Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 258 of 335
Found at i:78202430 original size:27 final size:27
Alignment explanation
Indices: 78202400--78202657 Score: 227
Period size: 27 Copynumber: 9.6 Consensus size: 27
78202390 TGTAGGGTAG
* **
78202400 AATTACCAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
*
78202427 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
78202454 AATTACCAAAATACCCCTGATTTGTGA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
78202481 AATTACCGAAATACCCTCGATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
78202508 AGTTACCAAAATACCCCTGATTTGGAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * * *
78202535 AAGTACCGAAATACCCTTAATTTGGAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
78202562 AATTA-TAGAATACCCTTGACTTTCG-AA
1 AATTACCAAAATACCCTTGA-TTT-GTAA
* * * *
78202589 AATTA-TAGAAATACCATTGGTTTGCAA
1 AATTACCA-AAATACCCTTGATTTGTAA
* * *
78202616 AATTACTAAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGATTTGTAA
*
78202643 ATTTACCAAAATACC
1 AATTACCAAAATACC
78202658 TTTGTAGGAT
Statistics
Matches: 192, Mismatches: 32, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
26 11 0.06
27 168 0.88
28 13 0.07
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:78202756 original size:27 final size:27
Alignment explanation
Indices: 78202669--78202756 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
78202659 TTGTAGGATG
* * *
78202669 AAATGACTGAAATACCCCT-AATAGGTA
1 AAATGACCGTAATACCCCTGTAT-GGTA
* * *
78202696 AAAAGACCGTAATGCCCCTGTAGGGTA
1 AAATGACCGTAATACCCCTGTATGGTA
*
78202723 AAGTGACCGTAATACCCCTGTATGGTA
1 AAATGACCGTAATACCCCTGTATGGTA
78202750 AAATGAC
1 AAATGAC
78202757 GATTATGCCC
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AAATGACCGTAATACCCCTGTATGGTA
Found at i:78202989 original size:27 final size:27
Alignment explanation
Indices: 78202897--78202992 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 27
78202887 GGAAGTTCTG
* * * *
78202897 TACTGGTGACTATGTCACATTCACTGT
1 TACTGGTGGCTTTGCCACATTTACTGT
* * *
78202924 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTTTGCCACATTTACTGT
78202951 TACTGGTGGCTTTGCCACATTTACTGT
1 TACTGGTGGCTTTGCCACATTTACTGT
* * *
78202978 TTCTAGTAGCTTTGC
1 TACTGGTGGCTTTGC
78202993 TGCGATATTG
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.38
Consensus pattern (27 bp):
TACTGGTGGCTTTGCCACATTTACTGT
Found at i:78203189 original size:33 final size:33
Alignment explanation
Indices: 78203141--78203215 Score: 105
Period size: 33 Copynumber: 2.3 Consensus size: 33
78203131 TTAAGTCCAC
* * * *
78203141 ACTGCTACTGTATAGGGCTTAGTCCCAGACTGT
1 ACTGATACTGAATAGGGCTTAGGCCCAGACTAT
*
78203174 ACTGATACTGAATAGGGCTTTGGCCCAGACTAT
1 ACTGATACTGAATAGGGCTTAGGCCCAGACTAT
78203207 ACTGATACT
1 ACTGATACT
78203216 ATGTTATTCA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (33 bp):
ACTGATACTGAATAGGGCTTAGGCCCAGACTAT
Found at i:78206357 original size:46 final size:45
Alignment explanation
Indices: 78206274--78206443 Score: 139
Period size: 47 Copynumber: 3.7 Consensus size: 45
78206264 GATAAGGGTT
* **
78206274 AGTGTAAGACATGTCT-GAGACAT-GCAACGGCTTCGAGACATAAGCC
1 AGTGTAAGACATGTCTAG-GACATGGCATCAAC-TCGAGACAT-AGCC
* * *
78206320 AGTGTATGACATGTCTAGGACAT-GCATCAACTACGAGATGATAGTC
1 AGTGTAAGACATGTCTAGGACATGGCATCAACT-CGAGA-CATAGCC
* * * *
78206366 AGTGTAAGTCCATGTCTGGGACATGGCATCAACTTGAGATATGAGCC
1 AGTGTAAG-ACATGTCTAGGACATGGCATCAACTCGAGACAT-AGCC
* *
78206413 AGTATAAGACGGTGTCTAGGACATGGCATCA
1 AGTGTAAGAC-ATGTCTAGGACATGGCATCA
78206444 GTACCTTACC
Statistics
Matches: 101, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
45 1 0.01
46 43 0.43
47 48 0.48
48 9 0.09
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTAGGACATGGCATCAACTCGAGACATAGCC
Found at i:78206382 original size:93 final size:94
Alignment explanation
Indices: 78206274--78206443 Score: 211
Period size: 93 Copynumber: 1.8 Consensus size: 94
78206264 GATAAGGGTT
** * *
78206274 AGTGTAAGACATGTCTGAGACAT-GCAACGGCTTCGAGACATAAGCCAGTGTATGAC-ATGTCTA
1 AGTGTAAGACATGTCTGAGACATGGCAACAACTT-GAGACATAAGCCAGTATAAGACGATGTCTA
78206337 GGACAT-GCATCAACTACGAGATGATAGTC
65 GGACATGGCATCAACTACGAGATGATAGTC
* * * * * *
78206366 AGTGTAAGTCCATGTCTGGGACATGGCATCAACTTGAGATATGAGCCAGTATAAGACGGTGTCTA
1 AGTGTAAG-ACATGTCTGAGACATGGCAACAACTTGAGACATAAGCCAGTATAAGACGATGTCTA
78206431 GGACATGGCATCA
65 GGACATGGCATCA
78206444 GTACCTTACC
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
92 8 0.12
93 31 0.48
94 19 0.30
95 6 0.09
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGAGACATGGCAACAACTTGAGACATAAGCCAGTATAAGACGATGTCTAG
GACATGGCATCAACTACGAGATGATAGTC
Found at i:78209644 original size:11 final size:10
Alignment explanation
Indices: 78209618--78209651 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
78209608 GGAGAGCACC
*
78209618 AAGAGTCAAA
1 AAGAGCCAAA
78209628 AAGAGCCAAA
1 AAGAGCCAAA
78209638 AACGAGCCAAA
1 AA-GAGCCAAA
78209649 AAG
1 AAG
78209652 GGACAAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.59, C:0.18, G:0.21, T:0.03
Consensus pattern (10 bp):
AAGAGCCAAA
Found at i:78214017 original size:13 final size:13
Alignment explanation
Indices: 78213999--78214023 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78213989 AATGAAGCTA
78213999 GACACGGTCGTGC
1 GACACGGTCGTGC
78214012 GACACGGTCGTG
1 GACACGGTCGTG
78214024 TGAACCAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.40, T:0.16
Consensus pattern (13 bp):
GACACGGTCGTGC
Found at i:78215975 original size:8 final size:7
Alignment explanation
Indices: 78215948--78215973 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
78215938 TTGAAACTAC
78215948 TTTTTAT
1 TTTTTAT
78215955 TTTTTAT
1 TTTTTAT
78215962 TTTTTAT
1 TTTTTAT
78215969 TTTTT
1 TTTTT
78215974 TAGATTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:78227089 original size:28 final size:28
Alignment explanation
Indices: 78227020--78227120 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
78227010 GACAAGATTG
* * * *
78227020 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
78227050 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
78227078 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
78227107 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
78227121 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:78227114 original size:29 final size:28
Alignment explanation
Indices: 78227049--78227120 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
78227039 AAAATTGTAC
*
78227049 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
78227077 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
78227106 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
78227121 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:78231718 original size:11 final size:11
Alignment explanation
Indices: 78231682--78231737 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
78231672 CATGGTATGT
78231682 ATGATATGCAC
1 ATGATATGCAC
* *
78231693 ATGACATG--T
1 ATGATATGCAC
78231702 ATGATATGCAC
1 ATGATATGCAC
*
78231713 ATGATATG--T
1 ATGATATGCAC
78231722 ATGATATGCAC
1 ATGATATGCAC
78231733 ATGAT
1 ATGAT
78231738 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:78231737 original size:20 final size:20
Alignment explanation
Indices: 78231671--78231737 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
78231661 ATTTTGATAA
*
78231671 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
78231691 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
78231711 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
78231731 ACATGAT
1 ACATGAT
78231738 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:78231841 original size:23 final size:24
Alignment explanation
Indices: 78231787--78231950 Score: 237
Period size: 24 Copynumber: 7.0 Consensus size: 24
78231777 GATGAAGTGC
*
78231787 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
78231811 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
* *
78231834 AAAAGGGCTTAT-TCCCAGTTACT
1 AAAAGGGCTTATGCCCCAGTTATT
78231857 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
78231881 AAAAGGGC-TATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
78231904 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
78231928 AAAAGAGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCC-CCAGTTAT
78231951 ATGATAAAGC
Statistics
Matches: 128, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
22 8 0.06
23 52 0.41
24 68 0.53
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:78231884 original size:47 final size:47
Alignment explanation
Indices: 78231787--78231951 Score: 230
Period size: 47 Copynumber: 3.5 Consensus size: 47
78231777 GATGAAGTGC
78231787 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATT
*
78231834 AAAAGGGCTTAT-TCCCAGTTACTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTATT
*
78231881 AAAAGGGC-TATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTATT
* *
78231928 AAAAGAGC-TAGGCCTCCAGTTATA
1 AAAAGGGCTTATGCC-CCAGTTATA
78231952 TGATAAAGCA
Statistics
Matches: 108, Mismatches: 6, Indels: 8
0.89 0.05 0.07
Matches are distributed among these distances:
46 33 0.31
47 68 0.63
48 7 0.06
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
Found at i:78235048 original size:356 final size:356
Alignment explanation
Indices: 78234395--78235082 Score: 1196
Period size: 356 Copynumber: 1.9 Consensus size: 356
78234385 GTATAAATTT
** * * * *
78234395 AGGGATGTCCAACCACGGAGAGGAGGTTCACCTCTACAGAGGGGTCGTGGGCAAGGTAGAGGTGG
1 AGGGATGTCCAACCACGGAGAGGAGGACCACCACCACAGAGGGGTCGTAGGCAAAGTAGAGGTGG
*
