Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 252 of 335
Found at i:76656227 original size:40 final size:41
Alignment explanation
Indices: 76656172--76656373 Score: 197
Period size: 40 Copynumber: 5.0 Consensus size: 41
76656162 CGGATGATAA
*
76656172 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGGCTAATAT
* * *
76656212 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCT-ACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGGCTAATAT
* * *
76656252 CCGGGCTAAGTCTCGAAGGCGTTTGTGC--G-AGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA--ATAT
* ** *
76656292 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATAT
*
76656332 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATAT
76656372 CC
1 CC
76656374 AGCTAAACTC
Statistics
Matches: 134, Mismatches: 18, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
37 2 0.01
38 1 0.01
39 2 0.01
40 123 0.92
41 3 0.02
42 1 0.01
43 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATAT
Found at i:76656371 original size:80 final size:80
Alignment explanation
Indices: 76656168--76656373 Score: 274
Period size: 80 Copynumber: 2.6 Consensus size: 80
76656158 TGTTCGGATG
76656168 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCCGGGCTAAGTCCCGAAGG
*
76656231 CATTCGTGCGAGCTACT
64 CATTCGTGCAAGCTACT
* * * * * **
76656248 ATATCCGGGCTAAGTCTCGAAGGCGTTTGTGCGAGCT-ATTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TGGCTATATCCGGGCTAAGTCCCGAAGGC
* *
76656312 ATTTGTGCAAGTTACT
65 ATTCGTGCAAGCTACT
76656328 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC
76656374 AGCTAAACTC
Statistics
Matches: 105, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
79 1 0.01
80 100 0.95
81 4 0.04
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
TTCGTGCAAGCTACT
Found at i:76664282 original size:40 final size:40
Alignment explanation
Indices: 76664214--76664459 Score: 208
Period size: 40 Copynumber: 6.2 Consensus size: 40
76664204 AATGTTCGGA
* *
76664214 TAATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGC
1 TAATATCCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGT-GC
* * *
76664255 TAAT-TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTAC
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGC
* *
76664295 T-ATATCCGGGCTAAGTCCCGAA--CCTGTT-TG-TACGAGC
1 TAATATCCGGGCTAAGTCCCGAAGGCAT-TTGTGCTA-GTGC
*
76664332 TATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--
1 TA--ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGC
* * *
76664372 TATTATACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTAC
1 TAATAT-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGC
* *
76664414 T-ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGC
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GC
76664454 T-ATATC
1 TAATATC
76664460 TGGCTAAACT
Statistics
Matches: 167, Mismatches: 21, Indels: 35
0.75 0.09 0.16
Matches are distributed among these distances:
37 3 0.02
38 8 0.05
39 34 0.20
40 104 0.62
41 11 0.07
42 6 0.04
43 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGC
Found at i:76664432 original size:119 final size:120
Alignment explanation
Indices: 76664220--76664435 Score: 319
Period size: 119 Copynumber: 1.8 Consensus size: 120
76664210 CGGATAATAA
* * *
76664220 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
* *
76664285 TGCGAGCTACTATATCCGGGCTAAGTCCCGAACCTGTTTGTACGAGCTATTATAT
66 TGCAAGCTACTATAACCGGGCTAAGTCCCGAACCTGTTTGTACGAGCTATTATAT
* * * *
76664340 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTC
*
76664403 GTGCAAGTTACTATAACCGGGCTAAGTCCCGAA
65 GTGCAAGCTACTATAACCGGGCTAAGTCCCGAA
76664436 GGCATTTGAG
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
119 57 0.67
120 28 0.33
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACTATAACCGGGCTAAGTCCCGAACCTGTTTGTACGAGCTATTATAT
Found at i:76664465 original size:79 final size:78
Alignment explanation
Indices: 76664260--76664466 Score: 236
Period size: 79 Copynumber: 2.6 Consensus size: 78
76664250 GTGGCTAATT
* *
76664260 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAACCTGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT-CGGGCTAAGTCCCGAACCTATTTG
* * *
76664325 TACGAGCTATTATAT
64 TACAAGCTACTATAA
* * *
76664340 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATACCGGGCTAAGTCCCGAAGGC-ATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCGGGCTAAGTCCCGAA-CCTATTTG
* *
76664404 TGCAAGTTACTATAA
64 TACAAGCTACTATAA
* * * *
76664419 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCTGGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCGGGCTAA
76664467 ACTCCGAAGG
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
78 1 0.01
79 70 0.65
80 37 0.34
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCGGGCTAAGTCCCGAACCTATTTGTA
CAAGCTACTATAA
Found at i:76665861 original size:23 final size:25
Alignment explanation
Indices: 76665835--76665881 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
76665825 TATCATTCAT
*
76665835 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
76665858 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
76665882 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:76666202 original size:46 final size:46
Alignment explanation
Indices: 76666142--76666491 Score: 462
Period size: 46 Copynumber: 8.0 Consensus size: 46
76666132 TTTGACGTGA
* * * * ** * *
76666142 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
** * * *
76666188 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
76666234 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76666280 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76666326 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76666364 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76666410 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
76666448 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
76666492 AGAGCACACT
Statistics
Matches: 273, Mismatches: 15, Indels: 32
0.85 0.05 0.10
Matches are distributed among these distances:
38 66 0.24
39 2 0.01
40 6 0.02
41 2 0.01
43 2 0.01
44 6 0.02
45 2 0.01
46 187 0.68
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:76666258 original size:92 final size:84
Alignment explanation
Indices: 76666186--76666491 Score: 495
Period size: 84 Copynumber: 3.5 Consensus size: 84
76666176 TTTTTGTCAT
** * * *
76666186 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
76666251 ACCATGGTCTTACACATCTCATATCAG
66 ACCATGGTCTT--ACA---C--A-CAG
76666278 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
76666343 ACCATGGTCTTACACACAG
66 ACCATGGTCTTACACACAG
76666362 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
76666427 ACCATGGTCTTACACACAG
66 ACCATGGTCTTACACACAG
76666446 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
76666492 AGAGCACACT
Statistics
Matches: 209, Mismatches: 5, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
84 133 0.64
85 1 0.00
87 1 0.00
90 3 0.01
92 71 0.34
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (84 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
ACCATGGTCTTACACACAG
Found at i:76666372 original size:38 final size:38
Alignment explanation
Indices: 76666321--76666480 Score: 248
Period size: 38 Copynumber: 4.0 Consensus size: 38
76666311 CATTTCATAT
76666321 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
76666359 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A
76666404 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 -CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
76666443 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
76666481 TTTCATATCA
Statistics
Matches: 114, Mismatches: 0, Indels: 16
0.88 0.00 0.12
Matches are distributed among these distances:
38 71 0.62
39 1 0.01
40 3 0.03
41 1 0.01
43 1 0.01
44 3 0.03
45 1 0.01
46 33 0.29
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:76671838 original size:29 final size:29
Alignment explanation
Indices: 76671803--76671861 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
76671793 TAATGGAAAT
76671803 GCCTTATATTAATAAACATGGTAAATCAA
1 GCCTTATATTAATAAACATGGTAAATCAA
76671832 GCCTTATATTAATAAACATGGTAAATCAA
1 GCCTTATATTAATAAACATGGTAAATCAA
76671861 G
1 G
76671862 TATGTTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.31
Consensus pattern (29 bp):
GCCTTATATTAATAAACATGGTAAATCAA
Found at i:76671941 original size:14 final size:14
Alignment explanation
Indices: 76671922--76671951 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76671912 AACCCTTCAT
*
76671922 TCCCTCATTCATCA
1 TCCCTCATCCATCA
76671936 TCCCTCATCCATCA
1 TCCCTCATCCATCA
76671950 TC
1 TC
76671952 ATTCTTTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:76680628 original size:27 final size:28
Alignment explanation
Indices: 76680540--76680640 Score: 132
Period size: 27 Copynumber: 3.5 Consensus size: 28
76680530 ATCATGAGAT
* * *
76680540 TAGCACTAAGTGTGCGGGTTTAAAATTTGTA
1 TAGCACTAAGTGTGCGAGTTT--GA-TTATA
*
76680571 CAGCACTAAGTGTGCGAGTTTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
76680599 TAGCACTAAGTGTGCGAG-TTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
76680626 TAGCACTAAGTGTGC
1 TAGCACTAAGTGTGC
76680641 AGACTCACTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 24 0.37
28 21 0.32
29 1 0.02
31 19 0.29
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
TAGCACTAAGTGTGCGAGTTTGATTATA
Found at i:76683169 original size:48 final size:47
Alignment explanation
Indices: 76683041--76683187 Score: 181
Period size: 48 Copynumber: 3.1 Consensus size: 47
76683031 TAATATTGGG
* * *
76683041 AGATATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC
1 AGATATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC
* * *
76683088 A-ATATGAGAGTCAGTGTAAGATATGTATGGGACATGCATCAGCCTC
1 AGATATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC
* *
76683134 AAGATATTTA-AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC
1 -AGATA-TGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC
76683182 GAGATA
1 -AGATA
76683188 GACAAGTTAA
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
46 39 0.46
47 2 0.02
48 42 0.49
49 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (47 bp):
AGATATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC
Found at i:76683202 original size:48 final size:46
Alignment explanation
Indices: 76683054--76683219 Score: 174
Period size: 48 Copynumber: 3.5 Consensus size: 46
76683044 TATGAGTGCT
* *
76683054 AGTGTAAGACATGTCTGGGACATGCATCAGCCACA-ATATGAGAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAGATA-GAAAGTC
* * ** *
76683100 AGTGTAAGATATGTATGGGACATGCATCAGCCTCAAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTC-AGATA-GAAAGTC
* *
76683148 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGACAAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTC-AGATAGA-AAGTC
*
76683196 AATGTAAGAGC-TGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
76683220 GCGTCAACTT
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
46 31 0.31
47 1 0.01
48 67 0.67
49 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCAGATAGAAAGTC
Found at i:76686458 original size:28 final size:28
Alignment explanation
Indices: 76686418--76686473 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
76686408 AGATAGAGTC
76686418 GGAGTGATTACGAACTCCCCTGTCTTAG
1 GGAGTGATTACGAACTCCCCTGTCTTAG
76686446 GGAGTGATTACGAACTCCCCTGTCTTAG
1 GGAGTGATTACGAACTCCCCTGTCTTAG
76686474 CTTTAGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (28 bp):
GGAGTGATTACGAACTCCCCTGTCTTAG
Found at i:76709023 original size:94 final size:95
Alignment explanation
Indices: 76708859--76709037 Score: 252
Period size: 94 Copynumber: 1.9 Consensus size: 95
76708849 ACCACAATAT
*** * *
76708859 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATTTAAGCCAGTGTAAGAT
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGACAAGCCAGAGTAAGAC
**
76708924 ATGTCTTGGACAT-GCATCGGCATTGAGAC
66 ATGTCTAAGACATGGCATCGGCATTGAGAC
* * *
76708953 GAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATAGACAAGCTAGAGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGACAAGCCAGAGTAAGAC
*
76709018 CTGTCTAAGACATGGCATCG
66 ATGTCTAAGACATGGCATCG
76709038 ACACCGATAG
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
94 67 0.92
95 6 0.08
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (95 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGACAAGCCAGAGTAAGAC
ATGTCTAAGACATGGCATCGGCATTGAGAC
Found at i:76709030 original size:48 final size:47
Alignment explanation
Indices: 76708817--76709138 Score: 208
Period size: 46 Copynumber: 6.7 Consensus size: 47
76708807 AGATATGTGT
* * * * *
76708817 GCTAGGGTAAGACATGTCTGGGTCATGCATCGACCAC-A-ATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA-GAAA
* **
76708863 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA-GAAA
* * * * * * *
76708911 GCCAGTGTAAGATATGTCTTGGACATGCATCGGCATTGAGA-CGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGAAA
*
76708957 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATAGACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGA-AA
* * ** *
76709005 GCTAGAGTAAGACCTGTCTAAGACATGGCATCGACAC-CGATAGAT-GAAA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCG--AGATAGAAA
* * * ** *
76709054 GGTAGTGCGAAAAC-TGTCTAAGACATGGCATCGGCCTC-ACTATATGAAA
1 GCTAGTG-TAAGACATGTCTGGGACAT-GCATCGGCCTCGA-GATA-GAAA
* * *
76709103 GCCAATGTAAGACCATGTCTGGGACATTGCGTCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACA-TGCATCGGC
76709139 ATCATAACCC
Statistics
Matches: 216, Mismatches: 44, Indels: 28
0.75 0.15 0.10
Matches are distributed among these distances:
46 69 0.32
47 5 0.02
48 68 0.31
49 46 0.21
50 23 0.11
51 5 0.02
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGAAA
Found at i:76710325 original size:20 final size:21
Alignment explanation
Indices: 76710286--76710325 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
76710276 CATGTTAGGA
76710286 CCACACAGGCATGTTGCCCTT
1 CCACACAGGCATGTTGCCCTT
* *
76710307 CCACACGGGCGTG-TGCCCT
1 CCACACAGGCATGTTGCCCT
76710326 ATTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CCACACAGGCATGTTGCCCTT
Found at i:76718787 original size:55 final size:54
Alignment explanation
Indices: 76718700--76718954 Score: 262
Period size: 55 Copynumber: 4.8 Consensus size: 54
76718690 ATTAGGGTTT
*
76718700 AAGGATACCATGTAAGACCATG-CTAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
76718755 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * *
76718810 TAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
76718863 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * * *
76718912 AAGGATACCACGTAAGACCATGACAAGTCATGG-AAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
76718955 GTACCCGCGT
Statistics
Matches: 171, Mismatches: 20, Indels: 24
0.80 0.09 0.11
Matches are distributed among these distances:
48 2 0.01
49 37 0.22
52 7 0.04
53 41 0.24
54 12 0.07
55 67 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:76718906 original size:108 final size:110
Alignment explanation
Indices: 76718707--76718907 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
76718697 TTTAAGGATA
* *
76718707 CCATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
76718772 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCTAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCTAAGGTC
* *
76718817 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
76718879 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
76718908 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCTAAGGTC
Found at i:76719167 original size:16 final size:16
Alignment explanation
Indices: 76719146--76719176 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76719136 ATAAATTTGA
76719146 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
76719162 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
76719177 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:76727080 original size:55 final size:53
Alignment explanation
Indices: 76726999--76727198 Score: 181
Period size: 55 Copynumber: 3.7 Consensus size: 53
76726989 GTTTAAGGAT
* *
76726999 ACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTATCTAAGGCAACGA
1 ACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGGTATCTAAGGCAAAGA
* * * * * * *
76727053 ACTCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGACAAAGG
1 AC-CATGTAAGACCATGCCAAGACATGGAATTGGTAAGGTA-TCTAAGGCAAAGA
* * * * *
76727108 TCCTATGTAAGACCATGCCAAGGCATGGCATTGGTGA-GT-TCATAAGGCAAGGA
1 ACC-ATGTAAGACCATGCCAAGACATGGAATTGGTAAGGTATC-TAAGGCAAAGA
*
76727161 TACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAG
1 -ACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAG
76727199 TTTCAAAAGG
Statistics
Matches: 115, Mismatches: 24, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
52 1 0.01
53 35 0.30
54 17 0.15
55 62 0.54
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
ACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGGTATCTAAGGCAAAGA
Found at i:76727199 original size:108 final size:110
Alignment explanation
Indices: 76727002--76727200 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 110
76726992 TAAGGATACC
76727002 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTATCTAAGGCAACGAACTCATGTAAGACC
1 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTATCTAAGGCAACGAACTCATGTAAGACC
*
76727067 ATGTCAAGACATGGCATTGATAAGTTACTATAAGACAAAGGTCCT
66 ATGTCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTCCT
* * *
76727112 ATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-GT-TCATAAGGCAAGGATAC-CATGTAAGA
1 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTATC-TAAGGCAACGA-ACTCATGTAAGA
*
76727173 CCATGTCAAGACATGGCAATGGTAAGTT
64 CCATGTCAAGACATGGCAATGATAAGTT
76727201 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
107 2 0.02
108 47 0.57
109 9 0.11
110 24 0.29
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTATCTAAGGCAACGAACTCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTCCT
Found at i:76731627 original size:41 final size:41
Alignment explanation
Indices: 76731556--76731774 Score: 332
Period size: 41 Copynumber: 5.4 Consensus size: 41
76731546 GCTTTTTTGT
* **
76731556 TAAAACACCGCTAAA-AATAGAGCATTAGCGGCGCTTTCGG
1 TAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCGG
* *
76731596 TAAAACGCAGCTAAAGACCAGAGCATTAGCGGTGCTTTCGG
1 TAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCGG
*
76731637 AAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCGG
1 TAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCGG
*
76731678 AAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCGG
1 TAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCGG
* * * *
76731719 TAAAATGCCACTAAATACCAGAGCATTAGCGGCGCTTTTGG
1 TAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCGG
76731760 TAAAACGCCGCTAAA
1 TAAAACGCCGCTAAA
76731775 AGTCATATAG
Statistics
Matches: 163, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 13 0.08
41 150 0.92
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.18
Consensus pattern (41 bp):
TAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCGG
Found at i:76731838 original size:78 final size:79
Alignment explanation
Indices: 76731744--76731897 Score: 292
Period size: 78 Copynumber: 2.0 Consensus size: 79
76731734 TACCAGAGCA
*
76731744 TTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCATATAGTCTTAAAATTCTAAACCCT-AAAA
1 TTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCATATAGTATTAAAATTCTAAACCCTAAAAA
76731808 AACCATAAAACGCT
66 AACCATAAAACGCT
76731822 TTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCATATAGTATTAAAATTCTAAACCCTAAAAA
1 TTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCATATAGTATTAAAATTCTAAACCCTAAAAA
76731887 AACCATAAAAC
66 AACCATAAAAC
76731898 ACTAATCTAT
Statistics
Matches: 74, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
78 59 0.80
79 15 0.20
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.25
Consensus pattern (79 bp):
TTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGTCATATAGTATTAAAATTCTAAACCCTAAAAA
AACCATAAAACGCT
Found at i:76732546 original size:2 final size:2
Alignment explanation
Indices: 76732539--76732572 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
76732529 GAATTTTTAT
* *
76732539 TA TA TA TA TA TA TA TA TA AA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76732573 AAAATACATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
TA
Found at i:76732554 original size:10 final size:10
Alignment explanation
