Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 255 of 335
Found at i:77368617 original size:54 final size:54
Alignment explanation
Indices: 77368558--77368725 Score: 203
Period size: 54 Copynumber: 3.1 Consensus size: 54
77368548 GGGCAAAATG
* * * * * *
77368558 GTAATTTTACCCCAC-GAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAG-GGGTATTTCGGTAATTCTACCCTATAGGGTTATTTCA
* * * *
77368612 GTAATTCTACCATACAGGGGTATTTTGGCAATTCTACCCTATAGGGTTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGTTATTTCA
* * *
77368666 GTAATTCTGCCCTACAGGGGTATTTCGGTATTTCTACCCTATAGGGTTCTTTCA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGTTATTTCA
77368720 GTAATT
1 GTAATT
77368726 TTGTAAATCG
Statistics
Matches: 96, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
54 95 0.99
55 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGTTATTTCA
Found at i:77368705 original size:27 final size:27
Alignment explanation
Indices: 77368557--77368725 Score: 178
Period size: 27 Copynumber: 6.3 Consensus size: 27
77368547 GGGGCAAAAT
* * *
77368557 GGTAATTTTACCCCAC-GAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
*
77368584 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
77368611 AGTAATTCTACCATACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
77368638 GGCAATTCTACCCTATAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77368665 GGTAATTCTGCCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
77368692 GGTATTTCTACCCTATAGGGTTCTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
77368719 AGTAATT
1 GGTAATT
77368726 TTGTAAATCG
Statistics
Matches: 118, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
27 117 0.99
28 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:77377898 original size:17 final size:17
Alignment explanation
Indices: 77377876--77377913 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
77377866 GGCTGTCGAT
77377876 TTGCGGTAGCAATG-AGC
1 TTGCGGTAGC-ATGAAGC
77377893 TTGCGGTAGCATGAAGC
1 TTGCGGTAGCATGAAGC
77377910 TTGC
1 TTGC
77377914 TACTGCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.21, C:0.18, G:0.34, T:0.26
Consensus pattern (17 bp):
TTGCGGTAGCATGAAGC
Found at i:77378138 original size:14 final size:14
Alignment explanation
Indices: 77378115--77378147 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
77378105 GAATTAGGGC
*
77378115 AATTTTGTAGCTAA
1 AATTTCGTAGCTAA
77378129 AATTTCGTAGCTAA
1 AATTTCGTAGCTAA
77378143 AATTT
1 AATTT
77378148 AGTTAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.42
Consensus pattern (14 bp):
AATTTCGTAGCTAA
Found at i:77378397 original size:6 final size:6
Alignment explanation
Indices: 77378364--77378422 Score: 61
Period size: 6 Copynumber: 10.2 Consensus size: 6
77378354 TGATCTCCGT
* * *
77378364 AATTAA AA-T-A AA-TAA AACTAA CATTAA AATTAA AAATAA AGATTAA
1 AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA AATTAA A-ATTAA
77378410 AATTAA AATTAA A
1 AATTAA AATTAA A
77378423 GAAAATATAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
4 4 0.09
5 4 0.09
6 32 0.71
7 5 0.11
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (6 bp):
AATTAA
Found at i:77378408 original size:19 final size:19
Alignment explanation
Indices: 77378386--77378424 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
77378376 TAAAACTAAC
77378386 ATTAAAATTAAAAATAAAG
1 ATTAAAATTAAAAATAAAG
*
77378405 ATTAAAATTAAAATTAAAG
1 ATTAAAATTAAAAATAAAG
77378424 A
1 A
77378425 AAATATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (19 bp):
ATTAAAATTAAAAATAAAG
Found at i:77378418 original size:25 final size:24
Alignment explanation
Indices: 77378373--77378453 Score: 76
Period size: 24 Copynumber: 3.3 Consensus size: 24
77378363 TAATTAAAAT
* *
77378373 AAATAAAACTAACATTAAAATTAA
1 AAATAAAATTAAAATTAAAATTAA
77378397 AAATAAAGATTAAAATTAAAATTAA
1 AAATAAA-ATTAAAATTAAAATTAA
* * *
77378422 AGAA-AATATAAAAATGAGAAA-TAA
1 A-AATAAAATTAAAATTA-AAATTAA
77378446 AAATAAAA
1 AAATAAAA
77378454 CTAAGATAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
23 2 0.04
24 22 0.47
25 21 0.45
26 2 0.04
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.22
Consensus pattern (24 bp):
AAATAAAATTAAAATTAAAATTAA
Found at i:77384700 original size:20 final size:20
Alignment explanation
Indices: 77384675--77384720 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
77384665 ATTAGGTTTG
77384675 AGTGGTAAGACCCTAGGTCA
1 AGTGGTAAGACCCTAGGTCA
***
77384695 AGTGGTTTTACCCTAGGTCA
1 AGTGGTAAGACCCTAGGTCA
77384715 AGTGGT
1 AGTGGT
77384721 TTTAGAAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (20 bp):
AGTGGTAAGACCCTAGGTCA
Found at i:77384721 original size:20 final size:20
Alignment explanation
Indices: 77384684--77384724 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
77384674 GAGTGGTAAG
77384684 ACCCTAGGTCAAGTGGTTTT
1 ACCCTAGGTCAAGTGGTTTT
77384704 ACCCTAGGTCAAGTGGTTTT
1 ACCCTAGGTCAAGTGGTTTT
77384724 A
1 A
77384725 GAAAGTGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (20 bp):
ACCCTAGGTCAAGTGGTTTT
Found at i:77399791 original size:46 final size:46
Alignment explanation
Indices: 77399731--77399906 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
77399721 TGGTTGAGCA
*
77399731 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
77399777 TCCGAACTCGTTGAGTTGAGCCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* **
77399822 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
77399870 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77399907 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.58
47 28 0.27
48 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:77399887 original size:93 final size:93
Alignment explanation
Indices: 77399728--77399899 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
77399718 GGATGGTTGA
* ***
77399728 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGT
77399793 TGAGCCCGAGTTCGTGAAATGTAACTAG
66 TGAGCCCGAGTTCGTGAAATGTAACTAG
* *
77399821 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGT
**
77399886 TGAGTTCGAGTTCG
66 TGAGCCCGAGTTCG
77399900 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGCCCGAGTTCGTGAAATGTAACTAG
Found at i:77405189 original size:31 final size:31
Alignment explanation
Indices: 77405151--77405214 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
77405141 CCTTTTCATA
*
77405151 TTTCATATTTCATAACACTGGGTCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
77405182 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
77405213 TT
1 TT
77405215 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:77405463 original size:24 final size:24
Alignment explanation
Indices: 77405423--77405503 Score: 78
Period size: 23 Copynumber: 3.4 Consensus size: 24
77405413 CTGGAGGCCT
77405423 AGCCTCTTTTA-ATAACTGGGGC-AA
1 AGCC-CTTTTATA-AACTGGGGCAAA
*
77405447 AGCCCTTTTGATAAACTGGGGCGAA
1 AGCCCTTTT-ATAAACTGGGGCAAA
* * *
77405472 AGCCATTTTA-ATATTGGGGCAAA
1 AGCCCTTTTATAAACTGGGGCAAA
77405495 AGCCCTTTT
1 AGCCCTTTT
77405504 TGCACTTCCT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
23 23 0.47
24 15 0.31
25 11 0.22
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTATAAACTGGGGCAAA
Found at i:77405574 original size:20 final size:20
Alignment explanation
Indices: 77405551--77405597 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
77405541 TTATGAATAC
77405551 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
77405570 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
77405591 ATCATGT
1 ATCATGT
77405598 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:77409380 original size:10 final size:11
Alignment explanation
Indices: 77409365--77409410 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
77409355 ATTTTGATAT
*
77409365 ACATGATTTG-
1 ACATGATATGC
77409375 ACATGATATGC
1 ACATGATATGC
77409386 ACATGATATG-
1 ACATGATATGC
*
77409396 -TATGATATGC
1 ACATGATATGC
77409406 ACATG
1 ACATG
77409411 TTATATTCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.27
10 9 0.30
11 13 0.43
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:77409391 original size:11 final size:10
Alignment explanation
Indices: 77409359--77409410 Score: 54
Period size: 9 Copynumber: 5.2 Consensus size: 10
77409349 CAAGAGATTT
77409359 TGATAT-ACA
1 TGATATGACA
*
77409368 TGATTTGACA
1 TGATATGACA
77409378 TGATATGCACA
1 TGATATG-ACA
*
77409389 TGATATG-TA
1 TGATATGACA
77409398 TGATATGCACA
1 TGATATG-ACA
77409409 TG
1 TG
77409411 TTATATTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
9 13 0.37
10 9 0.26
11 13 0.37
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:77418563 original size:40 final size:40
Alignment explanation
Indices: 77418479--77418663 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
77418469 TCGAATGATG
* * *
77418479 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
77418518 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
77418559 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
77418598 TCC-GAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGA-CTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
77418637 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAGTCCCGAAGGCATTTG
77418664 AATGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
38 1 0.01
39 32 0.26
40 77 0.64
41 11 0.09
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:77418615 original size:79 final size:81
Alignment explanation
Indices: 77418479--77418661 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
77418469 TCGAATGATG
* * *
77418479 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATT
77418543 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* *
77418558 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTCACTAAATCC-GAGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGA-CTAAGAT-CCGAAGGC
77418619 ATTTGTGCGAGTTACTATA
63 ATTTGTGCGAGTTACTATA
* *
77418638 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
77418662 TGAATGAGTA
Statistics
Matches: 91, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
78 3 0.03
79 58 0.64
80 30 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:77418686 original size:79 final size:78
Alignment explanation
Indices: 77418480--77418696 Score: 210
