Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 256 of 335
Found at i:77618604 original size:30 final size:30
Alignment explanation
Indices: 77618549--77618679 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
77618539 ATAGTGAATC
*
77618549 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
77618578 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
77618608 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
77618636 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
77618666 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77618680 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:77618659 original size:58 final size:58
Alignment explanation
Indices: 77618548--77618679 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
77618538 TATAGTGAAT
* * * * *
77618548 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
77618607 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
77618665 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
77618680 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:77626563 original size:30 final size:30
Alignment explanation
Indices: 77626508--77626638 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
77626498 ATAGTGAATC
*
77626508 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
77626537 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
77626567 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
77626595 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
77626625 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77626639 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:77626618 original size:58 final size:58
Alignment explanation
Indices: 77626507--77626638 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
77626497 TATAGTGAAT
* * * * *
77626507 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
77626566 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
77626624 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
77626639 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:77635284 original size:29 final size:29
Alignment explanation
Indices: 77635251--77635352 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
77635241 GTGACGAGAT
*
77635251 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
77635280 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
77635309 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
77635338 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
77635353 GAGCTCGAAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:77635368 original size:29 final size:29
Alignment explanation
Indices: 77635251--77635412 Score: 107
Period size: 29 Copynumber: 5.6 Consensus size: 29
77635241 GTGACGAGAT
* **
77635251 TGGCACTAAGTGTGC-ATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* * **
77635280 TGGCACTGAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* **
77635309 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
77635338 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
** * * *
77635367 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
77635396 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
77635413 AATCGAGTAT
Statistics
Matches: 114, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
28 2 0.02
29 111 0.97
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:77635381 original size:58 final size:59
Alignment explanation
Indices: 77635247--77635373 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 59
77635237 TACGGTGACG
* * *
77635247 AGAT-TGGCACTAAGTGTGCATGCTGGAAAAATATGGCACTGAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
*
77635304 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
* *
77635362 GGGTATGGCACT
1 AGATATGGCACT
77635374 GTGTGTGCGG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 3 0.05
58 57 0.93
59 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (59 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
Found at i:77638479 original size:93 final size:93
Alignment explanation
Indices: 77638320--77638490 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
77638310 CGCCCATAAG
* * *
77638320 CGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCACATCCATGAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCAGGCATTCACATCCATAAGTGAACTCAGACTCAACTCA
77638385 ACGAGTTCGGATGACTAGTTACATCCCA
66 ACGAGTTCGGATGACTAGTTACATCCCA
* ** * *
77638413 CGAACTCGGACTCAACTCAACAAGTTC-GGACATTTGCATCCATAAGTGAACTCGGATTCAACTC
1 CGAACTCGGACTCAACTCAACAAGCTCAGG-CATTCACATCCATAAGTGAACTCAGACTCAACTC
77638477 AACGAGTTCGGATG
65 AACGAGTTCGGATG
77638491 CCCAAACATC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCAGGCATTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGACTAGTTACATCCCA
Found at i:77638488 original size:46 final size:47
Alignment explanation
Indices: 77638313--77638485 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 47
77638303 GGTAACCCGC
* * *
77638313 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGACATTTACAT
* * * * *
77638359 CCATGAGTGAACTCAGACTCAACTCAACGAGTTCGGATGACTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC--AGGAC-ATTTACAT
* * *
77638409 CC--CA-CGAACTCGGACTCAACTCAACAAGTTC-GGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGACATTTACAT
* *
77638452 CCATAAGTGAACTCGGATTCAACTCAACGAGTTC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC
77638486 GGATGCCCAA
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
43 8 0.08
44 3 0.03
45 1 0.01
46 54 0.53
47 24 0.24
48 3 0.03
49 1 0.01
50 7 0.07
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.21
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCAGGACATTTACAT
Found at i:77650934 original size:20 final size:20
Alignment explanation
Indices: 77650909--77650954 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
77650899 TCGGATTTAG
*
77650909 ATCGAGGAAAATCGAAGGTT
1 ATCGAGGAAAATCAAAGGTT
77650929 ATCGAGGAAAATCAAAGGTT
1 ATCGAGGAAAATCAAAGGTT
77650949 ATCGAG
1 ATCGAG
77650955 TAATCGATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.41, C:0.11, G:0.28, T:0.20
Consensus pattern (20 bp):
ATCGAGGAAAATCAAAGGTT
Found at i:77654360 original size:41 final size:43
Alignment explanation
Indices: 77654311--77654402 Score: 109
Period size: 44 Copynumber: 2.2 Consensus size: 43
77654301 TCCCAGACAA
*
77654311 GGTCTTACACG-AGATCATATA-CGATGCCAA-GTCCTAAATAT
1 GGTCTTACACGTAGATCATA-AGCGATGCCAACGTCCCAAATAT
* * *
77654352 GGTCTTACACGTATATCATAAGTCGATGCCAACGTCCCAGATGT
1 GGTCTTACACGTAGATCATAAG-CGATGCCAACGTCCCAAATAT
77654396 GGTCTTA
1 GGTCTTA
77654403 TAGGAAAACA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
41 12 0.28
42 7 0.16
43 9 0.21
44 15 0.35
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAGATCATAAGCGATGCCAACGTCCCAAATAT
Found at i:77658496 original size:40 final size:40
Alignment explanation
Indices: 77658451--77658654 Score: 304
Period size: 40 Copynumber: 5.1 Consensus size: 40
77658441 CGAGCTTTAA
** *
77658451 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
**
77658491 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
77658531 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77658571 CCGGA-ATTAGTAACTCGCACAAATGCCTTTGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77658611 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
77658651 CCGG
1 CCGG
77658655 TTATCATCCG
Statistics
Matches: 152, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 151 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77662376 original size:20 final size:20
Alignment explanation
Indices: 77662331--77662379 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
77662321 TCAAAGCATT
77662331 TCATATAATAATCATAATCC
1 TCATATAATAATCATAATCC
** *
77662351 AAATATAATAACTCAT-ATGC
1 TCATATAATAA-TCATAATCC
77662371 TCATATAAT
1 TCATATAAT
77662380 TATAACATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (20 bp):
TCATATAATAATCATAATCC
Found at i:77662900 original size:18 final size:21
Alignment explanation
Indices: 77662869--77662907 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
77662859 ATAATGAGCA
77662869 TATATAACACATCAT-TCATT
1 TATATAACACATCATATCATT
77662889 TATAT-ACA-ATCATATCATT
1 TATATAACACATCATATCATT
77662908 CGTTGTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 8 0.44
20 5 0.28
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (21 bp):
TATATAACACATCATATCATT
Found at i:77663180 original size:42 final size:43
Alignment explanation
Indices: 77663078--77663185 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 43
77663068 AGCTCATACA
* * *
77663078 ATGCCAATGTCCCAGAC-GTGGTTTTACATGTAATCAAATATTG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAATATTG
* * * *
77663121 ATGCCACTATCCTAGACAGGGTCTTACACGAAATCATATA-TG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATTG
*
77663163 ATGCCAATGTCCCAGACATGGTC
1 ATGCCAATGTCCCAGACAGGGTC
77663186 ACGTGGTCTT
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
42 21 0.40
43 31 0.58
44 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATTG
Found at i:77665042 original size:40 final size:40
Alignment explanation
Indices: 77664987--77665150 Score: 181
Period size: 40 Copynumber: 4.1 Consensus size: 40
77664977 TGATACCCGA
* **
77664987 GCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGG
1 GCTAAGACCCGAAGGCATTCGTGCTAGTGATTATATCCGG
*
77665027 GCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCGG
1 GCTAAGACCCGAAGGCATTCGTGCTAG-TGATTATATCCGG
* * ** *
77665067 GCTAAGACCCGAAGGCATTCGTGCAAGTTACCAAATCCGG
1 GCTAAGACCCGAAGGCATTCGTGCTAGTGATTATATCCGG
* * *
77665107 GTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATATCC-G
1 GCTAAGACCCGAAGGC-ATTCGTGCTAGTGATTATATCCGG
77665146 GCTAA
1 GCTAA
77665151 ATTCCGAAGA
Statistics
Matches: 103, Mismatches: 18, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
39 6 0.06
40 92 0.89
41 5 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GCTAAGACCCGAAGGCATTCGTGCTAGTGATTATATCCGG
Found at i:77672825 original size:40 final size:40
Alignment explanation
Indices: 77672770--77672910 Score: 149
Period size: 40 Copynumber: 3.5 Consensus size: 40
77672760 TGAATGATAC
* * *
77672770 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TTATAT
*
77672810 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
* * * *** *
77672850 CCGGGCTAAGACCCGAACGCATTCGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
* *
77672890 CTGGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
77672911 ATTGTGCTTG
Statistics
Matches: 87, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 85 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
Found at i:77674236 original size:2 final size:2
Alignment explanation
Indices: 77674231--77674260 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
77674221 GGCATCACAC
77674231 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
77674261 CTTTACAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:77677380 original size:20 final size:21
Alignment explanation
Indices: 77677340--77677382 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
