTTTAATAGCAACAATGGAATT
76057494 CATAGCTCAATTA
131 CATAGCTCAATTA
* *
76057507 GACCATGCATATGTAACTCATGTGCTTTGAACTAAGTGGAGGCTTATGCTCTAAAGATGATCAAG
1 GACCATGCATATGTAACTCACGTGCTTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAG
* * *
76057572 CCGATAGTTGGTACGTTGGGTACATGACTTGTGTATGGCATGACTTTAATAGCAACAGTGGAATT
66 CCGATAGTTAGTACATTGGGTACATGACTTGTGTATGGCATGACTTTAATAGCAACAATGGAATT
76057637 CATAGCTCAATTA
131 CATAGCTCAATTA
76057650 AAGAGTTAAC
Statistics
Matches: 135, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
143 135 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (143 bp):
GACCATGCATATGTAACTCACGTGCTTTGAAATAAGTGGAGGCTTATGCTCTAAAGATGATCAAG
CCGATAGTTAGTACATTGGGTACATGACTTGTGTATGGCATGACTTTAATAGCAACAATGGAATT
CATAGCTCAATTA
Found at i:76058078 original size:11 final size:12
Alignment explanation
Indices: 76058059--76058083 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76058049 TGAAGTTAGG
76058059 AAAATTTTTGAA
1 AAAATTTTTGAA
76058071 AAAATTTTTGAA
1 AAAATTTTTGAA
76058083 A
1 A
76058084 TAGCGAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (12 bp):
AAAATTTTTGAA
Found at i:76059927 original size:51 final size:51
Alignment explanation
Indices: 76059867--76060040 Score: 287
Period size: 51 Copynumber: 3.4 Consensus size: 51
76059857 TTTGAGTACT
*
76059867 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTCAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTA
* * * *
76059918 TCTGATCAGTGATAAGTGACAAATGATAAGTGGTAG-CTTAGCTACTCTTA
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTA
*
76059968 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTA
76060019 TCTGATCAGTGACAAGTGATAA
1 TCTGATCAGTGACAAGTGATAA
76060041 ATGTGATCAG
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
50 45 0.40
51 67 0.60
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (51 bp):
TCTGATCAGTGACAAGTGATAAGTGATAAGTGGTAGCCTTAGCTACACTTA
Found at i:76070344 original size:38 final size:38
Alignment explanation
Indices: 76070293--76070369 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
76070283 TAATCCAAAA
76070293 TTACATAATATTAAATTCCAACTCAAATCACAATCAAT
1 TTACATAATATTAAATTCCAACTCAAATCACAATCAAT
*
76070331 TTACATAATATTAAATTCCAGCTCAAATCACAATCAAT
1 TTACATAATATTAAATTCCAACTCAAATCACAATCAAT
76070369 T
1 T
76070370 ACAAAGCCAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.32
Consensus pattern (38 bp):
TTACATAATATTAAATTCCAACTCAAATCACAATCAAT
Found at i:76074213 original size:34 final size:34
Alignment explanation
Indices: 76074170--76074239 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
76074160 TGCTTATTAT
76074170 ATGTAAAACTTATTATTTTATGATATTATATGAA
1 ATGTAAAACTTATTATTTTATGATATTATATGAA
76074204 ATGTAAAACTTATTATTTTATGATATTATATGAA
1 ATGTAAAACTTATTATTTTATGATATTATATGAA
76074238 AT
1 AT
76074240 AACGAAAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (34 bp):
ATGTAAAACTTATTATTTTATGATATTATATGAA
Found at i:76074937 original size:26 final size:26
Alignment explanation
Indices: 76074902--76074957 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 26
76074892 ATATTTATAA
* *
76074902 TAATAGTTA-TA-TATGTTTTCTT-T
1 TAATAGTTATTATTATGTTATATTAT
76074925 TAATAGTTATTATTATGTTATATTAT
1 TAATAGTTATTATTATGTTATATTAT
76074951 TAATAGT
1 TAATAGT
76074958 ACATATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 9 0.32
24 2 0.07
25 9 0.32
26 8 0.29
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (26 bp):
TAATAGTTATTATTATGTTATATTAT
Found at i:76080845 original size:6 final size:6
Alignment explanation
Indices: 76080836--76080868 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
76080826 GAAGATTCGT
*
76080836 CGGTGG CGGTGG CGGTGG CGGTGG CGGCGG CGG
1 CGGTGG CGGTGG CGGTGG CGGTGG CGGTGG CGG
76080869 AAGCATCACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.21, G:0.67, T:0.12
Consensus pattern (6 bp):
CGGTGG
Found at i:76083969 original size:9 final size:9
Alignment explanation
Indices: 76083957--76083991 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
76083947 CTCTCTATTT
76083957 TCTCTCAAC
1 TCTCTCAAC
76083966 TCTCTCAAC
1 TCTCTCAAC
*
76083975 TCTCTCAAT
1 TCTCTCAAC
76083984 TCTCTCAA
1 TCTCTCAA
76083992 ATTTTGTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.23, C:0.40, G:0.00, T:0.37
Consensus pattern (9 bp):
TCTCTCAAC
Found at i:76084217 original size:10 final size:10
Alignment explanation
Indices: 76084202--76084227 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
76084192 AGTTTTTAAA
76084202 ATTTTAAAAT
1 ATTTTAAAAT
76084212 ATTTTAAAAT
1 ATTTTAAAAT
76084222 ATTTTA
1 ATTTTA
76084228 TTTTGTAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
ATTTTAAAAT
Found at i:76085620 original size:21 final size:20
Alignment explanation
Indices: 76085581--76085621 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
76085571 ATTACCAAGT
*
76085581 TACCAAATATGCAATACATA
1 TACCAAATATACAATACATA
*
76085601 TACCAAATTTACACATACATA
1 TACCAAATATACA-ATACATA
76085622 CACTTACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.49, C:0.22, G:0.02, T:0.27
Consensus pattern (20 bp):
TACCAAATATACAATACATA
Found at i:76088677 original size:26 final size:26
Alignment explanation
Indices: 76088648--76088730 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
76088638 TTGGATCACC
76088648 AATAAATCATTAGTTTTGGTCTACGA
1 AATAAATCATTAGTTTTGGTCTACGA
* ** ** *
76088674 AATAAA-AAGAATGGATTGGATC-AC-C
1 AATAAATCATTA-GTTTTGG-TCTACGA
76088699 AATAAATCATTAGTTTTGGTCTACGA
1 AATAAATCATTAGTTTTGGTCTACGA
76088725 AATAAA
1 AATAAA
76088731 AAGGATGGGT
Statistics
Matches: 40, Mismatches: 12, Indels: 10
0.65 0.19 0.16
Matches are distributed among these distances:
24 2 0.05
25 15 0.38
26 21 0.52
27 2 0.05
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (26 bp):
AATAAATCATTAGTTTTGGTCTACGA
Found at i:76088710 original size:51 final size:51
Alignment explanation
Indices: 76088636--76088738 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
76088626 TTTTAGGTGT
76088636 GATTGGATCACCAATAAATCATTAGTTTTGGTCTACGAAATAAAAAGAATG
1 GATTGGATCACCAATAAATCATTAGTTTTGGTCTACGAAATAAAAAGAATG
*
76088687 GATTGGATCACCAATAAATCATTAGTTTTGGTCTACGAAATAAAAAGGATG
1 GATTGGATCACCAATAAATCATTAGTTTTGGTCTACGAAATAAAAAGAATG
76088738 G
1 G
76088739 GTTTGGGAGT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (51 bp):
GATTGGATCACCAATAAATCATTAGTTTTGGTCTACGAAATAAAAAGAATG
Found at i:76088717 original size:25 final size:25
Alignment explanation
Indices: 76088638--76088717 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
76088628 TTAGGTGTGA
76088638 TTGGATCACCAATAAATCATTAGTT
1 TTGGATCACCAATAAATCATTAGTT
* * ** **
76088663 TTGG-TCTACGAAATAAA-AAGAATGGA
1 TTGGATC-AC-CAATAAATCATTA-GTT
76088689 TTGGATCACCAATAAATCATTAGTT
1 TTGGATCACCAATAAATCATTAGTT
76088714 TTGG