Indices: 76732539--76732572 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
76732529 GAATTTTTAT
*
76732539 TATATATATA
1 TATATATAAA
76732549 TATATATAAA
1 TATATATAAA
76732559 TATATATAAA
1 TATATATAAA
76732569 TATA
1 TATA
76732573 AAAATACATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TATATATAAA
Found at i:76733118 original size:14 final size:14
Alignment explanation
Indices: 76733101--76733178 Score: 77
Period size: 14 Copynumber: 5.4 Consensus size: 14
76733091 AATCTTCAAA
*
76733101 AAAAATTAAAATTT
1 AAAAATAAAAATTT
76733115 AAAAATAAAAAATTT
1 AAAAAT-AAAAATTT
*
76733130 AAAAATAAAGAA-TA
1 AAAAATAAA-AATTT
* *
76733144 AAAAATAAAAAATA
1 AAAAATAAAAATTT
*
76733158 AAAAATAAAAAACTT
1 AAAAAT-AAAAATTT
76733173 AAAAAT
1 AAAAAT
76733179 TTAATATTTA
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
13 2 0.04
14 27 0.48
15 27 0.48
ACGTcount: A:0.76, C:0.01, G:0.01, T:0.22
Consensus pattern (14 bp):
AAAAATAAAAATTT
Found at i:76733143 original size:7 final size:7
Alignment explanation
Indices: 76733100--76733169 Score: 86
Period size: 7 Copynumber: 9.9 Consensus size: 7
76733090 AAATCTTCAA
76733100 AAAAAAT
1 AAAAAAT
* *
76733107 TAAAATT
1 AAAAAAT
*
76733114 TAAAAAT
1 AAAAAAT
76733121 AAAAAATT
1 AAAAAA-T
*
76733129 TAAAAAT
1 AAAAAAT
*
76733136 AAAGAAT
1 AAAAAAT
76733143 AAAAAAT
1 AAAAAAT
76733150 AAAAAAT
1 AAAAAAT
76733157 AAAAAAT
1 AAAAAAT
76733164 AAAAAA
1 AAAAAA
76733170 CTTAAAAATT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
7 48 0.89
8 6 0.11
ACGTcount: A:0.79, C:0.00, G:0.01, T:0.20
Consensus pattern (7 bp):
AAAAAAT
Found at i:76733187 original size:7 final size:7
Alignment explanation
Indices: 76733177--76733201 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
76733167 AAACTTAAAA
76733177 ATTTAAT
1 ATTTAAT
76733184 ATTTAAT
1 ATTTAAT
76733191 ATTTAAT
1 ATTTAAT
76733198 ATTT
1 ATTT
76733202 TAGTCCATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTTAAT
Found at i:76736924 original size:37 final size:38
Alignment explanation
Indices: 76736870--76736998 Score: 219
Period size: 37 Copynumber: 3.4 Consensus size: 38
76736860 TTATTACGAA
*
76736870 GTCTTACCCGG-ACATAATCTCCACACGTAGTCATCGG
1 GTCTCACCCGGAACATAATCTCCACACGTAGTCATCGG
76736907 GTCGT-ACCCGG-ACATAATCTCCACACGTAGTCATCGG
1 GTC-TCACCCGGAACATAATCTCCACACGTAGTCATCGG
76736944 GTCTCACCCGGAACATAATCTCCACACGTAGTCATCGG
1 GTCTCACCCGGAACATAATCTCCACACGTAGTCATCGG
76736982 GTCTCACCCGGAACATA
1 GTCTCACCCGGAACATA
76736999 TTTCCAAGTT
Statistics
Matches: 89, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
36 1 0.01
37 44 0.49
38 44 0.49
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (38 bp):
GTCTCACCCGGAACATAATCTCCACACGTAGTCATCGG
Found at i:76737146 original size:49 final size:49
Alignment explanation
Indices: 76737093--76737685 Score: 943
Period size: 49 Copynumber: 12.5 Consensus size: 49
76737083 TTTCACATTA
*
76737093 GCCATTATGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
76737142 GCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
76737191 GCCATTAGGCCTTATCAC------AT--A-TTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
76737231 GCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
76737280 GCCATTAGGCCTTATCAC------AT--A-TTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
76737320 GCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
76737369 GCCATTAGGCCTTATCACATATATATACACTTTCGCATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
76737418 GCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
76737467 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCGTCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
* *
76737516 GCCATTAGGCCTTACCACATATATATACACTTTCGCATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
*
76737565 GCCATTAGGCCTTATCACATATATATACACTTTCGCATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
** *
76737614 GCCATTAGGCCTTATCACATATATATACACTTTTGCATTCATCACATCT
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
76737663 GCCATTAGGCCTTATCACATATA
1 GCCATTAGGCCTTATCACATATA
76737686 CTATTATGTA
Statistics
Matches: 508, Mismatches: 18, Indels: 36
0.90 0.03 0.06
Matches are distributed among these distances:
40 72 0.14
41 2 0.00
43 4 0.01
46 4 0.01
48 2 0.00
49 424 0.83
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:76741054 original size:15 final size:16
Alignment explanation
Indices: 76741034--76741064 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
76741024 GTTTTTATCT
76741034 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
76741049 TATATATGATCTAAAA
1 TATATATGATCTAAAA
76741065 GCAAGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:76742505 original size:43 final size:43
Alignment explanation
Indices: 76742440--76742573 Score: 207
Period size: 43 Copynumber: 3.1 Consensus size: 43
76742430 GATCATTATT
* * * *
76742440 TTTAGCGGCGTTTGTGAGAAAAGTGCCGCTAAAGGTTATGATC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
76742483 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
76742526 TTTAGCGGTGTTTGCT-AAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTG-TGAAAAAAGCGCCGCTAAAGGTCATGGTC
76742569 TTTAG
1 TTTAG
76742574 TTCGAAAAAC
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
43 84 0.99
44 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:76744871 original size:42 final size:42
Alignment explanation
Indices: 76744805--76745250 Score: 310
Period size: 42 Copynumber: 10.4 Consensus size: 42
76744795 GTGTCCCGTT
*
76744805 CATCCAAGCACCAAGGTG-CTGATGCTGCTCGAGGCTCCTGCA
1 CATCCAAGCACCAAGGTGTC-GATGCTGCTCGAGGCTCCCGCA
* * *
76744847 CATCCAAGCACCAAGTTGTCGATGCTGCTCGACGCTCTCGCA
1 CATCCAAGCACCAAGGTGTCGATGCTGCTCGAGGCTCCCGCA
* * * * * *
76744889 CATCTAAGCACCAAAGTGCTGGTGTTGGTGCTGTTCGAGGCTACCGTA
1 CATCCAAGCACC-AA-----GGTGTCGATGCTGCTCGAGGCTCCCGCA
*
76744937 CATCCAAGCACCAAGGTGTTGATGCTGCTCGAGGCTCCCGCA
1 CATCCAAGCACCAAGGTGTCGATGCTGCTCGAGGCTCCCGCA
* * * * * * * *
76744979 CATCCAA-CGTCCTAGATTATCGATGGTG-TCTTAGACTCTCAG-A
1 CATCCAAGC-ACCAAG-GTGTCGATGCTGCTC-GAGGCTC-CCGCA
* ** *
76745022 CATCTAAGCACCAAGGTACCGGTGCTGCTCGAGGCTCCCGCA
1 CATCCAAGCACCAAGGTGTCGATGCTGCTCGAGGCTCCCGCA
* * *
76745064 CATCTAAGCACCAATGTGTCGATGCTGCTCGAGGCTCCCGTA
1 CATCCAAGCACCAAGGTGTCGATGCTGCTCGAGGCTCCCGCA
* * * * * * *
76745106 CATCCAACCACTAAGGTGTCGGTACTACTCAAGGCTCCCACA
1 CATCCAAGCACCAAGGTGTCGATGCTGCTCGAGGCTCCCGCA
* * * * * * *
76745148 CATCTAAGCACCAAGGCGTGGATGCTGCTCTAAGCTCTCGCG
1 CATCCAAGCACCAAGGTGTCGATGCTGCTCGAGGCTCCCGCA
* * * * * *
76745190 CTTCCAA-CGTCCTAGGTTGTCGATGGTG-TCCGAGGCTCTCACA
1 CATCCAAGC-ACCAAGG-TGTCGATGCTGCT-CGAGGCTCCCGCA
76745233 CATCCAAGCACCAAGGTG
1 CATCCAAGCACCAAGGTG
76745251 CCAATGGTGT
Statistics
Matches: 307, Mismatches: 79, Indels: 36
0.73 0.19 0.09
Matches are distributed among these distances:
41 4 0.01
42 209 0.68
43 57 0.19
44 4 0.01
47 2 0.01
48 31 0.10
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.22
Consensus pattern (42 bp):
CATCCAAGCACCAAGGTGTCGATGCTGCTCGAGGCTCCCGCA
Found at i:76745245 original size:85 final size:84
Alignment explanation
Indices: 76745137--76745331 Score: 212
Period size: 85 Copynumber: 2.3 Consensus size: 84
76745127 GTACTACTCA
* *** * * * *
76745137 AGGCTCCCACACATCTAAGCACCAAGGCGTGGATGCTGCTCT-AAGCTCTCGCGCTTCCAACGTC
1 AGGCT-CCACACATCCAAGCACCAAGGCGCCAATGCTG-TCTGAAGCTCCCACACTACCAACGTC
* *
76745201 CTAGGTTGTCGATGGTGTCCG
64 CTAGGTTGCCGATAGTGTCCG
* * * *
76745222 AGGCTCTCACACATCCAAGCACCAAGGTGCCAATGGTGTCTGAGGCTCCCACACTACCAATGTCC
1 AGGCTC-CACACATCCAAGCACCAAGGCGCCAATGCTGTCTGAAGCTCCCACACTACCAACGTCC
76745287 TAGGTTGCCGATAGTGTCCG
65 TAGGTTGCCGATAGTGTCCG
*
76745307 AGGCTCCAGCACATCCAAGAACCAA
1 AGGCTCCA-CACATCCAAGCACCAA
76745332 AGTACCGATG
Statistics
Matches: 92, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
84 6 0.07
85 86 0.93
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.21
Consensus pattern (84 bp):
AGGCTCCACACATCCAAGCACCAAGGCGCCAATGCTGTCTGAAGCTCCCACACTACCAACGTCCT
AGGTTGCCGATAGTGTCCG
Found at i:76745267 original size:42 final size:41
Alignment explanation
Indices: 76745203--76745331 Score: 118
Period size: 43 Copynumber: 3.0 Consensus size: 41
76745193 CCAACGTCCT
* *
76745203 AGGTTGTCGATGGTGTCCGAGGCTCTCACACATCCAAGCACCA
1 AGGTTGCCAATGGTGTCCGAGGCTC-CACACATCCAAG-ACCA
* * *
76745246 AGG-TGCCAATGGTGTCTGAGGCTCC-CACACTACCAATGTCCT
1 AGGTTGCCAATGGTGTCCGAGGCTCCACACA-T-CCAA-GACCA
* *
76745288 AGGTTGCCGATAGTGTCCGAGGCTCCAGCACATCCAAGAACCA
1 AGGTTGCCAATGGTGTCCGAGGCTCCA-CACATCCAAG-ACCA
76745331 A
1 A
76745332 AGTACCGATG
Statistics
Matches: 69, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
40 4 0.06
41 2 0.03
42 28 0.41
43 30 0.43
44 1 0.01
45 4 0.06
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (41 bp):
AGGTTGCCAATGGTGTCCGAGGCTCCACACATCCAAGACCA
Found at i:76745269 original size:211 final size:213
Alignment explanation
Indices: 76744805--76745271 Score: 528
Period size: 211 Copynumber: 2.2 Consensus size: 213
76744795 GTGTCCCGTT
* *
76744805 CATCCAAGCACCAAGGTGCTGATGCTGCTCGAGGCTCCTGCACATCCAAGCACCAAGTTGTCGAT
1 CATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGTTGTCGAT
* * * * * ** * *
76744870 GCTGCTCGACGCTCTCGCACATCTAAGCACCAAAGTGCTGGTGTTGGTGCTGTTCGAGGCTACCG
66 GCTGCTCGACGCTCCCGCACATCCAACCACCAAA--G--GGTGTCGGTACTACTCAAGGCTACCA
* * * *
76744935 TACATCCAAGCACCAAGGTGTTGATGCTGCTCGAGGCTCCCGCACATCCAACGTCCTAGATTATC
127 CACATCCAAGCACCAAGGCGTGGATGCTGCTCGAAGCTCCCGCACATCCAACGTCCTAGATTATC
** *
76745000 GATGGTGTCTTAGACTCTCAGA
192 GATGGTGTCCGAGACTCTCACA
* * * *
76745022 CATCTAAGCACCAAGGTACCGGTGCTGCTCGAGGCTCCCGCACATCTAAGCACCAA-TGTGTCGA
1 CATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGT-TGTCGA
* * * *
76745086 TGCTGCTCGAGGCTCCCGTACATCCAACCA-CTAA-GGTGTCGGTACTACTCAAGGCTCCCACAC
65 TGCTGCTCGACGCTCCCGCACATCCAACCACCAAAGGGTGTCGGTACTACTCAAGGCTACCACAC
* * * * * * *
76745149 ATCTAAGCACCAAGGCGTGGATGCTGCTCTAAGCTCTCGCGCTTCCAACGTCCTAGGTTGTCGAT
130 ATCCAAGCACCAAGGCGTGGATGCTGCTCGAAGCTCCCGCACATCCAACGTCCTAGATTATCGAT
*
76745214 GGTGTCCGAGGCTCTCACA
195 GGTGTCCGAGACTCTCACA
* *
76745233 CATCCAAGCACCAAGGTGCCAATGGTG-TCTGAGGCTCCC
1 CATCCAAGCACCAAGGTGCCGATGCTGCTC-GAGGCTCCC
76745272 ACACTACCAA
Statistics
Matches: 209, Mismatches: 39, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
210 2 0.01
211 122 0.58
216 4 0.02
217 81 0.39