77677330 AAACTTGTAT
*
77677340 ATCTATCAACAAGCATTCAAA
1 ATCTATCAACAAACATTCAAA
*
77677361 ATCTATCAAGAAAC-TTCAAA
1 ATCTATCAACAAACATTCAAA
77677381 AT
1 AT
77677383 ACACATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.49, C:0.21, G:0.05, T:0.26
Consensus pattern (21 bp):
ATCTATCAACAAACATTCAAA
Found at i:77688452 original size:37 final size:37
Alignment explanation
Indices: 77688388--77688463 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
77688378 TTAAAACCCA
77688388 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
77688425 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
77688462 AA
1 AA
77688464 CATCGATCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 4 0.11
37 30 0.86
38 1 0.03
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.25
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:77689486 original size:22 final size:22
Alignment explanation
Indices: 77689458--77689501 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
77689448 CAACTCACAT
77689458 GCATCATAATATTATCAAATAA
1 GCATCATAATATTATCAAATAA
*
77689480 GCATCATTATATTATCAAATAA
1 GCATCATAATATTATCAAATAA
77689502 CATACATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.48, C:0.14, G:0.05, T:0.34
Consensus pattern (22 bp):
GCATCATAATATTATCAAATAA
Found at i:77700141 original size:24 final size:24
Alignment explanation
Indices: 77700093--77700146 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
77700083 CCGATTAGGT
*
77700093 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
* * *
77700117 TTCCGGCGGTGCTTCGGTGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
77700141 TCCCGG
1 TCCCGG
77700147 AATATAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.07, C:0.37, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:77700531 original size:42 final size:42
Alignment explanation
Indices: 77700477--77700582 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
77700467 GGCTCTTGGT
* *
77700477 TGTGCAGGAGCCTCGGTG-ACCATCAGCACCTTGGTGCTCA-GA
1 TGTGCGGGAGCCTCGG-GCACCATCAGCACCTTGGTGC-AAGGA
* *
77700519 TGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGA
1 TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGCAAGGA
*
77700561 TGTGCGAGAGCCTC-GGCACCAT
1 TGTGCGGGAGCCTCGGGCACCAT
77700583 TGGCAACCTA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.18
42 46 0.82
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGCAAGGA
Found at i:77700631 original size:43 final size:43
Alignment explanation
Indices: 77700444--77701228 Score: 876
Period size: 43 Copynumber: 18.4 Consensus size: 43
77700434 GCCTCGGACA
* * * * * *
77700444 CCTCGGACACCATCTGCAAACTAGGCTCTTGGTTGTGCAGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * ** * *
77700487 CCTCGGTG-ACCATCAGC-ACCTTGGTGCTCAGAT-GTGCGGGAG
1 CCTCGG-GCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAG
* * ** ** *
77700529 CCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-GTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * **
77700571 CCTC-GGCACCATTGGCAACCTAGGACCTTGGTCGTATGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
77700613 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
77700656 CCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGTGGCAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
77700699 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * *
77700742 CCTCGGACACCATCGGC-ACCTTGGCGCTTGGAT-GTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* * * *
77700784 CCTCAGACACCATTGGCAACCTAGGCACTTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * *
77700827 TCTC-GGCACTATCGGCAACCTAGGCCCCTGGTCGTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
77700869 CCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
77700912 CATCGGGCACCATCGGCAACCTAGG-CCTCTGGTCGTGCGGGAT
1 CCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAG
* *
77700955 CCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
77700998 CCTCGGGCACCATCGG-TACCTAGGCCCCTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* *
77701040 CCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGAAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
** ** *
77701083 CCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-GTACGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAG
* *
77701125 CCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * *
77701168 CCTCAGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAG
1 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
77701211 CCTTGGGCACCATCGGCA
1 CCTCGGGCACCATCGGCA
77701229 CCTTGCTGCC
Statistics
Matches: 641, Mismatches: 84, Indels: 34
0.84 0.11 0.04
Matches are distributed among these distances:
41 15 0.02
42 215 0.34
43 409 0.64
44 2 0.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (43 bp):
CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
Found at i:77700881 original size:256 final size:256
Alignment explanation
Indices: 77700444--77701320 Score: 973
Period size: 256 Copynumber: 3.4 Consensus size: 256
77700434 GCCTCGGACA
* * * * * ** *
77700444 CCTCGGACACCATCTGCAAACTAGGCTCTTGGTTGTGCAGGAGCCTCGGTGACCATCAGCACCTT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTT
* ** ** * * ** * *
77700509 GGTGCTCAGATGTGCGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-GTGCGAGAGC
66 GGCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCACATGG-TCGTGCGGGAGC
* *
77700572 CTCGGCACCATTGGCAACCTAGGACCTTGGTCGTATGGGAGCCTCGGGCACCATCGGCAACCTAG
130 CTCGGCACCATCGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAG
* * * *
77700637 GCCCTTGGTCGTACGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGTGGCAG
195 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
*
77700699 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGCACCTT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTT
* * * *
77700764 GGCGCTTGGATGTACGGGAGCCTCAGACACCATTGGCAACCTAGGCACTTGGTCGTGCGGGAGTC
66 GGCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCACATGGTCGTGCGGGAGCC
* * * * *
77700829 TCGGCACTATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGG
131 TCGGCACCATCGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGG
* * *
77700894 CCCCTGGTCGTGCGGGAGCATCGGGCACCATCGGCAACCTAGG-CCTCTGGTCGTGCGGGAT
196 CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAG
* * * * * *
77700955 CCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGTACCTA
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTT
* * * * * * *
77701020 GGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGAAGC
66 GGCGCTTGGAT-GTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCACATGGTCGTGCGGGAGC
** ** * *
77701084 CTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCAGACACCATCGGCAACCT
130 CTC-GGCACCATCGGCAACCTAGGACCTTGG-TCGTACGGGAGCCTCGGGCACCATCGGCAACCT
* * *
77701147 AGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAG
193 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
* * * * * * *
77701211 CCTTGGGCACCATCGGC-ACCT-TGCTGCCTCAGAT-GTGCGGGAGCCTC-GAGCAGCATTGGCA
1 CCTCGGACACCATCGGCAACCTAGGC--CCT-TGGTCGTGCGGGAGCCTCGGA-CACCATCGGCA
* * *
77701272 CCTTGGTGCTTGGATGTGCGGAAGCCTCAGACACCATAGGCAACCTAGG
62 CCTTGGCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGG
77701321 ACGTTGGATG
Statistics
Matches: 521, Mismatches: 89, Indels: 23
0.82 0.14 0.04
Matches are distributed among these distances:
254 2 0.00
255 95 0.18
256 406 0.78
257 18 0.03
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.18
Consensus pattern (256 bp):
CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTT
GGCGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCACATGGTCGTGCGGGAGCC
TCGGCACCATCGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGG
CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
Found at i:77701284 original size:128 final size:129
Alignment explanation
Indices: 77700562--77701320 Score: 858
Period size: 128 Copynumber: 5.9 Consensus size: 129
77700552 GTGCAAGGAT
* * * * **
77700562 GTGCGAGAGCCTC-GGCACCATTGGCAACCTAGGACCTTGGTCGTATGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
77700626 CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
77700690 GTGTGGCAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * * *
77700755 CGGC-ACCTTGGCGCTTGGAT-GTACGGGAGCCTCAGACACCATTGGCAACCTAGGCACTTGGTC
66 CGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
77700818 GTGCGGGAGTCTC-GGCACTATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
77700882 CGGCAACCTAGGCCCCTGGTCGTGCGGGAGCATCGGGCACCATCGGCAACCTAGG-CCTCTGGTC
66 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCT-TGGTC
* *
77700946 GTGCGGGATCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * *
77701011 CGG-TACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** ** * * * *
77701074 GTGCGGAAGCCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCAGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCA
*
77701137 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGGTC
65 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * * *
77701202 ATGCGGGAGCCTTGGGCACCATCGGC-ACCTTGCTGCCTCAGAT-GTGCGGGAGCCTCGAGCAGC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAG--GCCCCTGGTCGTGCGGGAGCCTCGGGCACC
* * ** * * *
77701265 ATTGGC-ACCTTGGTGCTTGGAT-GTGCGGAAGCCTCAGACACCATAGGCAACCTAGG
64 ATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGG
77701321 ACGTTGGATG
Statistics
Matches: 541, Mismatches: 78, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
127 82 0.15
128 329 0.61
129 128 0.24
130 2 0.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (129 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:77701331 original size:85 final size:85
Alignment explanation
Indices: 77700444--77701347 Score: 807
Period size: 85 Copynumber: 10.6 Consensus size: 85
77700434 GCCTCGGACA
* * * * * * *
77700444 CCTCGGACACCATCTGCAAACTAGGCTCTTGGTTGTGCAGGAGCCTCG-GTGACCATCAGCACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCATCGGCACCT
* ** * *
77700508 TGGTGCTCAGAT-GTGCGGGAG
65 AGGCCCT-TGGTCGTGCGGGAG
* * * ** ** * *
77700529 CCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-GTGCGAGAGCCTCG-GCACCATTGGCAACC
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGC-ACC
* **
77700591 TAGGACCTTGGTCGTATGGGAG
64 TAGGCCCTTGGTCGTGCGGGAG
* * * *
77700613 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCAGCAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCT
* *
77700678 AGGCCCTTGGTCGTGTGGCAG
65 AGGCCCTTGGTCGTGCGGGAG
*
77700699 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCG-GACACCATCGGCACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAG-CACCATCGGCACCT
* * *
77700763 TGGCGCTTGGAT-GTACGGGAG
65 AGGCCCTTGG-TCGTGCGGGAG
* * * * *
77700784 CCTCAGACACCATTGGCAACCTAGGCACTTGGTCGTGCGGGAGTCTCG-GCACTATCGGCAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCT
* *
77700848 AGGCCCCTGGTCGTGCGAGAG
65 AGGCCCTTGGTCGTGCGGGAG
* * * *
77700869 CCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCATCGGGCACCATCGGCAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGC-ACCT