Period size: 79 Copynumber: 2.7 Consensus size: 78
77418470 CGAATGATGT
** * *
77418480 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AATGAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
77418543 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *** *
77418560 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCA-CTAAATCCGAGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGAATGAGT-AGCTATATCCG-GTTAAGT-CCGAAGGCATTT
77418623 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* *
77418639 CCGGGCTATGTCCCGAAGGCATTTGAATGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAATGAGTAGCTATATCCGGTT-AAGTCCGAAGG
77418697 TACGTGATTC
Statistics
Matches: 113, Mismatches: 15, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.60
80 42 0.37
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAATGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:77421885 original size:10 final size:11
Alignment explanation
Indices: 77421870--77421915 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
77421860 ATTTTGATAT
*
77421870 ACATGATTTG-
1 ACATGATATGC
77421880 ACATGATATGC
1 ACATGATATGC
77421891 ACATGATATG-
1 ACATGATATGC
*
77421901 -TATGATATGC
1 ACATGATATGC
77421911 ACATG
1 ACATG
77421916 TTATATTCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 8 0.27
10 9 0.30
11 13 0.43
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:77421896 original size:11 final size:10
Alignment explanation
Indices: 77421864--77421915 Score: 54
Period size: 9 Copynumber: 5.2 Consensus size: 10
77421854 CATGAGATTT
77421864 TGATAT-ACA
1 TGATATGACA
*
77421873 TGATTTGACA
1 TGATATGACA
77421883 TGATATGCACA
1 TGATATG-ACA
*
77421894 TGATATG-TA
1 TGATATGACA
77421903 TGATATGCACA
1 TGATATG-ACA
77421914 TG
1 TG
77421916 TTATATTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
9 13 0.37
10 9 0.26
11 13 0.37
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:77425951 original size:18 final size:18
Alignment explanation
Indices: 77425928--77425964 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
77425918 TTAATTATGT
77425928 AATAAGGCCATTTGGGGA
1 AATAAGGCCATTTGGGGA
77425946 AATAAGGCCATTTGGGGA
1 AATAAGGCCATTTGGGGA
77425964 A
1 A
77425965 TTTTTAACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.11, G:0.32, T:0.22
Consensus pattern (18 bp):
AATAAGGCCATTTGGGGA
Found at i:77430398 original size:37 final size:36
Alignment explanation
Indices: 77430352--77430484 Score: 135
Period size: 31 Copynumber: 3.9 Consensus size: 36
77430342 TTAGTCTTGA
77430352 CATAT-ACTGGGCCGAAGCCTTTCCATAAATCATAAT
1 CATATCACTGGGCCGAAGCCTTT-CATAAATCATAAT
*
77430388 CATATCACTGGGCCGAAGCCTTT--T-CAT-A-AAT
1 CATATCACTGGGCCGAAGCCTTTCATAAATCATAAT
*
77430419 CATATCACTGGGCCGAAGCCTTT--T-CAT-A-AAT
1 CATATCACTGGGCCGAAGCCTTTCATAAATCATAAT
**
77430450 CATATCACTGGGCTAAAGCCTTTTCATAAATCATA
1 CATATCACTGGGCCGAAGCC-TTTCATAAATCATA
77430485 TCACTGGGCC
Statistics
Matches: 86, Mismatches: 4, Indels: 13
0.83 0.04 0.13
Matches are distributed among these distances:
31 52 0.60
32 4 0.05
33 2 0.02
34 2 0.02
35 2 0.02
36 6 0.07
37 18 0.21
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (36 bp):
CATATCACTGGGCCGAAGCCTTTCATAAATCATAAT
Found at i:77430421 original size:31 final size:31
Alignment explanation
Indices: 77430381--77430496 Score: 207
Period size: 31 Copynumber: 3.8 Consensus size: 31
77430371 TTTCCATAAA
77430381 TCAT-AATCATATCACTGGGCCGAAGCCTTT
1 TCATAAATCATATCACTGGGCCGAAGCCTTT
77430411 TCATAAATCATATCACTGGGCCGAAGCCTTT
1 TCATAAATCATATCACTGGGCCGAAGCCTTT
**
77430442 TCATAAATCATATCACTGGGCTAAAGCCTTT
1 TCATAAATCATATCACTGGGCCGAAGCCTTT
77430473 TCATAAATCATATCACTGGGCCGA
1 TCATAAATCATATCACTGGGCCGA
77430497 TGTGACACCC
Statistics
Matches: 81, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 4 0.05
31 77 0.95
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (31 bp):
TCATAAATCATATCACTGGGCCGAAGCCTTT
Found at i:77430436 original size:68 final size:62
Alignment explanation
Indices: 77430352--77430496 Score: 202
Period size: 62 Copynumber: 2.3 Consensus size: 62
77430342 TTAGTCTTGA
*
77430352 CATAT-ACTGGGCCGAAGCCTTTCCATAAATCATAATCATATCACTGGGCCGAAGCCTTTTCATA
1 CATATCACTGGGCCGAAGCCTTT---T-AAT-A-AATCATATCACTGGGCCAAAGCCTTTTCATA
77430416 AAT
60 AAT
* *
77430419 CATATCACTGGGCCGAAGCCTTTTCATAAATCATATCACTGGGCTAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTAATAAATCATATCACTGGGCCAAAGCCTTTTCATAAAT
77430481 CATATCACTGGGCCGA
1 CATATCACTGGGCCGA
77430497 TGTGACACCC
Statistics
Matches: 74, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
62 48 0.65
63 1 0.01
64 2 0.03
65 1 0.01
67 5 0.07
68 17 0.23
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (62 bp):
CATATCACTGGGCCGAAGCCTTTTAATAAATCATATCACTGGGCCAAAGCCTTTTCATAAAT
Found at i:77433082 original size:48 final size:48
Alignment explanation
Indices: 77433012--77433180 Score: 302
Period size: 48 Copynumber: 3.5 Consensus size: 48
77433002 GATAAATACA
**
77433012 TATGAGATATGTATATACGGTAAAGCCGAATGGCTAATGTGAAATAAG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAG
*
77433060 TATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAG
*
77433108 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAG
77433156 TATGAGATATGTATATGTGGTAAAG
1 TATGAGATATGTATATGTGGTAAAG
77433181 GTAAAGCCGA
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 116 1.00
ACGTcount: A:0.38, C:0.06, G:0.27, T:0.30
Consensus pattern (48 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAAG
Found at i:77433124 original size:54 final size:52
Alignment explanation
Indices: 77433030--77433206 Score: 230
Period size: 48 Copynumber: 3.5 Consensus size: 52
77433020 ATGTATATAC
77433030 GGTAAAGCCGAATGGCTAATGTGAAATAAGTATGAGATATG--A--ATATGT
1 GGTAAAGCCGAATGGCTAATGTGAAATAAGTATGAGATATGATATGATATGT
77433078 GGTAAAGCCGAATGGCTAATGTGAAATAAGTATGAGATATG---T-ATATGT
1 GGTAAAGCCGAATGGCTAATGTGAAATAAGTATGAGATATGATATGATATGT
* *
77433126 GGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATG-T-GGT
1 GGTAAAGCCGAATGGCTAATGTGAAATAAGTATGAGATATG-ATATGATATGT
77433177 AAAGGTAAAGCCGAATGGCTAATGTGAAAT
1 ---GGTAAAGCCGAATGGCTAATGTGAAAT
77433207 GTGACATCCC
Statistics
Matches: 118, Mismatches: 2, Indels: 12
0.89 0.02 0.09
Matches are distributed among these distances:
48 87 0.74
51 2 0.02
52 2 0.02
54 27 0.23
ACGTcount: A:0.38, C:0.07, G:0.28, T:0.28
Consensus pattern (52 bp):
GGTAAAGCCGAATGGCTAATGTGAAATAAGTATGAGATATGATATGATATGT
Found at i:77434831 original size:25 final size:25
Alignment explanation
Indices: 77434803--77434879 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
77434793 TGATGAATGT
77434803 GAATGTGCATATATGTGATAAGGCC
1 GAATGTGCATATATGTGATAAGGCC
* * *
77434828 GAATG-GC--CTATGTGATGAATG-T
1 GAATGTGCATATATGTGAT-AAGGCC
** *
77434850 GAACATGCATATATGTGATGAGGCC
1 GAATGTGCATATATGTGATAAGGCC
77434875 GAATG
1 GAATG
77434880 GCCAATGTGA
Statistics
Matches: 36, Mismatches: 11, Indels: 10
0.63 0.19 0.18
Matches are distributed among these distances:
22 11 0.31
23 5 0.14
24 4 0.11
25 16 0.44
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (25 bp):
GAATGTGCATATATGTGATAAGGCC
Found at i:77434843 original size:47 final size:47
Alignment explanation
Indices: 77434790--77435079 Score: 311
Period size: 47 Copynumber: 6.1 Consensus size: 47
77434780 CTAGGATTTT
** *
77434790 ATGTGATGAATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
77434837 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
77434884 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
77434931 ATGTGGTGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * ** * *
77434978 ATGTGAAAT-ATATATG-AGATGTGTATATGTGATAAAGCCGAATGGCTA
1 ATGTG--ATGA-ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
77435026 ATGTGAAAT-ATATGTGTGATATG--TATATGTGATAAAGCCGAATGGCTA
1 ATGTG--ATGA-ATGTG-AACATGCATATATGTGATAAGGCCGAATGGCCA
77435074 ATGTGA
1 ATGTGA
77435080 AATATATGTG
Statistics
Matches: 219, Mismatches: 19, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
46 1 0.00
47 134 0.61
48 74 0.34
49 6 0.03
50 4 0.02
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:77435017 original size:48 final size:48
Alignment explanation
Indices: 77434795--77435128 Score: 301
Period size: 48 Copynumber: 7.0 Consensus size: 48
77434785 ATTTTATGTG
* *
77434795 ATGAATGTGA-ATGTGCATATATGTGATAAGGCCGAATGGCCTATGTG--
1 ATGAATGTGAGA--TGCATATATGTGATAAAGCCGAATGGCCAATGTGAA
* * *
77434842 ATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCAATGTG--
1 ATGAATGTG-AGATGCATATATGTGATAAAGCCGAATGGCCAATGTGAA
* *
77434889 ATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTG--
1 ATGAATGTGAG-ATGCATATATGTGATAAAGCCGAATGGCCAATGTGAA
* * *
77434936 GTGAATATGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGAA
1 ATGAATGTG-AGATGCATATATGTGATAAAGCCGAATGGCCAATGTGAA
* ** *
77434985 AT-ATATATGAGATGTGTATATGTGATAAAGCCGAATGGCTAATGTGAA
1 ATGA-ATGTGAGATGCATATATGTGATAAAGCCGAATGGCCAATGTGAA
* *** *
77435033 AT-ATATGTGTGATATGTATATGTGATAAAGCCGAATGGCTAATGTGAA
1 ATGA-ATGTGAGATGCATATATGTGATAAAGCCGAATGGCCAATGTGAA
* *** * *
77435081 AT-ATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATGA-ATGTGAGATGCATATATGTGATAAAGCCGAATGGCCAATGTGAA
77435129 TGTTGTAACA
Statistics
Matches: 261, Mismatches: 19, Indels: 13
0.89 0.06 0.04
Matches are distributed among these distances:
46 1 0.00
47 123 0.47
48 130 0.50
49 7 0.03
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.29
Consensus pattern (48 bp):
ATGAATGTGAGATGCATATATGTGATAAAGCCGAATGGCCAATGTGAA
Found at i:77435223 original size:37 final size:37
Alignment explanation
Indices: 77435173--77435280 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
77435163 GGAAATATAT
*
77435173 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
77435210 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
77435247 TCCGGGTAAGACCCAATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
77435281 TCGTCTGAGC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:77436792 original size:31 final size:31
Alignment explanation
Indices: 77436757--77436819 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
77436747 GAATGGCTAA
*
77436757 TGTGAAATATGTATGAGATATGTATATGTGG
1 TGTGAAATAAGTATGAGATATGTATATGTGG