78234460 CAATGGTAATGGACAAGGACGTGGGGCACCTGGCAGGGGTGCTGGACACGCTGAAGCTTGACAAC
66 CAATGGTAATGGACAAGGACGTGGGGCACCTGGCAGGGGTGCTGGACACGCTGAAGCTCGACAAC
* * * * *
78234525 CGGCGTTGGTTTATGCTGCACGATGTTGTGAGGAGGGTGACGCTCCTGATGTTATAACTGGTACG
131 CGACATTGGTTTATGCTACACGACGTCGTGAGGAGGGTGACGCTCCTGATGTTATAACTGGTACG
78234590 TTCCTCATTCATAGCACGCCTTACACTGCTTTGATTGATGTGGGTTCCACTCACTCGTATGTTGC
196 TTCCTCATTCATAGCACGCCTTACACTGCTTTGATTGATGTGGGTTCCACTCACTCGTATGTTGC
* *
78234655 TTTTGATGTATCTGAGGCTTTGGATGTGCTTCCTGAGGAGACTGTGAGTGGGGTATCGGTGATAA
261 TTGTGATGTATCTGAGGCTTTGGATGTGCTTCCTGAGGAGACTGTGAGTAGGGTATCGGTGATAA
78234720 GCCCTTTTCTCTGCAGCTAGCTGCAAAGCAA
326 GCCCTTTTCTCTGCAGCTAGCTGCAAAGCAA
* *
78234751 AGGGATGTCCAACCAGGGCGAGGAGGACCACCACCACAGAGGGGTCGTAGGCAAAGTAGAGGTGG
1 AGGGATGTCCAACCACGGAGAGGAGGACCACCACCACAGAGGGGTCGTAGGCAAAGTAGAGGTGG
* *
78234816 CAATGGTAATGGACGAGGGCGTGGGGCACCTGGCAGGGGTGCTGGACACGCTGAAGCTCGACAAC
66 CAATGGTAATGGACAAGGACGTGGGGCACCTGGCAGGGGTGCTGGACACGCTGAAGCTCGACAAC
78234881 CGACATTGGTTTATGCTACACGACGTCGTGAGGAGGGTGACGCTCCTGATGTTATAACTGGTACG
131 CGACATTGGTTTATGCTACACGACGTCGTGAGGAGGGTGACGCTCCTGATGTTATAACTGGTACG
78234946 TTCCTCATTCATAGCACGCCTTACACTGCTTTGATTGATGTGGGTTCCACTCACTCGTATGTTGC
196 TTCCTCATTCATAGCACGCCTTACACTGCTTTGATTGATGTGGGTTCCACTCACTCGTATGTTGC
* *
78235011 TTGTGATGTATCTGGGGCTTTGGATGTGCTTCCTGAGGAGACTGTTAGTAGGGTATCGGTGATAA
261 TTGTGATGTATCTGAGGCTTTGGATGTGCTTCCTGAGGAGACTGTGAGTAGGGTATCGGTGATAA
78235076 GCCCTTT
326 GCCCTTT
78235083 GGGACATTCG
Statistics
Matches: 312, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
356 312 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (356 bp):
AGGGATGTCCAACCACGGAGAGGAGGACCACCACCACAGAGGGGTCGTAGGCAAAGTAGAGGTGG
CAATGGTAATGGACAAGGACGTGGGGCACCTGGCAGGGGTGCTGGACACGCTGAAGCTCGACAAC
CGACATTGGTTTATGCTACACGACGTCGTGAGGAGGGTGACGCTCCTGATGTTATAACTGGTACG
TTCCTCATTCATAGCACGCCTTACACTGCTTTGATTGATGTGGGTTCCACTCACTCGTATGTTGC
TTGTGATGTATCTGAGGCTTTGGATGTGCTTCCTGAGGAGACTGTGAGTAGGGTATCGGTGATAA
GCCCTTTTCTCTGCAGCTAGCTGCAAAGCAA
Found at i:78240253 original size:25 final size:25
Alignment explanation
Indices: 78240224--78240273 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
78240214 CCTTATAACA
* *
78240224 TGAAAATGACCATTTTGCCCCTAGG
1 TGAAAATGACCATTATACCCCTAGG
78240249 TGAAAATGACCATTATACCCCTAGG
1 TGAAAATGACCATTATACCCCTAGG
78240274 GTTTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (25 bp):
TGAAAATGACCATTATACCCCTAGG
Found at i:78240340 original size:20 final size:20
Alignment explanation
Indices: 78240317--78240376 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
78240307 TAAACATGGT
78240317 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
78240337 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
78240357 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
78240377 GTATTCATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:78240357 original size:11 final size:11
Alignment explanation
Indices: 78240321--78240375 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
78240311 CATGGTATGT
78240321 ATGATATGCAC
1 ATGATATGCAC
* *
78240332 ATGACATG--T
1 ATGATATGCAC
78240341 ATGATATGCAC
1 ATGATATGCAC
*
78240352 ATGATATG--T
1 ATGATATGCAC
78240361 ATGATATGCAC
1 ATGATATGCAC
78240372 ATGA
1 ATGA
78240376 CGTATTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:78240452 original size:24 final size:24
Alignment explanation
Indices: 78240425--78240597 Score: 269
Period size: 24 Copynumber: 7.2 Consensus size: 24
78240415 GGAGGAAGTG
78240425 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
78240449 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
78240473 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
78240497 -AAAAGGGCTTATTCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
78240519 CTAAAAGGGCTTATGCCCCAGTTTT
1 C-AAAAGGGCTTATGCCCCAGTTAT
*
78240544 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
78240568 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
78240592 TAAAAG
1 CAAAAG
78240598 AGACTAGGCC
Statistics
Matches: 140, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
23 21 0.15
24 119 0.85
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:78240549 original size:71 final size:71
Alignment explanation
Indices: 78240426--78240597 Score: 267
Period size: 71 Copynumber: 2.4 Consensus size: 71
78240416 GAGGAAGTGC
*
78240426 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATTCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
78240491 AGTTA-T
65 AGTTATT
* *
78240497 AAAAGGGCTTATTCCCCAGTTACTAAAAGGGCTTATGCCCCAGTTTTTAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATTCCCCAGTTA-TAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
78240562 AGTTATT
65 AGTTATT
78240569 AAAAGGGCTT-TTGCCCCAGTTATTAAAAG
1 AAAAGGGCTTATT-CCCCAGTTA-TAAAAG
78240598 AGACTAGGCC
Statistics
Matches: 94, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
71 67 0.71
72 27 0.29
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTATTCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATT
Found at i:78245429 original size:28 final size:27
Alignment explanation
Indices: 78245366--78245435 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
78245356 ATAGTGAGTC
78245366 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
78245393 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
78245421 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78245436 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:78250694 original size:2 final size:2
Alignment explanation
Indices: 78250687--78250713 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
78250677 CCGAAAATAG
78250687 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
78250714 CTTGTTACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:78252158 original size:40 final size:39
Alignment explanation
Indices: 78252104--78252187 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 39
78252094 TAACGGCTTA
* **
78252104 TCGGCTAAAATGGCACTTAGTGTGCGGTTCGAAATAGCT
1 TCGGCCAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
* * *
78252143 TCGGCCAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCCAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCT
78252183 TCGGC
1 TCGGC
78252188 TATATTTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
39 9 0.24
40 29 0.76
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (39 bp):
TCGGCCAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:78256086 original size:28 final size:28
Alignment explanation
Indices: 78256021--78256121 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
78256011 ATAGTGAATC
*
78256021 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
78256050 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
78256078 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
78256108 CGCACACTTAGTGC
1 CGCACACTTAGTGC
78256122 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:78264029 original size:26 final size:27
Alignment explanation
Indices: 78263966--78264035 Score: 90
Period size: 26 Copynumber: 2.6 Consensus size: 27
78263956 ATAGTGAATC
*
78263966 CGCACACTTAGTGCTATATGTATTCAGCT
1 CGCACACTTAGTGCTATA-GTA-TCAACT
78263995 CGCACACTTAGTGCTATA-TA-CAAACT
1 CGCACACTTAGTGCTATAGTATC-AACT
78264021 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78264036 GTACAATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
25 1 0.03
26 18 0.46
27 2 0.05
29 18 0.46
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAGTATCAACT
Found at i:78267672 original size:28 final size:28
Alignment explanation
Indices: 78267626--78267694 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
78267616 TTTAAAACCC
*
78267626 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
78267653 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
78267681 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
78267695 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:78269344 original size:20 final size:20
Alignment explanation
Indices: 78269321--78269358 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
78269311 CACATCCAAA
*
78269321 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
78269341 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
78269359 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:78273954 original size:12 final size:12
Alignment explanation
Indices: 78273937--78273967 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
78273927 AGTGCTACCT
78273937 CGGCCTCGACCA
1 CGGCCTCGACCA
78273949 CGGCCTCGACCA
1 CGGCCTCGACCA
78273961 CGGCCTC
1 CGGCCTC
78273968 TTCCTCGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.52, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:78275677 original size:28 final size:28
Alignment explanation
Indices: 78275645--78275701 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
78275635 TAGGGTATAT
78275645 GGTAATTTTGCTCTTTAGGGGTAATTTC
1 GGTAATTTTGCTCTTTAGGGGTAATTTC
78275673 GGTAATTTTGCTCTTTAGGGGTAATTTC
1 GGTAATTTTGCTCTTTAGGGGTAATTTC
78275701 G
1 G
78275702 TGATCTACGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.18, C:0.11, G:0.26, T:0.46
Consensus pattern (28 bp):
GGTAATTTTGCTCTTTAGGGGTAATTTC
Found at i:78277346 original size:20 final size:20
Alignment explanation
Indices: 78277323--78277360 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
78277313 CACATCCAAA
*
78277323 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
78277343 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
78277361 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:78282922 original size:2 final size:2
Alignment explanation