*
77700934 AGG-CCTCTGGTCGTGCGGGAT
65 AGGCCCT-TGGTCGTGCGGGAG
* * * * *
77700955 CCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGTACCTA
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTA
*
77701020 GGCCCCTGGTCGTGCGGGAG
66 GGCCCTTGGTCGTGCGGGAG
* * * * *
77701040 CCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGAAGCCTCGGGCACCATCGGCACCTT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTA
* ** *
77701105 CGTGCTTGGAT-GTACGGGAG
66 GGCCCTTGG-TCGTGCGGGAG
* *
77701125 CCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-AGGCACCATCGGTAACC
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA-GCACCATCGG-CACC
*
77701189 TAGGCCCTTGGTCATGCGGGAG
64 TAGGCCCTTGGTCGTGCGGGAG
* * * * * * *
77701211 CCTTGGGCACCATCGGC-ACCT-TGCTGCCTCAGAT-GTGCGGGAGCCTCGAGCAGCATTGGCAC
1 CCTCGGACACCATCGGCAACCTAGGC--CCT-TGGTCGTGCGGGAGCCTCGAGCACCATCGGCAC
* ** *
77701273 CTTGGTGCTTGGAT-GTGCGGAAG
63 CTAGGCCCTTGG-TCGTGCGGGAG
* * * *
77701296 CCTCAGACACCATAGGCAACCTAGGACGTTGGAT-GTGC-GGATGCCTCGAGCA
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA-GCCTCGAGCA
77701348 GCAGGGGCAC
Statistics
Matches: 681, Mismatches: 112, Indels: 52
0.81 0.13 0.06
Matches are distributed among these distances:
83 9 0.01
84 69 0.10
85 360 0.53
86 239 0.35
87 4 0.01
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.18
Consensus pattern (85 bp):
CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTA
GGCCCTTGGTCGTGCGGGAG
Found at i:77701373 original size:43 final size:42
Alignment explanation
Indices: 77701207--77701378 Score: 125
Period size: 43 Copynumber: 4.0 Consensus size: 42
77701197 TGGTCATGCG
* * * * * * *
77701207 GGAGCCTTGGGCACCATCGGCACCTTGCTGCCTCAGATGTGC
1 GGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGATGTGC
* * *
77701249 GGGAGCCTCGAGCAGCATTGGCACCTTGGTG-CTTGGATGTGC
1 -GGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGATGTGC
* * * * *
77701291 GGAAGCCTC-AGACACCATAGGCAACCTAGG-ACGTTGGATGTGC
1 GG-AGCCTCGAG-CAGCATAGGCACCCT-GGTGCCTCGGATGTGC
**
77701334 GGATGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGATGTGC
1 GGA-GCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGATGTGC
77701377 GG
1 GG
77701379 GCTAAAGAAA
Statistics
Matches: 102, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
41 4 0.04
42 29 0.28
43 67 0.66
44 2 0.02
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.19
Consensus pattern (42 bp):
GGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGATGTGC
Found at i:77711587 original size:27 final size:27
Alignment explanation
Indices: 77711557--77711808 Score: 299
Period size: 27 Copynumber: 9.3 Consensus size: 27
77711547 TACTGAAATG
*
77711557 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
77711584 CCCTTGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * **
77711611 CCCTCGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
77711638 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
77711665 CCCTCGATTTGTAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
77711692 CCCTTGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* ***
77711719 CCATCGATTTATAGAATTATTGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
77711746 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
77711773 CCCTC-AGTTTACAAAATTACCATTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
77711800 CCCTCGATT
1 CCCTCGATT
77711809 GTGAAATTAC
Statistics
Matches: 192, Mismatches: 31, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 190 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:77711674 original size:81 final size:81
Alignment explanation
Indices: 77711557--77711808 Score: 335
Period size: 81 Copynumber: 3.1 Consensus size: 81
77711547 TACTGAAATG
* * * * *
77711557 CCCTCGATTTGTAGAATTACCATTTTACCCTTGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTA
*
77711622 CAAAATTACTGTTTTA
66 CAAAATTACCGTTTTA
* *
77711638 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTGTAAAATTACCATTTTACCCTTGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTA
* * *
77711703 TAGAATTACCGTTTCA
66 CAAAATTACCGTTTTA
* *** *
77711719 CCATCGATTTATAGAATTATTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTC-AGTTT
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGA-TTT
*
77711783 ACAAAATTACCATTTTA
65 ACAAAATTACCGTTTTA
77711800 CCCTCGATT
1 CCCTCGATT
77711809 GTGAAATTAC
Statistics
Matches: 147, Mismatches: 23, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
80 1 0.01
81 146 0.99
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTA
CAAAATTACCGTTTTA
Found at i:77711870 original size:27 final size:27
Alignment explanation
Indices: 77711840--77711963 Score: 151
Period size: 27 Copynumber: 4.6 Consensus size: 27
77711830 TGTAGGATAG
77711840 AATTACCAAAATACCACTAGTTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAA
*
77711867 AATTACCAAAATTACCCCTAGTTTGTAA
1 AATTACCAAAA-TACCACTAGTTTGTAA
** * * *
77711895 AATTACTGAAATACAACTGGTTTGTGA
1 AATTACCAAAATACCACTAGTTTGTAA
* *
77711922 AATTACCGAAATACC-CTCAATTTGTAA
1 AATTACCAAAATACCACT-AGTTTGTAA
77711949 AATTACCAAAATACC
1 AATTACCAAAATACC
77711964 CTTGATTTAC
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.02
27 56 0.68
28 24 0.29
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCACTAGTTTGTAA
Found at i:77711899 original size:55 final size:54
Alignment explanation
Indices: 77711840--77711963 Score: 160
Period size: 55 Copynumber: 2.3 Consensus size: 54
77711830 TGTAGGATAG
*
77711840 AATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATTACCC-CTAGTTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTACCAAAA-TACCCTC-AATTTGTAA
** * * * *
77711895 AATTACTGAAATACAACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAA
77711949 AATTACCAAAATACC
1 AATTACCAAAATACC
77711964 CTTGATTTAC
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
54 25 0.43
55 33 0.57
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCACTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAA
Found at i:77711964 original size:27 final size:26
Alignment explanation
Indices: 77711840--77711992 Score: 146
Period size: 27 Copynumber: 5.7 Consensus size: 26
77711830 TGTAGGATAG
77711840 AATTACCAAAATACCACTAGTTTGTAA
1 AATTACCAAAATACC-CTAGTTTGTAA
77711867 AATTACCAAAATTACCCCTAGTTTGTAA
1 AATTACCAAAA-TA-CCCTAGTTTGTAA
** * * *
77711895 AATTACTGAAATACAACTGGTTTGTGA
1 AATTACCAAAATAC-CCTAGTTTGTAA
* *
77711922 AATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCT-AGTTTGTAA
* **
77711949 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCAAAATACCCTAG-TTTGTAA
77711976 AATTA-CAGAAATACCCT
1 AATTACCA-AAATACCCT
77711993 TGACTTTCTA
Statistics
Matches: 105, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
26 5 0.05
27 76 0.72
28 22 0.21
29 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTGTAA
Found at i:77712015 original size:29 final size:27
Alignment explanation
Indices: 77711921--77712050 Score: 129
Period size: 27 Copynumber: 4.7 Consensus size: 27
77711911 CTGGTTTGTG
* ** **
77711921 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACAGAAATACCCTTGATTTACA
77711948 AAATTACCA-AAATACCCTTGATTTACA
1 AAATTA-CAGAAATACCCTTGATTTACA
77711975 AAATTACAGAAATACCCTTGACTTT-CTAA
1 AAATTACAGAAATACCCTTGA-TTTAC--A
* * *
77712004 AAATTATAGAAATACCATTGGTTTACA
1 AAATTACAGAAATACCCTTGATTTACA
*
77712031 AAATTACTGAAATACCCTTG
1 AAATTACAGAAATACCCTTG
77712051 GTTTGTAGAT
Statistics
Matches: 86, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
26 2 0.02
27 57 0.66
28 7 0.08
29 20 0.23
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACAGAAATACCCTTGATTTACA
Found at i:77712051 original size:27 final size:27
Alignment explanation
Indices: 77711893--77712054 Score: 114
Period size: 27 Copynumber: 5.9 Consensus size: 27
77711883 CCTAGTTTGT
* **
77711893 AAAATTACTGAAATACAAC-TGGTTTGT
1 AAAATTACTGAAATAC-CCTTGGTTTAC
* * *** **
77711920 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACTGAAATACCCTTGGTTTAC
** *
77711947 AAAATTACCAAAATACCCTTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
77711974 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
*
77712001 TAAAAATTA-TAGAAATACCATTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
77712030 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
77712055 GTAGATTTAC
Statistics
Matches: 109, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
26 1 0.01
27 82 0.75
28 7 0.06
29 19 0.17
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:77712138 original size:27 final size:27
Alignment explanation
Indices: 77712095--77712168 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
77712085 AAATGACTAA
*
77712095 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
77712122 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
77712149 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
77712169 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:77712172 original size:27 final size:27
Alignment explanation
Indices: 77712108--77712172 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
77712098 ACCCCTAATA
*
77712108 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
77712135 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
77712162 GGTAAAATGAC
1 GGTAAAATGAC
77712173 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:77713064 original size:24 final size:24
Alignment explanation
Indices: 77712982--77713064 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
77712972 AGGAAGTGCT
* *
77712982 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
77713006 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
* *
77713031 AGAAAGGGCTTTGCCCTAG-TTATT
1 A-AAAGGGCTTTGCCCCAGTTTATC
77713055 AAAAGAGGCT
1 AAAAG-GGCT
77713065 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:77713258 original size:42 final size:42
Alignment explanation
Indices: 77713199--77713290 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
77713189 TAGTCTCCCC
*
77713199 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
77713241 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
77713283 AAATGGGC
1 AAATGGGC
77713291 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:77713349 original size:31 final size:31
Alignment explanation
Indices: 77713314--77713428 Score: 214
Period size: 31 Copynumber: 3.7 Consensus size: 31
77713304 CGTTTACAGT
77713314 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
77713345 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
77713376 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
77713407 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
77713429 TCAAGACTAA
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
30 5 0.06
31 78 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:77718703 original size:40 final size:40
Alignment explanation
Indices: 77718649--77718806 Score: 262
Period size: 40 Copynumber: 4.0 Consensus size: 40
77718639 CGGATGTAAC
* *
77718649 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
77718689 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