77436788 TGTGAAATAAGTATGAGATATGTATATGTGG
1 TGTGAAATAAGTATGAGATATGTATATGTGG
77436819 T
1 T
77436820 AAAGCCGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.38
Consensus pattern (31 bp):
TGTGAAATAAGTATGAGATATGTATATGTGG
Found at i:77436840 original size:48 final size:48
Alignment explanation
Indices: 77436788--77436998 Score: 386
Period size: 48 Copynumber: 4.4 Consensus size: 48
77436778 GTATATGTGG
*
77436788 TGTGAAATAAGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
*
77436836 TGTGAAATAAGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
77436884 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
*
77436932 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAG
1 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
*
77436980 TGTGAAATATGTAGGAGAT
1 TGTGAAATATGTATGAGAT
77436999 GTGTGTATAT
Statistics
Matches: 160, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 160 1.00
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAA
Found at i:77438114 original size:42 final size:42
Alignment explanation
Indices: 77438067--77438158 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
77438057 TGGCCCTTAG
*
77438067 GCCCATTTCAATATCACATGTAATGTCAATGGATGTAAGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTAAGCAA
*
77438109 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTAAGCAA
77438151 GCCCATTT
1 GCCCATTT
77438159 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTAAGCAA
Found at i:77438334 original size:25 final size:25
Alignment explanation
Indices: 77438306--77438375 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
77438296 CTCTTTTAAT
77438306 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
77438331 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
77438356 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
77438376 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:77439215 original size:27 final size:27
Alignment explanation
Indices: 77439185--77439249 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
77439175 GGGTATATTC
77439185 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
77439212 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
77439239 GTCTTTTTACC
1 GTCATTTTACC
77439250 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:77439333 original size:27 final size:27
Alignment explanation
Indices: 77439303--77439400 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
77439293 GTAAATCTAC
77439303 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
77439330 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
*
77439356 AGAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
77439386 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
77439401 TGGTATTTTA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
26 1 0.02
27 33 0.53
28 7 0.11
29 20 0.32
30 1 0.02
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:77439421 original size:27 final size:27
Alignment explanation
Indices: 77439391--77439515 Score: 164
Period size: 27 Copynumber: 4.7 Consensus size: 27
77439381 TTTGTAAATC
77439391 AGGGGTATTTTGGT-ATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* * * *
77439416 TGAGGGTATTTCGATAATTTCACAAACT
1 AG-GGGTATTTTGGTAATTTTACAAACT
* * *
77439444 AGTGGTATTTCGATAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
77439471 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
77439498 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
77439516 CTATCCTACA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
25 1 0.01
26 10 0.11
27 74 0.85
28 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:77439480 original size:54 final size:54
Alignment explanation
Indices: 77439338--77439548 Score: 153
Period size: 54 Copynumber: 3.9 Consensus size: 54
77439328 GTAAACCAAT
* * * * * ***
77439338 GGTATTTCTATAATTTTTAGAAAGTCAAGGGTATTTCTATAATTTTGTAAA-TCAGG
1 GGTATTTCGATAA-TTTTACAAACT-AGGGGTATTTCGATAATTTCACAAACT-AGG
* * * *
77439394 GGTATTTTGGT-ATTTTACAAA-TTGAGGGTATTTCGATAATTTCACAAACTAGT
1 GGTATTTCGATAATTTTACAAACTAG-GGGTATTTCGATAATTTCACAAACTAGG
* * *
77439447 GGTATTTCGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTCGATAATTTTACAAACTAGGGGTATTTCGATAATTTCACAAACTAGG
* * * **
77439501 GGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTC-AGTAATTTCACAA
1 GGTATTTCGATAATTTTA-CAAACTAGGGGTATTTCGA-TAATTTCACAA
77439549 TCAAGGGTAA
Statistics
Matches: 123, Mismatches: 26, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
53 31 0.25
54 78 0.63
55 6 0.05
56 8 0.07
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (54 bp):
GGTATTTCGATAATTTTACAAACTAGGGGTATTTCGATAATTTCACAAACTAGG
Found at i:77439542 original size:81 final size:80
Alignment explanation
Indices: 77439366--77439557 Score: 182
Period size: 80 Copynumber: 2.4 Consensus size: 80
77439356 AGAAAGTCAA
** *
77439366 GGGTATTTCTA-TAATTTTGTAAATCAGGGGTATTTTGGTATTTTACAAATTGAGGGTATTTCGA
1 GGGTATTTC-AGTAATTTTACAAATCAGGGGTATTTTGGTATTTTACAAATAGAGGGTATTTCGA
77439430 TAATTTCACAAACTAG
65 TAATTTCACAAACTAG
*
77439446 TGGTATTTC-GATAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT
1 GGGTATTTCAG-TAATTTTACAAATC-AGGGGTATTTTGGT-ATTTTACAAA-TAGAGGGTATTT
* * **
77439508 TGGTAA-TTCTATCCTAC-AG
62 CGATAATTTC-A-CAAACTAG
* *
77439527 GGGTATTTCAGTAATTTCAC-AATCAAGGGTA
1 GGGTATTTCAGTAATTTTACAAATCAGGGGTA
77439558 AAATGGTAAT
Statistics
Matches: 92, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
79 1 0.01
80 43 0.47
81 42 0.46
82 6 0.07
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (80 bp):
GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTATTTTACAAATAGAGGGTATTTCGAT
AATTTCACAAACTAG
Found at i:77439555 original size:27 final size:26
Alignment explanation
Indices: 77439419--77439548 Score: 120
Period size: 27 Copynumber: 4.8 Consensus size: 26
77439409 TACAAATTGA
77439419 GGGTATTTCGATAATTTCACAAACTAG
1 GGGTATTTCG-TAATTTCACAAACTAG
* *
77439446 TGGTATTTCGATAATTTTACAAACTAG
1 GGGTATTTCG-TAATTTCACAAACTAG
* *
77439473 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTA-TTTCGTAATTTCACAAACTAG
* **
77439500 GGGTATTTTGGTAA-TTCTATCCTAC-AG
1 GGGTA-TTTCGTAATTTC-A-CAAACTAG
77439527 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTC-GTAATTTCACAA
77439549 TCAAGGGTAA
Statistics
Matches: 88, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
26 6 0.07
27 72 0.82
28 10 0.11
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.38
Consensus pattern (26 bp):
GGGTATTTCGTAATTTCACAAACTAG
Found at i:77439577 original size:27 final size:27
Alignment explanation
Indices: 77439547--77439717 Score: 216
Period size: 27 Copynumber: 6.3 Consensus size: 27
77439537 GTAATTTCAC
* *
77439547 AATCAAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
77439574 AATCGATGGTAAAATGATAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
77439601 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
77439628 AATCAAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * * *
77439655 AATTGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
**
77439682 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTGTA
77439709 AATCGAGGG
1 AATCGAGGG
77439718 CATTTTAGTA
Statistics
Matches: 124, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 124 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:77439650 original size:81 final size:81
Alignment explanation
Indices: 77439547--77439717 Score: 261
Period size: 81 Copynumber: 2.1 Consensus size: 81
77439537 GTAATTTCAC
* * * *
77439547 AATCAAGGGTAAAATGGTAATTTTGTAAATCGATGGTAAAATGATAATTCTGTAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA
*
77439612 AAATGGTAATTCTATA
66 AAATGGTAATTCTACA
* * *
77439628 AATCAAGGGTAAAACGGTAATTTTGTAAATTGAGGGTGAAACGGTAATTCTATAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA
77439693 AAATGGTAATTCTACA
66 AAATGGTAATTCTACA
*
77439709 AATCGAGGG
1 AATCAAGGG
77439718 CATTTTAGTA
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTA
AAATGGTAATTCTACA
Found at i:77451615 original size:24 final size:24
Alignment explanation
Indices: 77451514--77451615 Score: 132
Period size: 24 Copynumber: 4.2 Consensus size: 24
77451504 GCCAACACCG
*
77451514 TTCTCCCTAATCAGCTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
* *
77451538 TTCTCTCTTATCCGCTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
* * *
77451562 CTCTTCCTTATTAGCTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
* *
77451586 CTCTCCCTTATCAGCTCCCAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
77451610 TTCTCC
1 TTCTCC
77451616 TGACAGCCTT
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 66 1.00
ACGTcount: A:0.20, C:0.39, G:0.04, T:0.37
Consensus pattern (24 bp):
TTCTCCCTTATCAGCTCCTAAATC
Found at i:77452322 original size:30 final size:30
Alignment explanation
Indices: 77452287--77452346 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
77452277 CTTTAATACG
77452287 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* * *
77452317 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
77452347 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:77453304 original size:34 final size:34
Alignment explanation
Indices: 77453232--77453305 Score: 130
Period size: 34 Copynumber: 2.2 Consensus size: 34
77453222 CATGGAAAAG
77453232 TGTGAAACGTAGGTATGGTATTTCCATACAGAGC
1 TGTGAAACGTAGGTATGGTATTTCCATACAGAGC
* *
77453266 TGTGAAACGTAGGTATGGTATTTCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTTCCATACAGAGC
77453300 TGTGAA
1 TGTGAA
77453306 TCGTGGCATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.32
Consensus pattern (34 bp):
TGTGAAACGTAGGTATGGTATTTCCATACAGAGC
Found at i:77457120 original size:33 final size:32
Alignment explanation
Indices: 77457083--77457161 Score: 113
Period size: 33 Copynumber: 2.4 Consensus size: 32
77457073 GTAGAACTGC
77457083 AAAAGGAAATGTACACTATGTGTGTACAACTTA
1 AAAAGGAAATGTACACTATGTGTGTAC-ACTTA
* * *
77457116 AAAAGGAAACGTACACTTTGTGTGTACACTTG
1 AAAAGGAAATGTACACTATGTGTGTACACTTA
*
77457148 AAAAGAAAATGTAC
1 AAAAGGAAATGTAC
77457162 GCCTTATGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
32 16 0.39
33 25 0.61
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.25
Consensus pattern (32 bp):