1 TTGG
76088718 TCTACGAAAT
Statistics
Matches: 38, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
24 2 0.05
25 19 0.50
26 15 0.39
27 2 0.05
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (25 bp):
TTGGATCACCAATAAATCATTAGTT
Found at i:76090424 original size:36 final size:36
Alignment explanation
Indices: 76090368--76090453 Score: 138
Period size: 36 Copynumber: 2.3 Consensus size: 36
76090358 TACGAAGTCT
76090368 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
76090404 GTACCCGGACA-AATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
76090440 TCACCCGGAACATA
1 T-ACCCGG-ACATA
76090454 TTTCCAAGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
35 1 0.02
36 31 0.67
37 13 0.28
38 1 0.02
ACGTcount: A:0.27, C:0.34, G:0.20, T:0.20
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:76090593 original size:49 final size:49
Alignment explanation
Indices: 76090494--76090934 Score: 738
Period size: 49 Copynumber: 8.9 Consensus size: 49
76090484 ATTACAACAT
* * * * * *
76090494 TCACATCAGCCATTCGGCTTTACCACATATATATATACACTTTCATATTCA
1 TCACATCGGCCATTAGGCCTTATCAC--ATATATATACATTTTCACATTCA
*
76090545 TCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
* * *
76090594 TCACGTCGACCATTAGGCCTTATCACATATATATACATTTCCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
*
76090643 TCACATCGGCCATTAGGCCTTATCACATATATATACCTTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
76090692 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
76090741 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
*
76090790 TCACATCGGCCATTAGGCCTTATCACATATATATATACCTTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCAC--ATATATATACATTTTCACATTCA
76090841 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
76090890 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACA
1 TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACA
76090935 AATTTTGATA
Statistics
Matches: 372, Mismatches: 16, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
49 303 0.81
51 69 0.19
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
TCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCA
Found at i:76094003 original size:40 final size:41
Alignment explanation
Indices: 76093959--76094057 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
76093949 TTGATTGTCC
* * **
76093959 TCGGGACATAGCCCGG-TTATAGTGA-TTCGCACAATTGCCT
1 TCGGGACATAGCCCGGATT-TAGTAACTTAGCACAAAAGCCT
76093999 TCGGGA-ATTAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
1 TCGGGACA-TAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
*
76094040 TCGGGACTTAGCCCGGAT
1 TCGGGACATAGCCCGGAT
76094058 ACCATTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 19 0.38
41 30 0.60
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (41 bp):
TCGGGACATAGCCCGGATTTAGTAACTTAGCACAAAAGCCT
Found at i:76094850 original size:40 final size:39
Alignment explanation
Indices: 76094801--76095152 Score: 407
Period size: 40 Copynumber: 8.8 Consensus size: 39
76094791 CCAGCATGAT
76094801 TGCTCTTCGGGATCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTC-GGATCTAGCCCGGATACATCACTAGCACGAA
* * *
76094841 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGATC-TAGCCCGGATACATCACTAGCACGAA
* * * *
76094881 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGATC-TAGCCCGGATACATCACTAGCACGAA
* * * *
76094921 TGCTTTTCAGGATTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCTTC-GGATCTAGCCCGGATACATCACTAGCACGAA
* * *
76094961 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGATC-TAGCCCGGATACATCACTAGCACGAA
* *
76095001 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACAAA
1 TGCTCTTC-GGATCTAGCCCGGATACATCACTAGCACGAA
* *
76095041 TGCTCTTCAGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTC-GGATCTAGCCCGGATACATCACTAGCACGAA
* * *
76095081 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGATC-TAGCCCGGATACATCACTAGCACGAA
* * *
76095121 TGCTCTTCGGGGTTTAGCCCGGATATATCACT
1 TGCTCTTC-GGATCTAGCCCGGATACATCACT
76095153 CTCAATTCTC
Statistics
Matches: 266, Mismatches: 40, Indels: 12
0.84 0.13 0.04
Matches are distributed among these distances:
39 10 0.04
40 248 0.93
41 8 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (39 bp):
TGCTCTTCGGATCTAGCCCGGATACATCACTAGCACGAA
Found at i:76094951 original size:80 final size:80
Alignment explanation
Indices: 76094801--76095152 Score: 449
Period size: 80 Copynumber: 4.4 Consensus size: 80
76094791 CCAGCATGAT
* *
76094801 TGCTCTTCGGGA-TCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
1 TGCTCTTCGGAACT-TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
*
76094865 ACATCACTAGCATGAA
65 ACATCACTAGCACGAA
* * * * * *
76094881 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACAAATGCTTTTCAGG-ATTTAGCCCAGAT
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGAACTTAGCCCGGAT
*
76094945 ATATCACTAGCACGAA
65 ACATCACTAGCACGAA
* * * *
76094961 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
*
76095026 CATCACTAGCACAAA
66 CATCACTAGCACGAA
* * * *
76095041 TGCTCTTCAGG-ATTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGAT
1 TGCTCTTC-GGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
76095105 ACATCACTAGCACGAA
65 ACATCACTAGCACGAA
*** *
76095121 TGCTCTTCGGGGTTTAGCCCGGATATATCACT
1 TGCTCTTCGGAACTTAGCCCGGATACATCACT
76095153 CTCAATTCTC
Statistics
Matches: 242, Mismatches: 25, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
79 4 0.02
80 233 0.96
81 5 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:76095028 original size:120 final size:120
Alignment explanation
Indices: 76094801--76095152 Score: 587
Period size: 120 Copynumber: 2.9 Consensus size: 120
76094791 CCAGCATGAT
* * * *
76094801 TGCTCTTCGGGATCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCAGGATTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATA
* * * * *
76094866 CATCACTAGCATGAATGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACAAA
66 CATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACAAA
* *
76094921 TGCTTTTCAGGATTTAGCCCAGATATATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATA
1 TGCTCTTCAGGATTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATA
76094986 CATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACAAA
66 CATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACAAA
76095041 TGCTCTTCAGGATTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATA
1 TGCTCTTCAGGATTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATA
* *
76095106 CATCACTAGCACGAATGCTCTTCGGGGTTTAGCCCGGATATATCACT
66 CATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATACATCACT
76095153 CTCAATTCTC
Statistics
Matches: 217, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 217 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (120 bp):
TGCTCTTCAGGATTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATA
CATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATACATCACTAGCACAAA
Found at i:76097038 original size:36 final size:36
Alignment explanation
Indices: 76096982--76097067 Score: 138
Period size: 36 Copynumber: 2.3 Consensus size: 36
76096972 CACGAAGTCT
76096982 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
76097018 GTACCCGGACA-AATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
76097054 TCACCCGGAACATA
1 T-ACCCGG-ACATA
76097068 TTTCCAAGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
35 1 0.02
36 31 0.67
37 13 0.28
38 1 0.02
ACGTcount: A:0.27, C:0.34, G:0.20, T:0.20
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:76097207 original size:49 final size:49
Alignment explanation
Indices: 76097136--76097548 Score: 718
Period size: 49 Copynumber: 8.4 Consensus size: 49
76097126 TTTACCACAT
* * *
76097136 ATATATATACACTTTCATATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
76097185 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
76097234 ATATATATACATTTCCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
76097283 ATATATATACCTTTCCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
76097332 ATATATATACCTTTCCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
76097381 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
76097430 ATATATATATACCTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
76097481 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
76097530 ATATATATACATTTTCACA
1 ATATATATACATTTTCACA
76097549 AATTTTGATA
Statistics
Matches: 353, Mismatches: 9, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
49 305 0.86
51 48 0.14
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:76100401 original size:23 final size:23
Alignment explanation
Indices: 76100344--76100401 Score: 55
Period size: 23 Copynumber: 2.5 Consensus size: 23
76100334 ATACAATTAG
* *
76100344 ACATATAAATATATACAAAACAA
1 ACATATATATATATAAAAAACAA
** *
76100367 ATGTA-ATAATATATAAAAAATAA
1 ACATATAT-ATATATAAAAAACAA
76100390 ACATATATATAT
1 ACATATATATAT
76100402 CAAACAAACA
Statistics
Matches: 26, Mismatches: 7, Indels: 4
0.70 0.19 0.11
Matches are distributed among these distances:
22 1 0.04
23 23 0.88
24 2 0.08
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (23 bp):
ACATATATATATATAAAAAACAA
Found at i:76100723 original size:5 final size:5
Alignment explanation
Indices: 76100715--76100792 Score: 52
Period size: 5 Copynumber: 15.0 Consensus size: 5
76100705 ACTATATAGA
* * * * *
76100715 ATAAT ATAAT ATCAT ATAAT ATAAT AAAAAT TTAAT -TACAT ATAAT TTAAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATA-AT ATAAT ATAAT
76100766 AGTAA- ATAAT AATAGAT ATAAT ATAAT
1 A-TAAT ATAAT -ATA-AT ATAAT ATAAT
76100793 GGACAATAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
4 5 0.09
5 36 0.62
6 15 0.26
7 2 0.03
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (5 bp):
ATAAT
Found at i:76100724 original size:26 final size:25
Alignment explanation
Indices: 76100677--76100792 Score: 85
Period size: 27 Copynumber: 4.4 Consensus size: 25
76100667 AGAAAATATT
76100677 TAAT-TAATAAAATATTAATAATACATA
1 TAATATAATAAAA-A-T-ATAATACATA
*
76100704 TACTAT-ATAGAATAATATAATATCATA
1 TAATATAATA-AA-AATATAATA-CATA
*
76100731 TAATATAATAAAAATTTAATTACATA
1 TAATATAATAAAAATATAA-TACATA
* *
76100757 TAATTTAA-AAGTAAATAATAATAGATA
1 TAATATAATAA--AAAT-ATAATACATA
76100784 TAATATAAT
1 TAATATAAT
76100793 GGACAATAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 19
0.73 0.07 0.19
Matches are distributed among these distances:
25 2 0.03
26 23 0.32
27 36 0.50
28 10 0.14
29 1 0.01
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (25 bp):
TAATATAATAAAAATATAATACATA
Found at i:76103078 original size:206 final size:206
Alignment explanation
Indices: 76102688--76103568 Score: 1311
Period size: 206 Copynumber: 4.3 Consensus size: 206
76102678 TAAATCTGCT
* * *
76102688 TCTTCGATTAGTTCCTCGTAAACACAAGTATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
1 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
* ** * *
76102753 TCTGGAGGTTAGATCTGCTATGTATCTGCTATT-CGTCGAA-ATGGAGATGCCAGACTTCGATTT
66 TCTGAAGGCCAGATCTGCTATGTATCTGCT-TTCCGTCGAATATGGAGACGCCAAACTTCGATTT
* * *
76102816 GTTCTCTGACAATACAGAGATGCCAAATCATATTAGATTTGCTTCATCGCAAACACGTGGAAGCC
130 GTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCC
76102881 AAATCAGCTATG
195 AAATCAGCTATG
* *
76102893 TCTTTGATTTGTTCCTTGTAAACACAAGGATGCCAAGTCATCTTGGATCTGCTTCAGTATAAACA
1 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
* * * *
76102958 TCTGAAGGCCAGATCTACTATGTATCTG-TTCTCTGTCGAATATGGAGACTCCAAACTTTGATTT
66 TCTGAAGGCCAGATCTGCTATGTATCTGCTT-TCCGTCGAATATGGAGACGCCAAACTTCGATTT
* *
76103022 GTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGGAAGCC
130 GTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCC
76103087 AAATCAGCTATG
195 AAATCAGCTATG
** * * *
76103099 TCTTTAATTTGTTCTTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTGCTTCAGTATAAACA
1 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
* *
76103164 TCTGAAGACCAGATCTGCTATGTATCTGCTTTCCATCGAATATGGAGACGCCAAACTTCGATTTG
66 TCTGAAGGCCAGATCTGCTATGTATCTGCTTTCCGTCGAATATGGAGACGCCAAACTTCGATTTG
* * * *
76103229 TTCTCTGACAATATAGAGATACCAAATCATCTTAGATTTGCTTCATTGTAAGCACGTGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCA
*
76103294 AATTAGCTATG
196 AATCAGCTATG
* * * * *
76103305 AT-TTCGATTTGTTCCTTATAAACACAACGATGCCAAATCATCTTAGATCTGCTTCAGTCTAATC
1 -TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAAC
* * * *
76103369 ATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATGGAGACGCCAAAATTTGATTT
65 ATCTGAAGGCCAGATCTGCTATGTATCTGCTTTCCGTCGAATATGGAGACGCCAAACTTCGATTT
* *
76103434 GTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTTAAAGCC
130 GTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCC
76103499 AAATCAGCTATG
195 AAATCAGCTATG
*
76103511 TCTTCGATTTGTTCCTTGTAAACACAAGGATGTCAAATCATCTTGGATCTTGCTTCAG
1 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATC-TGCTTCAG
76103569 CCAGATCTAC
Statistics
Matches: 609, Mismatches: 60, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
203 1 0.00
204 2 0.00
205 91 0.15
206 504 0.83
207 11 0.02
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (206 bp):
TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACA
TCTGAAGGCCAGATCTGCTATGTATCTGCTTTCCGTCGAATATGGAGACGCCAAACTTCGATTTG
TTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAACACGTGAAAGCCA
AATCAGCTATG
Found at i:76115164 original size:23 final size:23
Alignment explanation
Indices: 76115107--76115176 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 23
76115097 ATACAATTAG
* *
76115107 ACATATAAATATATACAAAACAA