77718729 AACCCGCAAGAATGCCTTCGGGACTTAACCCGGTTATAGT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
77718769 AACCCGCACGAATGCCTTCGGGACTTAACCCAGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
77718807 TTTTTTTCCA
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 110 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:77726595 original size:40 final size:40
Alignment explanation
Indices: 77726540--77726683 Score: 254
Period size: 40 Copynumber: 3.6 Consensus size: 40
77726530 CAGCACAAAA
*
77726540 GCCTTTGGGACTTAACCCGGTTATAATAACCCGCACGAAT
1 GCCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAAT
77726580 GCCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAAT
1 GCCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAAT
* *
77726620 GCCTTCGGGACTTAACCCGATTATAGTAACCCGCACGAAT
1 GCCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAAT
77726660 GCCTT-GGGACTTAACCCGGTTATA
1 GCCTTCGGGACTTAACCCGGTTATA
77726684 TTTTTTTCCA
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 18 0.18
40 82 0.82
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGTTATAATAACCCGCACGAAT
Found at i:77731923 original size:44 final size:45
Alignment explanation
Indices: 77731862--77731958 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 45
77731852 ACTGCTTAAG
* ** **
77731862 GAGATAAGATCTTCAATCTTCAGTCTGCT-TCCTTGCTACCTCAG-
1 GAGATAAGATCTACAATCGCCAACCTGCTCT-CTTGCTACCTCAGA
77731906 GAAGATAAGA-CTACAATCGCCAACCTGCTCTCTTGCTACCTCAGA
1 G-AGATAAGATCTACAATCGCCAACCTGCTCTCTTGCTACCTCAGA
77731951 GAGATAAG
1 GAGATAAG
77731959 GCTAATGGCT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
44 35 0.78
45 10 0.22
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (45 bp):
GAGATAAGATCTACAATCGCCAACCTGCTCTCTTGCTACCTCAGA
Found at i:77732178 original size:180 final size:176
Alignment explanation
Indices: 77731793--77732361 Score: 854
Period size: 180 Copynumber: 3.2 Consensus size: 176
77731783 GTGGTGACTT
* *
77731793 AAATTTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCATTGATCTGCTCCACAACTGCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATC-TTGATCTGCTCCACAACTGCT
77731858 TAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT
65 TAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAAT
** *
77731923 CGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAATGGCTA
130 CTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
*
77731970 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCCATCTGCTCCACAACTGCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTT-GATCTGCTCCACAACTGCT
* *
77732035 TAAGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTGCTACCTTAGGAAGATAAGACTAC
65 TAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCC-T--TGCTACCTCAGGAAGATAAGACTAC
* * *
77732100 CATATTCAACCTGCTCTCTTGCTACCTCAGATAGATAAGGCTAGTGGCTA
127 AATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
* * * ** *
77732150 AAAACTACTCCATTGTCGATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCTGCTACTGCT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATC-TTGATCTGCTCCACAACTGCT
* *
77732215 GAGGGAGATAAGATCCTT-AATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT-CAA
65 TAAGGAGATAAGAT-CTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAA
* *
77732278 TCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATATGGTTAGTGGCTA
129 TCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
* *
77732326 AAATCTGCTCTATTGCTGATACATGGAGATAAGATT
1 AAATCTGCTCCATTGCCGATACATGGAGATAAGATT
77732362 TGTCGTCTTT
Statistics
Matches: 354, Mismatches: 32, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
176 79 0.22
177 116 0.33
178 1 0.00
179 1 0.00
180 152 0.43
181 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (176 bp):
AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTGATCTGCTCCACAACTGCTT
AAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTACAATC
TTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
Found at i:77732312 original size:43 final size:43
Alignment explanation
Indices: 77732218--77732312 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 43
77732208 TACTGCTGAG
* **
77732218 GGAGATAAGATCCTTAATCTTCAGTCTGCTTCCTTGCTACCTCA
1 GGAGATAAGA-CCTCAATCTTCAACCTGCTTCCTTGCTACCTCA
77732262 GGAAGATAAGA-CTCAATCTTCAACCTGC-TCTCTTGCTACCTCA
1 GG-AGATAAGACCTCAATCTTCAACCTGCTTC-CTTGCTACCTCA
77732305 GAGAGATA
1 G-GAGATA
77732313 TGGTTAGTGG
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
42 2 0.04
43 32 0.71
44 3 0.07
45 8 0.18
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (43 bp):
GGAGATAAGACCTCAATCTTCAACCTGCTTCCTTGCTACCTCA
Found at i:77732447 original size:176 final size:177
Alignment explanation
Indices: 77731793--77732447 Score: 708
Period size: 180 Copynumber: 3.7 Consensus size: 177
77731783 GTGGTGACTT
* * * *
77731793 AAATTTGCTCCATTGCCGATACATGGAGATAAGATTCACCATCATTGATCTGCTCCA--CAACTG
1 AAATCTGCTCCATTGCTGATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCATGCAACT-
* * * * *
77731856 CTTAAGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGC-TACCTCAGGAAGATAAGACTAC
65 CTTAGGGAGATAAGACCTTC-ATCTTCAGTCTACTTCCCTGCAT-CTTCAGGAAGATAAGACTAC
** *
77731920 AATCGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAATGGCTA
128 AATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
* **
77731970 AAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCCATCTGCTCCA--CAACTG
1 AAATCTGCTCCATTGCTGATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCATGCAACT-
* * *
77732033 CTTAAGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTGCTACCTT-AGGAAGATAAGAC
65 CTTAGGGAGATAAGACCTTC-ATCTTCAGTCTACTTCC---CTGC-ATCTTCAGGAAGATAAGAC
* * *
77732097 TACCATATTCAACCTGCTCTCTTGCTACCTCAGATAGATAAGGCTAGTGGCTA
125 TACAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
* * *
77732150 AAAACTACTCCATTG-TCGATACATGGAGATAAGATTCGCCATCTTTGATCTGCT-C-TGCTACT
1 AAATCTGCTCCATTGCT-GATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCATGCAACT
* * * * *
77732212 GCTGAGGGAGATAAGATCCTTAATCTTCAGTCTGCTTCCTTGC-TACCTCAGGAAGATAAGACT-
65 -CTTAGGGAGATAAGA-CCTTCATCTTCAGTCTACTTCCCTGCAT-CTTCAGGAAGATAAGACTA
* *
77732275 CAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATATGGTTAGTGGCTA
127 CAATCTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
* * * * *
77732326 AAATCTGCTCTATTGCTGATACATGGAGATAAGATTTGTCGTCTTTGGTCTGCTCCATTGCAACT
1 AAATCTGCTCCATTGCTGATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCA-TGCAACT
* ** *
77732391 -TTAGGGAAATAAGACCTGTCA-CTTCAACCTAC-TCCACTGCATCTTCAGGGAGATAAG
65 CTTAGGGAGATAAGACCT-TCATCTTCAGTCTACTTCC-CTGCATCTTCAGGAAGATAAG
77732448 GTTTGTAATC
Statistics
Matches: 409, Mismatches: 51, Indels: 37
0.82 0.10 0.07
Matches are distributed among these distances:
175 3 0.01
176 120 0.29
177 129 0.32
179 7 0.02
180 145 0.35
181 5 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (177 bp):
AAATCTGCTCCATTGCTGATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCATGCAACTC
TTAGGGAGATAAGACCTTCATCTTCAGTCTACTTCCCTGCATCTTCAGGAAGATAAGACTACAAT
CTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
Found at i:77732752 original size:64 final size:63
Alignment explanation
Indices: 77732560--77732742 Score: 231
Period size: 64 Copynumber: 2.9 Consensus size: 63
77732550 TTCATGTATC
* * * ** * *
77732560 ATGCTTATGCCAATTAATTAGGATTGTATGATCAAAATGAATCAAGTACTCCTAACTAGATGTG
1 ATGCTGATGTCAAATAATTAGGATACTATGATC-AAATGAATCAAATGCTCCTAACTAGATGTG
* * ** *
77732624 ATGATGATGTAAAATAATTAGGACGCTATGATCGAAATAAATCAAATGCTCCTAACTAGATGTG
1 ATGCTGATGTCAAATAATTAGGATACTATGATC-AAATGAATCAAATGCTCCTAACTAGATGTG
77732688 ATGCTGATGTCAAATAATTAGGATACTATGATCAAAGTGAATCAAATGCTCCTAA
1 ATGCTGATGTCAAATAATTAGGATACTATGATCAAA-TGAATCAAATGCTCCTAA
77732743 TGTGATGTGA
Statistics
Matches: 101, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
63 3 0.03
64 98 0.97
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (63 bp):
ATGCTGATGTCAAATAATTAGGATACTATGATCAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:77732795 original size:13 final size:13
Alignment explanation
Indices: 77732777--77732801 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77732767 CAAAAATAAG
77732777 AATGATCTTTTTA
1 AATGATCTTTTTA
77732790 AATGATCTTTTT
1 AATGATCTTTTT
77732802 TTTTAAATGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (13 bp):
AATGATCTTTTTA
Found at i:77733876 original size:18 final size:17
Alignment explanation
Indices: 77733864--77733932 Score: 66
Period size: 18 Copynumber: 3.6 Consensus size: 17
77733854 ATTTTCTTTC
77733864 TTTTTTTATTTTTATTT
1 TTTTTTTATTTTTATTT
77733881 TTATTTTTATTTTTATTT
1 TT-TTTTTATTTTTATTT
*
77733899 AATTTTTTAATTTTTTAATTT
1 --TTTTTTTA-TTTTT-ATTT
77733920 TGATTTTTTATTT
1 T--TTTTTTATTT
77733933 CGATCTCTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
17 2 0.05
18 15 0.35
19 6 0.14
20 10 0.23
21 10 0.23
ACGTcount: A:0.19, C:0.00, G:0.01, T:0.80
Consensus pattern (17 bp):
TTTTTTTATTTTTATTT
Found at i:77733909 original size:8 final size:8
Alignment explanation
Indices: 77733896--77733920 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
77733886 TTTATTTTTA
77733896 TTTAATTT
1 TTTAATTT
77733904 TTTAATTT
1 TTTAATTT
77733912 TTTAATTT
1 TTTAATTT
77733920 T
1 T
77733921 GATTTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTAATTT
Found at i:77733920 original size:6 final size:6
Alignment explanation
Indices: 77733866--77733898 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
77733856 TTTCTTTCTT
77733866 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
77733899 AATTTTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:77733928 original size:8 final size:7
Alignment explanation
Indices: 77733865--77733932 Score: 59
Period size: 7 Copynumber: 9.4 Consensus size: 7
77733855 TTTTCTTTCT
77733865 TTTTTTA
1 TTTTTTA
77733872 -TTTTTA
1 TTTTTTA
77733878 -TTTTTA
1 TTTTTTA
*
77733884 TTTTTATT
1 TTTTT-TA
77733892 TTTATTTAA
1 TTT-TTT-A
77733901 TTTTTTAA
1 TTTTTT-A
77733909 TTTTTTA
1 TTTTTTA
* *
77733916 ATTTTGA
1 TTTTTTA
77733923 TTTTTTA
1 TTTTTTA
77733930 TTT
1 TTT
77733933 CGATCTCTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
6 12 0.24
7 18 0.35
8 16 0.31
9 5 0.10
ACGTcount: A:0.19, C:0.00, G:0.01, T:0.79
Consensus pattern (7 bp):
TTTTTTA
Found at i:77738128 original size:20 final size:20
Alignment explanation
Indices: 77738103--77738140 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
77738093 CTGATAAAAC
* *
77738103 ATTTTGTTCCATTTAAATCA
1 ATTTTGGTCCATGTAAATCA
77738123 ATTTTGGTCCATGTAAAT
1 ATTTTGGTCCATGTAAAT
77738141 TTAAAAATGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.47
Consensus pattern (20 bp):
ATTTTGGTCCATGTAAATCA
Found at i:77749409 original size:20 final size:18
Alignment explanation
Indices: 77749377--77749413 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 18
77749367 GGAAATGGCT
77749377 TGTAACACCCTAAACCCGG
1 TGTAACACCCT-AACCCGG
77749396 TGTAACACCCCTAACCCG
1 TGTAACA-CCCTAACCCG
77749414 TATCCATCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.30, C:0.41, G:0.14, T:0.16
