Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 251 of 335
Found at i:76250229 original size:23 final size:22
Alignment explanation
Indices: 76250202--76250266 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 22
76250192 ACGTATAAGT
76250202 AAATACAATAATAATAATAATA
1 AAATACAATAATAATAATAATA
*
76250224 ATAATACAGTAATTAATTTAATAATA
1 A-AATACAATAA-TAA--TAATAATA
* *
76250250 AAATAGAAAAATAATAA
1 AAATACAATAATAATAA
76250267 AAAAGTACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
22 4 0.11
23 9 0.26
24 6 0.17
25 7 0.20
26 9 0.26
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (22 bp):
AAATACAATAATAATAATAATA
Found at i:76252833 original size:40 final size:39
Alignment explanation
Indices: 76252789--76252914 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
76252779 GGGACTCAAC
*
76252789 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
76252829 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
76252869 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
76252909 CCGGAT
1 CCGGAT
76252915 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:76252873 original size:80 final size:80
Alignment explanation
Indices: 76252728--76252914 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
76252718 GCTACACATT
* * *
76252728 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
76252792 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
76252808 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
76252871 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
76252889 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
76252915 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:76258768 original size:40 final size:39
Alignment explanation
Indices: 76258724--76258849 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
76258714 GGGACTCAAC
*
76258724 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
76258764 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
76258804 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
76258844 CCGGAT
1 CCGGAT
76258850 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:76258808 original size:80 final size:80
Alignment explanation
Indices: 76258663--76258849 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
76258653 GCTACACATT
* * *
76258663 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
76258727 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
76258743 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
76258806 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
76258824 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
76258850 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:76265008 original size:31 final size:34
Alignment explanation
Indices: 76264937--76265009 Score: 80
Period size: 36 Copynumber: 2.2 Consensus size: 34
76264927 ATGATTAAAC
* *
76264937 AATTCAATAATATAAATAGTACAAAATATGAAATTT
1 AATTTAATAATATAAATAGT--AAAATATGAAATTA
*
76264973 AATTTAATAATATAAATAGT-AGATAT-AAA-TA
1 AATTTAATAATATAAATAGTAAAATATGAAATTA
76265004 AATTTA
1 AATTTA
76265010 TTACTATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
31 7 0.21
32 3 0.09
33 5 0.15
36 19 0.56
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (34 bp):
AATTTAATAATATAAATAGTAAAATATGAAATTA
Found at i:76269364 original size:46 final size:47
Alignment explanation
Indices: 76269265--76269477 Score: 190
Period size: 46 Copynumber: 4.6 Consensus size: 47
76269255 TTATGAGAGC
* *
76269265 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAGAC--AAGT
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGACATAAGT
76269311 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGACATAAGT
1 -C-AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACATAAGT
* * * *
76269359 CAGTGTAAGA-CATGTCTGGGATATGCATCGG-CTATGGGATGAT-AGT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGA-CATAAGT
* * * * *
76269405 CAGGGTAAGACCATGTCTGGGACATGGGATCGACAT-GAGACATGAG-
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGACATAAGT
* *
76269451 CTAGTGTAAGACCGTGTCTAGGACATG
1 C-AGTGTAAGACCATGTCTGGGACATG
76269478 GCGTCAGCAC
Statistics
Matches: 140, Mismatches: 16, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
45 2 0.01
46 62 0.44
47 57 0.41
48 18 0.13
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACATAAGT
Found at i:76274199 original size:46 final size:47
Alignment explanation
Indices: 76274101--76274232 Score: 239
Period size: 46 Copynumber: 2.8 Consensus size: 47
76274091 TGTCGACTAC
*
76274101 TGTTAAAGTTCCGGATTTGTTCCGATGAAGTACTTTGTGTACTATAA
1 TGTTAAAGTTCCGGATTTGTTCCGATGAAGCACTTTGTGTACTATAA
76274148 TGTTAAAGTTCCGGATTTGTTCCGATGAAG-ACTTTGTGTACTATAA
1 TGTTAAAGTTCCGGATTTGTTCCGATGAAGCACTTTGTGTACTATAA
*
76274194 TGTTAAAGTTCCGGATTTGTTCCGATGAAGCACTATGTG
1 TGTTAAAGTTCCGGATTTGTTCCGATGAAGCACTTTGTG
76274233 CTTATCCCGG
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
46 46 0.55
47 37 0.45
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.39
Consensus pattern (47 bp):
TGTTAAAGTTCCGGATTTGTTCCGATGAAGCACTTTGTGTACTATAA
Found at i:76281489 original size:15 final size:15
Alignment explanation
Indices: 76281469--76281499 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
76281459 CCGGATTTGT
76281469 TCCGATGAAGCACTA
1 TCCGATGAAGCACTA
76281484 TCCGATGAAGCACTA
1 TCCGATGAAGCACTA
76281499 T
1 T
76281500 GTGCTTATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (15 bp):
TCCGATGAAGCACTA
Found at i:76287865 original size:12 final size:13
Alignment explanation
Indices: 76287850--76287882 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76287840 GCAAACGTGA
76287850 GAAAGAAAG-AAG
1 GAAAGAAAGAAAG
76287862 GAAAGAAAGAAAG
1 GAAAGAAAGAAAG
*
76287875 AAAAGAAA
1 GAAAGAAA
76287883 AGGGAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (13 bp):
GAAAGAAAGAAAG
Found at i:76287884 original size:5 final size:4
Alignment explanation
Indices: 76287849--76287882 Score: 50
Period size: 4 Copynumber: 8.2 Consensus size: 4
76287839 AGCAAACGTG
*
76287849 AGAA AGAA AGAA GGAA AGAA AGAA AGAAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AG-AA AGAA A
76287883 AGGGAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 23 0.85
5 4 0.15
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:76288701 original size:47 final size:47
Alignment explanation
Indices: 76288637--76288747 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
76288627 GACATTGAGT
*
76288637 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
76288684 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
76288731 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
76288748 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:76295048 original size:30 final size:31
Alignment explanation
Indices: 76295014--76295072 Score: 93
Period size: 32 Copynumber: 1.9 Consensus size: 31
76295004 TTAGATATTG
76295014 ATTATG-TTAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTAAGCTTGTTAGATATTGAATTT
*
76295044 ATTATGTTTTAAGCTTGTTGGATATTGAA
1 ATTATG-TTTAAGCTTGTTAGATATTGAA
76295073 ATGATTGACA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 6 0.23
32 20 0.77
ACGTcount: A:0.29, C:0.03, G:0.19, T:0.49
Consensus pattern (31 bp):
ATTATGTTTAAGCTTGTTAGATATTGAATTT
Found at i:76296326 original size:20 final size:19
Alignment explanation
Indices: 76296281--76296348 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 19
76296271 AAATCATTGC
*
76296281 AATATATGTAAAAA-T-TT
1 AATATATATAAAAATTATT
76296298 AA-A-ATATAAAAATTATT
1 AATATATATAAAAATTATT
* *
76296315 -ATATGTATATAAATTTATT
1 AATATATATA-AAAATTATT
*
76296334 AATATATGTAAAAAT
1 AATATATATAAAAAT
76296349 AACTTTTACG
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
15 8 0.21
16 3 0.08
17 5 0.13
18 4 0.10
19 12 0.31
20 7 0.18
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (19 bp):
AATATATATAAAAATTATT
Found at i:76304531 original size:43 final size:43
Alignment explanation
Indices: 76304433--76304556 Score: 203
Period size: 43 Copynumber: 2.8 Consensus size: 43
76304423 TGTCGACTAC
*
76304433 TGTTAAAGTTCCGGATTTGTTCCGATGAAGTACTTTGTGTACTATAA
1 TGTTAAAGTTCCGGATTTGTTCCGATGAAGCAC----TGTACTATAA
76304480 TGTTAAAGTTCCGGATTTGTTCCGATGAAGCACTGTACTATAA
1 TGTTAAAGTTCCGGATTTGTTCCGATGAAGCACTGTACTATAA
76304523 TGTTAAAGTTCCGGATTTGTTCCGATGAAGCACT
1 TGTTAAAGTTCCGGATTTGTTCCGATGAAGCACT
76304557 ATGTGCTTAT
Statistics
Matches: 76, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
43 44 0.58
47 32 0.42
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (43 bp):
TGTTAAAGTTCCGGATTTGTTCCGATGAAGCACTGTACTATAA
Found at i:76310050 original size:155 final size:150
Alignment explanation
Indices: 76309672--76310099 Score: 434
Period size: 155 Copynumber: 2.8 Consensus size: 150
76309662 AAATTTTGAA
* * * * *
76309672 TTTTTTT-AAAAAGAGAAAATTTAAATTTTAACAAATAAAAATTTGTTTTTTTTTTGT-TATTTT
1 TTTTTTTAAAAAAGAGAAAATTTAGATTTTGA-AAATAAAAA--TCTATTTTTTTAGTCT-TTTT
* * * * * * *
76309735 AAAGGAAATTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTTTTTCAAGTATTTCAAAGTAAAA
62 AAAGGAAAATTTAAAATTTTAAAATAAAATTTTGA--ATTTTTTTTCAACTATTTTAAAATAAAA
* *
76309800 TCTTTAATATTTAAGAAAAATAACAT
125 GCTTTAATATATAAGAAAAATAACAT
* *
76309826 TTTTTTTCAAAAAAAAAAGAGAAATTTTAGATTTTGAAAAATAAAAATCTACTTTTTTTAGTCAT
1 TTTTTTT-----AAAAAAGAGAAAATTTAGATTTTG-AAAATAAAAATCTA-TTTTTTTAGTCTT
*
76309891 TTTAAAGGAAAATTTAAAATTTAAAAATAAAATTTTGAATTTTTTTTCAACTATTTTAAAATAAA
59 TTTAAAGGAAAATTTAAAATTTTAAAATAAAATTTTGAATTTTTTTTCAACTATTTTAAAATAAA
* * **
76309956 AGCTTTAATCTATAAGAAAATTAGTTAT
124 AGCTTTAATATATAAGAAAAATA-ACAT
76309984 TTTTTTTAAAAAAGGGAGAAAATTTAGATTTTGAAAATAAAAATCTATTTTTTTAAAGTCTTTTT
1 TTTTTTTAAAAAA--GAGAAAATTTAGATTTTGAAAATAAAAATCTATTTTTTT--AGTCTTTTT
* * * *
76310049 AAAGGAAAGTTTAAATTTTTAAAAT-AAAGTTT-AAATTTTTTT-AACTATTTT
62 AAAGGAAAATTTAAAATTTTAAAATAAAATTTTGAATTTTTTTTCAACTATTTT
76310100 CTTCCACATT
Statistics
Matches: 232, Mismatches: 28, Indels: 30
0.80 0.10 0.10
Matches are distributed among these distances:
152 9 0.04
153 22 0.09
154 27 0.12
155 47 0.20
157 42 0.18
158 11 0.05
159 44 0.19
160 29 0.12
161 1 0.00
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (150 bp):
TTTTTTTAAAAAAGAGAAAATTTAGATTTTGAAAATAAAAATCTATTTTTTTAGTCTTTTTAAAG
GAAAATTTAAAATTTTAAAATAAAATTTTGAATTTTTTTTCAACTATTTTAAAATAAAAGCTTTA
ATATATAAGAAAAATAACAT
Found at i:76310069 original size:20 final size:20
Alignment explanation
Indices: 76310044--76310088 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
76310034 TTTTAAAGTC
*
76310044 TTTTTAAAGGAAAGTTTAAA
1 TTTTTAAAAGAAAGTTTAAA
*
76310064 TTTTTAAAATAAAGTTTAAA