1 ACATATATATATATAAAAAACAA
** *
76115130 ATGTA-ATAATATATAAAAAATAA
1 ACATATAT-ATATATAAAAAACAA
76115153 ACATATATATATATCAAACAAACA
1 ACATATATATATAT-AAA-AAACA
76115177 CACTAAACAA
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
22 1 0.03
23 25 0.71
24 5 0.14
25 4 0.11
ACGTcount: A:0.63, C:0.10, G:0.01, T:0.26
Consensus pattern (23 bp):
ACATATATATATATAAAAAACAA
Found at i:76115488 original size:5 final size:5
Alignment explanation
Indices: 76115480--76115557 Score: 52
Period size: 5 Copynumber: 15.0 Consensus size: 5
76115470 ACTATATAGA
* * * * *
76115480 ATAAT ATAAT ATCAT ATAAT ATAAT AAAAAT TTAAT -TACAT ATAAT TTAAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT -ATAAT ATAAT ATA-AT ATAAT ATAAT
76115531 AGTAA- ATAAT AATAGAT ATAAT ATAAT
1 A-TAAT ATAAT -ATA-AT ATAAT ATAAT
76115558 GGACAATATT
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
4 5 0.09
5 36 0.62
6 15 0.26
7 2 0.03
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37
Consensus pattern (5 bp):
ATAAT
Found at i:76115489 original size:26 final size:25
Alignment explanation
Indices: 76115442--76115557 Score: 85
Period size: 27 Copynumber: 4.4 Consensus size: 25
76115432 AGAAAATATT
76115442 TAAT-TAATAAAATATTAATAATACATA
1 TAATATAATAAAA-A-T-ATAATACATA
*
76115469 TACTAT-ATAGAATAATATAATATCATA
1 TAATATAATA-AA-AATATAATA-CATA
*
76115496 TAATATAATAAAAATTTAATTACATA
1 TAATATAATAAAAATATAA-TACATA
* *
76115522 TAATTTAA-AAGTAAATAATAATAGATA
1 TAATATAATAA--AAAT-ATAATACATA
76115549 TAATATAAT
1 TAATATAAT
76115558 GGACAATATT
Statistics
Matches: 72, Mismatches: 7, Indels: 19
0.73 0.07 0.19
Matches are distributed among these distances:
25 2 0.03
26 23 0.32
27 36 0.50
28 10 0.14
29 1 0.01
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (25 bp):
TAATATAATAAAAATATAATACATA
Found at i:76121001 original size:36 final size:36
Alignment explanation
Indices: 76120945--76121030 Score: 138
Period size: 36 Copynumber: 2.3 Consensus size: 36
76120935 TACGAAGTCT
76120945 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
76120981 GTACCCGGACA-AATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
76121017 TCACCCGGAACATA
1 T-ACCCGG-ACATA
76121031 TTTCCAAGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
35 1 0.02
36 31 0.67
37 13 0.28
38 1 0.02
ACGTcount: A:0.27, C:0.34, G:0.20, T:0.20
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:76121170 original size:49 final size:49
Alignment explanation
Indices: 76121099--76121373 Score: 478
Period size: 49 Copynumber: 5.6 Consensus size: 49
76121089 TTTACCACAT
* * * *
76121099 ATATATATACACTTTCATATTCATCACGTCGGCCATTAGACCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
76121148 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
76121197 ATATATATACCTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
76121246 ATATATATACCTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
76121295 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
76121344 ATATATATACCTTTTCACATTCATCACATC
1 ATATATATACATTTTCACATTCATCACATC
76121374 TATTATTATG
Statistics
Matches: 217, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 217 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:76124386 original size:40 final size:40
Alignment explanation
Indices: 76124342--76124482 Score: 128
Period size: 40 Copynumber: 3.5 Consensus size: 40
76124332 GCTCGATTGT
* *
76124342 CTTCGGGACA-TAGCCCGG-TTATAGTGATTCGCAC-AATCGC
1 CTTCGGGA-ATTAGCCCGGATT-TAGTAACTCGCACAAAT-GC
76124382 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * * *
76124422 CTTCGGGAATT-GACCCAGATTTAATCACTTAGCACAAAAGC
1 CTTCGGGAATTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
* *
76124463 CTTCGAGACTTAGCCCGGAT
1 CTTCGGGAATTAGCCCGGAT
76124483 ACCATTCGAA
Statistics
Matches: 85, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
39 2 0.02
40 52 0.61
41 30 0.35
42 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:76125270 original size:40 final size:40
Alignment explanation
Indices: 76125226--76125497 Score: 391
Period size: 40 Copynumber: 6.8 Consensus size: 40
76125216 CCAGCATGAT
* * *
76125226 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * * * *
76125266 TGCTCTTCGGAACTTAGTCCAGTTGCATTACTAGCAGGAG
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * *
76125306 TGCTCTTCGGAACTTAGTCCGGACATATCACTAGCACGAG
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
76125346 TGCTCTTCGGAACTTAGTCCGGACACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
76125386 TGCTCTTCGGAACTTAGTCCGAACACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
76125426 TGCTCTTCGAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
76125466 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
76125498 CTCAATTCTC
Statistics
Matches: 208, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 208 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:76127355 original size:37 final size:36
Alignment explanation
Indices: 76127305--76127391 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 36
76127295 TACGAAGTCT
* *
76127305 TACCCAGACATAATCTCCACACGTGGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
76127341 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
76127378 TCACCCGGAACATA
1 T-ACCCGG-ACATA
76127392 TTTCCAAGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 40 0.87
38 5 0.11
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:76127532 original size:49 final size:49
Alignment explanation
Indices: 76127460--76127734 Score: 493
Period size: 49 Copynumber: 5.6 Consensus size: 49
76127450 TTTACCACAT
*
76127460 ATATATATACAC-TTTCACATTCATCACATCGGCCATTTGGCCTTATCAC
1 ATATATATAC-CTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
76127509 ATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATAC-CTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
76127558 ATATATATACCTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACCTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
76127607 ATATATATACCTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACCTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
76127656 ATATATATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATAC-CTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
76127705 ATATATATACCTTTTCACATTCATCACATC
1 ATATATATACCTTTTCACATTCATCACATC
76127735 TATTATTATG
Statistics
Matches: 222, Mismatches: 1, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
48 2 0.01
49 219 0.99
50 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (49 bp):
ATATATATACCTTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:76130313 original size:28 final size:28
Alignment explanation
Indices: 76130280--76130338 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
76130270 TTGGCATTTA
*