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.22
Consensus pattern (213 bp):
CATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGTTGTCGAT
GCTGCTCGACGCTCCCGCACATCCAACCACCAAAGGGTGTCGGTACTACTCAAGGCTACCACACA
TCCAAGCACCAAGGCGTGGATGCTGCTCGAAGCTCCCGCACATCCAACGTCCTAGATTATCGATG
GTGTCCGAGACTCTCACA
Found at i:76745311 original size:43 final size:42
Alignment explanation
Indices: 76745192--76745325 Score: 139
Period size: 42 Copynumber: 3.1 Consensus size: 42
76745182 CTCTCGCGCT
* *
76745192 TCCAACGTCCTAGGTTGTCGATGGTGTCCGAGGCTCTCACACA
1 TCCAA-GTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCACACA
* * * *
76745235 TCCAAGCACCAAGG-TGCCAATGGTGTCTGAGGCTCCCACAC-
1 TCCAAG-TCCTAGGTTGCCGATGGTGTCCGAGGCTCCCACACA
*
76745276 TACCAATGTCCTAGGTTGCCGATAGTGTCCGAGGCT-CCAGCACA
1 T-CCAA-GTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCA-CACA
76745320 TCCAAG
1 TCCAAG
76745326 AACCAAAGTA
Statistics
Matches: 74, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
41 1 0.01
42 37 0.50
43 35 0.47
44 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (42 bp):
TCCAAGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCACACA
Found at i:76745357 original size:85 final size:85
Alignment explanation
Indices: 76745193--76745360 Score: 214
Period size: 85 Copynumber: 2.0 Consensus size: 85
76745183 TCTCGCGCTT
* * * * * *
76745193 CCAACGTCCTAGGTTGTCGATGGTGTCCGAGGCTCTCACACATCCAAGCACCAAGGTGCCAATGG
1 CCAACGTCCTAGGTTGCCGATAGTGTCCGAGGCTCTCACACATCCAAGAACCAAAGTACCAATGC
*
76745258 TGTCTGAGGCTCCCACACTA
66 TGCCTGAGGCTCCCACACTA
* *
76745278 CCAATGTCCTAGGTTGCCGATAGTGTCCGAGGCTC-CAGCACATCCAAGAACCAAAGTACCGATG
1 CCAACGTCCTAGGTTGCCGATAGTGTCCGAGGCTCTCA-CACATCCAAGAACCAAAGTACCAATG
*
76745342 CTGCCT-AGTGTTCCCACAC
65 CTGCCTGAG-GCTCCCACAC
76745361 CATAAGATGG
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
84 4 0.06
85 67 0.94
ACGTcount: A:0.24, C:0.32, G:0.23, T:0.21
Consensus pattern (85 bp):
CCAACGTCCTAGGTTGCCGATAGTGTCCGAGGCTCTCACACATCCAAGAACCAAAGTACCAATGC
TGCCTGAGGCTCCCACACTA
Found at i:76748400 original size:37 final size:37
Alignment explanation
Indices: 76748341--76748449 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
76748331 AGCTCAGACG
* *
76748341 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
76748378 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76748415 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
76748450 ATACATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:76748561 original size:48 final size:48
Alignment explanation
Indices: 76748503--76749255 Score: 1281
Period size: 48 Copynumber: 15.7 Consensus size: 48
76748493 ATTCACATTA
* * * *
76748503 GCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
76748551 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
76748599 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
* * * * *
76748647 GTTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
76748695 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
76748743 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
76748791 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
*
76748839 GCATTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
* * * *
76748887 GCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
76748935 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
* *
76748983 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
*
76749031 GCTTTACCACATATACATATCACACATATATTTCACATTATCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
* * * * *
76749079 GCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCA
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
76749127 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
76749175 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
* * *
76749223 GATTTACCACATATACATATCTCATATATATTT
1 GCTTTACCACATATACATATCACACATATATTT
76749256 ATCTTGTACA
Statistics
Matches: 662, Mismatches: 43, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 662 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
Found at i:76752562 original size:40 final size:40
Alignment explanation
Indices: 76752518--76752869 Score: 562
Period size: 40 Copynumber: 8.8 Consensus size: 40
76752508 CCAGCATGAT
* * *
76752518 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** * *
76752558 TGCTCTTCGGGGTTTAGCCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
76752598 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
76752638 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
76752678 TGCTCCTCGGGACTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
76752718 TGCTCCTCGGGACTTAACCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
76752758 TGCTCCTT-GGGACTTAACCCGGATATATCACTAGCACGAA
1 TGCT-CTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
76752798 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
76752838 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
76752870 CTCAATTCTC
Statistics
Matches: 291, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 3 0.01
40 286 0.98
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:76754182 original size:37 final size:37
Alignment explanation
Indices: 76754132--76754244 Score: 190
Period size: 37 Copynumber: 3.1 Consensus size: 37
76754122 CTTTAGCTCA
* * *
76754132 GACAAAATCTCCACACGAAGTTATTGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
76754169 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
76754206 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
76754243 GA
1 GA
76754245 ATACATTTCC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:76754360 original size:48 final size:48
Alignment explanation
Indices: 76754289--76755009 Score: 1264
Period size: 48 Copynumber: 15.0 Consensus size: 48
76754279 TGTTACAACA
* * * *
76754289 TTCACATTAGCCATTCGACTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
76754337 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
76754385 TTCACATTAGCCATTCGACTTTACCACATATACATATCACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
76754433 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
76754481 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
76754529 TTCACATTTGGCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
76754577 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
76754625 TTCACATTAGCCATTCGGCTTTACC-CATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
76754672 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
76754720 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
76754768 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
76754816 TTCACATTAGCCATTCGGCTTTACCACATATAGATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
76754864 TTCACATCAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
76754912 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
76754960 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
76755008 TT
1 TT
76755010 ATCTTGTACA
Statistics
Matches: 640, Mismatches: 32, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
47 47 0.07
48 593 0.93
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:76761317 original size:40 final size:40
Alignment explanation
Indices: 76761260--76761364 Score: 131
Period size: 40 Copynumber: 2.6 Consensus size: 40
76761250 ATTGAATGAT
* * * *
76761260 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACTAC
* * * *
76761300 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACTAC
76761340 ATCCGGGCTAAGA-CCGAAGGCATTT
1 ATCCGGGCTAAGACCCGAAGGCATTT
76761365 GTGCAAATTG
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 11 0.20
40 44 0.80
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACTAC
Found at i:76769417 original size:40 final size:40
Alignment explanation
Indices: 76769309--76769418 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
76769299 ATTGAATGAT
* * * * *
76769309 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
76769349 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
76769389 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
76769419 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:76769433 original size:40 final size:39
Alignment explanation
Indices: 76769309--76769458 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
76769299 ATTGAATGAT
* * * * * * *
76769309 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
76769349 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
76769389 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
76769429 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
76769459 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:76774216 original size:80 final size:80
Alignment explanation
Indices: 76774077--76774296 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 80
76774067 CCGAATCACG
* * * * * * * **
76774077 TGCCTTCGGGAT-TTA-ACCGGATATAACCACAAGCACAATTGCCTTCGGGCCTTAACCCGGATT
1 TGCCTTCGGG-TCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGAAA
*** *
76774140 TGGTAACTTGCA-CAA
65 TAACAACTCGCATCAA
* * *
76774155 TTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCATGAATGCCTTCGGGTCTTAGCCCGGAA
1 -TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGGAA
*
76774219 ATAACAACTCGCATGAA
64 ATAACAACTCGCATCAA
76774236 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
76774297 GTATAATTCA
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 14 0.12
80 100 0.85
81 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGAAAT
AACAACTCGCATCAA
Found at i:76774303 original size:40 final size:40
Alignment explanation
Indices: 76774156--76774302 Score: 233
Period size: 40 Copynumber: 3.7 Consensus size: 40
76774146 CTTGCACAAT
76774156 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCATGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCATGAA
*
76774196 TGCCTTCGGGTCTTAGCCCGGAAATAACAACTCGCATGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCATGAA
* *
76774236 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCATGAA
* *
76774276 TGCCTTCGGGACTTAGCCCGGGTATAA
1 TGCCTTCGGGTCTTAGCCCGGATATAA
76774303 TTCAAATGCT
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
40 99 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCATGAA
Found at i:76786224 original size:40 final size:40