1 TTTTTAAAAGAAAGTTTAAA
76310084 TTTTT
1 TTTTT
76310089 TTAACTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (20 bp):
TTTTTAAAAGAAAGTTTAAA
Found at i:76310088 original size:21 final size:21
Alignment explanation
Indices: 76310035--76310089 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
76310025 AATCTATTTT
*
76310035 TTTAAAGTCTTTTTAAAGGAAAG
1 TTTAAA-T-TTTTTAAAAGAAAG
*
76310058 TTTAAA-TTTTTAAAATAAAG
1 TTTAAATTTTTTAAAAGAAAG
76310078 TTTAAATTTTTT
1 TTTAAATTTTTT
76310090 TAACTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 18 0.62
21 5 0.17
23 6 0.21
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (21 bp):
TTTAAATTTTTTAAAAGAAAG
Found at i:76317435 original size:6 final size:6
Alignment explanation
Indices: 76317425--76317483 Score: 68
Period size: 6 Copynumber: 9.7 Consensus size: 6
76317415 AACCCAATCT
*
76317425 TTTTTT TTTTTA TTTTTA TTTTTA TTATTTA TTATTT- TCTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TT-TTTA TT-TTTA T-TTTTA TTTTTA
76317475 -TTTTA TTTT
1 TTTTTA TTTT
76317484 AGTTAAATAT
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
5 5 0.10
6 31 0.65
7 12 0.25
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:76317459 original size:16 final size:15
Alignment explanation
Indices: 76317424--76317484 Score: 79
Period size: 16 Copynumber: 3.9 Consensus size: 15
76317414 CAACCCAATC
76317424 TTTT-TTTTTTTTAT
1 TTTTATTTTTTTTAT
*
76317438 TTTTATTTTTATTAT
1 TTTTATTTTTTTTAT
76317453 TTATTATTTTCTTTTAT
1 TT-TTATTTT-TTTTAT
76317470 TTTTATTTTATTTTA
1 TTTTATTTT-TTTTA
76317485 GTTAAATATT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
14 4 0.10
15 11 0.27
16 19 0.46
17 7 0.17
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTATTTTTTTTAT
Found at i:76318650 original size:117 final size:117
Alignment explanation
Indices: 76318444--76318673 Score: 388
Period size: 117 Copynumber: 2.0 Consensus size: 117
76318434 TGTTTTCCAT
* *
76318444 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
76318509 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCA
**
76318561 GGTTATGAGTATGGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
****
76318626 CTACTTCGCGTCAAAAGGTTGTGTGACGTGTTGGGTAAAACTCCGCTA
66 CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTA
76318674 ACCGGAAATA
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 105 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (117 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
CTACTTCGCGTCAAAAGGTTGTGTGACGTGACAAGTAAAACTCCGCTAGCCA
Found at i:76322554 original size:16 final size:17
Alignment explanation
Indices: 76322533--76322565 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
76322523 CCGTGCAAAG
*
76322533 ACAAAATAA-ACAAAAA
1 ACAAAAAAATACAAAAA
76322549 ACAAAAAAATACAAAAA
1 ACAAAAAAATACAAAAA
76322566 TAAATCACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.82, C:0.12, G:0.00, T:0.06
Consensus pattern (17 bp):
ACAAAAAAATACAAAAA
Found at i:76338506 original size:2 final size:2
Alignment explanation
Indices: 76338499--76338530 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
76338489 TTAAATATTA
76338499 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
76338531 TAATACATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:76339643 original size:131 final size:131
Alignment explanation
Indices: 76339409--76339665 Score: 345
Period size: 131 Copynumber: 2.0 Consensus size: 131
76339399 TAATTATTCA
* * * * * *
76339409 TTTAAAAATTCCTTAAAACGAAGGCGATGTTCGATGTTTGGCAATTCGCGGAATCGTGCCCTATC
1 TTTAAAAACTCCTTAAAACGAAGGCAATATTCGATGTTTGGAAAATCGCGGAATAGTGCCCTATC
* *
76339474 GTGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCAAATGTCCCTTTAGAATTTCACTCATGT
66 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCAAATATCCCTTTAGAATTTCACTCATGT
76339539 C
131 C
* * *
76339540 TTTAAAAACTCTTTAAAGCGAAGGCAATATTTGATGTTTGGAAAATCAG-GGAATAGTGCCCTAT
1 TTTAAAAACTCCTTAAAACGAAGGCAATATTCGATGTTTGGAAAATC-GCGGAATAGTGCCCTAT
* *** * *
76339604 CGTGTTGGGTTTTGATTTCCCGTTTGTTCAAAATAATCAAATATTCCTTTGGAATTTCACTC
65 CGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCAAATATCCCTTTAGAATTTCACTC
76339666 GTGTTTTCTA
Statistics
Matches: 108, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
131 107 0.99
132 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (131 bp):
TTTAAAAACTCCTTAAAACGAAGGCAATATTCGATGTTTGGAAAATCGCGGAATAGTGCCCTATC
GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCAAATATCCCTTTAGAATTTCACTCATGT
C
Found at i:76343528 original size:9 final size:9
Alignment explanation
Indices: 76343511--76343547 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
76343501 ATTTTAGGGC
76343511 TTCAATCTT
1 TTCAATCTT
*
76343520 TTAAATCTT
1 TTCAATCTT
76343529 TTCAATCTT
1 TTCAATCTT
76343538 TTCAATCTT
1 TTCAATCTT
76343547 T
1 T
76343548 CTTGTATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.24, C:0.19, G:0.00, T:0.57
Consensus pattern (9 bp):
TTCAATCTT
Found at i:76344485 original size:26 final size:25
Alignment explanation
Indices: 76344456--76344567 Score: 71
Period size: 26 Copynumber: 4.2 Consensus size: 25
76344446 ATTATTCACC
76344456 TTAAATTGTGTTAGATATTATTTATT
1 TTAAATTGT-TTAGATATTATTTATT
* * * *
76344482 TTAAATTATGTCATATATTATCTATTT
1 TTAAATTGT-TTAGATATTATTTA-TT
* * *
76344509 TTGAATTGCTTTATATTTTATTTTATT
1 TTAAATTG-TTTAGATATTA-TTTATT
* * * *
76344536 TCAAATTGTTTTGTATTTTATTTATG
1 TTAAATTGTTTAG-ATATTATTTATT
76344562 TTAAAT
1 TTAAAT
76344568 CTTTTTCATA
Statistics
Matches: 67, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
26 33 0.49
27 30 0.45
28 4 0.06
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.60
Consensus pattern (25 bp):
TTAAATTGTTTAGATATTATTTATT
Found at i:76352007 original size:25 final size:28
Alignment explanation
Indices: 76351979--76352032 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
76351969 TACAAGTTTT
76351979 AAAAAATC-AAAAA-G-AAA-ATTTTAA
1 AAAAAATCTAAAAAGGTAAATATTTTAA
76352003 AAAAAATCTAAAAAGGTAAATATTTTAA
1 AAAAAATCTAAAAAGGTAAATATTTTAA
76352031 AA
1 AA
76352033 TATAAATACC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 8 0.31
25 5 0.19
26 1 0.04
27 3 0.12
28 9 0.35
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.24
Consensus pattern (28 bp):
AAAAAATCTAAAAAGGTAAATATTTTAA
Found at i:76359453 original size:19 final size:19
Alignment explanation
Indices: 76359419--76359460 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
76359409 CGTGTGACCC
*
76359419 TTTTTTCCCAAATTTTC-A
1 TTTTTTCCAAAATTTTCTA
76359437 TTTTTTCCAAAATTTTTCTA
1 TTTTTTCCAAAA-TTTTCTA
76359457 TTTT
1 TTTT
76359461 GGTTTCGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.52
19 5 0.24
20 5 0.24
ACGTcount: A:0.21, C:0.17, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTTTCCAAAATTTTCTA
Found at i:76359712 original size:27 final size:27
Alignment explanation
Indices: 76359673--76359815 Score: 232
Period size: 27 Copynumber: 5.3 Consensus size: 27
76359663 TACACGTCAG
76359673 GAAAGGAATGCCTTTGTGGCGCAATAT
1 GAAAGGAATGCCTTTGTGGCGCAATAT
* *
76359700 AAAAGGAATGCCTTTGTGGCGTAATAT
1 GAAAGGAATGCCTTTGTGGCGCAATAT
*
76359727 GAAAGGAATGCCTTTGTGGCACAATAT
1 GAAAGGAATGCCTTTGTGGCGCAATAT
**
76359754 GAAAGGAACACCTTTGTGGCGCAATAT
1 GAAAGGAATGCCTTTGTGGCGCAATAT
*
76359781 GAAAAGAATGCCTTTGTGGCGCAATAT
1 GAAAGGAATGCCTTTGTGGCGCAATAT
76359808 GAAAGGAA
1 GAAAGGAA
76359816 CACCTGTCAA
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.24
Consensus pattern (27 bp):
GAAAGGAATGCCTTTGTGGCGCAATAT
Found at i:76360662 original size:18 final size:17
Alignment explanation
Indices: 76360637--76360684 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
76360627 AAAAATAAAA
76360637 AAAATGATAATAACAAC
1 AAAATGATAATAACAAC
* *
76360654 AATAATGATAATGATAAC
1 AA-AATGATAATAACAAC
*
76360672 AAAATAATAATAA
1 AAAATGATAATAA
76360685 TAAAATCTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.23
Consensus pattern (17 bp):
AAAATGATAATAACAAC
Found at i:76360679 original size:20 final size:21
Alignment explanation
Indices: 76360646--76360685 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
76360636 AAAAATGATA
*
76360646 ATAACAACAATAATGATAATG
1 ATAACAACAATAATAATAATG
76360667 ATAACAA-AATAATAATAAT
1 ATAACAACAATAATAATAAT
76360686 AAAATCTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (21 bp):
ATAACAACAATAATAATAATG
Found at i:76360976 original size:46 final size:47
Alignment explanation
Indices: 76360920--76361015 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
76360910 TTAAATAGAT
*
76360920 TAAGGATTGAATTGAAATT-AAAGGGAGTTTTGGGCTTAAATTATAA
1 TAAGGATTGAATTGAAATTAAAAGGGAGCTTTGGGCTTAAATTATAA
76360966 TAAGGATTGAATTGAAATTAAAAGGGAGCTTTGGGCTTAAATTATAA
1 TAAGGATTGAATTGAAATTAAAAGGGAGCTTTGGGCTTAAATTATAA
76361013 TAA
1 TAA
76361016 AATAAATGTA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 19 0.40
47 29 0.60
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (47 bp):
TAAGGATTGAATTGAAATTAAAAGGGAGCTTTGGGCTTAAATTATAA
Found at i:76370192 original size:86 final size:88
Alignment explanation
Indices: 76369726--76370206 Score: 361
Period size: 89 Copynumber: 5.4 Consensus size: 88
76369716 TCATTCCAAC
* * * * * *
76369726 CCACTGCAACTTCAGGG-GTATAAGAATTGTCGCTTCAA-TATGCTTCATTGCAACTTTAGGGAG
1 CCACTGCAACTTCAGGGAG-ATAAGATTTATAGCTTCAACT-TGCTCCACTGCAACTTCAGGGAG
* *
76369789 ATAA-GATTAGTAGCTTCAATCTGCT
64 ATAAGGTTTA-TAGCTTTAATCTGCT
* * * * * *
76369814 CCACTGTAACTCCAGGGAAATAAGATTCGCATA--TTCAATTTGCTCCATTGCAACTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGATT--TATAGCTTCAACTTGCTCCACTGCAACTTCAGGGAG
* * ***
76369877 ATAAGATTTGTAACTTGTAGCATTAATCCATT
64 ATAAG----GT---TTATAGCTTTAATCTGCT
* * * * * *
76369909 CCACTGCAACTTCAGGGAAATAAGATTCACATCTTC-ACTCTGCTCCACTACAACTTTAGGGAGA
1 CCACTGCAACTTCAGGGAGATAAGATTTATAGCTTCAACT-TGCTCCACTGCAACTTCAGGGAGA
* * * *
76369973 CAAGGTTTGCTATCTTCAATCTGCT
65 TAAGGTTT-ATAGCTTTAATCTGCT
* * *
76369998 CCACTGCAACTTCAGGGAGATAAGACTTATAGCTTCAACTTTCTTCACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTCAGGGAGATAAGATTTATAGCTTCAACTTGCTCCACTGCAACTTCAGGGAGAT
*
76370063 AAGGTTTATAGCTTTAATATGCT
66 AAGGTTTATAGCTTTAATCTGCT
* * * * * * *
76370086 CTATTGCAAATTCAGAGAGATAAAATTTGTTATCTTCAA-TATGCTCCACTGCAACTTCA-GG-G
1 CCACTGCAACTTCAGGGAGATAAGATTT-ATAGCTTCAACT-TGCTCCACTGCAACTTCAGGGAG
*
76370148 -TAAGGTTTATAGCTTTAATCTACT
64 ATAAGGTTTATAGCTTTAATCTGCT
* *
76370172 CCACTGTAACTTTAGGGAGATAAGATTTATAGCTT
1 CCACTGCAACTTCAGGGAGATAAGATTTATAGCTT
76370207 TAATCTGCTT
Statistics
Matches: 308, Mismatches: 66, Indels: 41
0.74 0.16 0.10
Matches are distributed among these distances:
85 5 0.02
86 43 0.14
87 1 0.00
88 91 0.30
89 92 0.30
90 4 0.01
91 2 0.01
93 4 0.01
94 2 0.01
95 62 0.20
96 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (88 bp):
CCACTGCAACTTCAGGGAGATAAGATTTATAGCTTCAACTTGCTCCACTGCAACTTCAGGGAGAT
AAGGTTTATAGCTTTAATCTGCT
Found at i:76370202 original size:130 final size:133
Alignment explanation
Indices: 76369726--76370215 Score: 348
Period size: 133 Copynumber: 3.7 Consensus size: 133
76369716 TCATTCCAAC
* * * * * * *
76369726 CCACTGCAACTTCAGGG-GTATAAGAATTGTCGCTTCAA-TATGCTTCATTGCAACTTTAGGGAG
1 CCACTGCAACTTCAGGGAG-ATAAGACTTATAGCTTCAACT-TACTCCACTGCAACTTCAGGGAG
* * * * * * * * * * * *
76369789 ATAAGA-TTAGTAGCTTCAATCTGCTCCACTGTAACTCCAGGGAAATAAGATTCGC-ATATTCAA
64 ATAAGATTTA-TAGCTTTAATATGCTCTATTGCAAATTCAGAGAGATAAAATTTGCTATCTTCAA
*
76369852 TTTGCT
128 TATGCT
* * * * * *
76369858 CCATTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCATTAATCCATTCCACTGCAACTTCA
1 CCACTGCAACTTCAGGGAGATAAGACTTATAGCTT-CAAC-TT-A--C--TCCACTGCAACTTCA
* * * * * * * * * * * * * * **
76369923 GGGAAATAAGATTCACATCTTCACTCTGCTCCACTACAACTTTAGGGAGACAAGGTTTGCTATCT
59 GGGAGATAAGATTTATAGCTTTAATATGCTCTATTGCAAATTCAGAGAGATAAAATTTGCTATCT
*
76369988 TCAATCTGCT
124 TCAATATGCT
* *
76369998 CCACTGCAACTTCAGGGAGATAAGACTTATAGCTTCAACTTTCTTCACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTCAGGGAGATAAGACTTATAGCTTCAACTTACTCCACTGCAACTTCAGGGAGAT
* *
76370063 AAGGTTTATAGCTTTAATATGCTCTATTGCAAATTCAGAGAGATAAAATTTGTTATCTTCAATAT
66 AAGATTTATAGCTTTAATATGCTCTATTGCAAATTCAGAGAGATAAAATTTGCTATCTTCAATAT
76370128 GCT
131 GCT
** * * *
76370131 CCACTGCAACTTCA-GG-G-TAAGGTTTATAGCTTTAA-TCTACTCCACTGTAACTTTAGGGAGA
1 CCACTGCAACTTCAGGGAGATAAGACTTATAGCTTCAACT-TACTCCACTGCAACTTCAGGGAGA
*
76370192 TAAGATTTATAGCTTTAATCTGCT
65 TAAGATTTATAGCTTTAATATGCT
76370216 TTACTACAAC
Statistics
Matches: 285, Mismatches: 61, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
129 1 0.00
130 57 0.20
131 1 0.00
132 31 0.11
133 86 0.30
134 1 0.00
135 2 0.01
137 1 0.00
138 2 0.01
139 58 0.20
140 45 0.16
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (133 bp):
CCACTGCAACTTCAGGGAGATAAGACTTATAGCTTCAACTTACTCCACTGCAACTTCAGGGAGAT
AAGATTTATAGCTTTAATATGCTCTATTGCAAATTCAGAGAGATAAAATTTGCTATCTTCAATAT
GCT
Found at i:76370209 original size:44 final size:44
Alignment explanation
Indices: 76369726--76370287 Score: 372
Period size: 44 Copynumber: 12.6 Consensus size: 44
76369716 TCATTCCAAC
* * * *
76369726 CCACTGCAACTTCAGGG-GTATAAGAATTGTCGCTTCAATATGCT
1 CCACTGCAACTTCAGGGAG-ATAAGATTTATAGCTTCAATCTGCT
* * *
76369770 TCATTGCAACTTTAGGGAGATAAGA-TTAGTAGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTA-TAGCTTCAATCTGCT
* * * * *
76369814 CCACTGTAACTCCAGGGAAATAAGATTCGCATA--TTCAATTTGCT
1 CCACTGCAACTTCAGGGAGATAAGATT--TATAGCTTCAATCTGCT
* ***
76369858 CCATTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCATT-AATCCATT
1 CCACTGCAACTTCAGGGAGATAAGA-TT-T-A----TAGC-TTCAATCTGCT
* * * * *
76369909 CCACTGCAACTTCAGGGAAATAAGATTCACATCTTCACTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTATAGCTTCAATCTGCT
* * * * * *
76369953 CCACTACAACTTTAGGGAGACAAGGTTTGCTATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTT-ATAGCTTCAATCTGCT
* *
76369998 CCACTGCAACTTCAGGGAGATAAGACTTATAGCTTCAA-CTTTCT
1 CCACTGCAACTTCAGGGAGATAAGATTTATAGCTTCAATC-TGCT
* * * *
76370042 TCACTGCAACTTCAGGGAGATAAGGTTTATAGCTTTAATATGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTATAGCTTCAATCTGCT
* * * * * * * *
76370086 CTATTGCAAATTCAGAGAGATAAAATTTGTTATCTTCAATATGCT
1 CCACTGCAACTTCAGGGAGATAAGATTT-ATAGCTTCAATCTGCT
* * *
76370131 CCACTGCAACTTCA-GG-G-TAAGGTTTATAGCTTTAATCTACT
1 CCACTGCAACTTCAGGGAGATAAGATTTATAGCTTCAATCTGCT
* * *
76370172 CCACTGTAACTTTAGGGAGATAAGATTTATAGCTTTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTATAGCTTCAATCTGCT
** * * * * *
76370216 TTACTACAACTTTAAGGAGATAAGA-TTACT-GACTTCAACCTTCT
1 CCACTGCAACTTCAGGGAGATAAGATTTA-TAG-CTTCAATCTGCT
* * * *
76370260 CCACCGTAACTTTAGAGAGATAAGATTT
1 CCACTGCAACTTCAGGGAGATAAGATTT
76370288 GCCATAGTGA
Statistics
Matches: 398, Mismatches: 95, Indels: 49
0.73 0.18 0.09
Matches are distributed among these distances:
41 23 0.06
42 8 0.02
43 11 0.03
44 252 0.63
45 67 0.17
46 2 0.01
47 1 0.00
48 1 0.00
49 2 0.01
50 2 0.01
51 27 0.07
52 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATTTATAGCTTCAATCTGCT
Found at i:76377702 original size:9 final size:9
Alignment explanation
Indices: 76377688--76377720 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
76377678 GAATTATTCA
76377688 AATCGAGTT
1 AATCGAGTT
*
76377697 AATCGAATT
1 AATCGAGTT
76377706 AATCGAGTT
1 AATCGAGTT
76377715 AATCGA
1 AATCGA
76377721 ATCAACTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (9 bp):
AATCGAGTT
Found at i:76377711 original size:18 final size:18
Alignment explanation
Indices: 76377688--76377722 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
76377678 GAATTATTCA
76377688 AATCGAGTTAATCGAATT
1 AATCGAGTTAATCGAATT
76377706 AATCGAGTTAATCGAAT
1 AATCGAGTTAATCGAAT
76377723 CAACTCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.31
Consensus pattern (18 bp):
AATCGAGTTAATCGAATT
Found at i:76378115 original size:12 final size:12
Alignment explanation
Indices: 76378098--76378134 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
76378088 TAATTATTTT
76378098 TCACTTATTTAC
1 TCACTTATTTAC
*
76378110 TCACTTATTTAT
1 TCACTTATTTAC
76378122 TCACTTATTTAC
1 TCACTTATTTAC
76378134 T
1 T
76378135 TCAATTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.00, T:0.54
Consensus pattern (12 bp):
TCACTTATTTAC
Found at i:76382096 original size:19 final size:20
Alignment explanation
Indices: 76382074--76382118 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
76382064 TTATGAAACT
*
76382074 TAATGCATATG-ATGAAATG
1 TAATGCAGATGAATGAAATG
*
76382093 TAATGGAGATGAATGAAATG
1 TAATGCAGATGAATGAAATG
76382113 -AATGCA
1 TAATGCA
76382119 AAAAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.44, C:0.04, G:0.24, T:0.27
Consensus pattern (20 bp):
TAATGCAGATGAATGAAATG
Found at i:76385778 original size:3 final size:3
Alignment explanation
Indices: 76385772--76385827 Score: 51
Period size: 3 Copynumber: 18.7 Consensus size: 3
76385762 AAAAATAAAA
* * * * *
76385772 AAT AAT AAT TAC AAC AAT AAT AAT AAT GAT AAC AA- AAT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
76385817 AAT AAT AAT AA
1 AAT AAT AAT AA
76385828 AATCTAAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
2 2 0.05
3 39 0.89
4 3 0.07
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:76385798 original size:21 final size:21
Alignment explanation
Indices: 76385757--76385830 Score: 87
Period size: 21 Copynumber: 3.5 Consensus size: 21
76385747 AATAAGCGTA
* *
76385757 AATAAAAAAATAAAAAATAAT
1 AATAACAAAATAATAAATAAT
*
76385778 AATTACAACAATAAT-AATAAT
1 AATAACAA-AATAATAAATAAT
*
76385799 GATAACAAAATAATAAATAAT
1 AATAACAAAATAATAAATAAT
*
76385820 AATAATAAAAT
1 AATAACAAAAT
76385831 CTAAATTTTG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 6 0.14
21 33 0.75
22 5 0.11
ACGTcount: A:0.70, C:0.04, G:0.01, T:0.24
Consensus pattern (21 bp):
AATAACAAAATAATAAATAAT
Found at i:76389219 original size:43 final size:47
Alignment explanation
Indices: 76389172--76389290 Score: 124
Period size: 48 Copynumber: 2.6 Consensus size: 47
76389162 ATTTCGTATT
*
76389172 AGACCAAAG-CTGGG-C-T-ATTGGCATCGATCTACAATCCCAAGTA
1 AGACCAAAGACTGGGACATGATTGGCAACGATCTACAATCCCAAGTA
* *
76389215 AGACC-ATGACTGGGACATGGCATTGGCAACGATCTACAATCCCACGTA
1 AGACCAAAGACTGGGACAT-G-ATTGGCAACGATCTACAATCCCAAGTA
*
76389263 AGACC-ATGACTGGGACATGGCATTGGCA
1 AGACCAAAGACTGGGACAT-G-ATTGGCA
76389291 TTGATATGTG
Statistics
Matches: 67, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
42 2 0.03
43 10 0.15
44 1 0.01
45 1 0.01
48 53 0.79
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.19
Consensus pattern (47 bp):
AGACCAAAGACTGGGACATGATTGGCAACGATCTACAATCCCAAGTA
Found at i:76389248 original size:48 final size:48
Alignment explanation
Indices: 76389188--76389290 Score: 188
Period size: 48 Copynumber: 2.1 Consensus size: 48
76389178 AAGCTGGGCT
*
76389188 ATTGGCATCGATCTACAATCCCAAGTAAGACCATGACTGGGACATGGC
1 ATTGGCAACGATCTACAATCCCAAGTAAGACCATGACTGGGACATGGC
*
76389236 ATTGGCAACGATCTACAATCCCACGTAAGACCATGACTGGGACATGGC
1 ATTGGCAACGATCTACAATCCCAAGTAAGACCATGACTGGGACATGGC
76389284 ATTGGCA
1 ATTGGCA
76389291 TTGATATGTG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.20
Consensus pattern (48 bp):
ATTGGCAACGATCTACAATCCCAAGTAAGACCATGACTGGGACATGGC
Found at i:76389305 original size:48 final size:48
Alignment explanation
Indices: 76389188--76389340 Score: 182
Period size: 48 Copynumber: 3.2 Consensus size: 48
76389178 AAGCTGGGCT
*
76389188 ATTGGCATCGATCTACAATCCCAAGTAAGACCATGACTGGGACATGGC
1 ATTGGCATCGATATACAATCCCAAGTAAGACCATGACTGGGACATGGC
* * *
76389236 ATTGGCAACGATCTACAATCCCACGTAAGACCATGACTGGGACATGGC
1 ATTGGCATCGATATACAATCCCAAGTAAGACCATGACTGGGACATGGC
* *** * ** *
76389284 ATTGGCATTGATATGTGATCCCATGTAAGACCAT-ATCCAGGATATGGC
1 ATTGGCATCGATATACAATCCCAAGTAAGACCATGA-CTGGGACATGGC
76389332 ATTGGCATC
1 ATTGGCATC
76389341 CTACCATGTG
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
47 1 0.01
48 90 0.99
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.24
Consensus pattern (48 bp):
ATTGGCATCGATATACAATCCCAAGTAAGACCATGACTGGGACATGGC
Found at i:76394160 original size:40 final size:40
Alignment explanation
Indices: 76394062--76394253 Score: 235
Period size: 40 Copynumber: 4.8 Consensus size: 40
76394052 TCGAATGGTG
* * * * *
76394062 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACAAAA
* *
76394103 TCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CAAAA
76394144 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CAAAA
* *
76394184 -CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACAAAA
* * *
76394223 TCCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
76394254 ATCACTATAA
Statistics
Matches: 133, Mismatches: 15, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
39 4 0.03
40 99 0.74
41 30 0.23
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACAAAA
Found at i:76394212 original size:80 final size:80
Alignment explanation
Indices: 76394062--76394295 Score: 256
Period size: 80 Copynumber: 2.9 Consensus size: 80
76394052 TCGAATGGTG
* * * * *
76394062 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATT
*
76394127 TGTGCGAGTTACCAAAA
65 CGTGCGAGTTA-CAAAA
* * *
76394144 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
*
76394208 GTGCGAGTTACTAAA
66 GTGCGAGTTACAAAA
* * * * * * * *