Consensus pattern (18 bp):
TGTAACACCCTAACCCGG
Found at i:77759817 original size:40 final size:40
Alignment explanation
Indices: 77759755--77760025 Score: 272
Period size: 40 Copynumber: 6.8 Consensus size: 40
77759745 AATTATTGTA
*
77759755 TGATTGCACATACATGCCCCTGTTTCTACTTCGGTACCCC
1 TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* ** * *
77759795 TGCTTGCACATATGTGCTCCTGTTTGTAATTCGGTACCCC
1 TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * **
77759835 TGATTGCACATACATGCCCCTATTTGTACTTTGGTACCGT
1 TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * * *
77759875 TGATTGCACTTACATGCCCTTATTTGTACTTCGTTACCCC
1 TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
** * *
77759915 TGATTGCACATATGTGCCCCTGTTTGTACTTCAGTGCCCC
1 TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * * * * * *
77759955 TAAATGCACATACGTACCCCTGTTTGAACTTTGGTACCTC
1 TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * * *
77759995 TGATTACACCATACGTGCCGCTGTTTATACT
1 TGATTGCA-CATACATGCCCCTGTTTGTACT
77760026 CTGGTAACTC
Statistics
Matches: 185, Mismatches: 45, Indels: 1
0.80 0.19 0.00
Matches are distributed among these distances:
40 167 0.90
41 18 0.10
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.36
Consensus pattern (40 bp):
TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:77759936 original size:20 final size:19
Alignment explanation
Indices: 77759911--77759976 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
77759901 TACTTCGTTA
77759911 CCCCTGATTGCACATATGTG
1 CCCCTGATTGCACATA-GTG
* * *
77759931 CCCCTGTTTGTACTTCAGTG
1 CCCCTGATTGCACAT-AGTG
* * *
77759951 CCCCTAAATGCACATACGTA
1 CCCCTGATTGCACATA-GTG
77759971 CCCCTG
1 CCCCTG
77759977 TTTGAACTTT
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
19 1 0.03
20 32 0.94
21 1 0.03
ACGTcount: A:0.20, C:0.35, G:0.17, T:0.29
Consensus pattern (19 bp):
CCCCTGATTGCACATAGTG
Found at i:77759999 original size:120 final size:120
Alignment explanation
Indices: 77759755--77759992 Score: 332
Period size: 120 Copynumber: 2.0 Consensus size: 120
77759745 AATTATTGTA
* * *
77759755 TGATTGCACATACATGCCCCTGTTTCTACTTCGGTACCCCTGCTTGCACATATGTGCTCCTGTTT
1 TGATTGCACATACATGCCCCTATTTCTACTTCGGTACCCCTGATTGCACATATGTGCCCCTGTTT
* * * * *
77759820 GTAATTCGGTACCCCTGATTGCACATACATGCCCCTATTTGTACTTTGGTACCGT
66 GTAATTCAGTACCCCTAAATGCACATACATACCCCTATTTGAACTTTGGTACCGT
* * * *
77759875 TGATTGCACTTACATGCCCTTATTTGTACTTCGTTACCCCTGATTGCACATATGTGCCCCTGTTT
1 TGATTGCACATACATGCCCCTATTTCTACTTCGGTACCCCTGATTGCACATATGTGCCCCTGTTT
* * * *
77759940 GTACTTCAGTGCCCCTAAATGCACATACGTACCCCTGTTTGAACTTTGGTACC
66 GTAATTCAGTACCCCTAAATGCACATACATACCCCTATTTGAACTTTGGTACC
77759993 TCTGATTACA
Statistics
Matches: 102, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
120 102 1.00
ACGTcount: A:0.18, C:0.29, G:0.17, T:0.36
Consensus pattern (120 bp):
TGATTGCACATACATGCCCCTATTTCTACTTCGGTACCCCTGATTGCACATATGTGCCCCTGTTT
GTAATTCAGTACCCCTAAATGCACATACATACCCCTATTTGAACTTTGGTACCGT
Found at i:77761000 original size:12 final size:12
Alignment explanation
Indices: 77760983--77761015 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
77760973 GAAAATTATC
77760983 TTAATTGAGGGG
1 TTAATTGAGGGG
77760995 TTAATTGAGGGG
1 TTAATTGAGGGG
77761007 TTAATTGAG
1 TTAATTGAG
77761016 CAAGGACTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.27, C:0.00, G:0.36, T:0.36
Consensus pattern (12 bp):
TTAATTGAGGGG
Found at i:77762187 original size:31 final size:31
Alignment explanation
Indices: 77762152--77762331 Score: 279
Period size: 31 Copynumber: 5.8 Consensus size: 31
77762142 ACAAATGACA
** *
77762152 AGTGAAAAGTGGTAGCTTTTGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
77762183 AGTGAAAAGTGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
77762214 AGTGAATAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
77762245 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
77762276 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
77762307 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
77762332 AAGTGACAAG
Statistics
Matches: 135, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 135 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:77762311 original size:93 final size:93
Alignment explanation
Indices: 77762152--77762331 Score: 333
Period size: 93 Copynumber: 1.9 Consensus size: 93
77762142 ACAAATGACA
*
77762152 AGTGAAAAGTGGTAGCTTTTGCTACCTAATCAGTGAAAAGTGGTAGCTCCGACTACCTGATCAGT
1 AGTGAAAAGTGGTAGCTTCTGCTACCTAATCAGTGAAAAGTGGTAGCTCCGACTACCTGATCAGT
77762217 GAATAGTGGTAGCTTCGGCTACCTGATC
66 GAATAGTGGTAGCTTCGGCTACCTGATC
* *
77762245 AGTGAAAAGTGGTAGCTTCTGCTACCTGATCAGTGAAAAGTGGTAGCTCCGGCTACCTGATCAGT
1 AGTGAAAAGTGGTAGCTTCTGCTACCTAATCAGTGAAAAGTGGTAGCTCCGACTACCTGATCAGT
77762310 GAATAGTGGTAGCTTCGGCTAC
66 GAATAGTGGTAGCTTCGGCTAC
77762332 AAGTGACAAG
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 84 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (93 bp):
AGTGAAAAGTGGTAGCTTCTGCTACCTAATCAGTGAAAAGTGGTAGCTCCGACTACCTGATCAGT
GAATAGTGGTAGCTTCGGCTACCTGATC
Found at i:77762509 original size:49 final size:48
Alignment explanation
Indices: 77762360--77762569 Score: 197
Period size: 47 Copynumber: 4.5 Consensus size: 48
77762350 GATTTTTGTA
* * * * * * *
77762360 TAAGACCATATCTGGGATATGGCATCG-GTGTGATATATG-CTACTATA
1 TAAGACCATAGCTGGGCTATGGCATCGAATGTGATATGTGATTA-TGTG
* * * * * *
77762407 TAAGACCATATCTGGGATATGACATC-AGTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGCTATGGCATCGAATGTGATATGTGATTATGTG
77762453 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-ATGTGATATGTGATTATGTG
*
77762502 TAAGACCATAGCTGGGCTATGGCATCG-A--T-ATA--TGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGAATGTGATATGTGATTATGTG
*
77762544 TAAGACCATAGCTGGGCTATGTCATC
1 TAAGACCATAGCTGGGCTATGGCATC
77762570 ATTATGTGAA
Statistics
Matches: 143, Mismatches: 15, Indels: 15
0.83 0.09 0.09
Matches are distributed among these distances:
42 34 0.24
44 3 0.02
45 1 0.01
46 24 0.17
47 37 0.26
48 14 0.10
49 30 0.21
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTGGGCTATGGCATCGAATGTGATATGTGATTATGTG
Found at i:77762545 original size:42 final size:42
Alignment explanation
Indices: 77762486--77762613 Score: 168
Period size: 42 Copynumber: 3.0 Consensus size: 42
77762476 ATCGATATGT
*
77762486 GATATGTGATTATGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
* *
77762528 GATATATGAATATGTGTAAGACCATAGCTGGGCTATGTCATC
1 GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
** * **
77762570 -ATTATGTGAAGCTGTGTAAGACCATAGTTGAACTATGGCATC
1 GA-TATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
77762612 GA
1 GA
77762614 GGAAATGAAG
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
41 1 0.01
42 72 0.97
43 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (42 bp):
GATATGTGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:77763367 original size:11 final size:13
Alignment explanation
Indices: 77763341--77763372 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
77763331 AAAATATAAT
77763341 ACAAAAAAAGATA
1 ACAAAAAAAGATA
77763354 ACAAAAAAA-A-A
1 ACAAAAAAAGATA
77763365 ACAAAAAA
1 ACAAAAAA
77763373 TCTAACCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 9 0.47
12 1 0.05
13 9 0.47
ACGTcount: A:0.84, C:0.09, G:0.03, T:0.03
Consensus pattern (13 bp):
ACAAAAAAAGATA
Found at i:77764055 original size:21 final size:22
Alignment explanation
Indices: 77764031--77764095 Score: 78
Period size: 21 Copynumber: 2.9 Consensus size: 22
77764021 TATATGACGT
77764031 ATATATTTTTTTAATATTA-TA
1 ATATATTTTTTTAATATTATTA
* *
77764052 ATATATTTATGTAATATTATTA
1 ATATATTTTTTTAATATTATTA
77764074 ATAAGTTATTTTTTTAATATTA
1 AT-A--TATTTTTTTAATATTA
77764096 ATAGTATTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 17 0.47
22 4 0.11
23 1 0.03
25 14 0.39
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (22 bp):
ATATATTTTTTTAATATTATTA
Found at i:77765860 original size:28 final size:28
Alignment explanation
Indices: 77765828--77765920 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
77765818 ATTTACTAGA
77765828 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
77765856 ATACCCCTATGTATACAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
* **
77765884 ATACCCCTATGTATGCAAAATGACTTTT
1 ATACCCCTATGTATGCAAAATTACCATT
77765912 ATACCCCTA
1 ATACCCCTA
77765921 GGGTTAATTT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:77766057 original size:28 final size:27
Alignment explanation
Indices: 77766024--77766095 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
77766014 CTGGTGGCTA
*
77766024 TGCCACAAATTATCTGTTCTAGTGGCCC
1 TGCCACAAA-TATCTGTTCTAGTGGCAC
* *
77766052 TGCCACATATATCTGTTCTGGTGGCAC
1 TGCCACAAATATCTGTTCTAGTGGCAC
77766079 TGCCACAAAATATCTGT
1 TGCCAC-AAATATCTGT
77766096 ATCTGGTGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTAGTGGCAC
Found at i:77766075 original size:27 final size:27
Alignment explanation
Indices: 77766014--77766103 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
77766004 AGGAAGCGTC
77766014 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * *
77766042 CTAGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
77766069 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
77766098 CTGGTG
1 CTGGTG
77766104 ACTCTGTCAT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:77766122 original size:55 final size:56
Alignment explanation
Indices: 77766014--77766128 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
77766004 AGGAAGCGTC
* *
77766014 CTGGTGGCTATGCCACAAATTATCTGTTCTAGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACATATATCTGTAT
* * * * *
77766069 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCATAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTAGTGACCCTGCCACATATATCTGTAT
77766125 CTGG
1 CTGG
77766129 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.60
56 19 0.38
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTAGTGACCCTGCCACATATATCTGTAT
Found at i:77767376 original size:19 final size:19
Alignment explanation
Indices: 77767341--77767390 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
77767331 TGTATATTTT
**
77767341 TATTTTT-TATTTTTTAT-
1 TATTTTTATATTAATTATA
77767358 TATTTTTATTATTAATTATA
1 TATTTTTA-TATTAATTATA
*
77767378 TGTTTTTATATTA
1 TATTTTTATATTA
77767391 TTTCATGTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 7 0.26
19 13 0.48
20 7 0.26
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (19 bp):
TATTTTTATATTAATTATA
Found at i:77767392 original size:22 final size:23
Alignment explanation
Indices: 77767360--77767415 Score: 80
Period size: 24 Copynumber: 2.5 Consensus size: 23
77767350 TTTTTTATTA
77767360 TTTT-TATTATTAAT-TATATGT
1 TTTTATATTATTAATGTATATGT
*
77767381 TTTTATATTATTTCATGTATATGT
1 TTTTATATTA-TTAATGTATATGT
77767405 TTTTATATTAT
1 TTTTATATTAT
77767416 CCTTATTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 4 0.13
22 5 0.16
23 5 0.16
24 17 0.55
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (23 bp):
TTTTATATTATTAATGTATATGT
Found at i:77767476 original size:25 final size:24