Alignment explanation
Indices: 76786180--76786398 Score: 296
Period size: 41 Copynumber: 5.4 Consensus size: 40
76786170 CGTTTTACCA
* * ** *
76786180 AAAAACGCCACTAAAAACAGAGCAATAGCGATG-TTTTAGTA
1 AAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTT-G-G
* * *
76786221 AAAAATGCCGCAAAAAATAGAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGG
76786261 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGG
*
76786302 AAAAACGCCGCTAAAACCAGAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGG
*
76786342 AAAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTGG
1 AAAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGG
*
76786383 TAAAACGCCGCTAAAA
1 AAAAACGCCGCTAAAA
76786399 GTCATATAAC
Statistics
Matches: 160, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
40 54 0.34
41 102 0.64
42 4 0.03
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (40 bp):
AAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGG
Found at i:76786275 original size:81 final size:80
Alignment explanation
Indices: 76786180--76786398 Score: 260
Period size: 81 Copynumber: 2.7 Consensus size: 80
76786170 CGTTTTACCA
* * * *
76786180 AAAAACGCCACTAAAAACAGAGCAATAGCGATG-TTTTAGTAAAAAATGCCGCAAAAAATAGAGC
1 AAAAACGCCGCTAAAAACAGAGCAATAGCGACGCTTTT-G-AAAAAACGCCGCAAAAAACAGAGC
76786244 ATTAGCGGCGCTTTTGG
64 ATTAGCGGCGCTTTTGG
* * * * *
76786261 AAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAACCAGAGCA
1 AAAAACGCCGCTAAAAA-CAGAGCAATAGCGACGCTTTTGAAAAAACGCCGCAAAAAACAGAGCA
76786326 TTAGCGGCGCTTTTGG
65 TTAGCGGCGCTTTTGG
* * * ** *
76786342 AAAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
1 AAAAACGCCGCTAAAAA-CAGAGCAATAGCGACGCTTTTGAAAAAACGCCGCAAAAA
76786399 GTCATATAAC
Statistics
Matches: 125, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
81 107 0.86
82 14 0.11
83 4 0.03
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (80 bp):
AAAAACGCCGCTAAAAACAGAGCAATAGCGACGCTTTTGAAAAAACGCCGCAAAAAACAGAGCAT
TAGCGGCGCTTTTGG
Found at i:76786570 original size:7 final size:7
Alignment explanation
Indices: 76786555--76786608 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
76786545 TTAATTATCA
*
76786555 TTATAGT
1 TTATGGT
76786562 TTATGGT
1 TTATGGT
76786569 TTATGGT
1 TTATGGT
* *
76786576 TTAAGAT
1 TTATGGT
*
76786583 ATATGGT
1 TTATGGT
*
76786590 TTAGGGT
1 TTATGGT
*
76786597 TTAAGGT
1 TTATGGT
76786604 TTATG
1 TTATG
76786609 AGTTAACTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:76786587 original size:21 final size:21
Alignment explanation
Indices: 76786563--76786693 Score: 100
Period size: 21 Copynumber: 5.9 Consensus size: 21
76786553 CATTATAGTT
*
76786563 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* *
76786584 TATGGTTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
** *
76786605 TATGAGTTAACTATAGTTTAATATA
1 TATG-GTT---TAGGGTTTAAGATA
* *
76786630 TATGGTTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
**
76786651 TATGAGTTAACTATAGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
76786676 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
76786694 GTTTAGGAGT
Statistics
Matches: 83, Mismatches: 19, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
21 44 0.53
22 6 0.07
24 6 0.07
25 27 0.33
ACGTcount: A:0.29, C:0.02, G:0.24, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:76786631 original size:46 final size:46
Alignment explanation
Indices: 76786574--76786709 Score: 254
Period size: 46 Copynumber: 3.0 Consensus size: 46
76786564 ATGGTTTATG
76786574 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
*
76786620 GTTTAATATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
*
76786666 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
1 GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTA
76786710 GTATTTGAAG
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 87 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.43
Consensus pattern (46 bp):
GTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATA
Found at i:76786633 original size:25 final size:25
Alignment explanation
Indices: 76786595--76786679 Score: 79
Period size: 25 Copynumber: 3.6 Consensus size: 25
76786585 ATGGTTTAGG
* *
76786595 GTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGAGTTAACTATA
* **
76786620 GTTTAATATATATG-GTT---TAGG
1 GTTTAAGATATATGAGTTAACTATA
* *
76786641 GTTTAAGGTTTATGAGTTAACTATA
1 GTTTAAGATATATGAGTTAACTATA
76786666 GTTTAAGATATATG
1 GTTTAAGATATATG
76786680 GTTTAGGGTT
Statistics
Matches: 44, Mismatches: 12, Indels: 8
0.69 0.19 0.12
Matches are distributed among these distances:
21 13 0.30
22 3 0.07
24 3 0.07
25 25 0.57
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (25 bp):
GTTTAAGATATATGAGTTAACTATA
Found at i:76786765 original size:7 final size:7
Alignment explanation
Indices: 76786736--76786861 Score: 105
Period size: 7 Copynumber: 18.1 Consensus size: 7
76786726 GATGAATTAT
76786736 GGGTTTA
1 GGGTTTA
*
76786743 GGGATTA
1 GGGTTTA
* *
76786750 TGATTTA
1 GGGTTTA
76786757 GGGTTTA
1 GGGTTTA
76786764 GGG-TTA
1 GGGTTTA
76786770 GGG-TT-
1 GGGTTTA
76786775 GGAGTTTA
1 GG-GTTTA
* *
76786783 AGGTGTAA
1 GGGT-TTA
*
76786791 GGGTTTG
1 GGGTTTA
*
76786798 GGGTTAA
1 GGGTTTA
*
76786805 GGGTTAA
1 GGGTTTA
76786812 GGGTTTA
1 GGGTTTA
*
76786819 GAGTTTA
1 GGGTTTA
*
76786826 GTGTTTA
1 GGGTTTA
*
76786833 GTGTTTA
1 GGGTTTA
76786840 GGGTTTA
1 GGGTTTA
76786847 GGGTTTA
1 GGGTTTA
*
76786854 AGGTTTA
1 GGGTTTA
76786861 G
1 G
76786862 TGGCATTTTT
Statistics
Matches: 96, Mismatches: 19, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
5 2 0.02
6 9 0.09
7 79 0.82
8 6 0.06
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (7 bp):
GGGTTTA
Found at i:76787154 original size:14 final size:14
Alignment explanation
Indices: 76787131--76787175 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
76787121 TTAATTATCA
76787131 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
76787145 TTAT-GATTTAGGGT
1 TTATAG-TTTAGGGT
*
76787159 ATATAGTTTAGGGT
1 TTATAGTTTAGGGT
76787173 TTA
1 TTA
76787176 AGGTGTAGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 25 0.93
15 1 0.04
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:76787217 original size:29 final size:29
Alignment explanation
Indices: 76787185--76787243 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
76787175 AAGGTGTAGG
76787185 AATTACTAATTTACGGGTTACAATTATGT
1 AATTACTAATTTACGGGTTACAATTATGT
76787214 AATTACTAATTTACGGGTTACAATTATGT
1 AATTACTAATTTACGGGTTACAATTATGT
76787243 A
1 A
76787244 GTACTTTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.41
Consensus pattern (29 bp):
AATTACTAATTTACGGGTTACAATTATGT
Found at i:76792214 original size:24 final size:24
Alignment explanation
Indices: 76792187--76792254 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
76792177 ATTATTATTG
* *
76792187 AAATATTCTTGTCCGTTTTATCAT
1 AAATATTATTGTCCGTTTTATCAC
*
76792211 AAATATTATTCTCCGTTTTATCAC
1 AAATATTATTGTCCGTTTTATCAC
*
76792235 AAATATTATCGTCCGTTTTA
1 AAATATTATTGTCCGTTTTA
76792255 CCGTTTAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.47
Consensus pattern (24 bp):
AAATATTATTGTCCGTTTTATCAC
Found at i:76792587 original size:9 final size:9
Alignment explanation
Indices: 76792575--76792695 Score: 118
Period size: 9 Copynumber: 13.6 Consensus size: 9
76792565 TATTTGATAT
*
76792575 CATAATTTA
1 CATAACTTA
76792584 CATAACTTA
1 CATAACTTA
* *
76792593 TATAACATA
1 CATAACTTA
*
76792602 TATAACTTA
1 CATAACTTA
76792611 CATAACTTA
1 CATAACTTA
* *
76792620 TATAACATA
1 CATAACTTA
76792629 CATAACTTA
1 CATAACTTA
* * *
76792638 TATAGCATA
1 CATAACTTA
76792647 CATAACTTA
1 CATAACTTA
*
76792656 TATAACTTA
1 CATAACTTA
* *
76792665 GATAA-ATA
1 CATAACTTA
*
76792673 TATAACTTA
1 CATAACTTA
76792682 CATAACTTA
1 CATAACTTA
76792691 CATAA
1 CATAA
76792696 TACTTAAATA
Statistics
Matches: 90, Mismatches: 21, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
8 6 0.07
9 84 0.93
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.36
Consensus pattern (9 bp):
CATAACTTA
Found at i:76792597 original size:18 final size:18
Alignment explanation
Indices: 76792575--76792695 Score: 145
Period size: 18 Copynumber: 6.8 Consensus size: 18
76792565 TATTTGATAT
* *
76792575 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
76792593 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
76792611 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
* *
76792629 CATAACTTATATAGCATA
1 CATAACTTATATAACTTA
76792647 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* *
76792665 GATAA-ATATATAACTTA
1 CATAACTTATATAACTTA
*
76792682 CATAACTTACATAA
1 CATAACTTATATAA
76792696 TACTTAAATA
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
17 15 0.17
18 72 0.83
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.36
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:76792606 original size:27 final size:27
Alignment explanation
Indices: 76792571--76792695 Score: 135
Period size: 27 Copynumber: 4.6 Consensus size: 27
76792561 AATATATTTG
* *
76792571 ATATCATAATTTACATAACTTATATAAC
1 ATAT-ATAACTTACATAACATATATAAC
*
76792599 ATATATAACTTACATAACTTATATAAC
1 ATATATAACTTACATAACATATATAAC
* * * *
76792626 ATACATAACTTATATAGCATACATAAC
1 ATATATAACTTACATAACATATATAAC
* *
76792653 TTATATAACTTAGATAA-ATATATAAC
1 ATATATAACTTACATAACATATATAAC
* *
76792679 TTACATAACTTACATAA
1 ATATATAACTTACATAA
76792696 TACTTAAATA
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 23 0.27
27 57 0.68
28 4 0.05
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (27 bp):
ATATATAACTTACATAACATATATAAC
Found at i:76798372 original size:21 final size:21
Alignment explanation
Indices: 76798339--76798389 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
76798329 ACAACTTAGA
*
76798339 GCAGAGGCAGCAGAGAGGGAG
1 GCAGAGGCAGCAGAGAGAGAG
* * *
76798360 GCAGCGGCTGCAGCGAGAGAG
1 GCAGAGGCAGCAGAGAGAGAG
76798381 GCAGAGGCA
1 GCAGAGGCA
76798390 CGAGCGATGG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.49, T:0.02
Consensus pattern (21 bp):
GCAGAGGCAGCAGAGAGAGAG
Found at i:76798812 original size:43 final size:43
Alignment explanation
Indices: 76798783--76798903 Score: 215
Period size: 43 Copynumber: 2.8 Consensus size: 43
76798773 GTAAAAAAAG
*
76798783 CGCCGCTAAAAGCCTTGACCTTTAACGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