AAAAGGAAATGTACACTATGTGTGTACACTTA
Found at i:77457172 original size:32 final size:32
Alignment explanation
Indices: 77457103--77457185 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 32
77457093 GTACACTATG
* * * *
77457103 TGTGTACAACTTAAAAAGGAAACGTACACTTTG
1 TGTGTAC-ACTTGAAAAGAAAACGTACACCTTA
* *
77457136 TGTGTACACTTGAAAAGAAAATGTACGCCTTA
1 TGTGTACACTTGAAAAGAAAACGTACACCTTA
*
77457168 TGTGTACAATGTGAAAAG
1 TGTGTACACT-TGAAAAG
77457186 TGGTAGCTTC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
32 28 0.67
33 14 0.33
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (32 bp):
TGTGTACACTTGAAAAGAAAACGTACACCTTA
Found at i:77457246 original size:31 final size:31
Alignment explanation
Indices: 77457178--77457384 Score: 247
Period size: 31 Copynumber: 6.5 Consensus size: 31
77457168 TGTGTACAAT
*
77457178 GTGAAAAGTGGTAGCTTCGGCTATACCTAATCA
1 GTGAAAAGTGGTAGCTTCGGC--TACCTGATCA
* *
77457211 GTGAAAAGTGGTAGCTTCGACTACCTGATCG
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
77457242 GTGAAAAGTGGTAGCTTTGGCTAGCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
77457273 GTGAAAAGTAGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
77457304 GTGAAAAGTGGTAGC-TCTAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTC-GGCTACCTGATCA
* *
77457335 GTGAATAGTGGTAGCTTCGGCTACAAGTGA-CAA
1 GTGAAAAGTGGTAGCTTCGGCTAC--CTGATC-A
*
77457368 GTGATAAGTGGTAGCTT
1 GTGAAAAGTGGTAGCTT
77457385 TAGCTACACT
Statistics
Matches: 150, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
30 2 0.01
31 106 0.71
32 3 0.02
33 39 0.26
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:77457479 original size:27 final size:27
Alignment explanation
Indices: 77457448--77457499 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
77457438 TAGTTGAACT
77457448 ATGGCAAAGTGATAAAGTGTACCAATC
1 ATGGCAAAGTGATAAAGTGTACCAATC
* *
77457475 ATGGCAAAGTGATATAGTGTGCCAA
1 ATGGCAAAGTGATAAAGTGTACCAA
77457500 GCATAACAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.23
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTACCAATC
Found at i:77457509 original size:27 final size:27
Alignment explanation
Indices: 77457452--77457512 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
77457442 TGAACTATGG
* **
77457452 CAAAGTGATAAAGTGTACCAATCATGG
1 CAAAGTGATAAAGTGTACCAAGCATAA
* *
77457479 CAAAGTGATATAGTGTGCCAAGCATAA
1 CAAAGTGATAAAGTGTACCAAGCATAA
77457506 CAAAGTG
1 CAAAGTG
77457513 TTCATTGATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (27 bp):
CAAAGTGATAAAGTGTACCAAGCATAA
Found at i:77461094 original size:56 final size:56
Alignment explanation
Indices: 77461008--77461141 Score: 189
Period size: 56 Copynumber: 2.4 Consensus size: 56
77460998 CATGGCATCG
*
77461008 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGACTTAA
1 ATATATGTGTGAGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGACTTAA
* * **
77461064 ATATATTTGTGAGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGA-TTCCG
1 ATATATGTGTGAGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGACTT-AA
* *
77461120 ATATATGTGTGTGGGTAAGACC
1 ATATATGTGTGAGAGTAAGACC
77461142 CTGTCTAGGA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 2 0.03
56 67 0.97
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (56 bp):
ATATATGTGTGAGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGACTTAA
Found at i:77461508 original size:27 final size:27
Alignment explanation
Indices: 77461478--77461531 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
77461468 TATATATGAG
77461478 TTGCGTATTAAGTTATATTATGGTATT
1 TTGCGTATTAAGTTATATTATGGTATT
77461505 TTGCGTATTAAGTTATATTATGGTATT
1 TTGCGTATTAAGTTATATTATGGTATT
77461532 ATGGTTTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.04, G:0.19, T:0.52
Consensus pattern (27 bp):
TTGCGTATTAAGTTATATTATGGTATT
Found at i:77465784 original size:43 final size:43
Alignment explanation
Indices: 77465736--77465854 Score: 159
Period size: 43 Copynumber: 2.8 Consensus size: 43
77465726 AATGTCGACA
* * *
77465736 TCCCAGACATGGTCTTACATGTAAT-TCAATATCGAAGCCTCTG
1 TCCCAGACACGGTCTTACACGAAATCTCAA-ATCGAAGCCTCTG
* * *
77465779 TCCCAGACAGGGTCTTACACGAAATCTCAAATCGAGGCCTGTG
1 TCCCAGACACGGTCTTACACGAAATCTCAAATCGAAGCCTCTG
*
77465822 TCCCAGACACGGTCTTACACGATATCTCAAATC
1 TCCCAGACACGGTCTTACACGAAATCTCAAATC
77465855 AATTTCGACT
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 64 0.94
44 4 0.06
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
TCCCAGACACGGTCTTACACGAAATCTCAAATCGAAGCCTCTG
Found at i:77472984 original size:14 final size:13
Alignment explanation
Indices: 77472964--77473000 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
77472954 AATATTTGAC
77472964 TTGTTCTTAATTA
1 TTGTTCTTAATTA
77472977 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
77472991 TTGTT-TTAAT
1 TTGTTCTTAAT
77473001 ATTCCAGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.22, C:0.05, G:0.11, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:77475302 original size:49 final size:49
Alignment explanation
Indices: 77475207--77475345 Score: 145
Period size: 49 Copynumber: 2.8 Consensus size: 49
77475197 TCTATTGTGA
* *
77475207 GGTCACATGTGTAGTACTAAGTGCAGCCTACTACATGTATCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGCCTACTACATGTACCCGATAATT
* * * **
77475256 GGTCGCATGTGTAGTACTAAGTTCAGGCTACTATGTGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGCCTACTACATGTACCCGATAA-TT
* ** *
77475306 CGATCATGTGTGTAGTACTAAGTGCAAG-CTACCACATGTA
1 -GGTCACATGTGTAGTACTAAGTGC-AGCCTACTACATGTA
77475346 TATGTTTAAG
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
49 40 0.56
50 2 0.03
51 28 0.39
52 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGCCTACTACATGTACCCGATAATT
Found at i:77481523 original size:40 final size:40
Alignment explanation
Indices: 77481464--77481651 Score: 173
Period size: 40 Copynumber: 4.7 Consensus size: 40
77481454 ATAACCACAA
* * * *** *
77481464 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
77481504 GCACAAATGCCTTCAGGTCTTAGCCCGAATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
77481544 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* * * * *
77481584 GCATAAATACCTTCGGGACTTAGCCCGGATATATTC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA-ACAACTC
* * *
77481624 GCATAAATGCCTTCAGGACTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
77481652 GTATCATTCA
Statistics
Matches: 126, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
40 125 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:77481597 original size:80 final size:78
Alignment explanation
Indices: 77481444--77481651 Score: 202
Period size: 80 Copynumber: 2.6 Consensus size: 78
77481434 TCCTCGAAAT
* * * ** *
77481444 TTAG-CCGAATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGAATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCAC
* *
77481508 AAATGCCTTCAGGTC
64 AAATACCTTCAGGAC
* * *
77481523 TTAGCCCGAATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCAT
1 TTAGCCCGAATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCAC
*
77481588 AAATACCTTCGGGAC
64 AAATACCTTCAGGAC
* * * * *
77481603 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCAGGACTTAGCCCGG
1 TTAGCCCGAATATA-ACACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
77481652 GTATCATTCA
Statistics
Matches: 106, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
79 5 0.05
80 98 0.92
81 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (78 bp):
TTAGCCCGAATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAA
ATACCTTCAGGAC
Found at i:77489559 original size:40 final size:40
Alignment explanation
Indices: 77489504--77489685 Score: 152
Period size: 40 Copynumber: 4.5 Consensus size: 40
77489494 ATAACCACAA
* * *** *
77489504 GCACAATTGCCTTCGGGTCTTAACCCAGATTTGGTAACTT
1 GCACAAATGCCTTCGGGTCTTAACCCAGATATAACAACTC
* *
77489544 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCAGATATAACAACTC
* * * *
77489584 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCAGATATAA-CAACTC
* * * * * *
77489624 GCATAAATGCCTTCGGGACTTAGCCCGGATATATTC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCAGATATA-ACAACTC
* *
77489664 GCATAAATGCCTTCGGGACTTA
1 GCACAAATGCCTTCGGGTCTTA
77489686 GACCGGGTAT
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
40 125 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCAGATATAACAACTC
Found at i:77489632 original size:80 final size:78
Alignment explanation
Indices: 77489484--77489691 Score: 220
Period size: 80 Copynumber: 2.6 Consensus size: 78
77489474 TCCTCGAAAT
* * * * ** *
77489484 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCAGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAA-CACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCAC
*
77489548 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGAC
* * *
77489563 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCAT
1 TTAGCCCGGATATAAC-ACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCAC
77489628 AAATGCCTTCGGGAC
64 AAATGCCTTCGGGAC
* * * *
77489643 TTAGCCCGGATATATTCACTAGCATAAATGCCTTCGGGACTTAGACCGG
1 TTAGCCCGGATATA-ACACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
77489692 GTATCATTCA
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.05
80 100 0.93
81 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAA
ATGCCTTCGGGAC
Found at i:77489686 original size:40 final size:40
Alignment explanation
Indices: 77489548--77489701 Score: 202
Period size: 40 Copynumber: 3.8 Consensus size: 40
77489538 TAACTTGCAC
* * * *
77489548 AAATGCCTTCGGGTCTTAGCCCGGATATA-ACAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATATTC-ACTAGCAT
* * *
77489588 GAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATATATTCACTAGCAT
77489628 AAATGCCTTCGGGACTTAGCCCGGATATATTCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATATATTCACTAGCAT
* *
77489668 AAATGCCTTCGGGACTTAGACCGGGTATCATTCA
1 AAATGCCTTCGGGACTTAGCCCGGATAT-ATTCA
77489702 AATGCTCATG
Statistics
Matches: 103, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
40 97 0.94
41 6 0.06
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATATATTCACTAGCAT
Found at i:77490443 original size:2 final size:2
Alignment explanation