Indices: 78282915--78282950 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
78282905 TTAAGTAGGT
78282915 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
78282951 GTATCATTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:78288412 original size:39 final size:39
Alignment explanation
Indices: 78288354--78288459 Score: 194
Period size: 39 Copynumber: 2.7 Consensus size: 39
78288344 TATATTACCA
*
78288354 GCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCT
1 GCGGGACTTTAGCCCGGATACATTTCCAACACGAAGCCT
*
78288393 GCGGGACTTTAGCCTGGATACATTTCCAACACGAAGCCT
1 GCGGGACTTTAGCCCGGATACATTTCCAACACGAAGCCT
78288432 GCGGGACTTTAGCCCGGATACATTTCCA
1 GCGGGACTTTAGCCCGGATACATTTCCA
78288460 CTGTCTTGAA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.23
Consensus pattern (39 bp):
GCGGGACTTTAGCCCGGATACATTTCCAACACGAAGCCT
Found at i:78291557 original size:57 final size:57
Alignment explanation
Indices: 78291495--78291619 Score: 178
Period size: 57 Copynumber: 2.2 Consensus size: 57
78291485 TGATCTCATT
**
78291495 TCACACACTTAGCGCCCCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAAC
1 TCACACACACAGCGCCCCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAAC
* * * * *
78291552 TCACACACACAGTGCCTCAACAACTGATCTCGCACATACAGTGCTCGGTTACGGAAC
1 TCACACACACAGCGCCCCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAAC
*
78291609 TCGCACACACA
1 TCACACACACA
78291620 ATGCCTATGT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.30, C:0.37, G:0.16, T:0.17
Consensus pattern (57 bp):
TCACACACACAGCGCCCCAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAAC
Found at i:78291562 original size:28 final size:28
Alignment explanation
Indices: 78291523--78291619 Score: 104
Period size: 28 Copynumber: 3.4 Consensus size: 28
78291513 AACAACCGAT
78291523 CTCGCACACACAGTGCTCGGTTACAGAA
1 CTCGCACACACAGTGCTCGGTTACAGAA
* **** * *
78291551 CTCACACACACAGTGCCTCAACAACTGAT
1 CTCGCACACACAGTG-CTCGGTTACAGAA
* *
78291580 CTCGCACATACAGTGCTCGGTTACGGAA
1 CTCGCACACACAGTGCTCGGTTACAGAA
78291608 CTCGCACACACA
1 CTCGCACACACA
78291620 ATGCCTATGT
Statistics
Matches: 52, Mismatches: 16, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
28 32 0.62
29 20 0.38
ACGTcount: A:0.30, C:0.35, G:0.18, T:0.18
Consensus pattern (28 bp):
CTCGCACACACAGTGCTCGGTTACAGAA
Found at i:78291625 original size:57 final size:57
Alignment explanation
Indices: 78291512--78291625 Score: 183
Period size: 57 Copynumber: 2.0 Consensus size: 57
78291502 CTTAGCGCCC
*
78291512 CAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCACACACACAGTGCCT
1 CAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCACACACACAATGCCT
* * * *
78291569 CAACAACTGATCTCGCACATACAGTGCTCGGTTACGGAACTCGCACACACAATGCCT
1 CAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCACACACACAATGCCT
78291626 ATGTTCACTT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.31, C:0.35, G:0.17, T:0.18
Consensus pattern (57 bp):
CAACAACCGATCTCGCACACACAGTGCTCGGTTACAGAACTCACACACACAATGCCT
Found at i:78293915 original size:39 final size:39
Alignment explanation
Indices: 78293857--78294015 Score: 264
Period size: 39 Copynumber: 4.1 Consensus size: 39
78293847 AATTATATTA
* *
78293857 CCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
78293896 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
78293935 CCAACATGAAGCCTGCGGGACTTTAGCCCGAATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
78293974 CCATCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
78294013 CCA
1 CCA
78294016 CTGTCTTAAA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:78303574 original size:42 final size:46
Alignment explanation
Indices: 78303472--78303587 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 46
78303462 ATACGTGTGC
* *
78303472 CAGTGTAAG-CCATATCTGGGATATGGCATCGATATTGGTATGTGATTT
1 CAGTGTAAGACCATATCTGGGATATGG-ATCG--ATTGATATGAGATTT
78303520 CA-TGTAAGACCATATCTGGGATATGG-T-G-TTGATATGAGATTT
1 CAGTGTAAGACCATATCTGGGATATGGATCGATTGATATGAGATTT
* *
78303562 -AGTGTAAGACCATGTCTGGGACATGG
1 CAGTGTAAGACCATATCTGGGATATGG
78303588 CATCAATGTG
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
41 1 0.02
42 34 0.55
45 1 0.02
46 1 0.02
47 6 0.10
48 19 0.31
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (46 bp):
CAGTGTAAGACCATATCTGGGATATGGATCGATTGATATGAGATTT
Found at i:78307264 original size:39 final size:39
Alignment explanation
Indices: 78307133--78307323 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
78307123 GGATATAACG
* ** **
78307133 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
78307173 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
78307213 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
78307251 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
78307291 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
78307324 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:78307268 original size:78 final size:80
Alignment explanation
Indices: 78307173--78307323 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
78307163 GGTTATAGCG
* * * *
78307173 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
78307235 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
78307251 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
78307316 AGCCCGGA
66 AGCCCGGA
78307324 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:78309679 original size:40 final size:40
Alignment explanation
Indices: 78309642--78309734 Score: 134
Period size: 40 Copynumber: 2.3 Consensus size: 40
78309632 GCTACTCGTT
* *
78309642 CAAATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGAATT-TAGTAACTCGCA
*
78309682 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGAATTTAGTAACTCGCA
*
78309722 CCAATGCCTTCGG
1 CAAATGCCTTCGG
78309735 ATCTTAGTCT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 46 0.96
41 2 0.04
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGAATTTAGTAACTCGCA
Found at i:78314599 original size:40 final size:39
Alignment explanation
Indices: 78314533--78314683 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
78314523 AAATTGAATG
* * *
78314533 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
78314572 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
78314612 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
78314652 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
78314684 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:78314697 original size:40 final size:39
Alignment explanation
Indices: 78314570--78314699 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
78314560 ATGCTGGAAA
* *
78314570 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
78314610 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
78314650 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
78314690 TTATATCCGG
1 TTATATCCGG
78314700 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:78320200 original size:78 final size:81
Alignment explanation
Indices: 78320080--78320261 Score: 248
Period size: 78 Copynumber: 2.3 Consensus size: 81
78320070 TACTCGTTCA
* *
78320080 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
78320143 ATTTAGTAAC-TCGCAC
65 ATATAGTAACTTAGCAC
**
78320159 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
78320222 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
78320238 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
78320262 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:78320261 original size:40 final size:40
Alignment explanation
Indices: 78320059--78320261 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
78320049 CGGAATTTAA
** *
78320059 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
78320099 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
78320139 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
78320177 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
78320217 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
78320257 CCGGA
1 CCGGA
78320262 CATCATTCGA
Statistics
Matches: 142, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
38 25 0.18
39 22 0.15
40 83 0.58
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:78323116 original size:66 final size:68
Alignment explanation
Indices: 78323040--78323226 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
78323030 TAGTACCACT
*
78323040 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
78323102 CACG
65 CACG
78323106 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
78323171 ATCACG
63 ATCACG
78323177 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
78323227 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:78323151 original size:71 final size:71
Alignment explanation
Indices: 78323063--78323226 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
78323053 CGATTTGTCT
78323063 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78323128 CTTTCA
66 CTTTCA
78323134 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
78323199 CTTTCA
66 CTTTCA
78323205 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
78323227 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:78323264 original size:71 final size:70
Alignment explanation
Indices: 78323063--78323260 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
78323053 CGATTTGTCT
* * *
78323063 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
78323128 CTTTCA
65 CTTTCA
* * *
78323134 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
78323199 CTTTCA
65 CTTTCA
* *
78323205 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