76798826 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
* *
76798869 TGCCGCTAAAAGCCTTGACCTTTAGCGGCGTTTTT
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTT
76798904 TTTCCAATAA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 75 1.00
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.26
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:76806983 original size:40 final size:40
Alignment explanation
Indices: 76806901--76807104 Score: 324
Period size: 40 Copynumber: 5.2 Consensus size: 40
76806891 AACCCAAGTA
* **
76806901 CCTTCGGGATTTAG-CCGGATATAACAACT--CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76806938 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76806978 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
76807018 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
76807058 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76807098 CCTTCGG
1 CCTTCGG
76807105 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
37 13 0.08
38 13 0.08
40 132 0.84
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76811209 original size:24 final size:24
Alignment explanation
Indices: 76811194--76811261 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
76811184 CTTTATGTCG
76811194 ACCCTTGTCTTTATCTTCATCTCC
1 ACCCTTGTCTTTATCTTCATCTCC
* * *
76811218 ACCCTTGTCTTTGTCTTCGTCTCT
1 ACCCTTGTCTTTATCTTCATCTCC
* * *
76811242 ATCATTGTCTTCATCTTCAT
1 ACCCTTGTCTTTATCTTCAT
76811262 TGTCGTCTTC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.12, C:0.32, G:0.07, T:0.49
Consensus pattern (24 bp):
ACCCTTGTCTTTATCTTCATCTCC
Found at i:76813528 original size:16 final size:16
Alignment explanation
Indices: 76813507--76813541 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
76813497 CTCGACCCAA
76813507 TTTACCTAATTAATTC
1 TTTACCTAATTAATTC
76813523 TTTACCTAATTAATTC
1 TTTACCTAATTAATTC
76813539 TTT
1 TTT
76813542 TAAATCACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (16 bp):
TTTACCTAATTAATTC
Found at i:76815263 original size:23 final size:23
Alignment explanation
Indices: 76815237--76815285 Score: 68
Period size: 21 Copynumber: 2.2 Consensus size: 23
76815227 GCCTGTGTGG
76815237 ATAGGGGACACA-TCCGTGTGACT
1 ATAGGGGACACACT-CGTGTGACT
76815260 ATA--GGACACACTCGTGTGACT
1 ATAGGGGACACACTCGTGTGACT
76815281 ATAGG
1 ATAGG
76815286 ACATGCCTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
21 19 0.83
22 1 0.04
23 3 0.13
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (23 bp):
ATAGGGGACACACTCGTGTGACT
Found at i:76815266 original size:21 final size:21
Alignment explanation
Indices: 76815242--76815288 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 21
76815232 TGTGGATAGG
76815242 GGACACA-TCCGTGTGACTATA
1 GGACACACT-CGTGTGACTATA
76815263 GGACACACTCGTGTGACTATA
1 GGACACACTCGTGTGACTATA
76815284 GGACA
1 GGACA
76815289 TGCCTGTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (21 bp):
GGACACACTCGTGTGACTATA
Found at i:76817062 original size:40 final size:40
Alignment explanation
Indices: 76817007--76817124 Score: 209
Period size: 40 Copynumber: 3.0 Consensus size: 40
76816997 AAAAAAAATA
*
76817007 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGTGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTAT
*
76817047 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTAT
*
76817087 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTT
76817125 GTTACATCCG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.31
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTAT
Found at i:76817150 original size:80 final size:80
Alignment explanation
Indices: 76817007--76817154 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 80
76816997 AAAAAAAATA
* * ** *
76817007 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGTGGGTTATTATAACCGGGTTAAGTCCCGAAGGC
1 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGTGGGTTATTACAACCGAGCCAAATCCCGAAGGC
76817072 ATTCGTGCGGGTTAT
66 ATTCGTGCGGGTTAT
* * * *
76817087 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCT-GGTTGTTACATCCGAGCCAAATTCTGAAGG
1 TATAACCGGGTTAAGTCCCGAAGGCATTTGTG-TGGGTTATTACAACCGAGCCAAATCCCGAAGG
76817151 CATT
65 CATT
76817155 TATGTTTGGA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
80 57 0.98
81 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (80 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTTGTGTGGGTTATTACAACCGAGCCAAATCCCGAAGGC
ATTCGTGCGGGTTAT
Found at i:76820303 original size:40 final size:39
Alignment explanation
Indices: 76820254--76820461 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 39
76820244 TCTTCGGAAT
* *
76820254 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
76820293 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
76820333 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
76820373 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
76820413 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
76820453 TTAGCCCGG
1 TTAGCCCGG
76820462 GTATCATTCA
Statistics
Matches: 147, Mismatches: 18, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
39 3 0.02
40 141 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:76823085 original size:32 final size:32
Alignment explanation
Indices: 76823035--76823097 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
76823025 CACGGCTTAC
* *
76823035 AGCCATCAGTAGTGGTAATTTGATCAGCACAA
1 AGCCATCAATAGTGGTAATATGATCAGCACAA
*
76823067 AGCCATCAATAGCT-GTAATATGATCGGCACA
1 AGCCATCAATAG-TGGTAATATGATCAGCACA
76823098 TAGTCATGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (32 bp):
AGCCATCAATAGTGGTAATATGATCAGCACAA
Found at i:76823151 original size:27 final size:27
Alignment explanation
Indices: 76823083--76823151 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
76823073 CAATAGCTGT
* **
76823083 AATATGATCGGCACATAGTCATGGGTA
1 AATATGATCGGCACAGAGTCATGAATA
* * *
76823110 AATATGGTCGACACAGAGTCATTAATA
1 AATATGATCGGCACAGAGTCATGAATA
*
76823137 AATATGATAGGCACA
1 AATATGATCGGCACA
76823152 TAGCCACAGG
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (27 bp):
AATATGATCGGCACAGAGTCATGAATA
Found at i:76823614 original size:27 final size:27
Alignment explanation
Indices: 76823584--76823663 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
76823574 AAGGGCAAAA
* *
76823584 CAGTCATTTTACCCTACAAGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
*
76823611 CAGTAATTTTACACTATAAGGGTATTT
1 CAGTAATTTTACACTACAAGGGTATTT
* *
76823638 CGGTAATTTTACACTACAATGGTATT
1 CAGTAATTTTACACTACAAGGGTATT
76823664 AACGACCCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (27 bp):
CAGTAATTTTACACTACAAGGGTATTT
Found at i:76826565 original size:26 final size:25
Alignment explanation
Indices: 76826463--76826574 Score: 111
Period size: 25 Copynumber: 4.5 Consensus size: 25
76826453 ATACATGTAT
*
76826463 GCTCATACGAGC-GATAAACGGTAA
1 GCTCATACGAGCTGAGAAACGGTAA
** *
76826487 GCTCATATAAGCTGA-ATAATGGTAA
1 GCTCATACGAGCTGAGA-AACGGTAA
* * * *
76826512 GCTCCTCCGAGTTGAGTAACGGTAA
1 GCTCATACGAGCTGAGAAACGGTAA
*
76826537 GCTCTTACGAGCTGAGAAATCGGTAA
1 GCTCATACGAGCTGAGAAA-CGGTAA
76826563 GCTCATACGAGC
1 GCTCATACGAGC
76826575 AGCGGTGAGT
Statistics
Matches: 69, Mismatches: 15, Indels: 6
0.77 0.17 0.07
Matches are distributed among these distances:
24 11 0.16
25 41 0.59
26 17 0.25
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (25 bp):
GCTCATACGAGCTGAGAAACGGTAA
Found at i:76829317 original size:25 final size:24
Alignment explanation
Indices: 76829269--76829317 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
76829259 ATGTAATTTA
*
76829269 ATTTTAGAAAAATTATTTGATATC
1 ATTTTAGAAAAATTATCTGATATC
76829293 ATTTTAGAAGAAATATATCTG-TATC
1 ATTTTAGAA-AAAT-TATCTGATATC
76829318 TTATTGAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 9 0.41
25 8 0.36
26 5 0.23
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.43
Consensus pattern (24 bp):
ATTTTAGAAAAATTATCTGATATC
Found at i:76830311 original size:14 final size:14
Alignment explanation
Indices: 76830292--76830318 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
76830282 AACGAAGAAA
76830292 CAGCTAAGCAAAAC
1 CAGCTAAGCAAAAC
76830306 CAGCTAAGCAAAA
1 CAGCTAAGCAAAA
76830319 GCTTTTCGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.26, G:0.15, T:0.07
Consensus pattern (14 bp):
CAGCTAAGCAAAAC
Found at i:76831839 original size:80 final size:79
Alignment explanation
Indices: 76831743--76831933 Score: 224
Period size: 83 Copynumber: 2.4 Consensus size: 79
76831733 TGCTGAGCTC
* *
76831743 GTTTTTATTTGTTCAGTAACGGTAGTTTCTGTTCTCCAATTATGCTTGG-TCGTG-CTTCTAAAA
1 GTTTTTATTTGTTCAGTGACGGTAGTTTCTATTCTCCAATTATGCTTGGCT-GTGCCTT-TAAAA
76831806 AGTTGCTGAGATTGTT
64 AGTTGCTGAGATTGTT
* * * * * *
76831822 GTTTTTAATTTGTTCAGTGACAGTAATTGCTTCTATTCTTCATTTGTGCTTGGCTTTGCCTTTAA
1 GTTTTT-ATTTGTTCAGTGACGGT-A--GTTTCTATTCTCCAATTATGCTTGGCTGTGCCTTTAA
76831887 AAAGTTGCTGAGATTGTT
62 AAAGTTGCTGAGATTGTT
*
76831905 GTTTATCATTTGTTCAGTGACGGTAGTTT
1 GTTT-TTATTTGTTCAGTGACGGTAGTTT
76831934 TACAAATCCA
Statistics
Matches: 94, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
79 6 0.06
80 18 0.19
81 1 0.01
82 1 0.01
83 63 0.67
84 5 0.05
ACGTcount: A:0.19, C:0.13, G:0.21, T:0.47
Consensus pattern (79 bp):
GTTTTTATTTGTTCAGTGACGGTAGTTTCTATTCTCCAATTATGCTTGGCTGTGCCTTTAAAAAG
TTGCTGAGATTGTT
Found at i:76832154 original size:3 final size:3
Alignment explanation
Indices: 76832148--76832180 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
76832138 ACAACCACAA
76832148 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG
76832181 TTCTTGCATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:76836043 original size:17 final size:18
Alignment explanation
Indices: 76836015--76836057 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
76836005 GAATTATATA
**
76836015 TTAATATATTTTTTATTT
1 TTAATATATTTTAAATTT
76836033 TTAAT-TATTTTAAATTT
1 TTAATATATTTTAAATTT
76836050 TTAATATA
1 TTAATATA
76836058 AGTATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTAATATATTTTAAATTT
Found at i:76836127 original size:21 final size:22
Alignment explanation
Indices: 76836101--76836158 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
76836091 GTTTTAAGAA
*
76836101 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