76130280 GTAATCACCTAAATGATATGTCATTGGC
1 GTAATCACCTAAATGATATGTCATTAGC
*
76130308 GTAATCACCTATATGATATGTCATTAGC
1 GTAATCACCTAAATGATATGTCATTAGC
76130336 GTA
1 GTA
76130339 CTGAGTCTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (28 bp):
GTAATCACCTAAATGATATGTCATTAGC
Found at i:76133915 original size:49 final size:49
Alignment explanation
Indices: 76133614--76133907 Score: 534
Period size: 49 Copynumber: 6.0 Consensus size: 49
76133604 ATAATAGTAT
76133614 ATGTGATGAATGTGAAAGTGTATATATATACGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATAT--GTGATAAGGCCTAATGGCCG
*
76133665 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCAAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
76133714 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
76133763 ATGTGATGAATGTGAAAGTGTATATATATGCGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
76133812 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
76133861 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAAGCCGAATGGC
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
76133908 TAATGTGAAT
Statistics
Matches: 237, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
49 208 0.88
51 29 0.12
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:76134007 original size:37 final size:37
Alignment explanation
Indices: 76133964--76134083 Score: 197
Period size: 37 Copynumber: 3.2 Consensus size: 37
76133954 AATATGTTCT
*
76133964 GGGTGAGACCCAATGACTACGTGTGGAGATTATGTCC
1 GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
*
76134001 GTGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
76134038 GGGT-ACGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTGA-GACCCGATGACTACGTGTGGAGATTATGTCC
*
76134075 GGGTAAGAC
1 GGGTGAGAC
76134084 TTCGTAATAA
Statistics
Matches: 78, Mismatches: 3, Indels: 4
0.92 0.04 0.05
Matches are distributed among these distances:
36 1 0.01
37 76 0.97
38 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.24
Consensus pattern (37 bp):
GGGTGAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:76138729 original size:30 final size:30
Alignment explanation
Indices: 76138695--76138755 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
76138685 AATATCCATG
76138695 ATCCATAAACATTTCACAATTTCATAACAT
1 ATCCATAAACATTTCACAATTTCATAACAT
76138725 ATCCATAAACATTTCACAATTTCATAACAT
1 ATCCATAAACATTTCACAATTTCATAACAT
76138755 A
1 A
76138756 CTTAACATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (30 bp):
ATCCATAAACATTTCACAATTTCATAACAT
Found at i:76139647 original size:20 final size:19
Alignment explanation
Indices: 76139608--76139647 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
76139598 TAATTAGTTT
**
76139608 TAAATTAAACTTAATTTAA
1 TAAATTAAACTTAAACTAA
76139627 TAAATTAAAACTTAAACTAA
1 TAAATT-AAACTTAAACTAA
76139647 T
1 T
76139648 TAAGCTAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAATTAAACTTAAACTAA
Found at i:76140567 original size:86 final size:88
Alignment explanation
Indices: 76140384--76140573 Score: 253
Period size: 88 Copynumber: 2.2 Consensus size: 88
76140374 TAGAAAAAGC
* * *
76140384 AATTAAGCCCCTAC--TTTTTTTTGCATTCATTTGGGTACTTGAACTTTCAAAATGAATCAAAAA
1 AATTAAGCCCCTACTTTTTTTTTTACACTCAATTGGGTACTTGAACTTTCAAAATGAATCAAAAA
* * *
76140447 GGCCCTCAAACCTTTTTAAAAAT
66 GACCCTCAAACCTTTTAAAAAAA
* * * *
76140470 AATTACGCCCCTACTTTTTTTTTTACACTCAATTGGGTACTTGAACTTTTAAAATGCATCAAAAC
1 AATTAAGCCCCTACTTTTTTTTTTACACTCAATTGGGTACTTGAACTTTCAAAATGAATCAAAAA
*
76140535 TACCCTCAAA-C-TTTAAAAAAA
66 GACCCTCAAACCTTTTAAAAAAA
76140556 AATTAAGCCCCTACTTTT
1 AATTAAGCCCCTACTTTT
76140574 ATTAAAGATT
Statistics
Matches: 90, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
86 38 0.42
87 1 0.01
88 51 0.57
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (88 bp):
AATTAAGCCCCTACTTTTTTTTTTACACTCAATTGGGTACTTGAACTTTCAAAATGAATCAAAAA
GACCCTCAAACCTTTTAAAAAAA
Found at i:76140691 original size:18 final size:18
Alignment explanation
Indices: 76140670--76140734 Score: 71
Period size: 18 Copynumber: 3.7 Consensus size: 18
76140660 AAAAATTTAT
76140670 TAAAAAAATATAAAATCG
1 TAAAAAAATATAAAATCG
*
76140688 TAAAAAAATA-AAAATTG
1 TAAAAAAATATAAAATCG
***
76140705 TAAAATTTTATAAAAATCG
1 TAAAAAAATAT-AAAATCG
76140724 T-AAAAAATATA
1 TAAAAAAATATA
76140735 GAATATATAG
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
17 14 0.38
18 16 0.43
19 7 0.19
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (18 bp):
TAAAAAAATATAAAATCG
Found at i:76141071 original size:55 final size:57
Alignment explanation
Indices: 76140967--76141089 Score: 142
Period size: 56 Copynumber: 2.2 Consensus size: 57
76140957 AGGGGTCATT
* * * *
76140967 AATTTTTATGATTTTTATAAAATTTTACAATTTTTTATTTTTTACAATTTTTAT-TA
1 AATTTTAATAATTTTTATAAAATTTTACAATTTATTATTTATTACAATTTTTATCTA
* ** * *
76141023 AATTTTAATAATTTTTCTAAAA-TTTATTATTTATTATTTATTATAATTTTTTTCTA
1 AATTTTAATAATTTTTATAAAATTTTACAATTTATTATTTATTACAATTTTTATCTA
*
76141079 ATTTTTAATAA
1 AATTTTAATAA
76141090 GAGCAGGGGC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 25 0.45
56 31 0.55
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (57 bp):
AATTTTAATAATTTTTATAAAATTTTACAATTTATTATTTATTACAATTTTTATCTA
Found at i:76142243 original size:17 final size:19
Alignment explanation
Indices: 76142203--76142249 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
76142193 ACTGCCAGGT
76142203 CACACGCCCATGGCTGAGA
1 CACACGCCCATGGCTGAGA
*
76142222 CACACGCCCATGGCTAAGA
1 CACACGCCCATGGCTGAGA
76142241 CACACGCCC
1 CACACGCCC
76142250 GTGTCTCTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.28, C:0.43, G:0.21, T:0.09
Consensus pattern (19 bp):
CACACGCCCATGGCTGAGA
Found at i:76143415 original size:26 final size:26
Alignment explanation
Indices: 76143386--76143540 Score: 98
Period size: 26 Copynumber: 6.2 Consensus size: 26
76143376 ATATAATAGA
76143386 AAGCTCACAAAGAGCCATTAATCAGG
1 AAGCTCACAAAGAGCCATTAATCAGG
*
76143412 AAGCTCACAAATG-GCC--T-ATTAGG
1 AAGCTCACAAA-GAGCCATTAATCAGG
* * *
76143435 AAGCTTATC-CAG-GCAATATAAT-AGG
1 AAGCTCA-CAAAGAGCCAT-TAATCAGG
*
76143460 AAGCTCA-TAAGAGCCA-TAATCAGG
1 AAGCTCACAAAGAGCCATTAATCAGG
* **** *
76143484 AAGTTCACAAAGAATTTTTAATCAAG
1 AAGCTCACAAAGAGCCATTAATCAGG
76143510 AAGCTCACAAAGAGCC-TTCAATCAGG
1 AAGCTCACAAAGAGCCATT-AATCAGG
76143536 -AGCTC
1 AAGCTC
76143541 CAGATAGCCA
Statistics
Matches: 98, Mismatches: 19, Indels: 25
0.69 0.13 0.18
Matches are distributed among these distances:
22 3 0.03
23 16 0.16
24 13 0.13
25 24 0.24
26 41 0.42
27 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.21
Consensus pattern (26 bp):
AAGCTCACAAAGAGCCATTAATCAGG
Found at i:76149223 original size:52 final size:52
Alignment explanation
Indices: 76149081--76149247 Score: 192
Period size: 52 Copynumber: 3.2 Consensus size: 52
76149071 TCTTACACGG