76394223 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAGACAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAA-GTCCCGAAGGCATT
*
76394287 CGAGCGAGT
65 CGTGCGAGT
76394296 CGCTATATCC
Statistics
Matches: 129, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
79 7 0.05
80 96 0.74
81 25 0.19
82 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
GTGCGAGTTACAAAA
Found at i:76394268 original size:40 final size:39
Alignment explanation
Indices: 76394063--76394295 Score: 202
Period size: 40 Copynumber: 5.8 Consensus size: 39
76394053 CGAATGGTGT
** * *
76394063 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTAAA
* * *
76394103 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
* * * *
76394144 TCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CTAAA
*
76394184 CCGGGTTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTAAA
* * *
76394223 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTA-AA
* * *
76394264 CCGGGC-AATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAA-GTCCCGAAGGCAATTGTGCGAGT
76394296 CGCTATATCC
Statistics
Matches: 165, Mismatches: 19, Indels: 17
0.82 0.09 0.08
Matches are distributed among these distances:
39 8 0.05
40 123 0.75
41 34 0.21
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAA
Found at i:76394277 original size:120 final size:121
Alignment explanation
Indices: 76394063--76394281 Score: 291
Period size: 120 Copynumber: 1.8 Consensus size: 121
76394053 CGAATGGTGT
* * *
76394063 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * * *
76394128 GTGCGAGTTACCAAAATCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
76394184 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
76394247 TGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAAG
76394282 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 3 0.04
120 56 0.67
121 25 0.30
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:76402271 original size:38 final size:40
Alignment explanation
Indices: 76402152--76402338 Score: 211
Period size: 39 Copynumber: 4.8 Consensus size: 40
76402142 CGAATGGTGT
* * * * * *
76402152 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
76402193 CC-GGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
76402232 CCGGGTTAAGT-CCGAAGGCATTTGTG-GAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
76402270 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
76402310 CC-GGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
76402339 ATCACTATAA
Statistics
Matches: 126, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
38 23 0.18
39 62 0.49
40 39 0.31
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:76404073 original size:15 final size:16
Alignment explanation
Indices: 76404053--76404082 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76404043 TGCACATGTA
76404053 TGAATG-AATTTGATT
1 TGAATGAAATTTGATT
76404068 TGAATGAAATTTGAT
1 TGAATGAAATTTGAT
76404083 GGCCAGGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (16 bp):
TGAATGAAATTTGATT
Found at i:76404989 original size:16 final size:17
Alignment explanation
Indices: 76404968--76405002 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
76404958 CTCTTTTGTA
76404968 TTTGGG-TTTATAATTT
1 TTTGGGATTTATAATTT
*
76404984 TTTGGGATTTGTAATTT
1 TTTGGGATTTATAATTT
76405001 TT
1 TT
76405003 GGACTGGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.17, C:0.00, G:0.20, T:0.63
Consensus pattern (17 bp):
TTTGGGATTTATAATTT
Found at i:76416146 original size:40 final size:40
Alignment explanation
Indices: 76416091--76416173 Score: 130
Period size: 40 Copynumber: 2.1 Consensus size: 40
76416081 TGTTATACTC
76416091 TCTGTTTGATGTGTTTCGGATAGATCAGCTCTTATGAGCT
1 TCTGTTTGATGTGTTTCGGATAGATCAGCTCTTATGAGCT
* ** *
76416131 TCTGTTTGGTGTGTTTCGTTTGGATCAGCTCTTATGAGCT
1 TCTGTTTGATGTGTTTCGGATAGATCAGCTCTTATGAGCT
76416171 TCT
1 TCT
76416174 TTATTGTAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.13, C:0.16, G:0.25, T:0.46
Consensus pattern (40 bp):
TCTGTTTGATGTGTTTCGGATAGATCAGCTCTTATGAGCT
Found at i:76420020 original size:40 final size:40
Alignment explanation
Indices: 76419954--76420117 Score: 226
Period size: 40 Copynumber: 4.1 Consensus size: 40
76419944 GACTAAGATT
* * * *
76419954 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACC
* *
76419994 CGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACC
*
76420034 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACC
76420074 CGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAA-ATCC
1 CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGA-CC
76420113 CGAAG
1 CGAAG
76420118 ATGCTTGGGT
Statistics
Matches: 111, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.14
40 93 0.84
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACC
Found at i:76421919 original size:13 final size:13
Alignment explanation
Indices: 76421897--76421929 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76421887 AAGGGTTTGT
76421897 TTAT-TAAACTAA
1 TTATCTAAACTAA
76421909 TTATCTAAACTAA
1 TTATCTAAACTAA
*
76421922 TTAACTAA
1 TTATCTAA
76421930 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:76424874 original size:5 final size:5
Alignment explanation
Indices: 76424845--76424912 Score: 64
Period size: 6 Copynumber: 12.2 Consensus size: 5
76424835 AAAATAAAAG
*
76424845 AATAA AATTGA AATGAA AATCAA AATAA AATTAAA AATAA AATAA AATAA
1 AATAA AA-TAA AAT-AA AAT-AA AATAA AA-T-AA AATAA AATAA AATAA
76424895 AATAAA AATAAA AATAA A
1 AAT-AA AAT-AA AATAA A
76424913 TAGGAGGAGT
Statistics
Matches: 55, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
5 25 0.45
6 26 0.47
7 4 0.07
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:76424880 original size:17 final size:16
Alignment explanation
Indices: 76424845--76424912 Score: 66
Period size: 17 Copynumber: 4.1 Consensus size: 16
76424835 AAAATAAAAG
* *
76424845 AATAAAATTGAAATGAA
1 AATAAAA-TAAAATTAA
76424862 AATCAAAATAAAATTAAA
1 AAT-AAAATAAAATT-AA
76424880 AATAAAATAAAA-TAA
1 AATAAAATAAAATTAA
*
76424895 AATAAAAATAAAAATAA
1 AAT-AAAATAAAATTAA
76424912 A
1 A
76424913 TAGGAGGAGT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
15 5 0.11
16 10 0.22
17 21 0.47
18 9 0.20
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.21
Consensus pattern (16 bp):
AATAAAATAAAATTAA
Found at i:76426797 original size:13 final size:13
Alignment explanation
Indices: 76426776--76426811 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
76426766 TGGGCATGTG
76426776 TGGCACACGGCCA
1 TGGCACACGGCCA
*
76426789 TGGCGCACGGCCA
1 TGGCACACGGCCA
76426802 TGGCACACGG
1 TGGCACACGG
76426812 TCGTGCCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.19, C:0.36, G:0.36, T:0.08
Consensus pattern (13 bp):
TGGCACACGGCCA
Found at i:76428778 original size:27 final size:27
Alignment explanation
Indices: 76428741--76428796 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
76428731 GCATTACAAG
76428741 TATTATTGTATGGGTTATTTTGAGATT
1 TATTATTGTATGGGTTATTTTGAGATT
76428768 TATTATTGTATGGGTTATTTTGAGATT
1 TATTATTGTATGGGTTATTTTGAGATT
76428795 TA
1 TA
76428797 AAGTTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.23, C:0.00, G:0.21, T:0.55
Consensus pattern (27 bp):
TATTATTGTATGGGTTATTTTGAGATT
Found at i:76428785 original size:15 final size:15
Alignment explanation
Indices: 76428741--76428786 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
76428731 GCATTACAAG
76428741 TATTATTGTATGGGT
1 TATTATTGTATGGGT
**
76428756 TATT-TTG-A-GATT
1 TATTATTGTATGGGT
76428768 TATTATTGTATGGGT
1 TATTATTGTATGGGT
76428783 TATT
1 TATT
76428787 TTGAGATTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
12 6 0.25
13 4 0.17
14 4 0.17
15 10 0.42
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.57
Consensus pattern (15 bp):
TATTATTGTATGGGT
Found at i:76430232 original size:13 final size:13
Alignment explanation
Indices: 76430210--76430242 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76430200 AAGGGTTTGT
76430210 TTAT-TAAACTAA
1 TTATCTAAACTAA
76430222 TTATCTAAACTAA
1 TTATCTAAACTAA
*
76430235 TTAACTAA
1 TTATCTAA
76430243 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:76432299 original size:40 final size:40
Alignment explanation
Indices: 76432213--76432299 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
76432203 GTTATATGTA
* * *
76432213 TGGTGTGTTTTAGTTGGATTAGCTCTTATGAGCTTCTGTC
1 TGGTGTGTTTGAGTTGGACTAACTCTTATGAGCTTCTGTC
* *
76432253 TAGTGTGTTTCGA-TTGGACTAACTCTTATGAGCTTCTGTT
1 TGGTGTGTTT-GAGTTGGACTAACTCTTATGAGCTTCTGTC
76432293 TGGTGTG
1 TGGTGTG
76432300 CCCGATTGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
40 39 0.98
41 1 0.03
ACGTcount: A:0.14, C:0.13, G:0.28, T:0.46
Consensus pattern (40 bp):
TGGTGTGTTTGAGTTGGACTAACTCTTATGAGCTTCTGTC
Found at i:76439135 original size:40 final size:39
Alignment explanation
Indices: 76439077--76439269 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
76439067 CGTTCAAACA
* * ** * *
76439077 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
76439117 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
76439157 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
76439196 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
76439235 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
76439270 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:76439188 original size:39 final size:39
Alignment explanation
Indices: 76439107--76439269 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
76439097 TATGGTAACC
* *
76439107 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
76439147 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
76439186 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
76439225 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
76439264 CGCACA
1 CGCACA
76439270 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:76446231 original size:16 final size:16
Alignment explanation
Indices: 76446210--76446242 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
76446200 TTCGATCACA
76446210 TAATTTATTCACTATT
1 TAATTTATTCACTATT
76446226 TAATTTATTCACTATT
1 TAATTTATTCACTATT
76446242 T
1 T
76446243 TCCTACAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58
Consensus pattern (16 bp):
TAATTTATTCACTATT
Found at i:76447091 original size:40 final size:39
Alignment explanation
Indices: 76447047--76447239 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
76447037 GTTCAAAACA
* * ** * *
76447047 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
76447087 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
76447127 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