Indices: 77490436--77490469 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
77490426 ATGTGCAAAC
77490436 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77490470 GTGCAAGAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77494992 original size:29 final size:29
Alignment explanation
Indices: 77494958--77495013 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
77494948 CCTTAACTCT
77494958 AACTTTTGCAAAATTACAATTTTTCCCTA
1 AACTTTTGCAAAATTACAATTTTTCCCTA
* * *
77494987 AACTTTTGCATATTTACACTTTTTCCC
1 AACTTTTGCAAAATTACAATTTTTCCC
77495014 CAAAGCTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.45
Consensus pattern (29 bp):
AACTTTTGCAAAATTACAATTTTTCCCTA
Found at i:77502488 original size:20 final size:21
Alignment explanation
Indices: 77502450--77502489 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
77502440 GCATGATGGT
*
77502450 AAGTTGGGCCTCGATGGGCTG
1 AAGTTGGGCCTCAATGGGCTG
77502471 AAGTTGGGCC-CAATGGGCT
1 AAGTTGGGCCTCAATGGGCT
77502490 TTCGGGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.17, C:0.20, G:0.40, T:0.23
Consensus pattern (21 bp):
AAGTTGGGCCTCAATGGGCTG
Found at i:77502967 original size:26 final size:25
Alignment explanation
Indices: 77502936--77503033 Score: 135
Period size: 26 Copynumber: 3.9 Consensus size: 25
77502926 GGAGGAAGTG
77502936 CAAAAGGGCTTATGCCCCAGTTTAC
1 CAAAAGGGCTTATGCCCCAGTTTAC
* *
77502961 CAAAAAGGGCTTATGCCCTAGTTTATT
1 C-AAAAGGGCTTATGCCCCAGTTTA-C
*
77502988 GAAAAGGGCTTATGCCCCAGTTTAC
1 CAAAAGGGCTTATGCCCCAGTTTAC
*
77503013 CGAAAGGGCTT-TGCCCCAGTT
1 CAAAAGGGCTTATGCCCCAGTT
77503034 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
24 10 0.16
25 10 0.16
26 44 0.69
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
CAAAAGGGCTTATGCCCCAGTTTAC
Found at i:77509054 original size:40 final size:40
Alignment explanation
Indices: 77508990--77509092 Score: 179
Period size: 40 Copynumber: 2.6 Consensus size: 40
77508980 GACTAAGATC
* *
77508990 CGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTCT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCT
77509030 CGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCT
*
77509070 CGAAGGCATTTGTACGAGTTACT
1 CGAAGGCATTTGTGCGAGTTACT
77509093 GTGACAGCCC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.32
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCT
Found at i:77510727 original size:29 final size:29
Alignment explanation
Indices: 77510694--77510825 Score: 122
Period size: 29 Copynumber: 4.6 Consensus size: 29
77510684 GTGACGAGAT
77510694 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
77510723 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
77510752 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
77510781 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
77510810 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77510826 AAATCGAGTA
Statistics
Matches: 83, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 2 0.02
29 81 0.98
ACGTcount: A:0.23, C:0.17, G:0.34, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:77518677 original size:29 final size:29
Alignment explanation
Indices: 77518644--77518775 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
77518634 GTGACGAGAT
77518644 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
77518673 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** * * ***
77518702 TGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
77518731 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
77518760 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77518776 AAATCGAGTA
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 2 0.02
29 83 0.98
ACGTcount: A:0.23, C:0.17, G:0.34, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:77520229 original size:40 final size:40
Alignment explanation
Indices: 77520184--77520292 Score: 175
Period size: 40 Copynumber: 2.8 Consensus size: 40
77520174 GGGGTGTTAC
77520184 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
1 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
77520224 AGTTACTATATCCGGACTAAGTCCCGAAGGCATTTGTGCG
1 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
** *
77520264 AGTTGTTATATCC-GGCTAAATCCCGAAGG
1 AGTTACTATATCCGGGCTAAGTCCCGAAGG
77520293 TACTTGGGTT
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
39 14 0.22
40 50 0.78
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
Found at i:77525557 original size:49 final size:49
Alignment explanation
Indices: 77525490--77525904 Score: 704
Period size: 49 Copynumber: 8.5 Consensus size: 49
77525480 TACATAATAG
**
77525490 TATATGTGATAAGGCCTAATGGCCGATGTGATGAGCGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
77525539 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
77525588 CATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
77525637 CATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * *
77525686 GATATGTGATAAGGCCTAATGGCCGATGTGGTAAATGTGAAAGCGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
77525735 TATATGTGATAAGGCCTAATGGCCGATGTGGTGACTGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
77525784 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
77525833 CATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
77525882 TATATGTGGTAAAGCCAAATGGC
1 TATATGTGATAAGGCCTAATGGC
77525905 TAATATGAAT
Statistics
Matches: 348, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 348 1.00
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:77526007 original size:37 final size:37
Alignment explanation
Indices: 77525953--77526080 Score: 220
Period size: 37 Copynumber: 3.4 Consensus size: 37
77525943 AACTTGGAAA
* *
77525953 TATGTTCCGGGTGAGACCCGATGACTACATGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
77525991 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
*
77526028 TATGTCCGGGTAAGACCCGATGACTTCGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
77526065 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
77526081 TTCGTAATAA
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 83 0.95
38 4 0.05
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:77528683 original size:24 final size:23
Alignment explanation
Indices: 77528656--77528711 Score: 55
Period size: 24 Copynumber: 2.4 Consensus size: 23
77528646 GGGAGAACTT
77528656 TTAGGGATTTGAGAGGGGA-TAGAG
1 TTAGGGATTTGA-A-GGGATTAGAG
*
77528680 TTAGCCGATTTGAAGGGATTAGAG
1 TTAG-GGATTTGAAGGGATTAGAG
77528704 --AGGGATTT
1 TTAGGGATTT
77528712 CGGCAGAGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
21 5 0.18
22 2 0.07
23 4 0.14
24 10 0.36
25 7 0.25
ACGTcount: A:0.29, C:0.04, G:0.39, T:0.29
Consensus pattern (23 bp):
TTAGGGATTTGAAGGGATTAGAG
Found at i:77529646 original size:20 final size:21
Alignment explanation
Indices: 77529608--77529647 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
77529598 GCATGGCGGT
*
77529608 AAGTTGGGCCTCGATGGGCTG
1 AAGTTGGGCCTCAATGGGCTG
77529629 AAGTTGGGCC-CAATGGGCT
1 AAGTTGGGCCTCAATGGGCT
77529648 TTCGGGCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.17, C:0.20, G:0.40, T:0.23
Consensus pattern (21 bp):
AAGTTGGGCCTCAATGGGCTG
Found at i:77529964 original size:25 final size:25
Alignment explanation
Indices: 77529917--77529964 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
77529907 TTATAGTATG
* * * *
77529917 AAAATGACTATTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
77529942 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
77529965 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:77530039 original size:20 final size:20
Alignment explanation
Indices: 77530016--77530066 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
77530006 TTGAGATGAT
*
77530016 ATGCACATGGTAGGTATAAA
1 ATGCACATGATAGGTATAAA
* * *
77530036 ATGCACATGATATGTATGAT
1 ATGCACATGATAGGTATAAA
77530056 ATGCACATGAT
1 ATGCACATGAT
77530067 GTATTCATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (20 bp):
ATGCACATGATAGGTATAAA
Found at i:77530208 original size:25 final size:26
Alignment explanation
Indices: 77530117--77530214 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
77530107 GAGGAAGTGC
77530117 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
77530143 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
77530169 AAAATGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
77530195 -AAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
77530215 ATTAAAAAAG
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
25 18 0.29
26 45 0.71
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:77530856 original size:18 final size:18
Alignment explanation
Indices: 77530833--77530867 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
77530823 ACTTAGGACG
*
77530833 TGTTTTCAAAACGACACT
1 TGTTTTCAAAACAACACT
*
77530851 TGTTTTCCAAACAACAC
1 TGTTTTCAAAACAACAC
77530868 AACGTTACGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (18 bp):
TGTTTTCAAAACAACACT
Found at i:77531266 original size:17 final size:17
Alignment explanation
Indices: 77531244--77531278 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
77531234 TAAGAGAGAT
77531244 AATAATATAACTTAGGG
1 AATAATATAACTTAGGG
77531261 AATAATATAACTTAGGG
1 AATAATATAACTTAGGG
77531278 A
1 A
77531279 TTTCTATGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.06, G:0.17, T:0.29
Consensus pattern (17 bp):
AATAATATAACTTAGGG
Found at i:77532908 original size:56 final size:56
Alignment explanation
Indices: 77532822--77532944 Score: 201
Period size: 56 Copynumber: 2.2 Consensus size: 56
77532812 CATGGCATCA
* ** *
77532822 ATATATGTGTGCGAGTAAGACTACGTTTAATATGTTGGCATCGATATGTGAGTTCG
1 ATATATGTGTGCGAGTAAAACTACGTTTAATACATTGGCATCGATATGTGACTTCG
*
77532878 ATATATGTGTGCGAGTAAAACTACGTTTAATACATTGGCATCGCTATGTGACTTCG
1 ATATATGTGTGCGAGTAAAACTACGTTTAATACATTGGCATCGATATGTGACTTCG
77532934 ATATATGTGTG
1 ATATATGTGTG
77532945 TGAGCAAGGC
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAAACTACGTTTAATACATTGGCATCGATATGTGACTTCG
Found at i:77534739 original size:40 final size:40
Alignment explanation
Indices: 77534684--77534968 Score: 439
Period size: 40 Copynumber: 7.2 Consensus size: 40
77534674 GGACTAAGAT
* * *
77534684 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