78323261 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:78324821 original size:27 final size:26
Alignment explanation
Indices: 78324786--78324897 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
78324776 AGCATGGCTG
* *
78324786 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
* *
78324812 CCAGATACAGATGATCGTGCCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
*
78324840 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * *
78324867 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
78324894 CCAG
1 CCAG
78324898 GACGCTTCAT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:78324850 original size:54 final size:54
Alignment explanation
Indices: 78324786--78324897 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
78324776 AGCATGGCTG
* * *
78324786 CCAGAACAGATA-ATGTGATAGAGTCACCAGATACAGATGATCGTGCCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGCCAGAGCCA
* * * *
78324840 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGCCAGAGCCA
78324894 CCAG
1 CCAG
78324898 GACGCTTCAT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGCCAGAGCCA
Found at i:78329301 original size:27 final size:27
Alignment explanation
Indices: 78328853--78329301 Score: 561
Period size: 27 Copynumber: 16.7 Consensus size: 27
78328843 ACAAAGTACT
*
78328853 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* *
78328880 CTC-AGTTTATAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACTGTTTTACC
*
78328907 CTAGATTTACAGAATTA-TCGTTTTACC
1 CTCGATTTACAGAATTACT-GTTTTACC
*
78328934 CTC-AGTTTACAGAATTATTGTTTTACC
1 CTCGA-TTTACAGAATTACTGTTTTACC
78328961 CT-GATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* * *
78328987 CTTGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
** * *
78329014 CTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* *
78329041 CTCAATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
*
78329068 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACTGTTTTACC
*
78329095 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* * *
78329122 CTCAATTTACATAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
*
78329149 CTCGATTTACATAATTA-TCGTTTTACC
1 CTCGATTTACAGAATTACT-GTTTTACC
*
78329176 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
**
78329203 CTCGATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
* *
78329230 CTC-ATTTATAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
*
78329256 CTTGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACTGTTTTACC
*
78329283 CTCGATTTACAAAATTACT
1 CTCGATTTACAGAATTACT
78329302 AAAATACCCT
Statistics
Matches: 375, Mismatches: 35, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
26 50 0.13
27 322 0.86
28 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACTGTTTTACC
Found at i:78330627 original size:9 final size:9
Alignment explanation
Indices: 78330615--78330691 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
78330605 TTTGATAAAC
78330615 ATGATATGT
1 ATGATATGT
*
78330624 ATGATATGCAC
1 ATGATATG--T
78330635 ATGATATGT
1 ATGATATGT
*
78330644 ATGATATGCAC
1 ATGATATG--T
*
78330655 ATGACATGT
1 ATGATATGT
*
78330664 ATGATATGCAC
1 ATGATATG--T
78330675 ATGATATGT
1 ATGATATGT
78330684 ATGATATG
1 ATGATATG
78330692 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:78330640 original size:11 final size:11
Alignment explanation
Indices: 78330624--78330695 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
78330614 CATGATATGT
78330624 ATGATATGCAC
1 ATGATATGCAC
*
78330635 ATGATATG--T
1 ATGATATGCAC
78330644 ATGATATGCAC
1 ATGATATGCAC
* *
78330655 ATGACATG--T
1 ATGATATGCAC
78330664 ATGATATGCAC
1 ATGATATGCAC
*
78330675 ATGATATG--T
1 ATGATATGCAC
78330684 ATGATATGCAC
1 ATGATATGCAC
78330695 A
1 A
78330696 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:78330703 original size:20 final size:20
Alignment explanation
Indices: 78330613--78330695 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
78330603 ATTTTGATAA
78330613 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
78330633 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
78330653 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
78330673 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
78330693 ACA
1 ACA
78330696 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:78330817 original size:24 final size:24
Alignment explanation
Indices: 78330749--78330937 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
78330739 GAGGAAGTGA
78330749 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
78330772 TAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
78330795 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
78330819 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
78330843 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
78330866 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
78330890 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
78330914 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
78330938 ATGATAAAGC
Statistics
Matches: 151, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
22 9 0.06
23 45 0.30
24 86 0.57
25 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:78330871 original size:47 final size:47
Alignment explanation
Indices: 78330749--78330916 Score: 284
Period size: 47 Copynumber: 3.6 Consensus size: 47
78330739 GAGGAAGTGA
78330749 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
78330795 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
78330843 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
78330890 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
78330917 AGAGGCTAGG
Statistics
Matches: 114, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
46 23 0.20
47 59 0.52
48 32 0.28
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:78330879 original size:71 final size:71
Alignment explanation
Indices: 78330748--78330937 Score: 269
Period size: 71 Copynumber: 2.7 Consensus size: 71
78330738 GGAGGAAGTG
* *
78330748 AAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
78330812 AGTTAT
66 AGTTAT
* *
78330818 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
78330882 CAGTTAT
65 CAGTTAT
* *
78330889 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTACGCC-CCAGTTAT
78330938 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
70 23 0.21
71 64 0.59
72 21 0.19
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:78331166 original size:31 final size:31
Alignment explanation
Indices: 78331131--78331194 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
78331121 CGTTTACCGT
*
78331131 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
78331162 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
78331193 AA
1 AA
78331195 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:78334046 original size:27 final size:27
Alignment explanation
Indices: 78334011--78334459 Score: 582
Period size: 27 Copynumber: 16.7 Consensus size: 27
78334001 CCAAAGTACT
*
78334011 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* **
78334038 CTC-AGTTTATAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* * *
78334065 CTAGATATACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
78334092 CTC-AGTTTACAGAATTATTGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
78334119 CTTGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
78334146 CT-GATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
78334172 CTCGATTTGTAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
78334199 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
78334226 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
78334253 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
78334280 CTCAATTTACATAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
78334307 CTCGATTTACATAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
78334334 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
78334361 CTCGATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
78334388 CTCGATTTATAGAATTGCTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
78334415 CTTGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
78334442 CTCGATTTACAAAATTAC
1 CTCGATTTACAGAATTAC
78334460 TAAAATACCC
Statistics
Matches: 375, Mismatches: 40, Indels: 14
0.87 0.09 0.03
Matches are distributed among these distances:
26 27 0.07
27 345 0.92
28 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:78335790 original size:9 final size:9
Alignment explanation
Indices: 78335778--78335854 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
78335768 TTTGATAAAC
78335778 ATGATATGT
1 ATGATATGT
*
78335787 ATGATATGCAC
1 ATGATATG--T
78335798 ATGATATGT
1 ATGATATGT
*
78335807 ATGATATGCAC
1 ATGATATG--T
*
78335818 ATGACATGT
1 ATGATATGT
*
78335827 ATGATATGCAC
1 ATGATATG--T
78335838 ATGATATGT
1 ATGATATGT
78335847 ATGATATG
1 ATGATATG
78335855 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:78335803 original size:11 final size:11
Alignment explanation
Indices: 78335787--78335858 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
78335777 CATGATATGT
78335787 ATGATATGCAC
1 ATGATATGCAC
*
78335798 ATGATATG--T
1 ATGATATGCAC
78335807 ATGATATGCAC
1 ATGATATGCAC
* *
78335818 ATGACATG--T
1 ATGATATGCAC
78335827 ATGATATGCAC
1 ATGATATGCAC
*
78335838 ATGATATG--T
1 ATGATATGCAC
78335847 ATGATATGCAC
1 ATGATATGCAC
78335858 A
1 A
78335859 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:78335866 original size:20 final size:20
Alignment explanation
Indices: 78335776--78335858 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
78335766 ATTTTGATAA