76447166 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
76447205 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
76447240 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:76447158 original size:39 final size:39
Alignment explanation
Indices: 76447077--76447239 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
76447067 TATGGTAACC
* *
76447077 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
76447117 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
76447156 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
76447195 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
76447234 CGCACA
1 CGCACA
76447240 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:76454708 original size:24 final size:24
Alignment explanation
Indices: 76454598--76454712 Score: 88
Period size: 24 Copynumber: 4.8 Consensus size: 24
76454588 CATAAACAGA
* *
76454598 AAGCTCTTGTGAGCCATATAACGGG
1 AAGCTCTAGAGAGCCA-ATAACGGG
** *
76454623 AAGCTCCGGAGAGCCATTAACGGG
1 AAGCTCTAGAGAGCCAATAACGGG
* **
76454647 AAGCTCATACA-AGCCAATTTCGGG
1 AAGCTC-TAGAGAGCCAATAACGGG
* * * *
76454671 AAGTTCAAGTGAGCCAATATCGGG
1 AAGCTCTAGAGAGCCAATAACGGG
*
76454695 AAGCTCTGGAGAGCCAAT
1 AAGCTCTAGAGAGCCAAT
76454713 TAATAGGGAA
Statistics
Matches: 69, Mismatches: 19, Indels: 5
0.74 0.20 0.05
Matches are distributed among these distances:
23 1 0.01
24 54 0.78
25 14 0.20
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (24 bp):
AAGCTCTAGAGAGCCAATAACGGG
Found at i:76458393 original size:46 final size:46
Alignment explanation
Indices: 76458249--76458562 Score: 203
Period size: 46 Copynumber: 6.6 Consensus size: 46
76458239 TGTGAGCTAG
* * * *
76458249 TGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTAGGAGAGTCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGAGCCAA
* * * * *
76458295 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGAGCCAA
* *
76458343 TGTAAGACATGTCTAGGACATGCATCGGCCTCGGGACGTA-AGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AGAGCCAA
* * *
76458389 TGTAAGACATGTCTGGGACATGCATCGG-CTAC-A-A-GATGTGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGA-GAGCCAA
* * * * *
76458433 TGTAAGACCATGTCTGGGACATGGTATCGG-CACG-GTTATGTGAGAGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAG--A--CGAGAGCCAA
* * * * *
76458483 TGTAAGACCATGTTTAGGACATGGCATCGGCCTCGAAGATGATAGCCAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG-AGACGAGAGCCAA
76458532 TGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC
76458563 ACCTTACCCA
Statistics
Matches: 215, Mismatches: 34, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 11 0.05
45 17 0.08
46 59 0.27
47 28 0.13
48 22 0.10
49 38 0.18
50 31 0.14
51 6 0.03
53 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGAGCCAA
Found at i:76458487 original size:94 final size:93
Alignment explanation
Indices: 76458247--76458562 Score: 303
Period size: 94 Copynumber: 3.3 Consensus size: 93
76458237 TGTGTGAGCT
*
76458247 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTAG-GAGAG-TCAATGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGGTTAGTGAGAGCT-AATGTAAGACCATGTC
* *
76458309 TGGGACATGGCATCGGCATTGAGACGA-GTGC
65 TGGGACATGGCATCGGC--T-ACAAGATGTGC
* * * *
76458340 TAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGG-GACGT-A-AGCCAATGTAAGA-CATGT
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCACGGTTA-GTGAGAGCTAATGTAAGACCATGT
76458401 CTGGGACAT-GCATCGGCTACAAGATGTGTC
64 CTGGGACATGGCATCGGCTACAAGATGTG-C
* *
76458431 AGTGTAAGACCATGTCTGGGACATGGTATCGG-CACGGTTATGTGAGAGCTAGTGTAAGACCATG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGGTTA-GTGAGAGCTAATGTAAGACCATG
* *
76458495 TTTAGGACATGGCATCGGCCT-CGAAGATGATAGCC
63 TCTGGGACATGGCATCGG-CTAC-AAGATG-T-G-C
76458530 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
76458563 ACCTTACCCA
Statistics
Matches: 186, Mismatches: 18, Indels: 30
0.79 0.08 0.13
Matches are distributed among these distances:
89 4 0.02
90 13 0.07
91 18 0.10
92 17 0.09
93 15 0.08
94 55 0.30
95 14 0.08
96 8 0.04
97 8 0.04
98 1 0.01
99 33 0.18
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGGTTAGTGAGAGCTAATGTAAGACCATGTCT
GGGACATGGCATCGGCTACAAGATGTGC
Found at i:76465695 original size:23 final size:22
Alignment explanation
Indices: 76465663--76465705 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
76465653 TGTTCTTGCC
76465663 AAAATGTCA-TCTAGATGGCAAA
1 AAAATGTCATTCTA-ATGGCAAA
76465685 AAAATAGTCATTCTAATGGCA
1 AAAAT-GTCATTCTAATGGCA
76465706 TCAAGGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 10 0.53
24 4 0.21
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.26
Consensus pattern (22 bp):
AAAATGTCATTCTAATGGCAAA
Found at i:76469797 original size:20 final size:21
Alignment explanation
Indices: 76469758--76469797 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
76469748 GACCAATTAT
* *
76469758 AAAAAAAAATAGTTAGATAAC
1 AAAAAAAAAGAGTTACATAAC
76469779 AAAAAAAAAGAGTT-CATAA
1 AAAAAAAAAGAGTTACATAA
76469798 TTGTTTGAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.68, C:0.05, G:0.10, T:0.17
Consensus pattern (21 bp):
AAAAAAAAAGAGTTACATAAC
Found at i:76474062 original size:15 final size:16
Alignment explanation
Indices: 76474044--76474076 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
76474034 TATATTTTTT
76474044 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
76474059 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
76474076 T
1 T
76474077 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:76474161 original size:22 final size:22
Alignment explanation
Indices: 76474122--76474180 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
76474112 GTTTTAAGAA
*
76474122 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
76474143 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
76474165 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
76474181 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:76474197 original size:26 final size:24
Alignment explanation
Indices: 76474151--76474210 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
76474141 ATTTGTTTTA
*
76474151 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
76474175 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
76474201 TTTTTTATTT
1 ATATTTATTT
76474211 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:76478927 original size:21 final size:20
Alignment explanation
Indices: 76478883--76478941 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
76478873 TCAGCTTCCA
**
76478883 TTAGCTCACTTGAGCTTGAT
1 TTAGCTCACTTGAGCTAAAT
*
76478903 TTAGCTCGCTTGAGCTCAAAT
1 TTAGCTCACTTGAGCT-AAAT
* *
76478924 TTAGCTCATTTCAGCTAA
1 TTAGCTCACTTGAGCTAA
76478942 TTTCTTCTTC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 17 0.53
21 15 0.47
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (20 bp):
TTAGCTCACTTGAGCTAAAT
Found at i:76479171 original size:13 final size:13
Alignment explanation
Indices: 76479153--76479187 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
76479143 ATTATATGAA
*
76479153 TAATTATTTTATT
1 TAATTATGTTATT
76479166 TAATTATGTTATT
1 TAATTATGTTATT
76479179 TAATTATGT
1 TAATTATGT
76479188 AGGTTAGCCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (13 bp):
TAATTATGTTATT
Found at i:76481666 original size:19 final size:19
Alignment explanation
Indices: 76481620--76481658 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
76481610 GAATTTAGCT
*
76481620 GACAAAGAGAGAGGACTAA
1 GACAAGGAGAGAGGACTAA
76481639 GACAAGGAGAGAGGACTAA
1 GACAAGGAGAGAGGACTAA
76481658 G
1 G
76481659 TAAGGGAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.10, G:0.36, T:0.05
Consensus pattern (19 bp):
GACAAGGAGAGAGGACTAA
Found at i:76483250 original size:12 final size:13
Alignment explanation
Indices: 76483229--76483257 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
76483219 AAACCAGTCA
76483229 TTTTATTTTTTAT
1 TTTTATTTTTTAT
76483242 TTTTA-TTTTTAT
1 TTTTATTTTTTAT
76483254 TTTT
1 TTTT
76483258 TCTACTATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:76484193 original size:21 final size:22
Alignment explanation
Indices: 76484149--76484191 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
76484139 TTTTAAATTA
*
76484149 AAAAAATATAAAAATTATTTTT
1 AAAAAATATAAAAAGTATTTTT
*
76484171 AAAAATTATAAAAAGTATTTT
1 AAAAAATATAAAAAGTATTTT
76484192 AATATTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
AAAAAATATAAAAAGTATTTTT
Found at i:76486369 original size:14 final size:15
Alignment explanation
Indices: 76486338--76486369 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
76486328 TTGTGGTTTT
76486338 AAAAATGTTTTTAGA
1 AAAAATGTTTTTAGA
76486353 AAAAATGTTTTTA-A
1 AAAAATGTTTTTAGA
76486367 AAA
1 AAA
76486370 GTGTGATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (15 bp):
AAAAATGTTTTTAGA
Found at i:76486998 original size:115 final size:115
Alignment explanation
Indices: 76486782--76487010 Score: 397
Period size: 115 Copynumber: 2.0 Consensus size: 115
76486772 CATCCAAATA
76486782 ATACCAACAAAATAATAGCAATGTAGTAGCAAAACAATAGTAAACAGCAACAAAAAAAATTATGC
1 ATACCAACAAAATAATAGCAATGTAGTAGCAAAACAATAGTAAACAGCAACAAAAAAAATTATGC
* * * *
76486847 AGTTTAAGTCGGGCTTGGGCCAAGCCTGAGTCAAAAAATTCTTATCCGAG
66 AGTTTAAGTCGAGCTTGGGCCAAACCTGAGCCAAAAAATCCTTATCCGAG
*
76486897 ATACCAACAAAATAATAGCAATGTAGTAGCAAAACAATAGTAAACAGCAATAAAAAAAATTATGC
1 ATACCAACAAAATAATAGCAATGTAGTAGCAAAACAATAGTAAACAGCAACAAAAAAAATTATGC
*
76486962 AGTTTAAGTCGAG-TTGGGCCAAACCTGGGCCAAAAAATCCTTATCCGAG
66 AGTTTAAGTCGAGCTTGGGCCAAACCTGAGCCAAAAAATCCTTATCCGAG
76487011 TCTTGGCGCA
Statistics
Matches: 108, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
114 32 0.30
115 76 0.70
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.21
Consensus pattern (115 bp):
ATACCAACAAAATAATAGCAATGTAGTAGCAAAACAATAGTAAACAGCAACAAAAAAAATTATGC
AGTTTAAGTCGAGCTTGGGCCAAACCTGAGCCAAAAAATCCTTATCCGAG
Found at i:76494865 original size:35 final size:35
Alignment explanation
Indices: 76494825--76494895 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
76494815 TCTAGGATCA
* *
76494825 CATATCTTTGAAGATCCCCTTCCATATTTGCCAAG
1 CATATCTTTGAAGATCACCTTCCATATCTGCCAAG
* *
76494860 CATATCTTTGAAGATCACTTTCCATATCTGTCAAG
1 CATATCTTTGAAGATCACCTTCCATATCTGCCAAG
76494895 C
1 C
76494896 TCTAGAGATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (35 bp):
CATATCTTTGAAGATCACCTTCCATATCTGCCAAG
Found at i:76507425 original size:32 final size:32
Alignment explanation
Indices: 76507388--76507451 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
76507378 AGAGATAGAC