77534724 CCGAAGGCATTTGTGCGAGTTACTATATCC-GGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77534763 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
77534803 CCGAAGGCATTTGTACGAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77534843 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
77534883 CCGAAGGCATTTGTGTGAGTTACTATAGCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* ** * *
77534923 CCGAAGACATTTGTGCGAGTTGTTATAT-CTGGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
77534962 CCGAAGG
1 CCGAAGG
77534969 TACTTGGGTT
Statistics
Matches: 227, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 54 0.24
40 173 0.76
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:77538951 original size:49 final size:49
Alignment explanation
Indices: 77538772--77538951 Score: 149
Period size: 49 Copynumber: 3.7 Consensus size: 49
77538762 CGAGATGTGT
* * *
77538772 CAGTGTAAGACCATGTCT-GTGACATGGCATCGA-CAC-ATATAGA-AGTGT
1 CAGTGTAAGACCATGTCTAG-GACATGGCATCGACCACGATTTTGATA--GA
* * * * *
77538820 CAGTGTAAGACCATGTCTGGGACATGGCAGCG-GCACGAATATG-TGAGA
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGACCACGATTTTGAT-AGA
** *
77538868 GCTAGTGT-AGACCATGTCTAGGACATGGTGTCGACCTCGATTTTGATAGA
1 -C-AGTGTAAGACCATGTCTAGGACATGGCATCGACCACGATTTTGATAGA
*
77538918 CAGTGTAAGACCATGTCTAAGACATGGCATCGAC
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGAC
77538952 TTGATGGATG
Statistics
Matches: 105, Mismatches: 17, Indels: 19
0.74 0.12 0.13
Matches are distributed among these distances:
48 38 0.36
49 50 0.48
50 16 0.15
51 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTAGGACATGGCATCGACCACGATTTTGATAGA
Found at i:77538989 original size:47 final size:48
Alignment explanation
Indices: 77538821--77538996 Score: 148
Period size: 49 Copynumber: 3.6 Consensus size: 48
77538811 TAGAAGTGTC
* * * *
77538821 AGTGTAAGACCATGTCTGGGACATGGCAGCG-GCACGAATATGTGA-GAGCT
1 AGTGT-AGACCATGTCTAGGACATGGCATCGACCTCG-AT-TG-GATGAGCT
** *
77538871 AGTGTAGACCATGTCTAGGACATGGTGTCGACCTCGATTTTGAT-AGAC-
1 AGTGTAGACCATGTCTAGGACATGGCATCGACCTCGA-TTGGATGAG-CT
* *
77538919 AGTGTAAGACCATGTCTAAGACATGGCATCGA-CTTGA-TGGATGAGCT
1 AGTGT-AGACCATGTCTAGGACATGGCATCGACCTCGATTGGATGAGCT
*
77538966 AGTGTATGACCAAGTCTAGGACATGGCATCG
1 AGTGTA-GACCATGTCTAGGACATGGCATCG
77538997 GCATTATGCC
Statistics
Matches: 104, Mismatches: 14, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
46 6 0.06
47 29 0.28
48 13 0.12
49 47 0.45
50 9 0.09
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAGACCATGTCTAGGACATGGCATCGACCTCGATTGGATGAGCT
Found at i:77543376 original size:40 final size:40
Alignment explanation
Indices: 77543292--77543492 Score: 232
Period size: 40 Copynumber: 5.0 Consensus size: 40
77543282 TGGATGATAA
*
77543292 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * *
77543333 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
77543373 CCGGGCTAAGTCCCGAAGGCATTTGTTCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
77543413 CCAGGCTAAGTCCCGAAGGCATTAATGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
77543453 CCGGGCTATGT-CCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
77543491 CC
1 CC
77543493 TGTTAAATCC
Statistics
Matches: 138, Mismatches: 19, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
37 2 0.01
38 14 0.10
39 9 0.07
40 86 0.62
41 24 0.17
42 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:77545762 original size:17 final size:18
Alignment explanation
Indices: 77545720--77545768 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
77545710 AGTTGAAAAG
77545720 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
77545739 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
77545756 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
77545769 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:77546654 original size:40 final size:40
Alignment explanation
Indices: 77546588--77546738 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
77546578 AAATTGAATG
* * *
77546588 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
77546627 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
77546667 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
77546707 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
77546739 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:77546752 original size:40 final size:40
Alignment explanation
Indices: 77546624--77546754 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
77546614 TATGCTGGAA
* * * *
77546624 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
77546664 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
77546704 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
77546744 ATTATATCCGG
1 ATTATATCCGG
77546755 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:77555768 original size:49 final size:49
Alignment explanation
Indices: 77555703--77555953 Score: 448
Period size: 49 Copynumber: 5.1 Consensus size: 49
77555693 CCACATATAT
*
77555703 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
77555752 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
77555801 ATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
77555850 ATATATATACACTTTCACATTCATCACCTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
77555899 ATATGTATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
77555948 ATATAT
1 ATATAT
77555954 TATTATGTAC
Statistics
Matches: 194, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 194 1.00
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:77559087 original size:40 final size:40
Alignment explanation
Indices: 77558988--77559205 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
77558978 TGGATGATAA
*
77558988 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* * * *
77559029 CCAGGCTAAGTCCCGAAGGCATTTGTGCAAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
77559069 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
77559109 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
77559149 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
77559188 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
77559206 TACTTGGCTT
Statistics
Matches: 156, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 100 0.64
41 23 0.15
42 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:77562224 original size:20 final size:20
Alignment explanation
Indices: 77562195--77562241 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
77562185 ATTTTGATAA
*
77562195 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
77562215 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
77562235 ACATGAT
1 ACATGAT
77562242 GTATTCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:77562347 original size:24 final size:23
Alignment explanation
Indices: 77562291--77562457 Score: 210
Period size: 24 Copynumber: 7.0 Consensus size: 23
77562281 GAGGAAGTGA
77562291 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* * *
77562314 TAAAGGGCTTATGTCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
77562337 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
77562361 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
77562385 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
77562408 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
77562433 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
77562457 A
1 A
77562458 TGATAAAGCA
Statistics
Matches: 126, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
23 41 0.33
24 74 0.59
25 11 0.09
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:77562360 original size:47 final size:47
Alignment explanation
Indices: 77562291--77562457 Score: 212
Period size: 47 Copynumber: 3.5 Consensus size: 47
77562281 GAGGAAGTGA
* * *
77562291 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGTCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
77562337 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
77562385 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
77562433 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
77562458 TGATAAAGCA
Statistics
Matches: 106, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
47 65 0.61
48 29 0.27
49 12 0.11
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:77562407 original size:71 final size:71
Alignment explanation
Indices: 77562291--77562456 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
77562281 GAGGAAGTGA
* * * *
77562291 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGTCCTAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
77562356 GTTATC
66 GTTATC
*
77562362 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
77562427 GTTATT
66 GTTATC
*
77562433 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
77562457 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 75 0.87
72 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:77562687 original size:31 final size:31
Alignment explanation
Indices: 77562649--77562712 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
77562639 CCGTTACAGT
*
77562649 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
77562680 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
77562711 AA
1 AA
77562713 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:77567602 original size:40 final size:39
Alignment explanation
Indices: 77567565--77567747 Score: 221
Period size: 40 Copynumber: 4.7 Consensus size: 39
77567555 GCTACTCGTT
* *
77567565 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
* *
77567605 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
77567645 CAAATGCCTTCGGG-CTTAG-CCGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * *
77567682 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
77567723 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77567748 CATCATTCGA
Statistics
Matches: 125, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
36 2 0.02
37 24 0.19
38 9 0.07
39 9 0.07
40 69 0.55
41 12 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:77567689 original size:77 final size:80
Alignment explanation
Indices: 77567565--77567743 Score: 224
Period size: 77 Copynumber: 2.3 Consensus size: 80
77567555 GCTACTCGTT