78335776 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
78335796 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
78335816 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
78335836 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
78335856 ACA
1 ACA
78335859 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:78335967 original size:24 final size:24
Alignment explanation
Indices: 78335912--78336100 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
78335902 GAGGAAGTGA
78335912 AAAAGGGCTTATG-CCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
78335934 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
78335958 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
78335982 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
78336006 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
78336029 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
78336053 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
78336077 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
78336101 ATGATAAAGC
Statistics
Matches: 152, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
22 12 0.08
23 30 0.20
24 99 0.65
25 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:78336041 original size:71 final size:71
Alignment explanation
Indices: 78335911--78336100 Score: 269
Period size: 71 Copynumber: 2.7 Consensus size: 71
78335901 GGAGGAAGTG
* *
78335911 AAAAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
78335975 AGTTAT
66 AGTTAT
* *
78335981 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCC
78336045 CAGTTAT
65 CAGTTAT
* *
78336052 AAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTACGCC-CCAGTTAT
78336101 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
70 13 0.12
71 62 0.57
72 33 0.31
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCC
AGTTAT
Found at i:78336328 original size:31 final size:31
Alignment explanation
Indices: 78336293--78336356 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
78336283 CGTTTACCGT
*
78336293 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
78336324 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
78336355 AA
1 AA
78336357 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:78339251 original size:78 final size:80
Alignment explanation
Indices: 78339164--78339598 Score: 475
Period size: 78 Copynumber: 5.5 Consensus size: 80
78339154 CAAAGTACTC
*
78339164 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTATTTTACCCT-ATTTACAGAA
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCATTTACAGAA
78339228 TTACCG-TTTACCCT
66 TTACCGTTTTACCCT
** * * ** * *
78339242 C-AGTTTACAGAATTATTG-TTTACCCT-TGATTACAGAATTACTGTTTTACCCTGATTTATAGA
1 CGA-TTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCATTTACAGA
78339304 ATTACCGTTTTACCCT
65 ATTACCGTTTTACCCT
** * *
78339320 CGATTTGTAAAATTACC-TTTTACCCTC-GATTTACAGAATTACCGTTTTACCCTCAGTTTACAG
1 CGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTACCATTTTACCCTCA-TTTACAG
**
78339383 AATTACTATTTTACCCT
64 AATTACCGTTTTACCCT
* * * *
78339400 CGATTT--AGAATTACCGTTTTACCCTCAATTTACATAATTACCGTTTTACCC-CGATTTACATA
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTC-ATTTACAGA
*
78339462 ATTATCGTTTTACCCT
65 ATTACCGTTTTACCCT
* *
78339478 CGATTTACAGAATTACCG-TTTACCC-GA-TTTACAGAATTACCATTTTACCCTCGATTTATAGA
1 CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTC-ATTTACAGA
* *
78339540 ATTGCTGTTTTACCCT
65 ATTACCGTTTTACCCT
* * *
78339556 TGATTTACAGAATTACTGTTTTACCCTC-GATTTACAAAATTAC
1 CGATTTACAGAATTACCGTTTTACCCTCAG-TTTACAGAATTAC
78339599 TAAAATACCC
Statistics
Matches: 303, Mismatches: 36, Indels: 33
0.81 0.10 0.09
Matches are distributed among these distances:
76 23 0.08
77 45 0.15
78 115 0.38
79 71 0.23
80 37 0.12
81 12 0.04
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.40
Consensus pattern (80 bp):
CGATTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCATTTACAGAA
TTACCGTTTTACCCT
Found at i:78339424 original size:105 final size:107
Alignment explanation
Indices: 78339164--78339600 Score: 474
Period size: 105 Copynumber: 4.2 Consensus size: 107
78339154 CAAAGTACTC
** *
78339164 CGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCT--ATTTACAG
1 CGATTTACAGAATTACTATTTTACCCTCGAGTTTA-AGAATTACCATTTTACCCTCGATTTACAG
* **
78339226 AATTACCGTTTACCCTC-AGTTTACAGAATTATTG-TTTACCCT
65 AATTACCTTTTACCCTCGA-TTTACAGAATTACCGTTTTACCCT
* * * ** *
78339268 TGA-TTACAGAATTACTGTTTTACCCT-GA-TTTATAGAATTACCGTTTTACCCTCGATTTGTAA
1 CGATTTACAGAATTACTATTTTACCCTCGAGTTTA-AGAATTACCATTTTACCCTCGATTTACAG
78339330 AATTACCTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
65 AATTACCTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
* * *
78339373 C-AGTTTACAGAATTACTATTTTACCCTCGA-TTT-AGAATTACCGTTTTACCCTCAATTTACAT
1 CGA-TTTACAGAATTACTATTTTACCCTCGAGTTTAAGAATTACCATTTTACCCTCGATTTACAG
* *
78339435 AATTACCGTTTTACCC-CGATTTACATAATTATCGTTTTACCCT
65 AATTACC-TTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
** *
78339478 CGATTTACAGAATTAC-CGTTTA-CC-CGA-TTTACAGAATTACCATTTTACCCTCGATTTATAG
1 CGATTTACAGAATTACTATTTTACCCTCGAGTTTA-AGAATTACCATTTTACCCTCGATTTACAG
* * * *
78339539 AATTGCTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCT
65 AATTAC-CTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
*
78339583 CGATTTACAAAATTACTA
1 CGATTTACAGAATTACTA
78339601 AAATACCCTT
Statistics
Matches: 285, Mismatches: 33, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
102 27 0.09
103 25 0.09
104 79 0.28
105 118 0.41
106 31 0.11
107 5 0.02
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (107 bp):
CGATTTACAGAATTACTATTTTACCCTCGAGTTTAAGAATTACCATTTTACCCTCGATTTACAGA
ATTACCTTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
Found at i:78339599 original size:27 final size:27
Alignment explanation
Indices: 78339164--78339598 Score: 524
Period size: 27 Copynumber: 16.6 Consensus size: 27
78339154 CAAAGTACTC
78339164 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
78339191 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
78339218 --ATTTACAGAATTACCG-TTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
78339242 C-AGTTTACAGAATTATTG-TTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
78339268 TGA-TTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
78339294 -GATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
78339320 CGATTTGTAAAATTACC-TTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
78339346 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
78339373 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
78339400 CGATTT--AGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
78339425 CAATTTACATAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* *
78339451 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
78339478 CGATTTACAGAATTACCG-TTTA-CC-
1 CGATTTACAGAATTACCGTTTTACCCT
*
78339502 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
78339529 CGATTTATAGAATTGCTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
78339556 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
78339583 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
78339599 TAAAATACCC
Statistics
Matches: 357, Mismatches: 35, Indels: 32
0.84 0.08 0.08
Matches are distributed among these distances:
24 25 0.07
25 57 0.16
26 106 0.30
27 168 0.47
28 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:78339607 original size:27 final size:27
Alignment explanation
Indices: 78339550--78339609 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
78339540 ATTGCTGTTT
* * ****
78339550 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
78339577 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
78339604 TACCCT
1 TACCCT
78339610 TGGTTTGTGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:78343553 original size:14 final size:14
Alignment explanation
Indices: 78343513--78343553 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
78343503 CTTCGGACTT
78343513 AACCC-GATATCAC
1 AACCCGGATATCAC
*
78343526 AACCACGGACATCAC
1 AACC-CGGATATCAC
78343541 AACCCGGATATCA
1 AACCCGGATATCA
78343554 TCACAATTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 4 0.17
14 9 0.38
15 11 0.46
ACGTcount: A:0.39, C:0.37, G:0.12, T:0.12
Consensus pattern (14 bp):
AACCCGGATATCAC
Found at i:78343621 original size:39 final size:39
Alignment explanation
Indices: 78343555--78343674 Score: 197
Period size: 39 Copynumber: 3.1 Consensus size: 39
78343545 CGGATATCAT
* *
78343555 CACAATTGCCTTC-GGCTTAGCCCGGATATCATAGCTCG
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
*
78343593 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCG
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
*
78343632 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCG
1 CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
78343671 CACA
1 CACA
78343675 TTCATTCACA
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
38 13 0.17
39 65 0.83
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (39 bp):
CACAATTGCCTTCGGGCTTAGCCCGGATATCACAACTCG
Found at i:78351572 original size:39 final size:39
Alignment explanation
Indices: 78351491--78351686 Score: 253
Period size: 39 Copynumber: 5.2 Consensus size: 39
78351481 TATGGTAACC
** *
78351491 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
78351531 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
78351570 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
78351609 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT--CAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