* * *
76149081 ATCACATAACATACCGATGCCATATCCCATCTATGGTCTTATACGGAATCACATT
1 ATCACAT--CATACCGATGCCATAACCCAGCTATGGTCTTATACGGAAGCACA-T
* * * * *
76149136 ATCACATCACACCGATGCCATAGCCCAGTTGTGGTCTTATACGGGAA-CACAA
1 ATCACATCATACCGATGCCATAACCCAGCTATGGTCTTATAC-GGAAGCACAT
** *
76149188 ATCACATTGTACCGATGCCATAACCTAGCTATGGTCTTATACGGAAGCACAT
1 ATCACATCATACCGATGCCATAACCCAGCTATGGTCTTATACGGAAGCACAT
76149240 ATCACATC
1 ATCACATC
76149248 TTTTCCGTCA
Statistics
Matches: 95, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
51 4 0.04
52 46 0.48
53 34 0.36
54 4 0.04
55 7 0.07
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (52 bp):
ATCACATCATACCGATGCCATAACCCAGCTATGGTCTTATACGGAAGCACAT
Found at i:76151905 original size:28 final size:28
Alignment explanation
Indices: 76151861--76151914 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
76151851 CTTATATTAT
* *
76151861 TATATTTTATTTAAATA-AGTTTTAATC
1 TATATTTGATTTAAATATAATTTTAATC
*
76151888 TATATCTTGATTTTAATATAATTTTAA
1 TATAT-TTGATTTAAATATAATTTTAA
76151915 ATTAATTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 5 0.23
28 10 0.45
29 7 0.32
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (28 bp):
TATATTTGATTTAAATATAATTTTAATC
Found at i:76155600 original size:19 final size:19
Alignment explanation
Indices: 76155564--76155602 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
76155554 TATTATTAAT
**
76155564 ATATTTATAATTGTAATAA
1 ATATTTATAATTAAAATAA
*
76155583 ATATTTATTATTAAAATAA
1 ATATTTATAATTAAAATAA
76155602 A
1 A
76155603 ATTAAAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:76155655 original size:29 final size:30
Alignment explanation
Indices: 76155590--76155655 Score: 91
Period size: 29 Copynumber: 2.2 Consensus size: 30
76155580 TAAATATTTA
76155590 TTATTAAAATAAAATTAAAATATTAAATAAT
1 TTATTAAAATAAAATT-AAATATTAAATAAT
*
76155621 TTATTAAAATAATAATT-TATATT-AATAAT
1 TTATTAAAATAA-AATTAAATATTAAATAAT
76155650 TTATTA
1 TTATTA
76155656 TATGATTAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
29 12 0.36
30 5 0.15
31 12 0.36
32 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (30 bp):
TTATTAAAATAAAATTAAATATTAAATAAT
Found at i:76155656 original size:16 final size:16
Alignment explanation
Indices: 76155609--76155658 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
76155599 TAAAATTAAA
76155609 ATATTAAATAATTTATT
1 ATATT-AATAATTTATT
* *
76155626 AAAATAATAA--T-TT
1 ATATTAATAATTTATT
76155639 ATATTAATAATTTATT
1 ATATTAATAATTTATT
76155655 ATAT
1 ATAT
76155659 GATTAGATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 7
0.70 0.11 0.19
Matches are distributed among these distances:
13 10 0.38
14 1 0.04
15 1 0.04
16 11 0.42
17 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATTAATAATTTATT
Found at i:76166299 original size:46 final size:46
Alignment explanation
Indices: 76166227--76166399 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
76166217 CCGTTCTCAG
*
76166227 ATGCCGATGCATGTCTCAGACATGTCTTACACTGGCTTACATCTCGA
1 ATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCT-GA
* * * * *
76166274 A-GCTGATGCATGTCCCAGACATGTCTTTCACTAGCTTTCGTCTGA
1 ATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTGA
*
76166319 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATG-
1 ATGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTGA
* *
76166367 -TGGCCGGTGCATGTCCTAGACATGTCTTACACT
1 AT-GCCGATGCATGTCCCAGACATGTCTTACACT
76166400 AGAACACAAA
Statistics
Matches: 107, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
45 3 0.03
46 52 0.49
47 29 0.27
48 20 0.19
49 3 0.03
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (46 bp):
ATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTGA
Found at i:76166388 original size:94 final size:92
Alignment explanation
Indices: 76166227--76166401 Score: 228
Period size: 94 Copynumber: 1.9 Consensus size: 92
76166217 CCGTTCTCAG
* * *
76166227 ATGCCGATGCATGTCTCAGACATGTCTTACACTGGCTTACATCTCGAAGCTGATGCATGTCCCAG
1 ATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAAGCCGATGCATGTCCCAG
*
76166292 ACATGTCTTTCACTAGCTTTCGTCTGA
66 ACATGTCTTACACTAGCTTTCGTCTGA
** *
76166319 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGGTGCATGTC
1 ATGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAAGCCGATGCATGTC
*
76166382 CTAGACATGTCTTACACTAG
62 CCAGACATGTCTTACACTAG
76166402 AACACAAATA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 9 0.13
93 13 0.18
94 47 0.66
95 2 0.03
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (92 bp):
ATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAAGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCTTTCGTCTGA
Found at i:76166780 original size:29 final size:30
Alignment explanation
Indices: 76166737--76166818 Score: 121
Period size: 30 Copynumber: 2.8 Consensus size: 30
76166727 CATAATTGGG
*
76166737 CAAAATGACCATTTTGTCCCTAGA-TTCCA
1 CAAAATGACCATTTTGCCCCTAGACTTCCA
*
76166766 TAAAATGACCATTTTGCCCCTAGACTTCCA
1 CAAAATGACCATTTTGCCCCTAGACTTCCA
* *
76166796 CAAAATGACAATTTTACCCCTAG
1 CAAAATGACCATTTTGCCCCTAG
76166819 GTCTGAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
29 22 0.47
30 25 0.53
ACGTcount: A:0.33, C:0.28, G:0.10, T:0.29
Consensus pattern (30 bp):
CAAAATGACCATTTTGCCCCTAGACTTCCA
Found at i:76170537 original size:22 final size:22
Alignment explanation
Indices: 76170511--76170559 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
76170501 TCATGTTTCA
*
76170511 AGACAAATGAGTGTATGTCTTG
1 AGACAAAGGAGTGTATGTCTTG
* *
76170533 GGACAAAGGAGTTTATGTCTTG
1 AGACAAAGGAGTGTATGTCTTG
76170555 AGACA
1 AGACA
76170560 TGACCTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (22 bp):
AGACAAAGGAGTGTATGTCTTG
Found at i:76172059 original size:24 final size:24
Alignment explanation
Indices: 76172030--76172087 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
76172020 TTTGAAGTTA
*
76172030 CCTGTTATAGGCTCACATGAGCTT
1 CCTGTTATAGACTCACATGAGCTT
* * * * *
76172054 CTTGTTTTAAACTCTCATGAGTTT
1 CCTGTTATAGACTCACATGAGCTT
76172078 CCTGTTATAG
1 CCTGTTATAG
76172088 CCCAGATAAG
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.41
Consensus pattern (24 bp):
CCTGTTATAGACTCACATGAGCTT
Found at i:76179228 original size:7 final size:8
Alignment explanation
Indices: 76179211--76179235 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
76179201 AAATTAATTA
76179211 TTTATTTT
1 TTTATTTT
76179219 TTTATTTT
1 TTTATTTT
76179227 TTTATTTT
1 TTTATTTT
76179235 T
1 T
76179236 AAATGATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTATTTT
Found at i:76189036 original size:47 final size:47
Alignment explanation
Indices: 76188745--76189058 Score: 254
Period size: 46 Copynumber: 6.7 Consensus size: 47
76188735 GTATAATGCT
* ** *