76836122 TTGTTTTAATATTTATTTTTA-
1 TTGTTTTAATATTTATTTTTAT
*
76836143 -TGTTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
76836159 GATTTATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.21
20 8 0.24
21 10 0.29
22 9 0.26
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:76836173 original size:25 final size:24
Alignment explanation
Indices: 76836130--76836187 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
76836120 ATTTGTTTTA
*
76836130 ATATTTATTTTTAT-GTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
76836153 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
*
76836179 -TTTTTATTT
1 ATATTTATTT
76836188 AATGAAATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 6 0.20
24 8 0.27
25 8 0.27
26 8 0.27
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.67
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:76836872 original size:17 final size:17
Alignment explanation
Indices: 76836847--76836879 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76836837 AAAATTACAA
76836847 AATAAATTTTAAAATTC
1 AATAAATTTTAAAATTC
*
76836864 AATATATTTTAAAATT
1 AATAAATTTTAAAATT
76836880 TTCAAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (17 bp):
AATAAATTTTAAAATTC
Found at i:76836902 original size:25 final size:25
Alignment explanation
Indices: 76836850--76836901 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
76836840 ATTACAAAAT
76836850 AAATTTTAAAATTCAATATATTTTA
1 AAATTTTAAAATTCAATATATTTTA
*
76836875 AAATTTTCAAAATT-TATAT-TTTTA
1 AAATTTT-AAAATTCAATATATTTTA
76836899 AAA
1 AAA
76836902 AAATCATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 8 0.32
25 11 0.44
26 6 0.24
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (25 bp):
AAATTTTAAAATTCAATATATTTTA
Found at i:76837467 original size:26 final size:26
Alignment explanation
Indices: 76837420--76837469 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
76837410 CACCGAAATA
* ** *
76837420 AAGCAGAAGCAAACTCTCAAGTCAAG
1 AAGCAAAAGCAAACAATAAAGTCAAG
76837446 AAGCAAAAGCAAACAATAAAGTCA
1 AAGCAAAAGCAAACAATAAAGTCA
76837470 CAAGAAAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.54, C:0.20, G:0.16, T:0.10
Consensus pattern (26 bp):
AAGCAAAAGCAAACAATAAAGTCAAG
Found at i:76839685 original size:28 final size:26
Alignment explanation
Indices: 76839647--76839770 Score: 140
Period size: 28 Copynumber: 4.5 Consensus size: 26
76839637 AATTTTTCTC
*
76839647 GCACACTTAGTGCTCAATAACCGATTT
1 GCACACTTAGTGCTCAA-AACCAATTT
*
76839674 CGCACACTTAGTGCTCGGAAATCCAATTT
1 -GCACACTTAGTGCTC--AAAACCAATTT
* *
76839703 GCACACTTAGTGCTTAAAACCAACTT
1 GCACACTTAGTGCTCAAAACCAATTT
* *
76839729 GCACACTTAGTGCTCAATGACCGATTTT
1 GCACACTTAGTGCTCAA-AACC-AATTT
76839757 GCACACTTAGTGCT
1 GCACACTTAGTGCT
76839771 TGGTATCAAA
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
26 25 0.30
27 3 0.04
28 46 0.55
29 7 0.08
30 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCACACTTAGTGCTCAAAACCAATTT
Found at i:76839758 original size:54 final size:55
Alignment explanation
Indices: 76839647--76839771 Score: 150
Period size: 54 Copynumber: 2.3 Consensus size: 55
76839637 AATTTTTCTC
* * *
76839647 GCACACTTAGTGCTCAATAACCGATTTCGCACACTTAGTGCTCGGAAATCCAATTT
1 GCACACTTAGTGCTTAATAACCAACTTCGCACACTTAGTGCTC-GAAATCCAATTT
*
76839703 GCACACTTAGTGCTTAA-AACCAACTT-GCACACTTAGTGCTC--AATGACCGATTTT
1 GCACACTTAGTGCTTAATAACCAACTTCGCACACTTAGTGCTCGAAAT--CC-AATTT
76839757 GCACACTTAGTGCTT
1 GCACACTTAGTGCTT
76839772 GGTATCAAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
51 3 0.05
53 2 0.03
54 34 0.55
55 7 0.11
56 16 0.26
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (55 bp):
GCACACTTAGTGCTTAATAACCAACTTCGCACACTTAGTGCTCGAAATCCAATTT
Found at i:76854533 original size:23 final size:22
Alignment explanation
Indices: 76854502--76854546 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
76854492 AATATAGTCC
* *
76854502 TTTATTTATTTATTTTTTATTCA
1 TTTACTTATCTATTTTTT-TTCA
*
76854525 TTTACTTATCTCTTTTTTTTCA
1 TTTACTTATCTATTTTTTTTCA
76854547 CCATCTTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTACTTATCTATTTTTTTTCA
Found at i:76854851 original size:21 final size:22
Alignment explanation
Indices: 76854811--76854852 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
76854801 TACCTTCATT
* *
76854811 ATTATTGATTTTTTTGTTATCC
1 ATTATTGATTATTTTATTATCC
76854833 ATTATT-ATTATTTTATTATC
1 ATTATTGATTATTTTATTATC
76854853 ATCTATTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.24, C:0.07, G:0.05, T:0.64
Consensus pattern (22 bp):
ATTATTGATTATTTTATTATCC
Found at i:76857335 original size:24 final size:24
Alignment explanation
Indices: 76857308--76857354 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
76857298 AAGGCTAGAA
* *
76857308 CAACTCCAAAAAGAAATGCAAGAG
1 CAACTACAAAAACAAATGCAAGAG
* *
76857332 CAACTACATACACAAATGCAAGA
1 CAACTACAAAAACAAATGCAAGA
76857355 ACAATTGGCC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.53, C:0.23, G:0.13, T:0.11
Consensus pattern (24 bp):
CAACTACAAAAACAAATGCAAGAG
Found at i:76860603 original size:53 final size:53
Alignment explanation
Indices: 76860523--76860623 Score: 184
Period size: 53 Copynumber: 1.9 Consensus size: 53
76860513 ACTCCAAATC
*
76860523 AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTGTTCATTTCAAGTT
1 AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAGTT
*
76860576 AATTTCCTTCTTATTACATTTGCTATCTTTGATTAATTTATTCATTTC
1 AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTC
76860624 GAGCTATGCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (53 bp):
AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAGTT
Found at i:76861097 original size:46 final size:46
Alignment explanation
Indices: 76861038--76861171 Score: 196
Period size: 46 Copynumber: 2.9 Consensus size: 46
76861028 AAAGAAAGCT
* * * *
76861038 CAAATCCTGTACCCCTAAGCTGTAGTGGGATGGATTGAAGAAGATA
1 CAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGAAGATA
* *
76861084 CAAATCCTATACCCCTGAGTTGCAGTGGGATTGATTGAAGATGATA
1 CAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGAAGATA
* *
76861130 CAAATCCTATACCCTTGAGTTGCAGTGGGATGGATGGAAGAA
1 CAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGAA
76861172 ACCAAATTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (46 bp):
CAAATCCTATACCCCTGAGTTGCAGTGGGATGGATTGAAGAAGATA
Found at i:76862582 original size:2 final size:2
Alignment explanation
Indices: 76862575--76862599 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
76862565 TCGATCGGAG
76862575 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
76862600 GAGTACGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76862724 original size:29 final size:29
Alignment explanation
Indices: 76862692--76862764 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
76862682 CTTCGAGCTC
*
76862692 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
76862721 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
76862750 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
76862765 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:76870625 original size:29 final size:29
Alignment explanation
Indices: 76870591--76870663 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
76870581 CTTCGAGCTC
*
76870591 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
76870620 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
76870649 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
76870664 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:76872384 original size:14 final size:15
Alignment explanation
Indices: 76872355--76872384 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
76872345 CAAAATTTAG
76872355 ACATGATACTTTCAC
1 ACATGATACTTTCAC
76872370 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
76872384 A
1 A
76872385 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:76877544 original size:40 final size:40
Alignment explanation
Indices: 76877495--76877741 Score: 313
Period size: 40 Copynumber: 6.2 Consensus size: 40
76877485 TCTTCGGAAT
* *
76877495 TTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAA-TGCCTTCGGGTC
* * *** * *
76877534 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
76877574 TTAGCCCGGATATAA-AACTAGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
*
76877613 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
*
76877653 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
* ** *
76877693 TTAGCCCGGATATAGTC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATA-ACAACTAGCACGAATGCCTTCGGGTC
76877733 TTAGCCCGG
1 TTAGCCCGG
76877742 GTATCATTCT
Statistics
Matches: 184, Mismatches: 20, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
39 40 0.22
40 141 0.77
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACGAATGCCTTCGGGTC
Found at i:76880857 original size:71 final size:71
Alignment explanation
Indices: 76880771--76880934 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76880761 CGATTTGTCT
76880771 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76880836 CTTTCA
66 CTTTCA
76880842 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76880907 CTTTCA
66 CTTTCA
76880913 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76880935 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76880972 original size:71 final size:70
Alignment explanation
Indices: 76880771--76880968 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
76880761 CGATTTGTCT
* * * *
76880771 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76880836 CTTTCA
65 CTTTCA
* * * *
76880842 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76880907 CTTTCA
65 CTTTCA
* *
76880913 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
76880969 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76888436 original size:71 final size:71
Alignment explanation
Indices: 76888350--76888513 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
76888340 CGATTTGTCT
76888350 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76888415 CTTTCA
66 CTTTCA
76888421 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
76888486 CTTTCA
66 CTTTCA
76888492 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
76888514 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:76888551 original size:71 final size:70