78351646 CGCACAA-----TTCGGGCTTAGCCCGGATATCACAATTT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA-CT
78351681 CGCACA
1 CGCACA
78351687 TTCATTCACA
Statistics
Matches: 145, Mismatches: 8, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
32 20 0.14
34 3 0.02
35 8 0.06
37 12 0.08
39 86 0.59
40 16 0.11
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:78357267 original size:40 final size:40
Alignment explanation
Indices: 78357211--78357428 Score: 208
Period size: 40 Copynumber: 5.5 Consensus size: 40
78357201 CATGAGCATT
* *
78357211 TGAATGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAAT-ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
*
78357252 TGAATATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* ** *
78357292 TGATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* * * *
78357332 TTG-TTATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG
1 -TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
** * * * * *
78357372 AT-ACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTG
1 -TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
**
78357412 TGGTTATATCC-GGCTAA
1 TGAATATATCCGGGCTAA
78357429 ATTCCGAAGA
Statistics
Matches: 153, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 6 0.04
40 140 0.92
41 7 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
Found at i:78361311 original size:25 final size:25
Alignment explanation
Indices: 78361283--78361331 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
78361273 AAATCGATCT
78361283 AAATACTATCTAAAAATTATGTTCG
1 AAATACTATCTAAAAATTATGTTCG
78361308 AAATACTATCTAAAAATTATGTTC
1 AAATACTATCTAAAAATTATGTTC
78361332 ATCAAACGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.45, C:0.12, G:0.06, T:0.37
Consensus pattern (25 bp):
AAATACTATCTAAAAATTATGTTCG
Found at i:78362816 original size:46 final size:46
Alignment explanation
Indices: 78362749--78362926 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
78362739 TGTAACCCGC
*
78362749 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
78362795 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * **
78362841 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
*
78362888 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
78362927 CTCAACCATC
Statistics
Matches: 107, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
46 72 0.67
47 35 0.33
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:78362869 original size:93 final size:93
Alignment explanation
Indices: 78362757--78362927 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
78362747 GCCCATAAGT
***
78362757 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
78362822 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
78362850 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
78362915 CGAGCTTGGATGC
66 CGAGCTCGGATGC
78362928 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:78365739 original size:43 final size:43
Alignment explanation
Indices: 78365686--78365787 Score: 186
Period size: 43 Copynumber: 2.4 Consensus size: 43
78365676 TTTATTTGAA
78365686 AAAAACGCCGCTAAAGATCGTGACCTTTAGCGGCGCTTATCCC
1 AAAAACGCCGCTAAAGATCGTGACCTTTAGCGGCGCTTATCCC
*
78365729 AAAAACGCCGCTAAAGATCGTGACCTTTAGCGGCGCTTTTCCC
1 AAAAACGCCGCTAAAGATCGTGACCTTTAGCGGCGCTTATCCC
*
78365772 ACAAACGCCGCTAAAG
1 AAAAACGCCGCTAAAG
78365788 GTCATGAAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGATCGTGACCTTTAGCGGCGCTTATCCC
Found at i:78366078 original size:18 final size:19
Alignment explanation
Indices: 78366041--78366081 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
78366031 ATTTAGAATC
78366041 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
78366060 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
78366078 AAAA
1 AAAA
78366082 TATCAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:78366083 original size:31 final size:31
Alignment explanation
Indices: 78366007--78366080 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
78365997 TCAAGTTATC
*
78366007 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATA-TAAAATAAAAATAAAAATCTAGAA
*
78366039 TCAAA-ACTAAAATAAATAATAAAAA-CTAG-A
1 TTAAATA-TAAAATAAA-AATAAAAATCTAGAA
78366069 TTAAATATAAAA
1 TTAAATATAAAA
78366081 ATATCAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 10 0.28
31 14 0.39
32 12 0.33
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.27
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATCTAGAA
Found at i:78371665 original size:18 final size:17
Alignment explanation
Indices: 78371636--78371674 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 17
78371626 TGTTGATTAA
78371636 TTTTAAATTTTTTTTAT
1 TTTTAAATTTTTTTTAT
78371653 TTTTAACATTTTTTTTAT
1 TTTTAA-ATTTTTTTTAT
78371671 TTTT
1 TTTT
78371675 CTCTTTTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTAAATTTTTTTTAT
Found at i:78371755 original size:8 final size:8
Alignment explanation
Indices: 78371730--78371845 Score: 154
Period size: 8 Copynumber: 15.0 Consensus size: 8
78371720 AAATATGGAC
*
78371730 TAAATTAT
1 TAAATTTT
*
78371738 TAAA-TAT
1 TAAATTTT
78371745 TAAATTTT
1 TAAATTTT
78371753 TAAATTTTTT
1 TAAA--TTTT
78371763 TAAATTTT
1 TAAATTTT
78371771 T--ATTTT
1 TAAATTTT
78371777 TAAATTTT
1 TAAATTTT
78371785 TAAA-TTT
1 TAAATTTT
78371792 TAAATTTT
1 TAAATTTT
78371800 TAAA-TTT
1 TAAATTTT
78371807 TAAATTTT
1 TAAATTTT
78371815 TAAA-TTT
1 TAAATTTT
78371822 TAAATTTT
1 TAAATTTT
78371830 TAAATTTT
1 TAAATTTT
78371838 TAAATTTT
1 TAAATTTT
78371846 ATTTTTTGAG
Statistics
Matches: 99, Mismatches: 1, Indels: 16
0.85 0.01 0.14
Matches are distributed among these distances:
6 6 0.06
7 28 0.28
8 57 0.58
10 8 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TAAATTTT
Found at i:78371756 original size:23 final size:23
Alignment explanation
Indices: 78371730--78371845 Score: 148
Period size: 23 Copynumber: 5.0 Consensus size: 23
78371720 AAATATGGAC
* *
78371730 TAAATTATTAAATATTAAATTTT
1 TAAATTTTTAAATTTTAAATTTT
*
78371753 TAAATTTTTTTAAATTTT-TATTTT
1 TAAA--TTTTTAAATTTTAAATTTT
78371777 TAAATTTTTAAATTTTAAATTTT
1 TAAATTTTTAAATTTTAAATTTT
78371800 TAAA-TTTTAAATTTTTAAA-TTT
1 TAAATTTTTAAA-TTTTAAATTTT
78371822 TAAATTTTTAAATTTTTAAATTTT
1 TAAATTTTTAAA-TTTTAAATTTT
78371846 ATTTTTTGAG
Statistics
Matches: 83, Mismatches: 4, Indels: 11
0.85 0.04 0.11
Matches are distributed among these distances:
22 26 0.31
23 35 0.42
24 12 0.14
25 10 0.12
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
TAAATTTTTAAATTTTAAATTTT
Found at i:78371852 original size:15 final size:15
Alignment explanation
Indices: 78371730--78371845 Score: 162
Period size: 15 Copynumber: 7.5 Consensus size: 15
78371720 AAATATGGAC
* *
78371730 TAAATTATTAAATAT
1 TAAATTTTTAAATTT
78371745 TAAATTTTTAAATTTTTT
1 TAAATTTTTAAA---TTT
*
78371763 TAAATTTTT-ATTTT
1 TAAATTTTTAAATTT
78371777 TAAATTTTTAAATTT
1 TAAATTTTTAAATTT
78371792 TAAATTTTTAAATTT
1 TAAATTTTTAAATTT
78371807 TAAATTTTTAAATTT
1 TAAATTTTTAAATTT
78371822 TAAATTTTTAAATTTT
1 TAAATTTTTAAA-TTT
78371838 TAAATTTT
1 TAAATTTT
78371846 ATTTTTTGAG
Statistics
Matches: 92, Mismatches: 4, Indels: 9
0.88 0.04 0.09
Matches are distributed among these distances:
14 12 0.13
15 57 0.62
16 11 0.12
17 1 0.01
18 11 0.12
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TAAATTTTTAAATTT
Found at i:78372913 original size:41 final size:41
Alignment explanation
Indices: 78372741--78372906 Score: 269
Period size: 41 Copynumber: 4.0 Consensus size: 41
78372731 AGGGGTTATA
* *
78372741 TGACTTTTAGCGGCGCTTTACCAAAAGCGCCGCTAATGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
**
78372782 TGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
*
78372823 TGACTTTTAGCGGCTTTTTACCAAAAGCGCCGCTATTGCTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
* *
78372864 CGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTACTC
1 TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
78372905 TG
1 TG
78372907 TGTTTTACAA
Statistics
Matches: 114, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 114 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (41 bp):
TGACTTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC
Found at i:78378829 original size:30 final size:30
Alignment explanation
Indices: 78378795--78378855 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
78378785 TTCCCAAGCC
78378795 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
78378825 TAGGGGCAAAATTGTAATTTTGTAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
78378855 T
1 T
78378856 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:78379671 original size:64 final size:64
Alignment explanation
Indices: 78379590--78379773 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
78379580 AGACATTATG
* * * * *
78379590 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATATAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
78379654 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
78379719 AA
63 AA
* * *
78379721 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
78379774 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 25 0.26
66 21 0.22
67 31 0.32
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:78386142 original size:15 final size:15
Alignment explanation
Indices: 78386106--78386136 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
78386096 TTACCATTCC
78386106 TTGTTTAACCAACTT
1 TTGTTTAACCAACTT
78386121 TTGTTTAACCAACTT
1 TTGTTTAACCAACTT
78386136 T
1 T
78386137 CTTTTAGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.48
Consensus pattern (15 bp):
TTGTTTAACCAACTT
Found at i:78388500 original size:36 final size:36