Alignment explanation
Indices: 77767441--77767491 Score: 84
Period size: 25 Copynumber: 2.1 Consensus size: 24
77767431 TAATCTTAAG
*
77767441 TATATGTTTTATTATATATATATA
1 TATATGTTTTAATATATATATATA
77767465 TATATGTCTTTAATATATATATATA
1 TATATGT-TTTAATATATATATATA
77767490 TA
1 TA
77767492 GGTATATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (24 bp):
TATATGTTTTAATATATATATATA
Found at i:77767788 original size:19 final size:20
Alignment explanation
Indices: 77767764--77767802 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
77767754 TACTTTAACA
77767764 TTACTA-GTTATATATATTT
1 TTACTACGTTATATATATTT
* *
77767783 TTACTACTTTATGTATATTT
1 TTACTACGTTATATATATTT
77767803 CAAATATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.28, C:0.08, G:0.05, T:0.59
Consensus pattern (20 bp):
TTACTACGTTATATATATTT
Found at i:77767822 original size:23 final size:23
Alignment explanation
Indices: 77767795--77767920 Score: 124
Period size: 23 Copynumber: 5.8 Consensus size: 23
77767785 ACTACTTTAT
77767795 GTATATTTCAAATATTATATATA
1 GTATATTTCAAATATTATATATA
* * *
77767818 GTATATTTCTAACATTAT-TACA
1 GTATATTTCAAATATTATATATA
* *
77767840 TGTATA--T-ATATATTATGTATA
1 -GTATATTTCAAATATTATATATA
77767861 GTATATTTC-AA-A-TATATAT-
1 GTATATTTCAAATATTATATATA
77767880 GTATATTTCAAATATTATATATA
1 GTATATTTCAAATATTATATATA
* *
77767903 GTATATTTCTAACATTAT
1 GTATATTTCAAATATTAT
77767921 TACTATTTAT
Statistics
Matches: 83, Mismatches: 11, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
19 9 0.11
20 19 0.23
21 6 0.07
22 12 0.14
23 37 0.45
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (23 bp):
GTATATTTCAAATATTATATATA
Found at i:77768793 original size:24 final size:25
Alignment explanation
Indices: 77768761--77768812 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
77768751 GCCTAGCCTC
* *
77768761 TTTTAAT-AACTGGGGCAATGCCCT
1 TTTTAATAAACTGGGGAAAAGCCCT
*
77768785 TTTTGATAAACTGGGGAAAAGCCCT
1 TTTTAATAAACTGGGGAAAAGCCCT
77768810 TTT
1 TTT
77768813 CGGTAAACTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (25 bp):
TTTTAATAAACTGGGGAAAAGCCCT
Found at i:77768796 original size:25 final size:25
Alignment explanation
Indices: 77768768--77768837 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
77768758 CTCTTTTAAT
*
77768768 AACTGGGGCAATGCCCTTTTTGATA
1 AACTGGGGCAATGCCCTTTTCGATA
* * *
77768793 AACTGGGGAAAAGCCCTTTTCGGTA
1 AACTGGGGCAATGCCCTTTTCGATA
*
77768818 AACTGAGGC-ATAGCCCTTTT
1 AACTGGGGCAAT-GCCCTTTT
77768838 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAATGCCCTTTTCGATA
Found at i:77769286 original size:27 final size:27
Alignment explanation
Indices: 77769041--77769286 Score: 332
Period size: 27 Copynumber: 9.1 Consensus size: 27
77769031 GGGCAAAATG
* * * *
77769041 GTAATTTTACCCTACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
77769068 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
77769094 GATATTTCTACCCTACAAGGGTATTTCT
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
77769122 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
77769149 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
77769176 GTAATTCAACCCTACAGGGTTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
77769203 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
77769230 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
77769257 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
77769284 GTA
1 GTA
77769287 TTTTACAAAT
Statistics
Matches: 192, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 190 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:77769302 original size:27 final size:27
Alignment explanation
Indices: 77769245--77769424 Score: 165
Period size: 27 Copynumber: 6.7 Consensus size: 27
77769235 TCTACCCTAT
* **
77769245 AGGGGTATTTTAGTAATTCTACCTTAC-
1 AGGGGTATTTTAGTAATTTTA-CAAACA
*
77769272 AGGGGTATTTCAGT-ATTTTACAAATCA
1 AGGGGTATTTTAGTAATTTTACAAA-CA
* *
77769299 A-GGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTAGTAATTTTACAAACA
*
77769325 AGGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTAGTAATTTTACAAACA
* * * *
77769352 AGGGGTGTTTTGGTAATTTTACTGATCA
1 AGGGGTATTTTAGTAATTTTAC-AAACA
* *
77769380 A-GGGTATTTTGGTAATTTTTA-AACCA
1 AGGGGTATTTTAGTAA-TTTTACAAACA
77769406 A-GGGTATTTTAGTAATTTT
1 AGGGGTATTTTAGTAATTTT
77769425 GTAAATCGAG
Statistics
Matches: 129, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
25 6 0.05
26 35 0.27
27 80 0.62
28 8 0.06
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (27 bp):
AGGGGTATTTTAGTAATTTTACAAACA
Found at i:77769364 original size:54 final size:54
Alignment explanation
Indices: 77769271--77769424 Score: 188
Period size: 54 Copynumber: 2.9 Consensus size: 54
77769261 TTCTACCTTA
* *
77769271 CAGGGGTATTTCAGT-ATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAA-
1 CAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAT
* * **
77769323 CTAGGGGTATTTTAGTAATTTTACAAACCAGGGGTGTTTTGGTAATTTTACTGAT
1 C-AGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAT
* * * *
77769378 CAAGGGTATTTTGGTAATTTT-TAAACCAAGGGTATTTTAGTAATTTT
1 CAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTT
77769425 GTAAATCGAG
Statistics
Matches: 87, Mismatches: 12, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
52 1 0.01
53 35 0.40
54 50 0.57
55 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (54 bp):
CAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAT
Found at i:77769437 original size:27 final size:27
Alignment explanation
Indices: 77769286--77769613 Score: 153
Period size: 27 Copynumber: 12.2 Consensus size: 27
77769276 GTATTTCAGT
*
77769286 ATTTTACAAATCAAGGGTATTTTGGTA
1 ATTTTATAAATCAAGGGTATTTTGGTA
* * *
77769313 ATTTTACAAA-CTAGGGGTATTTTAGTA
1 ATTTTATAAATC-AAGGGTATTTTGGTA
* * * *
77769340 ATTTTACAAACCAGGGGTGTTTTGGTA
1 ATTTTATAAATCAAGGGTATTTTGGTA
*
77769367 ATTTTACT-GATCAAGGGTATTTTGGTA
1 ATTTTA-TAAATCAAGGGTATTTTGGTA
* *
77769394 ATTTT-TAAACCAAGGGTATTTTAGTA
1 ATTTTATAAATCAAGGGTATTTTGGTA
* * ****
77769420 ATTTTGTAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCAAGGGTATTTTGGTA
* ** **** *
77769447 ATTTTGTAAATTGAGGGTAAAACGATA
1 ATTTTATAAATCAAGGGTATTTTGGTA
* * ***
77769474 ATTCTATAAATCGAGGGTAAAATGGTA
1 ATTTTATAAATCAAGGGTATTTTGGTA
* ****
77769501 ATTCTATAAATCGAA-GGTAAAACGGTA
1 ATTTTATAAATC-AAGGGTATTTTGGTA
* * ***
77769528 ATTTTGTAAATCGAGGGTA-AACGGTA
1 ATTTTATAAATCAAGGGTATTTTGGTA
* * * *
77769554 ATTCTATAAATCGAGGATATTTGGGTA
1 ATTTTATAAATCAAGGGTATTTTGGTA
* ** **
77769581 GTTTTATAAATCGGGGGTACGTTGGTA
1 ATTTTATAAATCAAGGGTATTTTGGTA
77769608 ATTTTA
1 ATTTTA
77769614 CAACTGGGGG
Statistics
Matches: 248, Mismatches: 45, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
25 1 0.00
26 46 0.19
27 199 0.80
28 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (27 bp):
ATTTTATAAATCAAGGGTATTTTGGTA
Found at i:77769484 original size:54 final size:54
Alignment explanation
Indices: 77769426--77769567 Score: 205
Period size: 54 Copynumber: 2.6 Consensus size: 54
77769416 AGTAATTTTG
* * * *
77769426 TAAATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAACGATAATTCTA
* * * *
77769480 TAAATCGAGGGTAAAATGGTAATTCTATAAATCGAAGGTAAAACGGTAATTTTG
1 TAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAACGATAATTCTA
77769534 TAAATCGAGGGT-AAACGGTAATTCTATAAATCGA
1 TAAATCGAGGGTAAAACGGTAATTCTATAAATCGA
77769568 GGATATTTGG
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
53 21 0.27
54 58 0.73
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
TAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTAAAACGATAATTCTA
Found at i:77769514 original size:81 final size:80
Alignment explanation
Indices: 77769417--77769569 Score: 252
Period size: 81 Copynumber: 1.9 Consensus size: 80
77769407 GGGTATTTTA
* * * *
77769417 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAACGATAATTCTATA
1 GTAATTCTATAAATCGAAGGTAAAACGGTAATTTTGTAAATCGAGGGT-AAACGATAATTCTATA
77769482 AATCGAGGGTAAAATG
65 AATCGAGGGTAAAATG
*
77769498 GTAATTCTATAAATCGAAGGTAAAACGGTAATTTTGTAAATCGAGGGTAAACGGTAATTCTATAA
1 GTAATTCTATAAATCGAAGGTAAAACGGTAATTTTGTAAATCGAGGGTAAACGATAATTCTATAA
77769563 ATCGAGG
66 ATCGAGG
77769570 ATATTTGGGT
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 23 0.34
81 44 0.66
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (80 bp):
GTAATTCTATAAATCGAAGGTAAAACGGTAATTTTGTAAATCGAGGGTAAACGATAATTCTATAA
ATCGAGGGTAAAATG
Found at i:77782620 original size:4 final size:4
Alignment explanation
Indices: 77782611--77782641 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
77782601 AAATAATAAT
77782611 AATA AATA AATA AATA AATA AATA AATA AAT
1 AATA AATA AATA AATA AATA AATA AATA AAT
77782642 CAACTCATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:77782737 original size:73 final size:74
Alignment explanation
Indices: 77782638--77782822 Score: 345
Period size: 73 Copynumber: 2.5 Consensus size: 74
77782628 ATAAATAAAT
*
77782638 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGTATTTTTAATTCCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGTATTTTTAATTCCTA
77782703 TTTTTC-AA
66 TTTTTCAAA
*
77782711 AAATCAACTCATAGTGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGTATTTTTAATTCCTA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGTATTTTTAATTCCTA
77782776 TTTTTCAAA
66 TTTTTCAAA
77782785 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
77782823 TGTAACACCC
Statistics
Matches: 108, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
73 69 0.64
74 39 0.36
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (74 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCATGCTGAGGTATTTTTAATTCCTA
TTTTTCAAA
Found at i:77783505 original size:6 final size:6
Alignment explanation
Indices: 77783487--77783685 Score: 187
Period size: 6 Copynumber: 32.8 Consensus size: 6
77783477 AACCAAAATG
*
77783487 AGAATC AGGATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* * * *
77783535 AGAATC A-ATATT AGTAA-C AAAATC AGAATC AGAATC AGAATT AG-GTGAC
1 AGAATC AGA-ATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C
* *
77783584 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* *
77783632 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
77783681 AGAAT
1 AGAAT
77783686 GTGAATACAA
Statistics
Matches: 159, Mismatches: 18, Indels: 32
0.76 0.09 0.15
Matches are distributed among these distances:
5 11 0.07
6 135 0.85
7 10 0.06
8 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:77783506 original size:36 final size:35
Alignment explanation
Indices: 77783466--77783648 Score: 112
Period size: 36 Copynumber: 5.2 Consensus size: 35
77783456 AAGAAACATT
* *
77783466 ATCAGAATTGGAACCAAAATGAGAATCAGGATCAGA
1 ATCAGAATTGGAA-CAAAATCAGAATCAGAATCAGA
** *
77783502 ATCAGTAA-CAGAATCAGAATCAGAATCAGAATCAGA
1 ATCAG-AATTGGAA-CAAAATCAGAATCAGAATCAGA
*
77783538 ATCA-ATATTAGTAACAAAATCAGAATCAGAATCAGA
1 ATCAGA-ATT-GGAACAAAATCAGAATCAGAATCAGA
* * *
77783574 ATTAG--GT-G-ACAGAATCAGAATCAGAATCAGTA
1 ATCAGAATTGGAACAAAATCAGAATCAGAATCAG-A
** * * *
77783606 A-CAGAATCAGAATCAGAATCAGTATTAGTAA-CAGA
1 ATCAGAATTGGAA-CAAAATCAGAATCAG-AATCAGA
77783641 ATCAGAAT