* ** *
77567565 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCATAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAG-CCGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
77567629 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
**
77567645 CAAATGCCTTCGGG-CTTAGCCGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGACTTAGCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
77567708 TATAGTCACTTAGCA
66 TATAGTAACTTAGCA
77567723 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
77567744 CGGACATCAT
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
76 3 0.03
77 47 0.54
78 19 0.22
79 4 0.05
80 14 0.16
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:77570959 original size:319 final size:319
Alignment explanation
Indices: 77570374--77571004 Score: 1016
Period size: 319 Copynumber: 2.0 Consensus size: 319
77570364 GTGAGGTGAA
* *
77570374 TCTCGGATCTCTATCCGACACAATAGAAATTGGTACCCCTTGTAATCTCACAATCTGAGAAACAT
1 TCTCGGATCTCTATCCGACACAATAGAAATTGGTACCCCGTGTAATCTCAAAATCTGAGAAACAT
* *
77570439 ACAATTCAGCTAGTTTATCCAATGAAAAAATCGTACGTACGGGGATAAAATGAGCCGACTTAGTC
66 ACAACTCAGCTAGTTTATCCAATGAAAAAATCGTACGTACGGGGACAAAATGAGCCGACTTAGTC
* * *
77570504 AGTCTATCGACAACGACCCAAATCACATCTTTCTTACTTGCCGACACTGGCAACCCAGATACAAA
131 AGTCTATCCACAACAACCCAAATCACATCTTTCTTACTTGCCGACAATGGCAACCCAGATACAAA
*
77570569 ATCCATCGTGACTCGTTCCCATTTCCATTCAGGTATCATGATCGGATGAAGCAAACCCGTAGGAG
196 ATCCATCGTGACTCGATCCCATTTCCATTCAGGTATCATGATCGGATGAAGCAAACCCGTAGGAG
*
77570634 CTTGATGTTCCACCTTCACTTGCTGACATA-CAAAGCACTTCGAGACAAAATCAGTTATG
261 CTTGATGTTCCACCTTCACTTGCTGACATATCAAA-CACTTCGAAACAAAATCAGTTATG
*
77570693 TCTCGGATCTCTATCCGACACAATAGAAATTGGTACCCCGTGTAATCTTAAAATCTGAGAAACAT
1 TCTCGGATCTCTATCCGACACAATAGAAATTGGTACCCCGTGTAATCTCAAAATCTGAGAAACAT
* * * * * *
77570758 ACAACTCAGCTAGTTTTTCCAATG-AAAAGTCCGTGCGTATGGGGACAAAGTGAGTCGACTTAGT
66 ACAACTCAGCTAGTTTATCCAATGAAAAAAT-CGTACGTACGGGGACAAAATGAGCCGACTTAGT
* *
77570822 CAGTCTATCCACGACAACCCAAATCGCATCTTTCTTACTTGCCGACAATGGCAACCCAGATACAA
130 CAGTCTATCCACAACAACCCAAATCACATCTTTCTTACTTGCCGACAATGGCAACCCAGATACAA
* *
77570887 AATCCATCGTGACTCGATCCCATTTCCATTCAGGTATCATGATCGGCTGAAGTAAACCCGTAGGC
195 AATCCATCGTGACTCGATCCCATTTCCATTCAGGTATCATGATCGGATGAAGCAAACCCGTAGG-
* *
77570952 A-CTTGATGTTCCGCCTTCACTTGCTGACATATTAAACACTTCGAAACAAAATC
259 AGCTTGATGTTCCACCTTCACTTGCTGACATATCAAACACTTCGAAACAAAATC
77571005 GGAAATGTCT
Statistics
Matches: 287, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
318 5 0.02
319 278 0.97
320 4 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (319 bp):
TCTCGGATCTCTATCCGACACAATAGAAATTGGTACCCCGTGTAATCTCAAAATCTGAGAAACAT
ACAACTCAGCTAGTTTATCCAATGAAAAAATCGTACGTACGGGGACAAAATGAGCCGACTTAGTC
AGTCTATCCACAACAACCCAAATCACATCTTTCTTACTTGCCGACAATGGCAACCCAGATACAAA
ATCCATCGTGACTCGATCCCATTTCCATTCAGGTATCATGATCGGATGAAGCAAACCCGTAGGAG
CTTGATGTTCCACCTTCACTTGCTGACATATCAAACACTTCGAAACAAAATCAGTTATG
Found at i:77576000 original size:40 final size:39
Alignment explanation
Indices: 77575963--77576146 Score: 239
Period size: 40 Copynumber: 4.7 Consensus size: 39
77575953 GCTACTCGTT
* *
77575963 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
* *
77576003 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
77576043 CAAATGCCTTCGGG-CTTAGCCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * *
77576081 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
77576122 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77576147 CATCATTCGA
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
37 2 0.02
38 24 0.19
39 21 0.16
40 69 0.54
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:77576106 original size:78 final size:81
Alignment explanation
Indices: 77575963--77576146 Score: 252
Period size: 78 Copynumber: 2.3 Consensus size: 81
77575953 GCTACTCGTT
* * *
77575963 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
77576028 ATTTAGTAAC-TCGCA
66 ATATAGTAACTTAGCA
**
77576043 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
*
77576105 GATATAGTCACTTAGCA
65 GATATAGTAACTTAGCA
77576122 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77576147 CATCATTCGA
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
77 3 0.03
78 47 0.51
79 29 0.31
80 14 0.15
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:77581991 original size:25 final size:25
Alignment explanation
Indices: 77581962--77582009 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77581952 TTATAACATG
* * *
77581962 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
77581987 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
77582010 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:77582093 original size:11 final size:11
Alignment explanation
Indices: 77582057--77582112 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
77582047 CATGGTATGT
77582057 ATGATATGCAC
1 ATGATATGCAC
* *
77582068 ATGACATG--T
1 ATGATATGCAC
77582077 ATGATATGCAC
1 ATGATATGCAC
*
77582088 ATGATATG--T
1 ATGATATGCAC
77582097 ATGATATGCAC
1 ATGATATGCAC
77582108 ATGAT
1 ATGAT
77582113 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:77582112 original size:20 final size:20
Alignment explanation
Indices: 77582046--77582112 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
77582036 ATTTTGATAA
*
77582046 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
77582066 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
77582086 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
77582106 ACATGAT
1 ACATGAT
77582113 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:77582218 original size:24 final size:23
Alignment explanation
Indices: 77582162--77582328 Score: 228
Period size: 24 Copynumber: 7.0 Consensus size: 23
77582152 GAGGAAGTGA
77582162 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
77582185 TAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
77582208 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
77582232 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
77582256 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
77582279 AAAAAGGGCTTATGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
77582304 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
77582328 A
1 A
77582329 TGATAAAGCA
Statistics
Matches: 130, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
23 42 0.32
24 77 0.59
25 11 0.08
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:77582231 original size:47 final size:47
Alignment explanation
Indices: 77582162--77582328 Score: 230
Period size: 47 Copynumber: 3.5 Consensus size: 47
77582152 GAGGAAGTGA
* *
77582162 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
77582208 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
*
77582256 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
77582304 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
77582329 TGATAAAGCA
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
47 66 0.61
48 30 0.28
49 12 0.11
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:77582278 original size:71 final size:71
Alignment explanation
Indices: 77582162--77582327 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
77582152 GAGGAAGTGA
* * *
77582162 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
77582227 GTTATC
66 GTTATC
77582233 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
77582298 GTTATT
66 GTTATC
*
77582304 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
77582328 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 77 0.88
72 11 0.12
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:77582560 original size:31 final size:31
Alignment explanation
Indices: 77582524--77582585 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
77582514 TTATAGTAAA
* *
77582524 GGCTTCGGGCCAGTAATATGAAATTTGAAAT
1 GGCTTCGGCCCAGTAATATGAAATATGAAAT
**
77582555 GGCTTCGGCCCAGTGTTATGAAATATGAAAT
1 GGCTTCGGCCCAGTAATATGAAATATGAAAT
77582586 ATGAAAAGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (31 bp):
GGCTTCGGCCCAGTAATATGAAATATGAAAT
Found at i:77590504 original size:40 final size:40
Alignment explanation
Indices: 77590442--77590658 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
77590432 AAACCAAGTA
* * * * *
77590442 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
77590481 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77590521 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77590561 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCA-ACAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACA-AATG
* *
77590601 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77590641 CCTTC-GGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77590659 TTATCATCGA
Statistics
Matches: 162, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 28 0.17
40 133 0.82
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77594253 original size:12 final size:12
Alignment explanation
Indices: 77594236--77594261 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77594226 CATGGGTCGG
77594236 ATAATTTTTCTC
1 ATAATTTTTCTC
77594248 ATAATTTTTCTC
1 ATAATTTTTCTC
77594260 AT
1 AT
77594262 GTGGCTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.15, G:0.00, T:0.58
Consensus pattern (12 bp):
ATAATTTTTCTC
Found at i:77598615 original size:40 final size:40
Alignment explanation
Indices: 77598553--77598770 Score: 309
Period size: 40 Copynumber: 5.5 Consensus size: 40
77598543 AAACCAAGTA
* * * *
77598553 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
77598592 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77598632 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
77598672 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
77598712 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77598752 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77598771 TTATCATCCG
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 14 0.08
40 152 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77602549 original size:29 final size:29
Alignment explanation
Indices: 77602508--77602745 Score: 225
Period size: 29 Copynumber: 8.3 Consensus size: 29
77602498 GTGAGCATGG
* * *