Alignment explanation
Indices: 78388460--78388531 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
78388450 AAAGAATCTG
*
78388460 TTGAAAAAGCA-AAAGAAAAAGAACAA-GAAAAAAAGA
1 TTGAAAAAG-AGAAAG-AAAAGAAAAACGAAAAAAAGA
*
78388496 TTGAAAAAGAGAAAGAAAAGAAAAACGAGAAAAAGA
1 TTGAAAAAGAGAAAGAAAAGAAAAACGAAAAAAAGA
78388532 AAGGAAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 10 0.31
36 22 0.69
ACGTcount: A:0.71, C:0.04, G:0.19, T:0.06
Consensus pattern (36 bp):
TTGAAAAAGAGAAAGAAAAGAAAAACGAAAAAAAGA
Found at i:78388513 original size:12 final size:12
Alignment explanation
Indices: 78388462--78388541 Score: 51
Period size: 12 Copynumber: 6.6 Consensus size: 12
78388452 AGAATCTGTT
78388462 GAAAAAGCA-AAA
1 GAAAAAG-AGAAA
78388474 GAAAAAGA-ACAA
1 GAAAAAGAGA-AA
* **
78388486 GAAAAAAAGATT
1 GAAAAAGAGAAA
78388498 GAAAAAGAGAAA
1 GAAAAAGAGAAA
*
78388510 G-AAAAGAAAAA
1 GAAAAAGAGAAA
78388521 CGAGAAAA-AGAAA
1 -GA-AAAAGAGAAA
78388534 GGAAAAAG
1 -GAAAAAG
78388542 TAAGAGAGTG
Statistics
Matches: 53, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
11 11 0.21
12 31 0.58
13 7 0.13
14 4 0.08
ACGTcount: A:0.72, C:0.04, G:0.21, T:0.03
Consensus pattern (12 bp):
GAAAAAGAGAAA
Found at i:78388533 original size:6 final size:6
Alignment explanation
Indices: 78388462--78388520 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
78388452 AGAATCTGTT
* * ** *
78388462 GAAAAA GCAAAA GAAAAA GAACAA GAAAAA -AAGATT GAAAAA GAGAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAA-AAA GAAAAA GAAAAA
78388510 G-AAAA GAAAAA
1 GAAAAA GAAAAA
78388521 CGAGAAAAAG
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
5 6 0.15
6 32 0.80
7 2 0.05
ACGTcount: A:0.75, C:0.03, G:0.19, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:78391167 original size:48 final size:48
Alignment explanation
Indices: 78391096--78391223 Score: 143
Period size: 48 Copynumber: 2.7 Consensus size: 48
78391086 GGTAAAGTGT
* * ** * *
78391096 CGATGCCATGTCC-CAAACATGGTCTTACATTGGCT-TACATGTCGAGGC
1 CGATGCCATGTCCTC-GACATGGTCTTACACTAACTCT-CATCTCAAGGC
*
78391144 CGATGCCATGTCCTCGACATGGTCTTACACTAACTCTCATCTCAATGC
1 CGATGCCATGTCCTCGACATGGTCTTACACTAACTCTCATCTCAAGGC
* *
78391192 CGATGCCATGTTCTAGACATGGTCTTACACTA
1 CGATGCCATGTCCTCGACATGGTCTTACACTA
78391224 GCACACATAT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 67 0.97
49 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCTCGACATGGTCTTACACTAACTCTCATCTCAAGGC
Found at i:78396102 original size:27 final size:27
Alignment explanation
Indices: 78396039--78396150 Score: 106
Period size: 27 Copynumber: 4.1 Consensus size: 27
78396029 AGGAAGCGTC
* * *
78396039 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTACCACATA-TATCTGTT
*
78396066 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTACCACATATATCTGTT
78396093 CTGGTGGCTCTACCACGATCA-A-CTGTAT
1 CTGGTGGCTCTACCAC-AT-ATATCTGT-T
* *
78396121 CTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTCTACCACATATATCTGTT
78396147 CTGG
1 CTGG
78396151 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 5, Indels: 13
0.80 0.05 0.14
Matches are distributed among these distances:
26 6 0.08
27 48 0.65
28 19 0.26
29 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTACCACATATATCTGTT
Found at i:78397312 original size:19 final size:20
Alignment explanation
Indices: 78397278--78397315 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
78397268 TACTATAGCC
*
78397278 ATTTAAGTTGTCCTTAGCTT
1 ATTTAACTTGTCCTTAGCTT
78397298 ATTTAACTTGT-CTTAGCT
1 ATTTAACTTGTCCTTAGCT
78397316 CCTACAGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (20 bp):
ATTTAACTTGTCCTTAGCTT
Found at i:78401274 original size:80 final size:80
Alignment explanation
Indices: 78401190--78401338 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
78401180 TATGGTAACC
* * * *
78401190 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
78401254 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
78401270 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
78401335 CCGG
66 CCGG
78401339 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:78401280 original size:40 final size:38
Alignment explanation
Indices: 78401231--78401338 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
78401221 ATCACGATTT
*
78401231 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
78401271 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
78401311 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
78401339 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:78414330 original size:24 final size:24
Alignment explanation
Indices: 78414285--78414330 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
78414275 AAACATGGCA
* *
78414285 AAAATAAAAATGACAATGATAACG
1 AAAATAAAAACGACAATAATAACG
* *
78414309 AAAATGAAAACGATAATAATAA
1 AAAATAAAAACGACAATAATAA
78414331 TAATGTAAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.65, C:0.07, G:0.11, T:0.17
Consensus pattern (24 bp):
AAAATAAAAACGACAATAATAACG
Found at i:78414544 original size:22 final size:21
Alignment explanation
Indices: 78414507--78414549 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
78414497 AATAATAACG
*
78414507 ATATATAAACATATAA-ATGT
1 ATATATAAAAATATAATATGT
78414527 ATATATTAAAAATAATAATATGT
1 ATATA-TAAAAAT-ATAATATGT
78414550 GTACGTAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 5 0.26
21 6 0.32
22 4 0.21
23 4 0.21
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (21 bp):
ATATATAAAAATATAATATGT
Found at i:78419959 original size:25 final size:25
Alignment explanation
Indices: 78419895--78420035 Score: 66
Period size: 25 Copynumber: 5.8 Consensus size: 25
78419885 AAGCTCGTGC
* *
78419895 GAGCC-TATA-CGGGTAGCTCTGAA
1 GAGCCATATATCGGGAAGCTCCGAA
*
78419918 GAGCCAT-TAATCAGGAAGCTCCGAA
1 GAGCCATAT-ATCGGGAAGCTCCGAA
* *
78419943 TAGCCATATATCGGGAAG-TTC-AA
1 GAGCCATATATCGGGAAGCTCCGAA
*
78419966 GTGAGCC--ATATCGGGAAGCTCACAAA
1 --GAGCCATATATCGGGAAGCTC-CGAA
* * * * *
78419992 GATCTA-ATTAACAGGAAGCTCATGAA
1 GAGCCATA-TATCGGGAAGCTC-CGAA
78420018 GAGCCATA-ATCGGGAAGC
1 GAGCCATATATCGGGAAGC
78420036 CCATAAGAGC
Statistics
Matches: 88, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
23 19 0.22
24 8 0.09
25 39 0.44
26 21 0.24
27 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.19
Consensus pattern (25 bp):
GAGCCATATATCGGGAAGCTCCGAA
Found at i:78425853 original size:22 final size:22
Alignment explanation
Indices: 78425825--78425869 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
78425815 AATCAATTTA
78425825 ATTCATTCGTAACATAAATATT
1 ATTCATTCGTAACATAAATATT
78425847 ATTCATTCGTAACATAAATATT
1 ATTCATTCGTAACATAAATATT
78425869 A
1 A
78425870 ACTAACATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.04, T:0.40
Consensus pattern (22 bp):
ATTCATTCGTAACATAAATATT
Found at i:78426397 original size:16 final size:16
Alignment explanation
Indices: 78426376--78426409 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
78426366 TCCTCAAAAT
78426376 TTTTATTACTTAAACA
1 TTTTATTACTTAAACA
*
78426392 TTTTATTCCTTAAACA
1 TTTTATTACTTAAACA
78426408 TT
1 TT
78426410 AAAATTACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTATTACTTAAACA
Found at i:78428258 original size:15 final size:15
Alignment explanation
Indices: 78428238--78428290 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
78428228 ACACACGGCC
78428238 GTGTCACATGGCCGT
1 GTGTCACATGGCCGT
78428253 GTGTCACACATGG-C-T
1 GTGT--CACATGGCCGT
* *
78428268 GAGGCACATGGCCGT
1 GTGTCACATGGCCGT
78428283 GTGTCACA
1 GTGTCACA
78428291 CATGGCTGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
13 7 0.23
14 1 0.03
15 14 0.47
16 1 0.03
17 7 0.23
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (15 bp):
GTGTCACATGGCCGT
Found at i:78428264 original size:17 final size:17
Alignment explanation
Indices: 78428242--78428296 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 17
78428232 ACGGCCGTGT
78428242 CACATGGCCGTGTGTCA
1 CACATGGCCGTGTGTCA
* *
78428259 CACATGG-C-TGAG--G
1 CACATGGCCGTGTGTCA
78428272 CACATGGCCGTGTGTCA
1 CACATGGCCGTGTGTCA
78428289 CACATGGC
1 CACATGGC
78428297 TGAGGCACAC
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
13 7 0.23
14 1 0.03
15 6 0.20
16 1 0.03
17 15 0.50
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (17 bp):
CACATGGCCGTGTGTCA
Found at i:78428276 original size:30 final size:30
Alignment explanation
Indices: 78428242--78428314 Score: 137
Period size: 30 Copynumber: 2.4 Consensus size: 30
78428232 ACGGCCGTGT
78428242 CACATGGCCGTGTGTCACACATGGCTGAGG
1 CACATGGCCGTGTGTCACACATGGCTGAGG
78428272 CACATGGCCGTGTGTCACACATGGCTGAGG
1 CACATGGCCGTGTGTCACACATGGCTGAGG
*
78428302 CACACGGCCGTGT
1 CACATGGCCGTGT
78428315 CAGCTAACCG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (30 bp):
CACATGGCCGTGTGTCACACATGGCTGAGG
Found at i:78428305 original size:15 final size:15
Alignment explanation
Indices: 78428257--78428306 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
78428247 GGCCGTGTGT
78428257 CACACATGGCTGAGG
1 CACACATGGCTGAGG
* *
78428272 --CACATGGCCGTGTGT
1 CACACATGG-C-TGAGG
78428287 CACACATGGCTGAGG
1 CACACATGGCTGAGG
78428302 CACAC
1 CACAC
78428307 GGCCGTGTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 8
0.69 0.10 0.21
Matches are distributed among these distances:
13 7 0.26
14 1 0.04
15 11 0.41
16 1 0.04
17 7 0.26
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.16
Consensus pattern (15 bp):
CACACATGGCTGAGG
Found at i:78428326 original size:43 final size:43
Alignment explanation
Indices: 78428279--78428400 Score: 163
Period size: 43 Copynumber: 2.8 Consensus size: 43