76188745 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACGT-TAAGCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATGT-AGCC
* * * *
76188792 GATGCCATGTCCCAAACATGGTCTTACACTAACTCTCACGTATCTTTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA--TAT-GTAGCC
* * * *
76188842 GATGCCATGTCCCAGACATGGTCTTAAACT-G-ACACATCATGTAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATGTAGCC
** *
76188888 GATG-CATGTCTTAGACAT-GTCTTACACTAGCT-TACATCTCG-AGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAT-GTA-GCC
* * * **
76188934 GATG-CATGTCCCAAACAT-GTCTTACACTAGCTATCATCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATGTA-GCC
* * *
76188980 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATGTAGCC
76189028 GATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
76189059 ACACAAATAT
Statistics
Matches: 215, Mismatches: 37, Indels: 31
0.76 0.13 0.11
Matches are distributed among these distances:
44 9 0.04
45 15 0.07
46 67 0.31
47 65 0.30
48 26 0.12
49 2 0.01
50 30 0.14
51 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATGTAGCC
Found at i:76192975 original size:26 final size:26
Alignment explanation
Indices: 76192936--76193045 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
76192926 TGATACAAAT
*
76192936 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
76192962 TGATAATGGCTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
76192988 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
76193014 TGGTAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76193040 TGATAA
1 TGATAA
76193046 GAATATCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:76198759 original size:75 final size:75
Alignment explanation
Indices: 76198623--76198772 Score: 264
Period size: 75 Copynumber: 2.0 Consensus size: 75
76198613 CTAGAGTAGG
* *
76198623 GTTACGAGGTATTACCGAACAATTCACAACATTAAGCATACATTTATCAAGTATAAGGCATTCAT
1 GTTACGAGGTATTACCGAACAATTCACAACATTAAGCATACATTTATCAAGCATAAAGCATTCAT
76198688 TCTCATAAAT
66 TCTCATAAAT
* *
76198698 GTTATGAGGTATTACTGAACAATTCACAACATTAAGCATACATTTATCAAGCATAAAGCATTCAT
1 GTTACGAGGTATTACCGAACAATTCACAACATTAAGCATACATTTATCAAGCATAAAGCATTCAT
76198763 TCTCATAAAT
66 TCTCATAAAT
76198773 CATTCAACAC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.31
Consensus pattern (75 bp):
GTTACGAGGTATTACCGAACAATTCACAACATTAAGCATACATTTATCAAGCATAAAGCATTCAT
TCTCATAAAT
Found at i:76207725 original size:8 final size:8
Alignment explanation
Indices: 76207712--76207740 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
76207702 TTATGTTTAG
76207712 TATATTAT
1 TATATTAT
76207720 TATATTAT
1 TATATTAT
76207728 TATATTAT
1 TATATTAT
76207736 TATAT
1 TATAT
76207741 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:76207773 original size:5 final size:5
Alignment explanation
Indices: 76207763--76207799 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
76207753 TTATGTTTTA
76207763 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
76207800 AAACTAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:76207846 original size:21 final size:20
Alignment explanation
Indices: 76207807--76207850 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
76207797 TATAAACTAA
*
76207807 AGAAACAAAAGAAAGGAAAT
1 AGAAACAAAAGAAACGAAAT
*
76207827 AGAAACAGAATGAAACGAAAT
1 AGAAACA-AAAGAAACGAAAT
76207848 AGA
1 AGA
76207851 GAGCAGGGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.66, C:0.07, G:0.20, T:0.07
Consensus pattern (20 bp):
AGAAACAAAAGAAACGAAAT
Found at i:76209090 original size:15 final size:15
Alignment explanation
Indices: 76209070--76209126 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
76209060 CGATGAATTT
*
76209070 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
76209085 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
76209100 ATTGAAATTATATTG
1 ATTGAAATTATATTG
76209115 ATTG-AATTATAT
1 ATTGAAATTATAT
76209127 AATATATATG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:76209528 original size:23 final size:22
Alignment explanation
Indices: 76209498--76209603 Score: 119
Period size: 21 Copynumber: 4.9 Consensus size: 22
76209488 GCTTTATCGA
* *
76209498 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTGTGTGTCGTA-T
76209521 TCAGGCACCTTGTGTGTCGTAT
1 TCAGGCACCTTGTGTGTCGTAT
*
76209543 T-AGGCACCTCGTGTGTCGTA-
1 TCAGGCACCTTGTGTGTCGTAT
*
76209563 TCAGGCACCTCGTGTGTCGT-T
1 TCAGGCACCTTGTGTGTCGTAT
* * *
76209584 TTAGGCACTTTATGTGTCGT
1 TCAGGCACCTTGTGTGTCGT
76209604 TTACTGATCA
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
20 1 0.01
21 52 0.70
22 2 0.03
23 19 0.26
ACGTcount: A:0.14, C:0.22, G:0.26, T:0.38
Consensus pattern (22 bp):
TCAGGCACCTTGTGTGTCGTAT
Found at i:76209600 original size:42 final size:43
Alignment explanation
Indices: 76209500--76209603 Score: 147
Period size: 42 Copynumber: 2.4 Consensus size: 43
76209490 TTTATCGATC
*
76209500 AGGCACTTTATGTGTCGTATTTCAGGCACCTTGTGTGTCGTATT
1 AGGCACTTTATGTGTCGTA-TTCAGGCACCTCGTGTGTCGTATT
* ** *
76209544 AGGCACCTCGTGTGTCGTA-TCAGGCACCTCGTGTGTCGTTTT
1 AGGCACTTTATGTGTCGTATTCAGGCACCTCGTGTGTCGTATT
76209586 AGGCACTTTATGTGTCGT
1 AGGCACTTTATGTGTCGT
76209604 TTACTGATCA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 36 0.69
44 16 0.31
ACGTcount: A:0.14, C:0.21, G:0.27, T:0.38
Consensus pattern (43 bp):
AGGCACTTTATGTGTCGTATTCAGGCACCTCGTGTGTCGTATT
Found at i:76211855 original size:32 final size:31
Alignment explanation
Indices: 76211783--76211856 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 31
76211773 TTATTTCATT
* **
76211783 ATCCAACAAGCTTAAAACATAATAAATTCACT
1 ATCCAACAA-ATTAAAACATAATAAATTCAAA
* *
76211815 ATCTAACAAATTAAAGACATAATAATTTCAAA
1 ATCCAACAAATTAAA-ACATAATAAATTCAAA
76211847 ATCCAACAAA
1 ATCCAACAAA
76211857 CTAATTTCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 5 0.14
32 30 0.86
ACGTcount: A:0.54, C:0.19, G:0.03, T:0.24
Consensus pattern (31 bp):
ATCCAACAAATTAAAACATAATAAATTCAAA
Found at i:76212331 original size:19 final size:20
Alignment explanation
Indices: 76212307--76212345 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
76212297 TTTTCAGGCC
76212307 TCTGAGCACTAAACT-TTTT
1 TCTGAGCACTAAACTCTTTT
76212326 TCTGAGCACTAAACTCTTTT
1 TCTGAGCACTAAACTCTTTT
76212346 AAATGATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (20 bp):
TCTGAGCACTAAACTCTTTT
Found at i:76214249 original size:10 final size:12
Alignment explanation
Indices: 76214230--76214261 Score: 50
Period size: 10 Copynumber: 2.8 Consensus size: 12
76214220 CCATTCAATT
76214230 TAATTATTTAAA
1 TAATTATTTAAA
76214242 -AA-TATTTAAA
1 TAATTATTTAAA
76214252 TAATTATTTA
1 TAATTATTTA
76214262 TTTTTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
10 8 0.44
11 4 0.22
12 6 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TAATTATTTAAA
Found at i:76215275 original size:2 final size:2