1 ATCAGAAT
77783649 CAGAATCAGA
Statistics
Matches: 115, Mismatches: 19, Indels: 26
0.72 0.12 0.16
Matches are distributed among these distances:
31 23 0.20
32 2 0.02
34 3 0.03
35 4 0.03
36 77 0.67
37 6 0.05
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (35 bp):
ATCAGAATTGGAACAAAATCAGAATCAGAATCAGA
Found at i:77783602 original size:85 final size:85
Alignment explanation
Indices: 77783498--77783685 Score: 326
Period size: 85 Copynumber: 2.2 Consensus size: 85
77783488 GAATCAGGAT
77783498 CAGAATCAGTAA-CAGAATCAG-AATCAGAATCAGAATCAGAATCAATATTAGTAACAAAATCAG
1 CAGAATCAG-AATCAGAATCAGTAA-CAGAATCAGAATCAGAATCAATATTAGTAACAAAATCAG
77783561 AATCAGAATCAGAATTAGGTGA
64 AATCAGAATCAGAATTAGGTGA
* *
77783583 CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAA
1 CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAAAATCAGAA
77783648 TCAGAATCAGAATTAGGTGA
66 TCAGAATCAGAATTAGGTGA
77783668 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
77783686 GTGAATACAA
Statistics
Matches: 99, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
84 2 0.02
85 95 0.96
86 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (85 bp):
CAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAAAATCAGAA
TCAGAATCAGAATTAGGTGA
Found at i:77783852 original size:27 final size:26
Alignment explanation
Indices: 77783803--77783876 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
77783793 AGCATGGCTG
* *
77783803 CCAGAACAGATATCGTGACAGAG-TCA
1 CCAGAACAGATATTGTGGCAGAGCT-A
*
77783829 CCAGATACAGATATTGTGGTAGAGCTA
1 CCAGA-ACAGATATTGTGGCAGAGCTA
*
77783856 CCAGAATCAGATAATGTGGCA
1 CCAGAA-CAGATATTGTGGCA
77783877 AACCCACCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 6 0.15
27 33 0.82
28 1 0.03
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCTA
Found at i:77784244 original size:27 final size:26
Alignment explanation
Indices: 77784165--77784247 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
77784155 TCAATCGGTC
* * *
77784165 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
77784191 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
77784218 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
77784245 AAC
1 AAC
77784248 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:77784641 original size:27 final size:27
Alignment explanation
Indices: 77784446--77784633 Score: 232
Period size: 27 Copynumber: 7.0 Consensus size: 27
77784436 GGGGCAAAAT
* * * *
77784446 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
77784473 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
77784500 GGTATTTCTACACTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
77784527 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
77784554 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
77784581 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
77784608 GGAAATTCTACCCTACAGGAGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
77784634 TAGTAATTTC
Statistics
Matches: 137, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:77785126 original size:27 final size:27
Alignment explanation
Indices: 77784651--77785109 Score: 633
Period size: 27 Copynumber: 17.0 Consensus size: 27
77784641 TTCACAATTA
77784651 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
77784678 AGGGTAAAACGATAATTTTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
* * * *
77784705 AGGGTAAACCAGTAATTTTGTAAATCA
1 AGGGTAAAACGGTAATTCTGTAAATCG
* **
77784732 AGGGTAAAACGGTAATTTTACAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
77784759 AGGGTGAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
77784786 AGGGTAAAACTGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
77784813 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* ** * *
77784840 AAGGTAAAATAGTAATTCTGTCAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCG
77784867 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
77784894 AGGGTAAAACGGTAATT-T-TACGAATCG
1 AGGGTAAAACGGTAATTCTGTA--AATCG
*
77784921 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
* *
77784948 ATGGTAAAACAGTAATTCTGTAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
77784975 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
*
77785002 AGGGTAAAACGGTAATTCTATAAA-CTG
1 AGGGTAAAACGGTAATTCTGTAAATC-G
*
77785029 AGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
77785056 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
77785083 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCG
77785110 GGAGTACTTT
Statistics
Matches: 383, Mismatches: 37, Indels: 24
0.86 0.08 0.05
Matches are distributed among these distances:
25 2 0.01
26 5 0.01
27 369 0.96
28 5 0.01
29 2 0.01
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.27
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTGTAAATCG
Found at i:77795031 original size:40 final size:40
Alignment explanation
Indices: 77794839--77795024 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
77794829 TCGAATGATG
* * *
77794839 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
77794879 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
77794919 TCCGGACTAAGAT-CCAAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77794959 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
77795000 -CCGGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77795025 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77795031 original size:80 final size:80
Alignment explanation
Indices: 77794839--77795047 Score: 232
Period size: 80 Copynumber: 2.6 Consensus size: 80
77794829 TCGAATGATG
* * **
77794839 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
77794903 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* * * *
77794919 TCCGGACTAAGAT-CCAAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
*
77794982 TTGTGCGAGTTACTATAA
64 TCGTGCGAGTTACTA-AA
**
77795000 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAA
77795048 ATTCCAAAGG
Statistics
Matches: 108, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
79 10 0.09
80 89 0.82
81 9 0.08
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:77800061 original size:9 final size:9
Alignment explanation
Indices: 77800047--77800123 Score: 100
Period size: 9 Copynumber: 8.6 Consensus size: 9
77800037 ATAAGTATAA
77800047 AATTAACCG
1 AATTAACCG
*
77800056 AATTAACTG
1 AATTAACCG
*
77800065 AATTAATCG
1 AATTAACCG
77800074 AATTAACCG
1 AATTAACCG
*
77800083 AATTACCCG
1 AATTAACCG
**
77800092 AATTGCCCG
1 AATTAACCG
*
77800101 AATTAACTG
1 AATTAACCG
77800110 AATTAACCG
1 AATTAACCG
77800119 AATTA
1 AATTA
77800124 TTTGTATAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 58 1.00
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:77800154 original size:6 final size:6
Alignment explanation
Indices: 77800143--77800201 Score: 91
Period size: 6 Copynumber: 9.5 Consensus size: 6
77800133 AATTATATGT
*
77800143 TTTTTA TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTTTTA
77800193 TTTTTA TTT
1 TTTTTA TTT
77800202 ATTAAATTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
6 40 0.82
7 8 0.16
8 1 0.02
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:77800177 original size:26 final size:26
Alignment explanation
Indices: 77800148--77800198 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
77800138 TATGTTTTTT
77800148 ATTTTTATTTTTATTTTTAGTTTTAG
1 ATTTTTATTTTTATTTTTAGTTTTAG
*
77800174 ATTTTTATTTTTATTTTTATTTTTA
1 ATTTTTATTTTTATTTTTAGTTTTA
77800199 TTTATTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (26 bp):
ATTTTTATTTTTATTTTTAGTTTTAG
Found at i:77804965 original size:45 final size:45
Alignment explanation
Indices: 77804877--77805038 Score: 195
Period size: 45 Copynumber: 3.6 Consensus size: 45
77804867 CCGGTATTTT
* * * *
77804877 GCCTGCTAGGCTCGAA-GTCCG-ATA-TCATTTCACCGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGACATTATA
* * * *
77804920 GCTTGCTAGGTTCGAAGGCCCGAATAGTATCTCACCTACATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGACATTATA
* * *
77804965 GCCTGCTAGGCTCAAAGGCCCAAATAGTATCTCACCGGCATCATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGACATTATA
77805010 GCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTA
77805039 CCGTACGATA
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
43 14 0.14
44 4 0.04
45 83 0.81
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGACATTATA
Found at i:77811733 original size:2 final size:2
Alignment explanation
Indices: 77811726--77811756 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
77811716 GAGACTAGTC
77811726 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
77811757 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:77815956 original size:20 final size:20
Alignment explanation
Indices: 77815931--77815968 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
77815921 GTTATAACAT
*
77815931 TTATACACATATGTTTCACA
1 TTATACACATATGATTCACA
*
77815951 TTATACACTTATGATTCA
1 TTATACACATATGATTCA
77815969 ATTCAAATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.18, G:0.05, T:0.42
Consensus pattern (20 bp):
TTATACACATATGATTCACA
Found at i:77819040 original size:71 final size:71
Alignment explanation
Indices: 77818954--77819114 Score: 313
Period size: 71 Copynumber: 2.3 Consensus size: 71
77818944 CGATTTGTCT
77818954 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
77819019 CTTTCA
66 CTTTCA
*
77819025 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
77819090 CTTTCA
66 CTTTCA
77819096 CGTAGCTCTCTTGTCTACA
1 CGTAGCTCTCTTGTCTACA
77819115 CGGGATACAT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 89 1.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
CTTTCA
Found at i:77819155 original size:71 final size:70
Alignment explanation
Indices: 77818954--77819151 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
77818944 CGATTTGTCT
* * * *
77818954 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAC
1 CGTAGCTCTCTTGTCTACACGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
77819019 CTTTCA
65 CTTTCA
* * * * *
77819025 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACACGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAC
77819090 CTTTCA
65 CTTTCA
* *
77819096 CGTAGCTCTCTTGTCTACACGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACACGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
77819152 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 94 0.79
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACACGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTACC
TTTCA
Found at i:77824216 original size:43 final size:43
Alignment explanation
Indices: 77824081--77824316 Score: 264
Period size: 43 Copynumber: 5.5 Consensus size: 43
77824071 CGCTTTTTTT
* * * * *
77824081 ACAAACGCCGCTAAAGACCATGACCTTTAGTGGCGCTTTT-CA
1 ACAAACGCCGCTAAAAATCATGACCTTTAGCGACGCTTTTCCC
* * * * **
77824123 AAAAACGTCGCTAAAGACCACAACCTTTAGCG--GCATTTTCCC
1 ACAAACGCCGCTAAAAATCATGACCTTTAGCGACGC-TTTTCCC
*
77824165 GA-AAACGCCGCTAAAAATCATGACCTTTAACGACGCTTTTCCC
1 -ACAAACGCCGCTAAAAATCATGACCTTTAGCGACGCTTTTCCC
*