76507388 TTAGAGATCCTAGGCTCTATTTTAAATACGAT
1 TTAGAGATCCTAGGCTCTATTTTAAATACGAT
*
76507420 TTAGAGATCCTAGGCTCTGTTTTAAATACGAT
1 TTAGAGATCCTAGGCTCTATTTTAAATACGAT
76507452 GTTTACCAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.38
Consensus pattern (32 bp):
TTAGAGATCCTAGGCTCTATTTTAAATACGAT
Found at i:76511682 original size:55 final size:54
Alignment explanation
Indices: 76511540--76511748 Score: 223
Period size: 55 Copynumber: 3.9 Consensus size: 54
76511530 TCCTTTTTAA
*
76511540 AACTTACCATTGCCATGTCTTGACATGGTCTTACATG-GTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTGCCTTATG
* * * *
76511593 AAGTCACCAATGCCATGCCTTGGCATGGTCTTACATGAG-A-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCC-TTGCCTTAT-G
* *
76511647 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGA-TTTCCTTGCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTGCCTTATG
* * * *
76511700 AAACCTTACCAATTTCCATGCCTTGTCATGGTTTTACATG-GTATCCTTG
1 -AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGAGTATCCTTG
76511749 AACCCTAATG
Statistics
Matches: 129, Mismatches: 18, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 9 0.07
55 71 0.55
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTGCCTTATG
Found at i:76511692 original size:108 final size:110
Alignment explanation
Indices: 76511540--76511739 Score: 289
Period size: 108 Copynumber: 1.8 Consensus size: 110
76511530 TCCTTTTTAA
* * *
76511540 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-GTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
76511603 -TGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATAGT
* * *
76511648 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
* * *
76511713 TTCCATGCCTTGTCATGGTTTTACATG
66 TGCCATGCCTTGGCATGGTCTTACATG
76511740 GTATCCTTGA
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.61
109 6 0.08
110 24 0.30
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATAGT
Found at i:76515527 original size:29 final size:28
Alignment explanation
Indices: 76515495--76515597 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
76515485 GTGACGAGAT
* *
76515495 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
76515524 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
76515553 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
76515582 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76515598 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:76523490 original size:29 final size:28
Alignment explanation
Indices: 76523458--76523560 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
76523448 GTGACGAGAT
* *
76523458 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
76523487 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
76523516 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
76523545 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76523561 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:76533651 original size:40 final size:40
Alignment explanation
Indices: 76533592--76533760 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
76533582 CGGGACTTTA
* * *
76533592 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
76533632 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
76533672 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
76533712 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
76533752 CCCGGATAT
1 CCCGGATAT
76533761 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:76535950 original size:16 final size:16
Alignment explanation
Indices: 76535931--76535961 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76535921 CTTCTTCACT
76535931 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
76535947 TACTTACTTACTTAA
1 TACTCACTTACTTAA
76535962 TGAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:76535967 original size:20 final size:20
Alignment explanation
Indices: 76535928--76535967 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
76535918 AAACTTCTTC
* *
76535928 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATGAAAT
*
76535948 ACTTACTTACTTAATGAAAT
1 ACTTACTCACTTAATGAAAT
76535968 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.20, G:0.03, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATGAAAT
Found at i:76536282 original size:53 final size:54
Alignment explanation
Indices: 76536200--76536409 Score: 228
Period size: 55 Copynumber: 3.9 Consensus size: 54
76536190 ATCCTTTTTA
* * *
76536200 AAACTTACCATTGCCATGTCATGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * *
76536254 -AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G
* * * * * * *
76536308 TAACTTATCAATGCCATGTCTTGATATGGTCTTACATGATTTCCTTTCCTTA-G
1 AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* *
76536361 AAACCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTTG
1 AAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
76536410 AACCCTAATG
Statistics
Matches: 126, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
52 2 0.02
53 46 0.37
54 8 0.06
55 68 0.54
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:76541250 original size:13 final size:13
Alignment explanation
Indices: 76541232--76541257 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76541222 TAGTTTGCCG
76541232 CGTTTTTGTCTTT
1 CGTTTTTGTCTTT
76541245 CGTTTTTGTCTTT
1 CGTTTTTGTCTTT
76541258 TTTGTGTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.15, T:0.69
Consensus pattern (13 bp):
CGTTTTTGTCTTT
Found at i:76558721 original size:33 final size:33
Alignment explanation
Indices: 76558684--76558795 Score: 129
Period size: 33 Copynumber: 3.4 Consensus size: 33
76558674 TACCCAAGTG
* * *
76558684 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACCACTTGAAAAGGTTAGGTATACTTTGTGT
* *
76558717 GTA-CACTTGGAAAGGTTGGGTATACTTTGTGT
1 GTACCACTTGAAAAGGTTAGGTATACTTTGTGT
* **
76558749 ATACCA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTACCACT-TGAAAAGGTTAGGTATACTTTGTGT
76558782 GTACCACTTGAAAA
1 GTACCACTTGAAAA
76558796 AGAATGTACA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
32 27 0.42
33 37 0.57
34 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (33 bp):
GTACCACTTGAAAAGGTTAGGTATACTTTGTGT
Found at i:76559478 original size:30 final size:30
Alignment explanation
Indices: 76559444--76559513 Score: 140
Period size: 30 Copynumber: 2.3 Consensus size: 30
76559434 CACATAGGTA
76559444 TGACACACGGGCATGTGTCTAGGCCGTGTG
1 TGACACACGGGCATGTGTCTAGGCCGTGTG
76559474 TGACACACGGGCATGTGTCTAGGCCGTGTG
1 TGACACACGGGCATGTGTCTAGGCCGTGTG
76559504 TGACACACGG
1 TGACACACGG
76559514 TAAGCCCACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.19, C:0.24, G:0.36, T:0.21
Consensus pattern (30 bp):
TGACACACGGGCATGTGTCTAGGCCGTGTG
Found at i:76571090 original size:26 final size:26
Alignment explanation
Indices: 76571054--76571118 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
76571044 TTCGTCCTGG
76571054 CCCTCCCCTTTTTGAATCATCCCAGT
1 CCCTCCCCTTTTTGAATCATCCCAGT
* * *
76571080 CCCTCCCCTTTTAGAATTATCCCGGT
1 CCCTCCCCTTTTTGAATCATCCCAGT
*
76571106 -CCTTCCCTTTTTG
1 CCCTCCCCTTTTTG
76571119 GAACAAGAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 11 0.32
26 23 0.68
ACGTcount: A:0.12, C:0.40, G:0.09, T:0.38
Consensus pattern (26 bp):
CCCTCCCCTTTTTGAATCATCCCAGT
Found at i:76571397 original size:43 final size:42
Alignment explanation
Indices: 76571349--76571429 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 42
76571339 TAGGTACCTC
* *
76571349 GGATGT-ACGGGAGGCTTGAACACCATCGGCAACCTTGGTTCCT
1 GGATGTGA-GGGAGCCTTGAACAACATCGGC-ACCTTGGTTCCT
*
76571392 GGATGTGAGGGAGCCTTGAGCAACATCGGCACCTTGGT
1 GGATGTGAGGGAGCCTTGAACAACATCGGCACCTTGGT
76571430 GCCTCAAACA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 8 0.24
43 25 0.74
44 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.33, T:0.22
Consensus pattern (42 bp):
GGATGTGAGGGAGCCTTGAACAACATCGGCACCTTGGTTCCT
Found at i:76571489 original size:43 final size:42
Alignment explanation
Indices: 76571441--76571563 Score: 142
Period size: 43 Copynumber: 2.9 Consensus size: 42
76571431 CCTCAAACAC
*
76571441 CATCGGTAACCTTGGTGCCTAGATGTGTGGAAGCCTCGAGTAG
1 CATCGGT-ACCTTGGTGCCTGGATGTGTGGAAGCCTCGAGTAG
* * *
76571484 TATCGGTACCTTGGTACCTCGGATAGACG-GG-AGCCTCGAGTAG
1 CATCGGTACCTTGGTGCCT-GGAT-G-TGTGGAAGCCTCGAGTAG
*
76571527 CATCGGCACCTTGGTGCCTTGGATGTGTGGAAGCCTC
1 CATCGGTACCTTGGTGCC-TGGATGTGTGGAAGCCTC
76571564 AGACATCATC
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
41 1 0.02
42 14 0.21
43 46 0.70
44 4 0.06
45 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.33, T:0.25
Consensus pattern (42 bp):
CATCGGTACCTTGGTGCCTGGATGTGTGGAAGCCTCGAGTAG
Found at i:76571489 original size:69 final size:69
Alignment explanation
Indices: 76571367--76571503 Score: 175
Period size: 69 Copynumber: 2.0 Consensus size: 69
76571357 GGGAGGCTTG
* * * * *
76571367 AACACCATCGGCAACCTTGGTTCCTGGATGTGAGGGAGCCTTGAGCAACATCGGCACCTTGGTGC
1 AACACCATCGGCAACCTTGGTGCCTAGATGTGAGGAAGCCTCGAGCAACATCGGCACCTTGGTAC
76571432 CTCA
66 CTCA
* * * ** *
76571436 AACACCATCGGTAACCTTGGTGCCTAGATGTGTGGAAGCCTCGAGTAGTATCGGTACCTTGGTAC
1 AACACCATCGGCAACCTTGGTGCCTAGATGTGAGGAAGCCTCGAGCAACATCGGCACCTTGGTAC
76571501 CTC
66 CTC
76571504 GGATAGACGG
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
69 57 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (69 bp):
AACACCATCGGCAACCTTGGTGCCTAGATGTGAGGAAGCCTCGAGCAACATCGGCACCTTGGTAC
CTCA
Found at i:76571574 original size:43 final size:41
Alignment explanation
Indices: 76571527--76571648 Score: 97
Period size: 43 Copynumber: 2.9 Consensus size: 41
76571517 CCTCGAGTAG
76571527 CATCGGCACCTTGGTGCCTTGGATGTGTGGAAGCCTCAGACA
1 CATCGGCACCTTGGTGCCTTGGATGTGTGG-AGCCTCAGACA
* * * *
76571569 TCATCGGCGAACTAGG-CCCTTGG-TCGTGTAGGAGCCTCAGGCA
1 -CATCGGC-ACCTTGGTGCCTTGGAT-GTGT-GGAGCCTCAGACA
* * *
76571612 CTATCGACACCTTCGTG-CTTGGATGTGCGGGAGCCTC
1 C-ATCGGCACCTTGGTGCCTTGGATGTG-TGGAGCCTC
76571649 GAACACCATC
Statistics
Matches: 62, Mismatches: 10, Indels: 15
0.71 0.11 0.17
Matches are distributed among these distances:
42 22 0.35
43 33 0.53
44 7 0.11
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (41 bp):
CATCGGCACCTTGGTGCCTTGGATGTGTGGAGCCTCAGACA
Found at i:76571690 original size:43 final size:43
Alignment explanation
Indices: 76571639--76571743 Score: 147
Period size: 43 Copynumber: 2.4 Consensus size: 43
76571629 CTTGGATGTG
*
76571639 CGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTA
1 CGGGAGCCTCGAGCACCATCGACAACCTAGGCCCTTGGTCGTA
* * * *
76571682 CGGGAGCCTTGGGCACCATTGACAAGCTAGGCCCTTGGTCGTA
1 CGGGAGCCTCGAGCACCATCGACAACCTAGGCCCTTGGTCGTA