77602508 ATAT-AATGTGATTTGGGTCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * * *
77602536 ATATAAATGAG-ATTGGGCCTAACGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
*
77602564 ATATGAATGTGAATTGGGCCTGATCGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * * *
77602593 ATATGAACGTGAATTGGGTCGGATGGACC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * * * *
77602622 ATATAAATGAG-ATTGGGCCTAACGGGTC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
77602650 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
77602679 ATATGAACGTGAATTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * *
77602708 AAATAAATGAG-ATTGGGCCT-AGTGGGCC
1 ATATGAATGTGAATTGGGCCTGA-TGGGCC
*
77602736 ATATGCATGT
1 ATATGAATGT
77602746 ATATAGGGGT
Statistics
Matches: 165, Mismatches: 41, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
27 1 0.01
28 65 0.39
29 99 0.60
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:77602664 original size:86 final size:86
Alignment explanation
Indices: 77602515--77602745 Score: 381
Period size: 86 Copynumber: 2.7 Consensus size: 86
77602505 TGGATATAAT
*
77602515 GTGATTTGGGTCGGATGGGCCATATAAATGAGATTGGGCCTAACGGGCCATATGAATGTGAATTG
1 GTGAATTGGGTCGGATGGGCCATATAAATGAGATTGGGCCTAACGGGCCATATGAATGTGAATTG
77602580 GGCCTGATCGGCCATATGAAC
66 GGCCTGATCGGCCATATGAAC
* *
77602601 GTGAATTGGGTCGGATGGACCATATAAATGAGATTGGGCCTAACGGGTCATATGAATGTGAATTG
1 GTGAATTGGGTCGGATGGGCCATATAAATGAGATTGGGCCTAACGGGCCATATGAATGTGAATTG
*
77602666 GGCCTGATGGGCCATATGAAC
66 GGCCTGATCGGCCATATGAAC
* * ** *
77602687 GTGAATTGGGCCGGATGGGCCAAATAAATGAGATTGGGCCTAGTGGGCCATATGCATGT
1 GTGAATTGGGTCGGATGGGCCATATAAATGAGATTGGGCCTAACGGGCCATATGAATGT
77602746 ATATAGGGGT
Statistics
Matches: 134, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 134 1.00
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.25
Consensus pattern (86 bp):
GTGAATTGGGTCGGATGGGCCATATAAATGAGATTGGGCCTAACGGGCCATATGAATGTGAATTG
GGCCTGATCGGCCATATGAAC
Found at i:77602723 original size:57 final size:56
Alignment explanation
Indices: 77602515--77602740 Score: 206
Period size: 57 Copynumber: 4.0 Consensus size: 56
77602505 TGGATATAAT
* * * *
77602515 GTGATTTGGGTCGGATGGGCCATATAAATGAGATTGGGCCTAACGGGCCATATGAA
1 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTGATGGGCCATATGAA
* * * * * *
77602571 TGTGAATTGGGCCTGATCGGCCATATGAACGTGA-ATTGGGTCGGATGGACCATAT-AA
1 -GTGAATTGGGCCGGATGGGCCATAT-AA-ATGAGATTGGGCCTGATGGGCCATATGAA
* ** * * * *
77602628 ATGAGATTGGGCCTAACGGGTCATATGAATGTGAATTGGGCCTGATGGGCCATATGAA
1 GTGA-ATTGGGCCGGATGGGCCATATAAATGAG-ATTGGGCCTGATGGGCCATATGAA
*
77602686 CGTGAATTGGGCCGGATGGGCCAAATAAATGAGATTGGGCCT-AGTGGGCCATATG
1 -GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTGA-TGGGCCATATG
77602741 CATGTATATA
Statistics
Matches: 132, Mismatches: 29, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
55 2 0.02
56 5 0.04
57 78 0.59
58 41 0.31
59 6 0.05
ACGTcount: A:0.27, C:0.15, G:0.34, T:0.25
Consensus pattern (56 bp):
GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTGATGGGCCATATGAA
Found at i:77610159 original size:16 final size:16
Alignment explanation
Indices: 77610138--77610180 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
77610128 GTAGATCGGC
77610138 AAAAGCCAAAATACTG
1 AAAAGCCAAAATACTG
*
77610154 AAAAGCTAAAATACTG
1 AAAAGCCAAAATACTG
77610170 AAAAGCCAAAA
1 AAAAGCCAAAA
77610181 GTTCAGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.60, C:0.16, G:0.12, T:0.12
Consensus pattern (16 bp):
AAAAGCCAAAATACTG
Found at i:77610424 original size:28 final size:29
Alignment explanation
Indices: 77610396--77610621 Score: 201
Period size: 28 Copynumber: 8.0 Consensus size: 29
77610386 GCATGGGTAT
* * *
77610396 AATGTGATTTGGGTCGGATGGGCCATATA
1 AATGTGAATTGGGCCTGATGGGCCATATA
** * * *
77610425 AATAAG-ATTGGGCCTAACGGGCCATATG
1 AATGTGAATTGGGCCTGATGGGCCATATA
* * * *
77610453 AATGTGAATTGGGCTTGATCGGCTATATG
1 AATGTGAATTGGGCCTGATGGGCCATATA
* *
77610482 AACGTGAATTGGGCCGGATGGGCCATATA
1 AATGTGAATTGGGCCTGATGGGCCATATA
* * * *
77610511 AATGAG-ATTGGGCCTAACGGGCCATATG
1 AATGTGAATTGGGCCTGATGGGCCATATA
*
77610539 AATGTGAATTGGGCC-GATGGGCCTTAT-
1 AATGTGAATTGGGCCTGATGGGCCATATA
* * *
77610566 GACGTGAATTGGGCCGGATGGGCCATATA
1 AATGTGAATTGGGCCTGATGGGCCATATA
* *
77610595 AATGAG-ATTGGGCCTAATGGGCCATAT
1 AATGTGAATTGGGCCTGATGGGCCATAT
77610622 GCATGTATGT
Statistics
Matches: 154, Mismatches: 39, Indels: 9
0.76 0.19 0.04
Matches are distributed among these distances:
27 13 0.08
28 82 0.53
29 59 0.38
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.26
Consensus pattern (29 bp):
AATGTGAATTGGGCCTGATGGGCCATATA
Found at i:77610604 original size:84 final size:86
Alignment explanation
Indices: 77610399--77610627 Score: 365
Period size: 86 Copynumber: 2.7 Consensus size: 86
77610389 TGGGTATAAT
* * *
77610399 GTGATTTGGGTCGGATGGGCCATATAAATAAGATTGGGCCTAACGGGCCATATGAATGTGAATTG
1 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAACGGGCCATATGAATGTGAATTG
*
77610464 GGCTTGATCGGCTATATGAAC
66 GGCTCGATCGGCTATATGAAC
77610485 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAACGGGCCATATGAATGTGAATTG
1 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAACGGGCCATATGAATGTGAATTG
*
77610550 GGC-CGATGGGCCT-TATG-AC
66 GGCTCGATCGG-CTATATGAAC
* *
77610569 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGCATGT
1 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAACGGGCCATATGAATGT
77610628 ATGTAGGGGT
Statistics
Matches: 135, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
84 59 0.44
85 9 0.07
86 67 0.50
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.26
Consensus pattern (86 bp):
GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAACGGGCCATATGAATGTGAATTG
GGCTCGATCGGCTATATGAAC
Found at i:77614339 original size:47 final size:46
Alignment explanation
Indices: 77614232--77614355 Score: 144
Period size: 47 Copynumber: 2.7 Consensus size: 46
77614222 TTTGTGTGCC
* * *
77614232 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCT
1 AGTGTAAGACATGTCTGAGACATGCATCGGCCACATGACGAGAGCT
*
77614278 AGTGTAAGACCATGTCTGAGATATGACATCGG-CA-ATGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGAGACATG-CATCGGCCACAT--GACGAGAGCT
* *
77614326 AGTGTAAGACATGTTTGGGACATGCATCGG
1 AGTGTAAGACATGTCTGAGACATGCATCGG
77614356 TCTCGAGATG
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
46 17 0.25
47 27 0.40
48 23 0.34
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGAGACATGCATCGGCCACATGACGAGAGCT
Found at i:77614383 original size:46 final size:44
Alignment explanation
Indices: 77614226--77614446 Score: 176
Period size: 46 Copynumber: 4.8 Consensus size: 44
77614216 GGGTTATTTG
* * *
77614226 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTA
1 TGTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCTACGA-GA
* * * * * * *
77614270 TGAGAGCTAGTGTAAGACCATGTCTGAGATATGACATCGGCAATGAGA
1 T--GTGCCAGTGTAAGA-CATGTTTGGGACATG-CATCGGCTACGAGA
* * *
77614318 CGAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGTCT-CGAGA
1 --TGTGCCAGTGTAAGACATGTTTGGGACATGCATCGG-CTACGAGA
*
77614364 TGTAAGCCAGTGTAGGACATGTTTGGGACATGCATCGGCTACGAGA
1 TGT--GCCAGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGA
* *
77614410 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 TGTGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCG
77614447 TCACGTATAG
Statistics
Matches: 144, Mismatches: 20, Indels: 24
0.77 0.11 0.13
Matches are distributed among these distances:
44 12 0.08
45 15 0.10
46 67 0.47
47 26 0.18
48 23 0.16
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (44 bp):
TGTGCCAGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGA
Found at i:77614528 original size:50 final size:49
Alignment explanation
Indices: 77614416--77614540 Score: 150
Period size: 48 Copynumber: 2.6 Consensus size: 49
77614406 GAGATGTGTC
* * *
77614416 AGTGTAAGACCATGTCTGGGACATGGCATCGTCACGTATAGAAGTGTCT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGTCAAGTATAGAAGAGTCT
*
77614465 -GTGTAAGACCATGTCTAGGACATGGCATCCG-CATAG-ATATGTGAGAG-CT
1 AGTGTAAGACCATGTCTAGGACATGGCAT-CGTCA-AGTATA-G-AAGAGTCT
77614514 AGTGTAAGACCATGTCTAGGACATGGC
1 AGTGTAAGACCATGTCTAGGACATGGC
77614541 GTTGGCCTTG
Statistics
Matches: 67, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
48 32 0.48
49 6 0.09
50 29 0.43
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGTCAAGTATAGAAGAGTCT
Found at i:77616184 original size:29 final size:29
Alignment explanation
Indices: 77616151--77616252 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
77616141 GTGACGAGAT
*
77616151 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
77616180 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
77616209 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
77616238 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
77616253 GAGCTCGAAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:77616268 original size:29 final size:29
Alignment explanation
Indices: 77616151--77616312 Score: 107
Period size: 29 Copynumber: 5.6 Consensus size: 29
77616141 GTGACGAGAT
* **
77616151 TGGCACTAAGTGTGC-ATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* * **
77616180 TGGCACTGAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* **
77616209 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
77616238 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
** * * *
77616267 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
77616296 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
77616313 AATCGAGTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
28 2 0.02
29 111 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:77616281 original size:58 final size:59
Alignment explanation
Indices: 77616147--77616273 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 59
77616137 TACGGTGACG
* * *
77616147 AGAT-TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
*
77616204 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
* *
77616262 GGGTATGGCACT
1 AGATATGGCACT
77616274 GTGTGTGCGG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 3 0.05
58 57 0.93
59 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (59 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
Done.