Alignment explanation
Indices: 76215268--76215314 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
76215258 TTAATATCTG
*
76215268 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76215310 AT AT A
1 AT AT A
76215315 CTCAATATGA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:76224458 original size:14 final size:15
Alignment explanation
Indices: 76224434--76224465 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
76224424 CTCGTAGCTT
76224434 CAATCTGCTCCACTG
1 CAATCTGCTCCACTG
76224449 CAAT-TGCTCCACTG
1 CAATCTGCTCCACTG
76224463 CAA
1 CAA
76224466 CTTCAGAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.25, C:0.38, G:0.12, T:0.25
Consensus pattern (15 bp):
CAATCTGCTCCACTG
Found at i:76224566 original size:44 final size:44
Alignment explanation
Indices: 76224453--76224984 Score: 359
Period size: 44 Copynumber: 11.7 Consensus size: 44
76224443 CCACTGCAAT
* *
76224453 TGCTCCACTGCAACTTCAGAGAGATAAGATTTTCTA-TTTTCAATC
1 TGCTCCACTGCAACTTCAGAGAGATAAGA-TTTATAGCTTT-AATC
* * * *
76224498 TACTCCACTGTAACTTCAGGGAGATAAGGTTTATAGCTTTAATC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATC
* ** * * * **
76224542 TGCTCTACTGTGACTTTAGAGAGATAAGATTTGCTATCTTCGATC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTT-ATAGCTTTAATC
* * * *
76224587 TACTCTACTACAACTTCAGAGAGATAAGATTTGTAATTTGTAGCTTTAAGC
1 TGCTCCACTGCAACTTCAGAGAGATAAGA-TT-T-A----TAGCTTTAATC
* *
76224638 TGTTCCACTGCAACTTCAGGGAGATAAGATTTATAGCTTTAATC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATC
* * * * * *
76224682 TGCTCTACTGCAATTTCAGAGAGATAAGATTTGCTATCTTCAGTC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTT-ATAGCTTTAATC
* * * * * *
76224727 TGCTCCACTGCAACTTTAGGGAGATAAGACTTGTA-ATTTCAACC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTATAGCTTT-AATC
* * * * * * *
76224771 TACTCTATTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATC
* *
76224815 TGCTCCACTGCAACTTCAGGGAGATAAGATTCATAGCCTGTCTTCAATC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTATAG-C--T-TT-AATC
* * * * ** *
76224864 TACTCCACTGTAACTTTA-AGGAGATAAGATTTGTTTATTTTTAACC
1 TGCTCCACTGCAACTTCAGA-GAGATAAGA-TT-TATAGCTTTAATC
* * * * * * *
76224910 TGCTCCACTGCAATTTTAGGGAGATAAGGTTTGTGGCTTTAGTC
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATC
*
76224954 TGCTCCACTGCAACTTCAGGGAGATAAGATT
1 TGCTCCACTGCAACTTCAGAGAGATAAGATT
76224985 CGCCATGGTA
Statistics
Matches: 377, Mismatches: 90, Indels: 41
0.74 0.18 0.08
Matches are distributed among these distances:
43 2 0.01
44 172 0.46
45 101 0.27
46 28 0.07
47 4 0.01
48 4 0.01
49 29 0.08
50 4 0.01
51 33 0.09
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGAGAGATAAGATTTATAGCTTTAATC
Found at i:76224604 original size:89 final size:89
Alignment explanation
Indices: 76224453--76224981 Score: 438
Period size: 89 Copynumber: 5.8 Consensus size: 89
76224443 CCACTGCAAT
* * * * * *
76224453 TGCTCCACTGCAACTTCAGAGAGATAAGATTTTCTATTTTCAATCTACTCCACTGTAACTTCAGG
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTACTCTACTGCAACTTCAGA
*
76224518 GAGATAAGGTTTATAGCTTTAATC
66 GAGATAAGGTTTGTAGCTTTAATC
* ** * * * *
76224542 TGCTCTACTGTGACTTTAGAGAGATAAGATTTGCTATCTTCGATCTACTCTACTACAACTTCAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTACTCTACTGCAACTTCAGA
*
76224607 GAGATAAGATTTGTAATTTGTAGCTTTAAGC
66 GAGATAAG----G---TTTGTAGCTTTAATC
* * * * * *
76224638 TGTTCCACTGCAACTTCAGGGAGATAAGATTT-ATAGCTTTAATCTGCTCTACTGCAATTTCAGA
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTACTCTACTGCAACTTCAGA
* * * *
76224702 GAGATAAGATTTGCTATCTTCAGTC
66 GAGATAAGGTTTG-TAGCTTTAATC
* * * *
76224727 TGCTCCACTGCAACTTTAGGGAGATAAGACTTG-TAAT-TTCAACCTACTCTATTGCAACTTCAG
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCT-ATCTTCAATCTACTCTACTGCAACTTCAG
* *
76224790 GGAGATAAGGTTTGTGGCTTTAATC
65 AGAGATAAGGTTTGTAGCTTTAATC
* * *
76224815 TGCTCCACTGCAACTTCAGGGAGATAAGATTCATAGCCTGTCTTCAATCTACTCCACTGTAACTT
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT--T-G-CTATCTTCAATCTACTCTACTGCAACTT
* * ** *
76224880 TA-AGGAGATAAGATTTGTTTATTTTTAACC
62 CAGA-GAGATAAGGTTTG--TAGCTTTAATC
* * * ** * * * * *
76224910 TGCTCCACTGCAATTTTAGGGAGATAAGGTTTG-TGGCTTTAGTCTGCTCCACTGCAACTTCAGG
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTACTCTACTGCAACTTCAGA
76224974 GAGATAAG
66 GAGATAAG
76224982 ATTCGCCATG
Statistics
Matches: 350, Mismatches: 70, Indels: 39
0.76 0.15 0.08
Matches are distributed among these distances:
88 40 0.11
89 132 0.38
90 33 0.09
91 1 0.00
92 2 0.01
93 35 0.10
95 68 0.19
96 39 0.11
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (89 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAATCTACTCTACTGCAACTTCAGA
GAGATAAGGTTTGTAGCTTTAATC
Found at i:76224709 original size:140 final size:136
Alignment explanation
Indices: 76224455--76224984 Score: 553
Period size: 140 Copynumber: 3.9 Consensus size: 136
76224445 ACTGCAATTG
* * * * *
76224455 CTCCACTGCAACTTCAGAGAGATAAGATTT-TCTATTTTC---AATCTACTCCACTGTAACTTCA
1 CTCCACTGCAACTTTAGAGAGATAAGATTTGT-AATTTTCTTTAACCTGCTCCACTGCAACTTCA
* ** *
76224516 GGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGTGACTTTAGAGAGATAAGATTTGCTATCT
65 GGGAGATAAGGTTTATAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCT
76224581 TCGATCTA
130 TC-ATCTA
* * * * *
76224589 CTCTACTACAACTTCAGAGAGATAAGATTTGTAATTTGTAGCTTTAAGCTGTTCCACTGCAACTT
1 CTCCACTGCAACTTTAGAGAGATAAGATTTGTAATTT-T--CTTTAACCTGCTCCACTGCAACTT
* * *
76224654 CAGGGAGATAAGATTTATAGCTTTAATCTGCTCTACTGCAATTTCAGAGAGATAAGATTTGCTAT
63 CAGGGAGATAAGGTTTATAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTAT
*
76224719 CTTCAGTCTG
128 CTTCA-TCTA
* * * * *
76224729 CTCCACTGCAACTTTAGGGAGATAAGACTTGTAA-TTTC---AACCTACTCTATTGCAACTTCAG
1 CTCCACTGCAACTTTAGAGAGATAAGATTTGTAATTTTCTTTAACCTGCTCCACTGCAACTTCAG
* * * *
76224790 GGAGATAAGGTTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCATAGCCTG
66 GGAGATAAGGTTTATAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATT--T-G-CTA
76224855 TCTTCAATCTA
127 TCTTC-ATCTA
* * *
76224866 CTCCACTGTAACTTTA-AGGAGATAAGATTTGT--TTATT-TTTAACCTGCTCCACTGCAATTTT
1 CTCCACTGCAACTTTAGA-GAGATAAGATTTGTAATT-TTCTTTAACCTGCTCCACTGCAACTTC
* * * *
76224927 AGGGAGATAAGGTTTGTGGCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATT
64 AGGGAGATAAGGTTTATAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATT
76224985 CGCCATGGTA
Statistics
Matches: 337, Mismatches: 40, Indels: 33
0.82 0.10 0.08
Matches are distributed among these distances:
133 68 0.20
134 32 0.09
135 3 0.01
136 3 0.01
137 41 0.12
138 2 0.01
139 76 0.23
140 112 0.33
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (136 bp):
CTCCACTGCAACTTTAGAGAGATAAGATTTGTAATTTTCTTTAACCTGCTCCACTGCAACTTCAG
GGAGATAAGGTTTATAGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTT
CATCTA
Done.