Alignment explanation
Indices: 76888350--76888547 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
76888340 CGATTTGTCT
* * * *
76888350 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76888415 CTTTCA
65 CTTTCA
* * * *
76888421 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
76888486 CTTTCA
65 CTTTCA
* *
76888492 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
76888548 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:76891399 original size:17 final size:17
Alignment explanation
Indices: 76891377--76891410 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76891367 AATATAGTCC
* *
76891377 TTTATTTATTTATTTAT
1 TTTATTCATTTACTTAT
76891394 TTTATTCATTTACTTAT
1 TTTATTCATTTACTTAT
76891411 CTATTGTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTATTCATTTACTTAT
Found at i:76891808 original size:3 final size:3
Alignment explanation
Indices: 76891800--76891839 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
76891790 TATATTGTTC
*
76891800 TTA TTA TTA CTA TTA TTA TT- TTA TCTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T
76891840 CTTTTATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:76891849 original size:27 final size:27
Alignment explanation
Indices: 76891800--76891855 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
76891790 TATATTGTTC
*
76891800 TTATTATTACTATTATTATTTTATCTA
1 TTATTATTACTATTATTATTTTATATA
* *
76891827 TTATTATTATTATCTTTTA-TTTATATA
1 TTATTATTACTAT-TATTATTTTATATA
76891854 TT
1 TT
76891856 TCACTACAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (27 bp):
TTATTATTACTATTATTATTTTATATA
Found at i:76891855 original size:21 final size:21
Alignment explanation
Indices: 76891800--76891839 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76891790 TATATTGTTC
*
76891800 TTAT-TATTACTATTATTATT
1 TTATCTATTATTATTATTATT
76891820 TTATCTATTATTATTATTAT
1 TTATCTATTATTATTATTAT
76891840 CTTTTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATCTATTATTATTATTATT
Found at i:76891855 original size:24 final size:24
Alignment explanation
Indices: 76891800--76891855 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
76891790 TATATTGTTC
76891800 TTATTATTACTATTATTATTTTAT
1 TTATTATTACTATTATTATTTTAT
* * *
76891824 CTATTATTATTATTA-TCTTTTAT
1 TTATTATTACTATTATTATTTTAT
76891847 TTATATATT
1 TTAT-TATT
76891856 TCACTACAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 10 0.37
24 17 0.63
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (24 bp):
TTATTATTACTATTATTATTTTAT
Found at i:76892249 original size:19 final size:17
Alignment explanation
Indices: 76892216--76892251 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
76892206 TGATATTATT
76892216 CAAAAAAGGAAGGTTTC
1 CAAAAAAGGAAGGTTTC
76892233 CAAAATAAGGCAAGGTTTC
1 CAAAA-AAGG-AAGGTTTC
76892252 GAACTTTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 4 0.24
19 8 0.47
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.19
Consensus pattern (17 bp):
CAAAAAAGGAAGGTTTC
Found at i:76895235 original size:27 final size:27
Alignment explanation
Indices: 76895205--76895291 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
76895195 AGGTTATCCC
*
76895205 TTCATATTTCGCCACAAAGGCTACTCT
1 TTCATATTTCGCCACAAAGGATACTCT
* *
76895232 TTCATATTTTGCAACAAAGGATACTCT
1 TTCATATTTCGCCACAAAGGATACTCT
* * * *
76895259 TACATATTGCACCAC-AAGGAGTTC-CT
1 TTCATATTTCGCCACAAAGGA-TACTCT
76895285 TTCATAT
1 TTCATAT
76895292 CGCACTACAA
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
26 13 0.27
27 36 0.73
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.34
Consensus pattern (27 bp):
TTCATATTTCGCCACAAAGGATACTCT
Found at i:76895290 original size:26 final size:27
Alignment explanation
Indices: 76895261--76895339 Score: 70
Period size: 27 Copynumber: 3.0 Consensus size: 27
76895251 GATACTCTTA
*
76895261 CATATTGCACCACAAGGA-GTTCCTTT
1 CATATTGCACCACAAAGACGTTCCTTT
* * * *
76895287 CATATCGCACTACAAATACGTTCTTTT
1 CATATTGCACCACAAAGACGTTCCTTT
* ** *
76895314 CATATTACGTCACAAAGACATTCCTT
1 CATATTGCACCACAAAGACGTTCCTT
76895340 CAAGGTTTGC
Statistics
Matches: 39, Mismatches: 13, Indels: 1
0.74 0.25 0.02
Matches are distributed among these distances:
26 14 0.36
27 25 0.64
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.33
Consensus pattern (27 bp):
CATATTGCACCACAAAGACGTTCCTTT
Found at i:76897412 original size:26 final size:26
Alignment explanation
Indices: 76897383--76897442 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
76897373 TCCCTTTGAA
* * *
76897383 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
76897409 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
76897437 ACATTC
1 TCATTC
76897443 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:76897428 original size:28 final size:28
Alignment explanation
Indices: 76897397--76897459 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
76897387 TCGATATTTT
*
76897397 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGACATTCTCAATATCTC
*
76897425 GCACACTAAGTGACATTCTCAATATTTC
1 GCACACTAAGTGACATTCTCAATATCTC
*
76897453 GTACACT
1 GCACACT
76897460 GAGTACCTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGACATTCTCAATATCTC
Found at i:76899643 original size:40 final size:40
Alignment explanation
Indices: 76899594--76899801 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
76899584 TCTTCGGAAT
* * *
76899594 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * * ** * * *
76899633 CTAACCCGGATTTGGTAACTTGTACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
76899673 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* * *
76899713 TTAGCCTGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
76899753 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
76899793 TTAGCCCGG
1 TTAGCCCGG
76899802 GTATTATTCA
Statistics
Matches: 139, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 2 0.01
40 136 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:76904799 original size:40 final size:40
Alignment explanation
Indices: 76904650--76904801 Score: 184
Period size: 40 Copynumber: 3.8 Consensus size: 40
76904640 TCGAATGATG
* * ** *
76904650 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTCCCAAA
76904690 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
76904730 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
* **
76904770 TCTGGGTTAAG-TCCCGAAGGCATTTGTGCGAG
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG
76904802 CTATTATAAC
Statistics
Matches: 101, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 92 0.91
41 8 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
Found at i:76908387 original size:14 final size:15
Alignment explanation
Indices: 76908363--76908395 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
76908353 AACAACCGAT
76908363 CTCGCACACACAGTG
1 CTCGCACACACAGTG
76908378 CTCG-ACACACAGTG
1 CTCGCACACACAGTG
76908392 CTCG
1 CTCG
76908396 GTTACGGGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.24, C:0.39, G:0.21, T:0.15
Consensus pattern (15 bp):
CTCGCACACACAGTG
Found at i:76908415 original size:28 final size:28
Alignment explanation
Indices: 76908378--76908534 Score: 120
Period size: 28 Copynumber: 5.6 Consensus size: 28
76908368 ACACACAGTG
*
76908378 CTCG-ACACACAGTGCTCGGTTACGGGA
1 CTCGCACACACAGTGCTCGGTTACGGAA
**** *
76908405 CTCGCACACACAGTGCCTCAACAAC-CAA
1 CTCGCACACACAGTG-CTCGGTTACGGAA
*
76908433 TCTCGCACACACAGTGCTTGGTTACGGAA
1 -CTCGCACACACAGTGCTCGGTTACGGAA
* * **** * *
76908462 CTCGCACGCATAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTG-CTCGGTTACGGAA
76908491 CTCGCACACACAGTGCTCGGTTACGGAA
1 CTCGCACACACAGTGCTCGGTTACGGAA
* *
76908519 CTCACACACATAGTGC
1 CTCGCACACACAGTGC
76908535 CTATGTTCAC
Statistics
Matches: 94, Mismatches: 31, Indels: 9
0.70 0.23 0.07
Matches are distributed among these distances:
27 4 0.04
28 49 0.52
29 41 0.44
ACGTcount: A:0.27, C:0.34, G:0.20, T:0.18
Consensus pattern (28 bp):
CTCGCACACACAGTGCTCGGTTACGGAA
Found at i:76908427 original size:71 final size:71
Alignment explanation
Indices: 76908311--76908450 Score: 244
Period size: 71 Copynumber: 2.0 Consensus size: 71
76908301 CTGATCTTGC
* * *
76908311 ACACACAGTGCTTGGTTACGGAACTCGCACACATAGTGCCTCAACAACCGATCTCGCACACACAG
1 ACACACAGTGCTCGGTTACGGAACTCGCACACACAGTGCCTCAACAACCAATCTCGCACACACAG
76908376 TGCTCG
66 TGCTCG
*
76908382 ACACACAGTGCTCGGTTACGGGACTCGCACACACAGTGCCTCAACAACCAATCTCGCACACACAG
1 ACACACAGTGCTCGGTTACGGAACTCGCACACACAGTGCCTCAACAACCAATCTCGCACACACAG
76908447 TGCT
66 TGCT
76908451 TGGTTACGGA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 65 1.00
ACGTcount: A:0.29, C:0.35, G:0.19, T:0.17
Consensus pattern (71 bp):
ACACACAGTGCTCGGTTACGGAACTCGCACACACAGTGCCTCAACAACCAATCTCGCACACACAG
TGCTCG
Found at i:76908444 original size:29 final size:29
Alignment explanation
Indices: 76908405--76908506 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
76908395 GGTTACGGGA
76908405 CTCGCACACACAGTGCCTCAACAACCAAT
1 CTCGCACACACAGTGCCTCAACAACCAAT
***** *
76908434 CTCGCACACACAGTG-CTTGGTTACGGAA-
1 CTCGCACACACAGTGCCTCAACAAC-CAAT
* * *
76908462 CTCGCACGCATAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCCTCAACAACCAAT
76908491 CTCGCACACACAGTGC
1 CTCGCACACACAGTGC
76908507 TCGGTTACGG
Statistics
Matches: 53, Mismatches: 17, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
28 18 0.34
29 35 0.66
ACGTcount: A:0.28, C:0.37, G:0.18, T:0.17
Consensus pattern (29 bp):
CTCGCACACACAGTGCCTCAACAACCAAT
Found at i:76908477 original size:57 final size:57
Alignment explanation
Indices: 76908378--76908536 Score: 257
Period size: 57 Copynumber: 2.8 Consensus size: 57
76908368 ACACACAGTG
* *
76908378 CTCG-ACACACAGTGCTCGGTTACGGGACTCGCACACACAGTGCCTCAACAACCAAT
1 CTCGCACACACAGTGCTCGGTTACGGAACTCGCACACATAGTGCCTCAACAACCAAT
* * *
76908434 CTCGCACACACAGTGCTTGGTTACGGAACTCGCACGCATAGTGCCTCAACAACCGAT
1 CTCGCACACACAGTGCTCGGTTACGGAACTCGCACACATAGTGCCTCAACAACCAAT
*
76908491 CTCGCACACACAGTGCTCGGTTACGGAACTCACACACATAGTGCCT
1 CTCGCACACACAGTGCTCGGTTACGGAACTCGCACACATAGTGCCT
76908537 ATGTTCACTT
Statistics
Matches: 94, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
56 4 0.04
57 90 0.96
ACGTcount: A:0.27, C:0.35, G:0.20, T:0.18
Consensus pattern (57 bp):
CTCGCACACACAGTGCTCGGTTACGGAACTCGCACACATAGTGCCTCAACAACCAAT
Done.