**
76571725 CAAGAGCCTCGAGCACCAT
1 CGGGAGCCTCGAGCACCAT
76571744 TGGCACCTTG
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (43 bp):
CGGGAGCCTCGAGCACCATCGACAACCTAGGCCCTTGGTCGTA
Found at i:76571697 original size:85 final size:86
Alignment explanation
Indices: 76571528--76571690 Score: 206
Period size: 85 Copynumber: 1.9 Consensus size: 86
76571518 CTCGAGTAGC
* * * * *
76571528 ATCGGCACCTTGGTGCCTTGGATGTGTGGAAGCCTCAGACATCATCGGCGAACTAGGCCCTTGGT
1 ATCGACACCTTCGTGCCTTGGATGTGCGGAAGCCTCAGACACCATCGACGAACTAGGCCCTTGGT
**
76571593 CGTGTAGGAGCCTCAGGCACT
66 CGTACAGGAGCCTCAGGCACT
*
76571614 ATCGACACCTTCGTG-CTTGGATGTGCGGGAGCCTC-GAACACCATCGAC-AACCTAGGCCCTTG
1 ATCGACACCTTCGTGCCTTGGATGTGCGGAAGCCTCAG-ACACCATCGACGAA-CTAGGCCCTTG
*
76571676 GTCGTACGGGAGCCT
64 GTCGTACAGGAGCCT
76571691 TGGGCACCAT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
84 3 0.05
85 50 0.76
86 13 0.20
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (86 bp):
ATCGACACCTTCGTGCCTTGGATGTGCGGAAGCCTCAGACACCATCGACGAACTAGGCCCTTGGT
CGTACAGGAGCCTCAGGCACT
Found at i:76571816 original size:128 final size:128
Alignment explanation
Indices: 76571580--76571828 Score: 320
Period size: 128 Copynumber: 1.9 Consensus size: 128
76571570 CATCGGCGAA
** * * *
76571580 CTAGGCCCTTGGTCGTGTAGGAGCCTCAGGCACTATCGACACCTTCGTGCTTGGATGTGCGGGAG
1 CTAGGCCCTTGGTCGTACAAGAGCCTCAGGCACCATCGACACCTTCGTGCTTAGATGTGCGGGAG
* *
76571645 CCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTACGGGAGCCTTGGGCACCATTGACAAG
66 CCTCGAACACCATCGACAACCTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATTGACAAG
* * * *
76571708 CTAGGCCCTTGGTCGTACAAGAGCCTC-GAGCACCATTGGCACCTTGGTGCTTAGATGTGTGGGA
1 CTAGGCCCTTGGTCGTACAAGAGCCTCAG-GCACCATCGACACCTTCGTGCTTAGATGTGCGGGA
* * * * * * *
76571772 TCCTTGGACACCATCGGCAACCTAGGCCCTTGGTCATGCTGGAGCCTCGGGTACCAT
65 GCCTCGAACACCATCGACAACCTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCAT
76571829 CAGCACCCTC
Statistics
Matches: 102, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
127 1 0.01
128 101 0.99
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.22
Consensus pattern (128 bp):
CTAGGCCCTTGGTCGTACAAGAGCCTCAGGCACCATCGACACCTTCGTGCTTAGATGTGCGGGAG
CCTCGAACACCATCGACAACCTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATTGACAAG
Found at i:76577435 original size:40 final size:39
Alignment explanation
Indices: 76577390--76577519 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
76577380 CGGAATACAA
76577390 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
76577430 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
76577470 CCGGATATAGCCGCTAGCAC-AATTGCCTTCGAGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
76577510 CCGGATATAA
1 CCGGATATAA
76577520 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:76597454 original size:24 final size:24
Alignment explanation
Indices: 76597422--76597508 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
76597412 AATCTCAAAT
76597422 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
76597446 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
76597470 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
76597494 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
76597509 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:76597474 original size:48 final size:48
Alignment explanation
Indices: 76597422--76597530 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
76597412 AATCTCAAAT
** *
76597422 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
76597470 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
76597518 GCACTATGTGTGC
1 GCACTATGTGTGC
76597531 AACGTTGGTT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:76597521 original size:24 final size:24
Alignment explanation
Indices: 76597422--76597530 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
76597412 AATCTCAAAT
*
76597422 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
76597446 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
76597470 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
76597494 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
76597518 GCACTATGTGTGC
1 GCACTATGTGTGC
76597531 AACGTTGGTT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:76605201 original size:24 final size:24
Alignment explanation
Indices: 76605169--76605255 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
76605159 AATCTCAAAT
76605169 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
76605193 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
76605217 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
76605241 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
76605256 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:76605221 original size:48 final size:48
Alignment explanation
Indices: 76605169--76605277 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
76605159 AATCTCAAAT
** *
76605169 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
76605217 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
76605265 GCACTATGTGTGC
1 GCACTATGTGTGC
76605278 AACGTGTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:76605268 original size:24 final size:24
Alignment explanation
Indices: 76605169--76605277 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
76605159 AATCTCAAAT
*
76605169 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
76605193 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
76605217 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
76605241 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
76605265 GCACTATGTGTGC
1 GCACTATGTGTGC
76605278 AACGTGTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:76609806 original size:25 final size:25
Alignment explanation
Indices: 76609771--76609822 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
76609761 GCTGAATGCG
* **
76609771 ATGGCCTATTGTTGTTAAGTCGTCA
1 ATGGCCCATTGTTGTTAAAACGTCA
76609796 ATGGCCCATTGTTGTTAAAACGTCA
1 ATGGCCCATTGTTGTTAAAACGTCA
76609821 AT
1 AT
76609823 CCTTTTATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (25 bp):
ATGGCCCATTGTTGTTAAAACGTCA
Found at i:76618920 original size:27 final size:28
Alignment explanation
Indices: 76618890--76618959 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
76618880 ATAATAAGTC
*
76618890 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
76618917 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
76618945 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76618960 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:76626841 original size:27 final size:28
Alignment explanation
Indices: 76626811--76626880 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
76626801 ATAATAAGTC
*
76626811 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
76626838 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
76626866 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76626881 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:76628701 original size:43 final size:41
Alignment explanation
Indices: 76628625--76629241 Score: 449
Period size: 43 Copynumber: 14.5 Consensus size: 41
76628615 GGCACCAAGG
76628625 TGCCGATGGTGCCCGAGGCTC-CAGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTG-CCGAGGCTCTC-GCAC-ACCAAGGGCCTAGGT
* * * * ** *
76628668 TGCCGATGGTGTTCGAGTCTCCCACACATCCAAGCACCAAGG-
1 TGCCGATGGTG-CCGAGGCTCTCGCACA-CCAAGGGCCTAGGT
*
76628710 TGCCGATGGTGCCTGAGGCTCTCTCACAACCAA-GGCCTAGGT
1 TGCCGATGGTGCC-GAGGCTCTCGCAC-ACCAAGGGCCTAGGT
* * * * *
76628752 TGCCAACGGTACCCAAGGCTCTCACACGACCAAGGGCCTAGGT
1 TGCCGATGGT-GCCGAGGCTCTCGCAC-ACCAAGGGCCTAGGT
* * *
76628795 TGCCAATGGTGCCCAAGGCTCTCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTG-CCGAGGCTCTCGCAC-ACCAAGGGCCTAGGT
* *
76628838 TGCTGATGGTGCCTGAGGCTCTCGTACAGCCAAGGGCCTAGGT
1 TGCCGATGGTGCC-GAGGCTCTCGCACA-CCAAGGGCCTAGGT
* * *
76628881 TACCGATGGTGCCCGAGGCTCCCGCACGACCAAGTGCCTAGGT
1 TGCCGATGGTG-CCGAGGCTCTCGCAC-ACCAAGGGCCTAGGT
* * * * *** * *
76628924 TACCAATGGTGTCGAGGCTCCCGCACATCCAAACACCAATG-
1 TGCCGATGGTGCCGAGGCTCTCGCACA-CCAAGGGCCTAGGT
* * *
76628965 TGCCAATGGTGCCCGAGGCTTTCGCACGACTAAGGGCCTAGGT
1 TGCCGATGGTG-CCGAGGCTCTCGCAC-ACCAAGGGCCTAGGT
* *
76629008 TACCGATGGTGCCCGAGGCTCTCGCACGATCAAGGGCCTAGGT
1 TGCCGATGGTG-CCGAGGCTCTCGCAC-ACCAAGGGCCTAGGT
* * *
76629051 TGCCGATGGTGCCTGACGCTCTCGTACGACCAAGGGCCCAGGT
1 TGCCGATGGTGCC-GAGGCTCTCGCAC-ACCAAGGGCCTAGGT
* ** *
76629094 TGCCGATGGTGCCGAGGCTCCCGCACATCCAAGCACCAAGG-
1 TGCCGATGGTGCCGAGGCTCTCGCACA-CCAAGGGCCTAGGT
* * * *
76629135 TGTCGATGGTGCCTGAGTCTCTCGCACGACCAATGGCCTAGTT
1 TGCCGATGGTGCC-GAGGCTCTCGCAC-ACCAAGGGCCTAGGT
* *
76629178 TGCCGATAGTGTTCGAGGCT-TCCGCACATCC-AGGGCACTAAGG-
1 TGCCGATGGTG-CCGAGGCTCT-CGCACA-CCAAGGGC-CT-AGGT
* *
76629221 TGCCAATGCTGCTCGAGGCTC
1 TGCCGATGGTGC-CGAGGCTC
76629242 CCGTACATCT
Statistics
Matches: 463, Mismatches: 83, Indels: 55
0.77 0.14 0.09
Matches are distributed among these distances:
41 30 0.06
42 141 0.30
43 285 0.62
44 7 0.02
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (41 bp):
TGCCGATGGTGCCGAGGCTCTCGCACACCAAGGGCCTAGGT
Found at i:76629197 original size:170 final size:169
Alignment explanation
Indices: 76628601--76629247 Score: 646
Period size: 170 Copynumber: 3.8 Consensus size: 169
76628591 CTTTTCTTTA
* *
76628601 TCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGCCCGAGGCTC-CAGCACGACCAAGGGCCTA
1 TCCCGCACATCC-AAGCACCAAGGTGCCAATGGTGCCCGAGGCTCTC-GCACGACCAAGGGCCTA
* * * * ** *
76628665 GGTTGCCGATGGTGTTCGAGTCTCCCACACATCCAAGCACCAAGG-TGCCGATGGTGCCTGAGGC
64 GGTTGCCGATGGTGTCCGAGGCTCTCGCACAT-CAAGGGCCTAGGTTGCCGATGGTGCCTGAGGC
* * * *
76628729 TCTC-TCACAACCAA-GGCCTAGGTTGCCAACGGTACCCAAGGC
128 TCTCGT-ACGACCAAGGGCCTAGGTTGCCAATGGT-GCCGAGGC
* * ** * * *
76628771 TCTCACACGA-CCAAGGGCCTAGGTTGCCAATGGTGCCCAAGGCTCTCACACGACCAAGGGCCTA
1 TCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTA
* * * * *
76628835 GGTTGCTGATGGTG-CCTGAGGCTCTCGTACAGCCAAGGGCCTAGGTTACCGATGGTGCCCGAGG
64 GGTTGCCGATGGTGTCC-GAGGCTCTCGCACA-TCAAGGGCCTAGGTTGCCGATGGTGCCTGAGG
* * * * *
76628899 CTCCCGCACGACCAAGTGCCTAGGTTACCAATGGTGTCGAGGC
127 CTCTCGTACGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGC
* * * *
76628942 TCCCGCACATCCAAACACCAATGTGCCAATGGTGCCCGAGGCTTTCGCACGACTAAGGGCCTAGG
1 TCCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGG
* * *
76629007 TTACCGATGGTGCCCGAGGCTCTCGCACGATCAAGGGCCTAGGTTGCCGATGGTGCCTGACGCTC
66 TTGCCGATGGTGTCCGAGGCTCTCGCAC-ATCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTC
* *
76629072 TCGTACGACCAAGGGCCCAGGTTGCCGATGGTGCCGAGGC