77824208 ACAAACGCCGCTAAAAATCATGACCTTTAGCGACACTTTTCCC
1 ACAAACGCCGCTAAAAATCATGACCTTTAGCGACGCTTTTCCC
* * * * *
77824251 ACAAACGCCACTAAAAAACATGACTTTTAGCGGCGCTTTTCTC
1 ACAAACGCCGCTAAAAATCATGACCTTTAGCGACGCTTTTCCC
77824294 ACAAACGCCGCTAAAAATCATGA
1 ACAAACGCCGCTAAAAATCATGA
77824317 ACTTCAAAAA
Statistics
Matches: 166, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
40 2 0.01
41 4 0.02
42 53 0.32
43 105 0.63
44 2 0.01
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.22
Consensus pattern (43 bp):
ACAAACGCCGCTAAAAATCATGACCTTTAGCGACGCTTTTCCC
Found at i:77826102 original size:21 final size:22
Alignment explanation
Indices: 77826070--77826122 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
77826060 CAACTTTCAG
77826070 ACACCATAAA-TTGCAGCATTTA
1 ACACC-TAAATTTGCAGCATTTA
* *
77826092 ACACCTAAATTTTCAGTATTTA
1 ACACCTAAATTTGCAGCATTTA
*
77826114 ACACATAAA
1 ACACCTAAA
77826123 ATGGTTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (22 bp):
ACACCTAAATTTGCAGCATTTA
Found at i:77827909 original size:17 final size:17
Alignment explanation
Indices: 77827887--77827923 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
77827877 AAAAATCTGT
77827887 GAAGCTTTATGTGACTA
1 GAAGCTTTATGTGACTA
77827904 GAAGCTTTATGTGACTA
1 GAAGCTTTATGTGACTA
77827921 GAA
1 GAA
77827924 ACTCCATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.32
Consensus pattern (17 bp):
GAAGCTTTATGTGACTA
Found at i:77828273 original size:6 final size:6
Alignment explanation
Indices: 77828264--77828294 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
77828254 TTTCAAAACC
*
77828264 AAAGGG AAAGGG AAAGGG AAAGGG GAAGGG A
1 AAAGGG AAAGGG AAAGGG AAAGGG AAAGGG A
77828295 TCGTATGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (6 bp):
AAAGGG
Found at i:77828520 original size:40 final size:40
Alignment explanation
Indices: 77828442--77828520 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
77828432 AAATGATTGT
* *
77828442 TTGTGGCGTTTTTTTTAAAAACGCCACTATTGCTTATTTC
1 TTGTGGCGTTTTTTATAAAAACGCCACTAATGCTTATTTC
*
77828482 TTGTGGCGTTTTTTATATAAACGCCACTAAT-CTCTATTT
1 TTGTGGCGTTTTTTATAAAAACGCCACTAATGCT-TATTT
77828521 TATACATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 2 0.06
40 33 0.94
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.47
Consensus pattern (40 bp):
TTGTGGCGTTTTTTATAAAAACGCCACTAATGCTTATTTC
Found at i:77828559 original size:7 final size:6
Alignment explanation
Indices: 77828526--77828559 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
77828516 TATTTTATAC
77828526 ATTTTT ATTTTT ATATTTT ATTTTT ATTTATT AT
1 ATTTTT ATTTTT AT-TTTT ATTTTT ATTT-TT AT
77828560 CAATGTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.62
7 10 0.38
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (6 bp):
ATTTTT
Found at i:77828559 original size:13 final size:12
Alignment explanation
Indices: 77828526--77828559 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
77828516 TATTTTATAC
77828526 ATTTTTATTTTT
1 ATTTTTATTTTT
77828538 ATATTTTATTTTT
1 AT-TTTTATTTTT
77828551 ATTTATTAT
1 ATTT-TTAT
77828560 CAATGTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
ATTTTTATTTTT
Found at i:77828568 original size:19 final size:20
Alignment explanation
Indices: 77828546--77828590 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
77828536 TTATATTTTA
77828546 TTTTTATTTA-TTATCAATG
1 TTTTTATTTATTTATCAATG
*
77828565 TTTTTATTTATTTATCAATT
1 TTTTTATTTATTTATCAATG
77828585 TTTTTA
1 TTTTTA
77828591 AATCTAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 10 0.42
20 14 0.58
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTTATTTATTTATCAATG
Found at i:77828569 original size:20 final size:19
Alignment explanation
Indices: 77828546--77828588 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
77828536 TTATATTTTA
77828546 TTTTTATTTA-TTATCAAT
1 TTTTTATTTATTTATCAAT
77828564 GTTTTTATTTATTTATCAAT
1 -TTTTTATTTATTTATCAAT
77828584 TTTTT
1 TTTTT
77828589 TAAATCTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTTATTTATTTATCAAT
Found at i:77829025 original size:15 final size:14
Alignment explanation
Indices: 77829006--77829068 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
77828996 CCATGGCCAT
77829006 TAAACCTTAAACCA
1 TAAACCTTAAACCA
*
77829020 TAAAACCTTAAATCA
1 T-AAACCTTAAACCA
* * *
77829035 TAGACCTTAAATCT
1 TAAACCTTAAACCA
** *
77829049 TAAATATTAAACCC
1 TAAACCTTAAACCA
77829063 TAAACC
1 TAAACC
77829069 CAAAAATAAA
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
14 25 0.66
15 13 0.34
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.27
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:77829041 original size:14 final size:15
Alignment explanation
Indices: 77829007--77829052 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
77828997 CATGGCCATT
*
77829007 AAACCTTAAACCATA
1 AAACCTTAAATCATA
77829022 AAACCTTAAATCAT-
1 AAACCTTAAATCATA
* *
77829036 AGACCTTAAATCTTA
1 AAACCTTAAATCATA
77829051 AA
1 AA
77829053 TATTAAACCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.50, C:0.22, G:0.02, T:0.26
Consensus pattern (15 bp):
AAACCTTAAATCATA
Found at i:77829255 original size:15 final size:16
Alignment explanation
Indices: 77829229--77829262 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
77829219 GTTTGATTAG
77829229 GTTTAGGGGTTTAAGA
1 GTTTAGGGGTTTAAGA
*
77829245 GTTTA-GGGTTTTAGA
1 GTTTAGGGGTTTAAGA
77829260 GTT
1 GTT
77829263 AATTTGATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.21, C:0.00, G:0.35, T:0.44
Consensus pattern (16 bp):
GTTTAGGGGTTTAAGA
Found at i:77829571 original size:16 final size:15
Alignment explanation
Indices: 77829525--77829575 Score: 59
Period size: 17 Copynumber: 3.2 Consensus size: 15
77829515 AGGGGTTATA
77829525 GTTTAGTGTTTAGGG
1 GTTTAGTGTTTAGGG
77829540 GTCTTTAG-GATTTAGGG
1 G--TTTAGTG-TTTAGGG
77829557 GTTTAGTGTTTTAGGG
1 GTTTAGTG-TTTAGGG
77829573 GTT
1 GTT
77829576 ATAGATTAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
15 6 0.19
16 12 0.39
17 13 0.42
ACGTcount: A:0.14, C:0.02, G:0.37, T:0.47
Consensus pattern (15 bp):
GTTTAGTGTTTAGGG
Found at i:77829694 original size:41 final size:41
Alignment explanation
Indices: 77829630--77829951 Score: 321
Period size: 41 Copynumber: 7.9 Consensus size: 41
77829620 ATTATATGAC
* * * * *
77829630 TTTTAACGGCGTTTTATCGAAAGCGCTGCTAATACTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
77829671 TTTTAGCGGCTTTTTACCAAAAGCGCCGCTAATGCTATGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
77829712 TTTTAGCGGAGTTTTACCAAAAGTGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
77829753 TTTTAGCGGCGTTTTACCAAAAGCACCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * * *
77829794 TTTTAGTGGCGTTTCACCAAAAACGCCGCTAATGCTCTAGTT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GGT
*** * * *
77829836 TTTTA-CGGCGTTTTTGGTAAAA-CGCCGCTATTTCTCT-AT
1 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTCTGGT
* * ** * *
77829875 TTTTAGCGGCGTTTTATCAAAAACATCGTTATTGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
77829915 TTTTAGCGGCGTTTTACAAAAAACGCCGC-AATTGCTC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAA-TGCTC
77829952 CGTGTTTTAT
Statistics
Matches: 233, Mismatches: 43, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
39 15 0.06
40 46 0.20
41 158 0.68
42 14 0.06
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:77830485 original size:43 final size:43
Alignment explanation
Indices: 77830428--77830541 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 43
77830418 ATTCACCGGT
*
77830428 ATTAT-GCCTGCTAGGCTCGAAGCAC-GATATTAACTCACCAGC
1 ATTATAGCCTGCTAGGCTCGAAGC-CTGATATTAAATCACCAGC
** *
77830470 ATTATAGCCTGCTAGGCTTAAAGCCTGATATTAAATCACCGGC
1 ATTATAGCCTGCTAGGCTCGAAGCCTGATATTAAATCACCAGC
*
77830513 ATTATAGCCTACTAGGCTCGAAAGCCTGA
1 ATTATAGCCTGCTAGGCTCG-AAGCCTGA
77830542 ATAGCACTGT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 6 0.10
43 48 0.77
44 8 0.13
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
ATTATAGCCTGCTAGGCTCGAAGCCTGATATTAAATCACCAGC
Found at i:77837196 original size:43 final size:43
Alignment explanation
Indices: 77837147--77837255 Score: 173
Period size: 43 Copynumber: 2.5 Consensus size: 43
77837137 CCGATATTAC
*
77837147 GCCTGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGCCCGATATTAAATCACCGGCATTATA
** *
77837190 GCCTGCTAGGCTTAAAGGCCGATATTAAATCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGCCCGATATTAAATCACCGGCATTATA
77837233 GCCTGCTAGGCTCGAAGGCCCGA
1 GCCTGCTAGGCTCGAA-GCCCGA
77837256 ATAGCACTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
43 53 0.91
44 5 0.09
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (43 bp):
GCCTGCTAGGCTCGAAGCCCGATATTAAATCACCGGCATTATA
Found at i:77843883 original size:13 final size:14
Alignment explanation
Indices: 77843867--77843895 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
77843857 TTTTAAATAT
77843867 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
77843880 TTATAATGGTTTAA
1 TTATAATGGTTTAA
77843894 TT
1 TT
77843896 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:77854610 original size:43 final size:43
Alignment explanation
Indices: 77854554--77854673 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 43
77854544 GCGTTCATGT
* *
77854554 AAAAGCG-CTGCTAAAGGTCATGCTCTTTAGCGGCATTTGTATG
1 AAAAGCGAC-GCTAAAGGTCACGTTCTTTAGCGGCATTTGTATG
* ** *
77854597 AAAAGC-ATCGCTAAAGGTCACGTTCTTTAGCAGTGTTTGTGTG
1 AAAAGCGA-CGCTAAAGGTCACGTTCTTTAGCGGCATTTGTATG
* *
77854640 AAAGGCGACACTAAAGGTCACGTTCTTTAGCGGC
1 AAAAGCGACGCTAAAGGTCACGTTCTTTAGCGGC
77854674 GCTTTCTCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
43 62 0.97
44 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (43 bp):
AAAAGCGACGCTAAAGGTCACGTTCTTTAGCGGCATTTGTATG
Found at i:77861809 original size:43 final size:42
Alignment explanation
Indices: 77861749--77861861 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 42
77861739 TACCATACCA
* * *
77861749 ATGCCATATCCCAGATATGGTCTTACATG-GGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATCG
* *
77861791 ATGCCAATAGCCCAGATATGGTCTTACACGAAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
77861834 AGGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
77861862 ATAGTCTTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 27 0.44
43 34 0.55
44 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:77861868 original size:42 final size:42
Alignment explanation
Indices: 77861751--77861868 Score: 134
Period size: 42 Copynumber: 2.8 Consensus size: 42
77861741 CCATACCAAT
* * *
77861751 GCCATATCCCAGATATGGTCTT--ACATGGGATCTCGTATCGAT
1 GCCATATCCCAGATATGGTCTTACACAT-AG-TCTCATATCGAG
* *
77861793 GCCAATAGCCCAGATATGGTCTTACACGA-AGTCTCATATTGAG
1 GCC-ATATCCCAGATATGGTCTTACAC-ATAGTCTCATATCGAG
77861836 GCCATATCCCAGATATGGTCTTACACATAGTCT
1 GCCATATCCCAGATATGGTCTTACACATAGTCT
77861869 TAGTAACCCT
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
41 1 0.02
42 30 0.46
43 30 0.46
44 1 0.02
45 2 0.03
46 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTACACATAGTCTCATATCGAG
Done.