78428269 AGGCACATGG
* * * *
78428279 CCGTGTGTCACACATGGCTGAGGCACACGGCCGTGTCAGCTAA
1 CCGTGTGTCACACACGGCTGAGACACACGCCCGTGTCACCTAA
* *
78428322 CCGTGTGTCACACACGGTTGAGACACACGCCCGTGTCACCTAG
1 CCGTGTGTCACACACGGCTGAGACACACGCCCGTGTCACCTAA
* * *
78428365 CCGTGTGTCATACACAGTTGAGACACACGCCCGTGT
1 CCGTGTGTCACACACGGCTGAGACACACGCCCGTGT
78428401 TTCTGCCCAT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 71 1.00
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (43 bp):
CCGTGTGTCACACACGGCTGAGACACACGCCCGTGTCACCTAA
Found at i:78429560 original size:25 final size:25
Alignment explanation
Indices: 78429532--78429615 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 25
78429522 GTATGGTCTC
78429532 ACGAGTTGTAAATCGGTAAGCTTAT
1 ACGAGTTGTAAATCGGTAAGCTTAT
* *
78429557 ACGAGTTG-AGAATTGGTAAGCTCT-C
1 ACGAGTTGTA-AATCGGTAAGCT-TAT
* ** *
78429582 ACGAGCTACAAATCGGTAAGCTCAT
1 ACGAGTTGTAAATCGGTAAGCTTAT
78429607 ACGAGTTGT
1 ACGAGTTGT
78429616 GGTGTGTCCG
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
24 1 0.02
25 42 0.93
26 2 0.04
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (25 bp):
ACGAGTTGTAAATCGGTAAGCTTAT
Found at i:78434008 original size:13 final size:13
Alignment explanation
Indices: 78433990--78434014 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78433980 ACAAATAATA
78433990 AAATATTAAAATC
1 AAATATTAAAATC
78434003 AAATATTAAAAT
1 AAATATTAAAAT
78434015 TGTGAATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
AAATATTAAAATC
Found at i:78434149 original size:11 final size:13
Alignment explanation
Indices: 78434120--78434144 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78434110 TTAAATATTT
78434120 TTAATATTTTATA
1 TTAATATTTTATA
78434133 TTAATATTTTAT
1 TTAATATTTTAT
78434145 TAATAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTAATATTTTATA
Found at i:78435375 original size:2 final size:2
Alignment explanation
Indices: 78435370--78435397 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
78435360 TAATTTATGA
78435370 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78435398 TACAATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:78435488 original size:6 final size:6
Alignment explanation
Indices: 78435477--78435503 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
78435467 ATGTAATATA
78435477 TAAATT TAAATT TAAATT TAAATT TAA
1 TAAATT TAAATT TAAATT TAAATT TAA
78435504 TTAGGTTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TAAATT
Found at i:78440453 original size:45 final size:45
Alignment explanation
Indices: 78440404--78440491 Score: 113
Period size: 45 Copynumber: 2.0 Consensus size: 45
78440394 ATTAAATAAT
* * *
78440404 AGTTAATTAAAATATATAGCATTTATTATAAATTATTTATATTAA
1 AGTTAATTAAAATATATAACATCTATTATAAATAATTTATATTAA
* * * *
78440449 AGTTAATTTAATTATATAATATCTATTATTAATAATTTATATT
1 AGTTAATTAAAATATATAACATCTATTATAAATAATTTATATT
78440492 TGGTCAAGAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.50
Consensus pattern (45 bp):
AGTTAATTAAAATATATAACATCTATTATAAATAATTTATATTAA
Found at i:78443456 original size:47 final size:47
Alignment explanation
Indices: 78443393--78443734 Score: 540
Period size: 47 Copynumber: 7.3 Consensus size: 47
78443383 CCCTTCGGGA
* * *
78443393 CTTATCACATTTATACACTTTCACATCCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
***
78443440 CTTATCACATATATACACTTTCACATTCATCACATTGGCTGCTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
78443487 CCTATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
78443534 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
78443581 CCTATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
78443628 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
78443675 CCTATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
78443722 CTTATCACATATA
1 CTTATCACATATA
78443735 CATATCTTGT
Statistics
Matches: 267, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 267 1.00
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:78443556 original size:94 final size:94
Alignment explanation
Indices: 78443395--78443734 Score: 617
Period size: 94 Copynumber: 3.6 Consensus size: 94
78443385 CTTCGGGACT
* * * *
78443395 TATCACATTTATACACTTTCACATCCATCATATTGGCCATTCGGCCTTATCACATATATACACTT
1 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
* **
78443460 TCACATTCATCACATTGGCTGCTCGGCCC
66 TCACATTCATCACGTTGGCCACTCGGCCC
78443489 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
1 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
78443554 TCACATTCATCACGTTGGCCACTCGGCCC
66 TCACATTCATCACGTTGGCCACTCGGCCC
78443583 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
1 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
78443648 TCACATTCATCACGTTGGCCACTCGGCCC
66 TCACATTCATCACGTTGGCCACTCGGCCC
78443677 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
78443735 CATATCTTGT
Statistics
Matches: 239, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 239 1.00
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (94 bp):
TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
TCACATTCATCACGTTGGCCACTCGGCCC
Found at i:78446865 original size:26 final size:25
Alignment explanation
Indices: 78446827--78446889 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 25
78446817 AGTTTCTTTC
78446827 ATATAT-TAT-TTA-TTTTAAACTATT
1 ATATATATATATTACTTTTAAA-T-TT
78446851 ATATATATATATTATCTTTTAAATTT
1 ATATATATATATTA-CTTTTAAATTT
78446877 ATATATATATATT
1 ATATATATATATT
78446890 TTAAATTGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
24 6 0.17
25 3 0.09
26 18 0.51
27 1 0.03
28 7 0.20
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (25 bp):
ATATATATATATTACTTTTAAATTT
Found at i:78446870 original size:28 final size:25
Alignment explanation
Indices: 78446806--78446890 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 25
78446796 CTTTTGTTAT
* * *
78446806 TATTTATTTTAAGTTTCTTTCATATA
1 TATTTATTTTAAATTTATAT-ATATA
78446832 TTATTTATTTTAAACTATTATATATATA
1 -TATTTATTTTAAA-T-TTATATATATA
*
78446860 TATTATCTTTTAAATTTATATATATA
1 TATT-TATTTTAAATTTATATATATA
78446886 TATTT
1 TATTT
78446891 TAAATTGCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
25 1 0.02
26 15 0.29
27 17 0.33
28 14 0.27
29 4 0.08
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (25 bp):
TATTTATTTTAAATTTATATATATA
Found at i:78446881 original size:20 final size:21
Alignment explanation
Indices: 78446854--78446896 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
78446844 AACTATTATA
*
78446854 TATATATATTATCTTTTAAATT
1 TATATATA-TATATTTTAAATT
78446876 TATATATATATATTTTAAATT
1 TATATATATATATTTTAAATT
78446897 GCTTTATATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (21 bp):
TATATATATATATTTTAAATT
Found at i:78459112 original size:44 final size:43
Alignment explanation
Indices: 78459045--78459405 Score: 292
Period size: 44 Copynumber: 8.0 Consensus size: 43
78459035 TACCACGGTG
* * * * *
78459045 AATCTTATCTCCTTGAAGCTGCAGTAGAGCAGATTAAAGCCATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-CTACA
* * * *
78459089 AACCTTATCTCCCTGAAGTTGCAGTGGGGCAGGTTAAAAATAAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAACT--ACA
*
78459135 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGACAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT----A-AA-CTACA
* * *
78459184 AATCTTAACTCCCTAAAGTTGCAGTGGAGCAGATTAAACCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACTACA
* * * * * *
78459227 AATCTCAACTCCTTGAAGTTGTAGTGGAGAAGATTAACACAACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA-ACTACA
* * * *
78459271 AACCTTATCTCCTTGAAGTTGCAGTGGTGCA-AGTTAAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAA-CTACA
* * *
78459315 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAAATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAACTA-CA
* * * * *
78459360 AATCTTATATCTCTGAAGCTGCAGTAGAGCGGATTAAAGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-CTACA
78459404 AA
1 AA
78459406 CCACAAATCT
Statistics
Matches: 256, Mismatches: 46, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
43 38 0.15
44 106 0.41
45 40 0.16
46 33 0.13
49 36 0.14
50 2 0.01
51 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACTACA
Found at i:78460230 original size:14 final size:14
Alignment explanation
Indices: 78460211--78460239 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
78460201 AATCTACTTT
78460211 AAATATAAAAAGGG
1 AAATATAAAAAGGG
78460225 AAATATAAAAAGGG
1 AAATATAAAAAGGG
78460239 A
1 A
78460240 GAAAAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.21, T:0.14
Consensus pattern (14 bp):
AAATATAAAAAGGG
Found at i:78460248 original size:16 final size:15
Alignment explanation
Indices: 78460215--78460257 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
78460205 TACTTTAAAT
*
78460215 ATAAAAA-GGGAAAT
1 ATAAAAAGGGGAAAA
78460229 ATAAAAAGGGAGAAAA
1 ATAAAAAGGG-GAAAA
*
78460245 ATAAAAAGAGGAA
1 ATAAAAAGGGGAA
78460258 GAAGTGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 7 0.28
15 5 0.20
16 13 0.52
ACGTcount: A:0.67, C:0.00, G:0.23, T:0.09
Consensus pattern (15 bp):
ATAAAAAGGGGAAAA
Found at i:78460260 original size:18 final size:16
Alignment explanation
Indices: 78460215--78460252 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
78460205 TACTTTAAAT
*
78460215 ATAAAAA-GG-GAAAT
1 ATAAAAAGGGAGAAAA
78460229 ATAAAAAGGGAGAAAA
1 ATAAAAAGGGAGAAAA
78460245 ATAAAAAG
1 ATAAAAAG
78460253 AGGAAGAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 7 0.33
15 2 0.10
16 12 0.57
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.11
Consensus pattern (16 bp):
ATAAAAAGGGAGAAAA
Done.