130 TCGTACGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGC
* * * * * *
76629112 TCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCTGAGTCTCTCGCACGACCAATGGCCTAGT
1 TCCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGG
* * * * *
76629177 TTGCCGATAGTGTTCGAGGCT-TCCGCACATCCAGGGCACTAAGG-TGCCAATGCTG-CTCGAGG
66 TTGCCGATGGTGTCCGAGGCTCT-CGCACATCAAGGGC-CT-AGGTTGCCGATGGTGCCT-GAGG
*
76629239 CTCCCGTAC
127 CTCTCGTAC
76629248 ATCTGAGGCA
Statistics
Matches: 388, Mismatches: 74, Indels: 30
0.79 0.15 0.06
Matches are distributed among these distances:
169 19 0.05
170 299 0.77
171 54 0.14
172 16 0.04
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.18
Consensus pattern (169 bp):
TCCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGG
TTGCCGATGGTGTCCGAGGCTCTCGCACATCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCT
CGTACGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGC
Found at i:76629197 original size:213 final size:212
Alignment explanation
Indices: 76628625--76629204 Score: 661
Period size: 213 Copynumber: 2.7 Consensus size: 212
76628615 GGCACCAAGG
* * ** *
76628625 TGCCGATGGTGCCCGAGGCTC-CAGCACGACCAAGGGCCTAGGTTGCCGATGGTGTTCGAGTCTC
1 TGCCGATGGTGCCTGAGGCTCTC-GTACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
* * * *
76628689 CCACACATCCAAGCACCAAGGTGCCGATGGTGCCTGAGGCTCTCTCACAACCAAGGCCTAGGTTG
65 CCGCACATCCAAGCACCAAGGTGTCGATGGTGCCTGAGGCTCTCGCAC-ACCAAGGCCTAGTTTG
* * * * * *
76628754 CCAACGGTACCCAAGGCTCTCACACGACCAAGGGCCTAGGTTGCCAATGGTGCCCAAGGCTCTCA
129 CCAATGGTGCCCGAGGCTTTCGCACGACCAAGGGCCTAGGTTACCAATGGTGCCCAAGGCTCTCA
76628819 CACGACCAAGGGCCTAGGT
194 CACGACCAAGGGCCTAGGT
* *
76628838 TGCTGATGGTGCCTGAGGCTCTCGTAC-AGCCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTC
1 TGCCGATGGTGCCTGAGGCTCTCGTACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTC
** * * * * * * *
76628902 CCGCACGA-CCAAGTGCCTAGGT-TACCAATGGTGTC-GAGGCTCCCGCACATCCAA-ACACCAA
65 CCGCAC-ATCCAAGCACCAAGGTGT--CGATGGTGCCTGAGGCTCTCGCACA-CCAAGGC-CTAG
* * * *
76628963 TGTGCCAATGGTGCCCGAGGCTTTCGCACGACTAAGGGCCTAGGTTACCGATGGTGCCCGAGGCT
125 TTTGCCAATGGTGCCCGAGGCTTTCGCACGACCAAGGGCCTAGGTTACCAATGGTGCCCAAGGCT
* *
76629028 CTCGCACGATCAAGGGCCTAGGT
190 CTCACACGACCAAGGGCCTAGGT
* *
76629051 TGCCGATGGTGCCTGACGCTCTCGTACGACCAAGGGCCCAGGTTGCCGATGGTG-CCGAGGCTCC
1 TGCCGATGGTGCCTGAGGCTCTCGTACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
76629115 CGCACATCCAAGCACCAAGGTGTCGATGGTGCCTGAGTCTCTCGCACGACCAATGGCCTAGTTTG
66 CGCACATCCAAGCACCAAGGTGTCGATGGTGCCTGAGGCTCTCGCAC-ACCAA-GGCCTAGTTTG
* * ** *
76629180 CCGATAGTGTTCGAGGCTTCCGCAC
129 CCAATGGTGCCCGAGGCTTTCGCAC
76629205 ATCCAGGGCA
Statistics
Matches: 301, Mismatches: 52, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
211 9 0.03
212 44 0.15
213 236 0.78
214 12 0.04
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (212 bp):
TGCCGATGGTGCCTGAGGCTCTCGTACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
CGCACATCCAAGCACCAAGGTGTCGATGGTGCCTGAGGCTCTCGCACACCAAGGCCTAGTTTGCC
AATGGTGCCCGAGGCTTTCGCACGACCAAGGGCCTAGGTTACCAATGGTGCCCAAGGCTCTCACA
CGACCAAGGGCCTAGGT
Found at i:76629258 original size:43 final size:43
Alignment explanation
Indices: 76629094--76629674 Score: 340
Period size: 43 Copynumber: 13.6 Consensus size: 43
76629084 GGGCCCAGGT
* *
76629094 TGCCGATGGTGC-CGAGGCTCCCGCACATC-CAAGCACCAAGG
1 TGCCGATGCTGCTCGAGGCTCCCGCACATCTCAGGCACCAAGG
* * * * * *
76629135 TGTCGATGGTGC-CTGAGTCTCTCGCACGA-C-CAATGG--CCTAGTT
1 TGCCGATGCTGCTC-GAGGCTCCCGCAC-ATCTC-A-GGCACCAAG-G
* * *
76629178 TGCCGATAG-TGTTCGAGGCTTCCGCACATC-CAGGGCACTAAGG
1 TGCCGAT-GCTGCTCGAGGCTCCCGCACATCTCA-GGCACCAAGG
* * * *
76629221 TGCCAATGCTGCTCGAGGCTCCCGTACATCTGAGGCACCAATG
1 TGCCGATGCTGCTCGAGGCTCCCGCACATCTCAGGCACCAAGG
** * * *
76629264 TAACGATGCTGCTCGAGGCTTCAGCATATC-CAGGCACCAAGG
1 TGCCGATGCTGCTCGAGGCTCCCGCACATCTCAGGCACCAAGG
*
76629306 TTGCCGATTG-TG-TCCGAGGCTCCCGCACATC-CAAGCACCAAGG
1 -TGCCGA-TGCTGCT-CGAGGCTCCCGCACATCTCAGGCACCAAGG
* * * * *
76629349 TACCGATGTTGCTCGAGGCTCCTGCACATCTAAGGCAACAAGG
1 TGCCGATGCTGCTCGAGGCTCCCGCACATCTCAGGCACCAAGG
* * *
76629392 TGCTGATGCTGCTCGAGGCTCCCGCACATC-CTAGGTACCAAGA
1 TGCCGATGCTGCTCGAGGCTCCCGCACATCTC-AGGCACCAAGG
* * * * * * *
76629435 TGCTGATGTTGCTTGATGCTCTCGTACATC-CAAGCA-CAAGG
1 TGCCGATGCTGCTCGAGGCTCCCGCACATCTCAGGCACCAAGG
* * * * *
76629476 TTGCTGATGGTG-TCCGAGGCTCCTAG-ATATC-CAAGCACCAAGG
1 -TGCCGATGCTGCT-CGAGGCTCC-CGCACATCTCAGGCACCAAGG
* * *
76629519 TGCTGATGCTGCTCGAGGCTCTCGCACATC-CAAGGTACCAAGG
1 TGCCGATGCTGCTCGAGGCTCCCGCACATCTC-AGGCACCAAGG
* * * *
76629562 TGCCAATACTGCTCGAGGCTCCCACACATC-CGAGGCACCAAGT
1 TGCCGATGCTGCTCGAGGCTCCCGCACATCTC-AGGCACCAAGG
* * * * * *
76629605 TGCTGATGGTGCTCGAAGCTCCCGCATATCTGAGGCACCAATG
1 TGCCGATGCTGCTCGAGGCTCCCGCACATCTCAGGCACCAAGG
* * * * *
76629648 TGCCAATGGTGCTTGAGGTTCTCGCAC
1 TGCCGATGCTGCTCGAGGCTCCCGCAC
76629675 CACTGACGTC
Statistics
Matches: 418, Mismatches: 95, Indels: 52
0.74 0.17 0.09
Matches are distributed among these distances:
41 20 0.05
42 108 0.26
43 281 0.67
44 9 0.02
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.22
Consensus pattern (43 bp):
TGCCGATGCTGCTCGAGGCTCCCGCACATCTCAGGCACCAAGG
Found at i:76629406 original size:128 final size:129
Alignment explanation
Indices: 76628935--76629650 Score: 476
Period size: 128 Copynumber: 5.6 Consensus size: 129
76628925 ACCAATGGTG
* * * * **
76628935 TCGAGGCTCCCGCACATCCAAACACCAATGTGCCAATGGTGCCCGAGGCTTTCGCACGA-CTAAG
1 TCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCAC-ATCTAAG
* * * * * * * * *
76628999 G-GCCTAGGTTACCGATGGTGCCCGAGGCTCTCGCACGAT-CAAGG-GCCTAGGTTGCCGATGGT
65 GCACCAAGG-TGCTGATGCTGCTCGAGGCT-TCGCAC-ATCCAAGGTACCAAGGTTGCCGATAGT
*
76629061 GCC
127 GTC
* * * ** * *
76629064 T-GACGCTCTCGTACGA-CCAAGGGCCCAGGTTGCCGATGGTGC-CGAGGCTCCCGCACATCCAA
1 TCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCACATCTAA
* * * *
76629126 -GCACCAAGGTG-TCGATGGTGC-CTGAGTCTCTCGCACGA-CCAATGG--CCTAGTTTGCCGAT
64 GGCACCAAGGTGCT-GATGCTGCTC-GAGGCT-TCGCAC-ATCCAA-GGTACCAAGGTTGCCGAT
76629185 AGTGT-
124 AGTGTC
* * * * * * *
76629190 TCGAGGCTTCCGCACATCCAGGGCACTAAGGTGCCAATGCTGCTCGAGGCTCCCGTACATCTGAG
1 TCGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCTAAG
* * * * *
76629255 GCACCAATGTAAC-GATGCTGCTCGAGGCTTCAGCATATCC-AGGCACCAAGGTTGCCGATTGTG
65 GCACCAAGGT-GCTGATGCTGCTCGAGGCTTC-GCACATCCAAGGTACCAAGGTTGCCGATAGTG
76629318 TC
128 TC
* * *
76629320 -CGAGGCTCCCGCACATCCAAGCACCAAGGTACCGATGTTGCTCGAGGCTCCTGCACATCTAAGG
1 TCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCTAAGG
* * * * *
76629384 CAACAAGGTGCTGATGCTGCTCGAGGCTCCCGCACATCCTAGGTACCAA-GATGCTGAT-GT-TG
66 CACCAAGGTGCTGATGCTGCTCGAGGCT-TCGCACATCCAAGGTACCAAGGTTGCCGATAGTGT-
76629446 C
129 C
* * * * * * * *
76629447 TTGATGCTCTCGTACATCCAAGCA-CAAGGTTGCTGATGGTG-TCCGAGGCTCCTAG-ATATCCA
1 TCGAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTGCT-CGAGGCTCC-CGCACATCTA
* *
76629509 A-GCACCAAGGTGCTGATGCTGCTCGAGGCTCTCGCACATCCAAGGTACCAAGG-TGCCAATACT
63 AGGCACCAAGGTGCTGATGCTGCTCGAGGCT-TCGCACATCCAAGGTACCAAGGTTGCCGATAGT
76629572 G-C
127 GTC
* * * * * * *
76629574 TCGAGGCTCCCACACATCCGAGGCACCAAGTTGCTGATGGTGCTCGAAGCTCCCGCATATCTGAG
1 TCGAGGCTCCCGCACATCC-AAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCTAAG
*
76629639 GCACCAATGTGC
65 GCACCAAGGTGC
76629651 CAATGGTGCT
Statistics
Matches: 463, Mismatches: 87, Indels: 74
0.74 0.14 0.12
Matches are distributed among these distances:
126 4 0.01
127 146 0.32
128 213 0.46
129 99 0.21
130 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.21
Consensus pattern (129 bp):
TCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCTAAGG
CACCAAGGTGCTGATGCTGCTCGAGGCTTCGCACATCCAAGGTACCAAGGTTGCCGATAGTGTC
Found at i:76629534 original size:170 final size:171
Alignment explanation
Indices: 76629190--76629617 Score: 467
Period size: 170 Copynumber: 2.5 Consensus size: 171
76629180 CCGATAGTGT
* * ** *
76629190 TCGAGGCT-TCCGCACATCCAGGGC-ACTAAGGTGCCAATGCTGCTCGAGGCTCCCGTACATCTG
1 TCGAGGCTCT-CGCACATCCAAGGCAAC-AAGGTGCCAATACTGCTCGAGGCTCCCACACATCCG
* * * * * * * *
76629253 AGGCACCAATG-TAAC-GATGCTGCTCGAGGCT-TCAGCATATCCAGGCACCAAGGTTGCCGATT
64 AGGCACCAA-GAT-GCTGATGGTGCTTGATGCTCTC-GTACATCCAAGCACCAAGGTTGCCGATG
* *
76629315 GTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTACCGATGTTGC
126 GTGTCCGAGGCTCCAGCACATCCAAGCACCAAGGTACCGATGCTGC
* ** * * *
76629361 TCGAGGCTC-CTGCACATCTAAGGCAACAAGGTGCTGATGCTGCTCGAGGCTCCCGCACATCCTA
1 TCGAGGCTCTC-GCACATCCAAGGCAACAAGGTGCCAATACTGCTCGAGGCTCCCACACATCCGA
* * *
76629425 GGTACCAAGATGCTGATGTTGCTTGATGCTCTCGTACATCCAAGCA-CAAGGTTGCTGATGGTGT
65 GGCACCAAGATGCTGATGGTGCTTGATGCTCTCGTACATCCAAGCACCAAGGTTGCCGATGGTGT
* * *
76629489 CCGAGGCTCCTAG-ATATCCAAGCACCAAGGTGCTGATGCTGC
130 CCGAGGCTCC-AGCACATCCAAGCACCAAGGTACCGATGCTGC
* *
76629531 TCGAGGCTCTCGCACATCCAAGGTACCAAGGTGCCAATACTGCTCGAGGCTCCCACACATCCGAG
1 TCGAGGCTCTCGCACATCCAAGGCAACAAGGTGCCAATACTGCTCGAGGCTCCCACACATCCGAG
*
76629596 GCACCAAGTTGCTGATGGTGCT
66 GCACCAAGATGCTGATGGTGCT
76629618 CGAAGCTCCC
Statistics
Matches: 216, Mismatches: 33, Indels: 17
0.81 0.12 0.06
Matches are distributed among these distances:
170 128 0.59
171 84 0.39
172 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (171 bp):
TCGAGGCTCTCGCACATCCAAGGCAACAAGGTGCCAATACTGCTCGAGGCTCCCACACATCCGAG
GCACCAAGATGCTGATGGTGCTTGATGCTCTCGTACATCCAAGCACCAAGGTTGCCGATGGTGTC
CGAGGCTCCAGCACATCCAAGCACCAAGGTACCGATGCTGC
Found at i:76638589 original size:47 final size:47
Alignment explanation
Indices: 76638531--76638652 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
76638521 GCATTGGCAC
*
76638531 TAAGACAAGGATACCATGTAAGATCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
76638578 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
76638625 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
76638653 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:76638695 original size:54 final size:54
Alignment explanation
Indices: 76638631--76638838 Score: 222
Period size: 54 Copynumber: 3.9 Consensus size: 54
76638621 TTGGTAAGAT
* *
76638631 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * * * *
76638685 AAGGAAATCATGTAAGACCATGTCAAGACATGGAATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGG-C
* * ** * *
76638741 AAGG-TCCCATCTAAGACCATGCCAAGGGATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
76638793 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
76638839 AAAAAGGAAA
Statistics
Matches: 127, Mismatches: 24, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
52 4 0.03
53 39 0.31
54 41 0.32
55 39 0.31
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Done.